Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_50 ID=scaffold_50-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  23619

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1768--1813
22
2.1
22
88
8
67
10
17
30
41
1.84
1905--2132
43
5.3
43
84
5
275
32
29
17
21
1.96
1883--2132
87
2.9
86
82
7
292
31
28
17
23
1.97
2183--2242
25
2.5
25
94
5
106
41
0
10
48
1.37
6210--6505
44
6.7
44
87
3
425
31
25
13
30
1.94
6070--6417
117
2.8
118
81
8
342
31
25
14
29
1.95
6506--7493
88
11.2
88
91
0
1516
24
26
23
24
2.00
9100--9127
10
2.8
10
100
0
56
0
7
0
92
0.37
14404--14478
19
3.8
19
89
6
123
36
17
10
36
1.84
15093--15136
3
14.3
3
81
13
54
29
0
2
68
1.02
15254--15314
24
2.6
22
76
20
61
37
11
1
49
1.49
15331--15377
16
2.9
16
83
0
58
42
8
0
48
1.33
17280--17326
19
2.5
19
82
6
60
27
19
10
42
1.84
20044--20082
15
2.7
15
88
7
55
69
0
17
12
1.19
20033--20078
22
2.0
23
83
8
58
67
2
17
13
1.33
21311--21923
88
7.0
88
91
1
960
25
19
26
27
1.99
22228--22472
44
5.7
41
77
9
174
28
22
22
26
1.99
22277--22570
126
2.3
129
80
10
311
31
20
20
27
1.97
22954--22993
21
1.9
21
94
0
71
12
50
25
12
1.75
22958--23003
21
2.2
21
84
0
56
17
47
23
10
1.79

Tables:   1

The End!