Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_506 ID=scaffold_506-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6312
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:5233 original size:5 final size:5

Alignment explanation


    Indices: 5223--5275  Score: 52
    Period size: 5  Copynumber: 10.0  Consensus size: 5

       5213 AAAATTGCAC

                                           *       *  *             
       5223 ATTTT ATTTT ATTTT ATTTT ATTTTT CTTCTT CCTTCT ATTTT ATTTT
          1 ATTTT ATTTT ATTTT ATTTT A-TTTT ATT-TT -ATTTT ATTTT ATTTT

                 
       5271 ATTTT
          1 ATTTT

       5276 GCAGGTAGAC


Statistics
Matches: 41,  Mismatches: 4, Indels: 6
        0.80            0.08        0.12

Matches are distributed among these distances:
   5   31  0.76
   6    7  0.17
   7    3  0.07

ACGTcount: A:0.15, C:0.09, G:0.00, T:0.75


Consensus pattern (5 bp):   
ATTTT

Done.