Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_510 ID=scaffold_510-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6267
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Found at i:581 original size:23 final size:22
Alignment explanation
Indices: 538--595 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
528 AAAGGGTATC
* *
538 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
559 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
582 TACATATCATATCT
1 TACAAATCATATCT
596 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:598 original size:19 final size:19
Alignment explanation
Indices: 551--648 Score: 97
Period size: 19 Copynumber: 4.8 Consensus size: 19
541 AAATTAAATC
*
551 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
571 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
593 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
**
614 TCTAAGATTGTATATCATA
1 TCTAAGATTACATATCATA
*
633 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
649 CTCGAAGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
19 33 0.48
21 18 0.26
22 7 0.10
23 11 0.16
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:611 original size:21 final size:21
Alignment explanation
Indices: 585--647 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
575 CTAAGATTAC
585 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
606 ATATCATATCTAAGATTG--T
1 ATATCATATCTAAGATTGCAT
625 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
646 AT
1 AT
648 CCTCGAAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
19 19 0.47
21 21 0.52
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.40
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:964 original size:44 final size:44
Alignment explanation
Indices: 914--1021 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 44
904 TGCTCTTTGT
* * * *
914 AACTTCAGAGAGATAAAATCTGT-GATTTTAATCCGCTCCACTGC
1 AACTTCAGGGAGATAAAAT-TATAGACTTTAATCCACTCCACTGC
** * *
958 AACTTCAGGGAGATAGGATTATAGGCTTTAATCTACTCCACTGC
1 AACTTCAGGGAGATAAAATTATAGACTTTAATCCACTCCACTGC
1002 AACTTCAGGGAGATAAAATT
1 AACTTCAGGGAGATAAAATT
1022 TGCCATCTGC
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 2 0.04
44 51 0.96
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (44 bp):
AACTTCAGGGAGATAAAATTATAGACTTTAATCCACTCCACTGC
Found at i:1149 original size:50 final size:50
Alignment explanation
Indices: 1048--1149 Score: 116
Period size: 50 Copynumber: 2.0 Consensus size: 50
1038 GGGGAAACAG
* *
1048 GATTCGCCGTCGTGGCTTCAATATGTTCCACTACAACGCTAGGGAAGTAA
1 GATTCGCCGTCGTGGCTTCAATATGTTCCACTACAACGCAAGGCAAGTAA
* * * * * *
1098 GATTCGTCGTTGTGGCTTCAATCTTTTCCATTGCAACGTCAAGGCAA-TAA
1 GATTCGCCGTCGTGGCTTCAATATGTTCCACTACAACG-CAAGGCAAGTAA
1148 GA
1 GA
1150 CTGGTGTCTT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
50 37 0.86
51 6 0.14
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (50 bp):
GATTCGCCGTCGTGGCTTCAATATGTTCCACTACAACGCAAGGCAAGTAA
Found at i:1268 original size:88 final size:88
Alignment explanation
Indices: 1153--1556 Score: 603
Period size: 88 Copynumber: 4.6 Consensus size: 88
1143 AATAAGACTG
* * * *
1153 GTGTCTTTGATCTTCTTCACTGTCAGTACAAGAAGGTAAGATCTGCTATCTTTAACCTGCTCCGC
1 GTGTCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGC
* *
1218 TGCCACCGAGGGAGGCAAGGCTA
66 TGCAACCCAGGGAGGCAAGGCTA
** * *
1241 GTGTCTTCAATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGC
1 GTGTCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGC
* * *
1306 TGCCACCGAGGGAGGCAAGGCTG
66 TGCAACCCAGGGAGGCAAGGCTA
* *
1329 GTGTCTTTGATCTGCTTCGCTG-CTGGTATAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCG
1 GTGTCTTTGATCTGCTTCGCTGTC-AGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCG
1393 CTGCAACCCAGGGAGGCAAGGCTA
65 CTGCAACCCAGGGAGGCAAGGCTA
* *
1417 GTGTCTTTGATCTGCTTCGCTGTCGGTACAGGAAGGCAAGATTTGCTATCTTTAACCTGCTCCGC
1 GTGTCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGC
*
1482 TACAACCCAGGGAGGCAAGGCTA
66 TGCAACCCAGGGAGGCAAGGCTA
* * *
1505 GTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTACTATCTT
1 GTGTCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTT
1557 CGATCTACTT
Statistics
Matches: 290, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
87 1 0.00
88 288 0.99
89 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.27
Consensus pattern (88 bp):
GTGTCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGC
TGCAACCCAGGGAGGCAAGGCTA
Found at i:1322 original size:44 final size:43
Alignment explanation
Indices: 1190--1500 Score: 177
Period size: 44 Copynumber: 7.1 Consensus size: 43
1180 ACAAGAAGGT
1190 AAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCGAGGGAGGC
1 AAGATCTGCTATCTTTAACCTGCTCCGCTGCCACC-AGGGAGGC
* * * * * * * * * *
1234 AAG-GCTAG-TGTCTTCAATCTGCTTCACCGTCAGTACAGGAAGGC
1 AAGATCT-GCTATCTTTAACCTGCTCCGCTGCCA--CCAGGGAGGC
1278 AAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCGAGGGAGGC
1 AAGATCTGCTATCTTTAACCTGCTCCGCTGCCACC-AGGGAGGC
* * * * * ** * *
1322 AAG-GCTGGTGTCTTTGATCTGCTTCGCTGCTGGTA-TAGGAAGGC
1 AAGATCTGCTATCTTTAACCTGC-TC-C-GCTGCCACCAGGGAGGC
*
1366 AAGATCTGCTATCTTTAACCTGCTCCGCTGCAACCCAGGGAGGC
1 AAGATCTGCTATCTTTAACCTGCTCCGCTGCCA-CCAGGGAGGC
* * * * * * *
1410 AAG-GCTAG-TGTCTTTGATCTGCTTCGCTGTCGGTA-CAGGAAGGC
1 AAGATCT-GCTATCTTTAACCTGCTCCGCTG-C--CACCAGGGAGGC
* * *
1454 AAGATTTGCTATCTTTAACCTGCTCCGCTACAACCCAGGGAGGC
1 AAGATCTGCTATCTTTAACCTGCTCCGCTGCCA-CCAGGGAGGC
1498 AAG
1 AAG
1501 GCTAGTGTCT
Statistics
Matches: 193, Mismatches: 54, Indels: 40
0.67 0.19 0.14
Matches are distributed among these distances:
42 6 0.03
43 54 0.28
44 75 0.39
45 52 0.27
46 6 0.03
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (43 bp):
AAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCAGGGAGGC
Found at i:1634 original size:89 final size:89
Alignment explanation
Indices: 1534--2399 Score: 791
Period size: 89 Copynumber: 9.8 Consensus size: 89
1524 CTGTCAGTGC
* * * * *
1534 AGGAAGGCAAGATCTACTATCTTCGATCTACTTCACGCTAATACATGAAGACAATATCTGCTTTC
1 AGGAAGACAAGATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATC
* * *
1599 TTCGATCTACTTCGCCACCAGTAT
66 TTCGATCCACTTCGCTACCAATAT
* * * * * * * * * * * *
1623 GGGAACACAAGATCT-GCATATTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTACCAT
1 AGGAAGACAAGATCTACCATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTAT
* * * *
1687 CTTCGATCTACTTCAC-GCCAATAC
65 CTTCGATCCACTTCGCTACCAATAT
* * * ** * * * * * * * *
1711 ATGAAGACAAGATATGCTTTCTTCGATCCACTTCGCTACCAATATAGGAAGATAGGATCT-ATCA
1 AGGAAGACAAGATCTACCATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCT-A
* ** * *
1775 TCTTCGATCTACTTTAC-GCCAATAC
64 TCTTCGATCCACTTCGCTACCAATAT
* * ** * * *** * *
1800 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGATAAGATATGC-AT
1 AGGAAGACAAGATCTACCATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTAT
1864 CTTCGATCCACTTCGCTACCAATAT
65 CTTCGATCCACTTCGCTACCAATAT
* * * *
1889 AGGAAGACAGGATCTACCATCTTCGATCTGCTTCACGCCAATACATAAAGACAAGATCTGCTTTC
1 AGGAAGACAAGATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATC
*
1954 TTCGATCCATTTCGCTACCAATAT
66 TTCGATCCACTTCGCTACCAATAT
* *
1978 AGGAAGCCAGGATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC-ATC
1 AGGAAGACAAGATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATC
*
2042 TTCGATCCACTAC-CTACCAATAT
66 TTCGATCCACTTCGCTACCAATAT
* ** * * *
2065 AGGAAGACAAGATCTGCTTTCTTCGATCTACTT--CGCCACTAATATGGGAAGACAATATCTGC-
1 AGGAAGACAAGATCTACCATCTTCGATCTACTTCACGCCAAT-ACAT--GAAGACAAGATCTGCT
2127 ATCTTCGATCCACTTCGCTACCAATAT
63 ATCTTCGATCCACTTCGCTACCAATAT
* * * *
2154 AGAAAGATAGGATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
1 AGGAAGACAAGATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATC
*
2219 TTCGATACACTTCGCTACCAATAT
66 TTCGATCCACTTCGCTACCAATAT
* * * * *
2243 AGGAAGACAGGATCTACCATCTTAGATCTACTTTACGCCAATACATGAAGACAAGATCTGTTTTC
1 AGGAAGACAAGATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATC
* *
2308 TTCGATCTACTTCGCCACCAATAT
66 TTCGATCCACTTCGCTACCAATAT
* * * * * * * * *
2332 GGGAAGACAAGATCT-GCACCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTAT
1 AGGAAGACAAGATCTACCATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTAT
2396 CTTC
65 CTTC
2400 ACTGATCTGC
Statistics
Matches: 653, Mismatches: 109, Indels: 30
0.82 0.14 0.04
Matches are distributed among these distances:
85 6 0.01
86 3 0.00
87 38 0.06
88 135 0.21
89 461 0.71
90 4 0.01
91 6 0.01
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (89 bp):
AGGAAGACAAGATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATC
TTCGATCCACTTCGCTACCAATAT
Found at i:1770 original size:133 final size:132
Alignment explanation
Indices: 1533--2399 Score: 708
Period size: 133 Copynumber: 6.5 Consensus size: 132
1523 GCTGTCAGTG
* * * * * * *
1533 CAGGAAGGCAAGATCTACTATCTTCGATCTACTTCACGCTAATACATGAAGACAATATCTGCTTT
1 CAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATATATGAAGACAAGATCTGC-AT
* * * * * * * * * *
1598 CTTCGATCTACTTCGCCACCAGTATGGGAACACAAGATCT-GCATATTCGATCCACTTCGCTACC
65 CTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTACCATCTTCGATCTACTTCAC-ACC
1662 AATA
129 AATA
* * * ** * * *
1666 TAGGAAGACAGGATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATATGCTTT
1 CAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATATATGAAGACAAGATCTGC-AT
* * * *
1731 CTTCGATCCACTTCGCTACCAATATAGGAAGATAGGATCTATCATCTTCGATCTACTTTACGCCA
65 CTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTACCATCTTCGATCTACTTCACACCA
1796 ATA
130 ATA
* * * ** * *
1799 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGATAAGATATGCAT
1 CAGGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCCAATATATGAAGACAAGATCTGCAT
* *
1864 CTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTACCATCTTCGATCTGCTTCACGCCA
65 CTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTACCATCTTCGATCTACTTCACACCA
1929 ATA
130 ATA
** * * * * * * * *
1932 CATAAAGACAAGATCTGCTTTCTTCGATCCATTTCGCTACCAATATAGGAAGCCAGGATCTACCA
1 CAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCCAATATATGAAGACAAGATCT-GCA
* * * * * * * * *
1997 TCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCT-GCATCTTCGATCCACTAC-CTAC
64 TCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTACCATCTTCGATCTACTTCAC-AC
2059 CAATA
128 CAATA
* * *
2064 TAGGAAGACAAGATCTGCTTTCTTCGATCTACTT--CGCCACTAATATGGGAAGACAATATCTGC
1 CAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAAT-ATAT--GAAGACAAGATCTGC
* * *
2127 ATCTTCGATCCACTTCGCTACCAATATAGAAAGATAGGATCTACCATCTTCGATCTACTTCACGC
63 ATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTACCATCTTCGATCTACTTCACAC
2192 CAATA
128 CAATA
* * * * * *
2197 CATGAAGACAAGATCTGCTTTCTTCGATAC-ACTTCGCTACCAATATAGGAAGACAGGATCTACC
1 CAGGAAGACAAGATCTGCTTTCTTCGAT-CTACTTCAC-GCCAATATATGAAGACAAGATCT-GC
* * ** * * * * **** *
2261 ATCTTAGATCTACTTTAC-GCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCA
63 ATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTACCATCTTCGATCTACTTC-ACA
2325 CCAATA
127 CCAATA
** ** * * * * *
2331 TGGGAAGACAAGATCTGC-ACCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTA
1 CAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCCAATATATGAAGACAAGATCTGC-A
2395 TCTTC
64 TCTTC
2400 ACTGATCTGC
Statistics
Matches: 602, Mismatches: 113, Indels: 38
0.80 0.15 0.05
Matches are distributed among these distances:
129 4 0.01
130 4 0.01
131 18 0.03
132 79 0.13
133 397 0.66
134 92 0.15
135 4 0.01
136 4 0.01
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (132 bp):
CAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATATATGAAGACAAGATCTGCATC
TTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTACCATCTTCGATCTACTTCACACCAA
TA
Found at i:1894 original size:222 final size:221
Alignment explanation
Indices: 1534--2142 Score: 891
Period size: 222 Copynumber: 2.8 Consensus size: 221
1524 CTGTCAGTGC
* * * *
1534 AGGAAGGCAAGATCTACTATCTTCGATCTACTTCACGCTAATACATGAAGACAATATCTGCTTTC
1 AGGAAGACAGGATCTAC-ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
* * *
1599 TTCGATCTACTTCGCCACCAGTATGGGAACACAAGATCTGCATATTCGATCCACTTCGCTACCAA
65 TTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAA
*
1664 TATAGGAAGACAGGATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATATGCT
130 TATAGGAAGACAGGATCTACCATCTTCGATCTACTTCACGCCAATACATAAAGACAAGATATGCT
1729 TTCTTCGATCCACTTCGCTACCAATAT
195 TTCTTCGATCCACTTCGCTACCAATAT
* *
1756 AGGAAGATAGGATCTATCATCTTCGATCTACTTTACGCCAATACATGAAGACAAGATCTGCTTTC
1 AGGAAGACAGGATCTA-CATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
* *
1821 TTCGATCTACTTCGCCACCAATATGGGAAGATAAGATATGCATCTTCGATCCACTTCGCTACCAA
65 TTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAA
* *
1886 TATAGGAAGACAGGATCTACCATCTTCGATCTGCTTCACGCCAATACATAAAGACAAGATCTGCT
130 TATAGGAAGACAGGATCTACCATCTTCGATCTACTTCACGCCAATACATAAAGACAAGATATGCT
*
1951 TTCTTCGATCCATTTCGCTACCAATAT
195 TTCTTCGATCCACTTCGCTACCAATAT
* *
1978 AGGAAGCCAGGATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC-ATC
1 AGGAAGACAGGATCTA-CATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
* * * * * * * *
2042 TTCGATCCACTAC-CTACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACTA
65 TTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCGCTACCA
* ** * *
2106 ATATGGGAAGACAATATCT-GCATCTTCGATCCACTTC
129 ATATAGGAAGACAGGATCTACCATCTTCGATCTACTTC
2143 GCTACCAATA
Statistics
Matches: 349, Mismatches: 36, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
220 38 0.11
221 48 0.14
222 262 0.75
223 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (221 bp):
AGGAAGACAGGATCTACATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
TCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAAT
ATAGGAAGACAGGATCTACCATCTTCGATCTACTTCACGCCAATACATAAAGACAAGATATGCTT
TCTTCGATCCACTTCGCTACCAATAT
Found at i:2095 original size:265 final size:267
Alignment explanation
Indices: 1793--2399 Score: 932
Period size: 265 Copynumber: 2.3 Consensus size: 267
1783 CTACTTTACG
* * *
1793 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGATAAGAT
1 CCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
* *
1858 ATGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTACCATCTTCGATCTGCTTC
66 ATGCATCTTCGATCCACTTCGCTACCAATATAGAAAGACAGGATCTACCATCTTCGATCTACTTC
* * *
1923 ACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATCCATTTCGCTACCAATATAGGAAGCCAG
131 ACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATACACTTCGCTACCAATATAGGAAGACAG
*
1988 GATCTACCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG-CATCTTCGATCCAC
196 GATCTACCATCTTAGATCTACTTCACGCCAATACATGAAGACAAGATCTGTCATCTTCGATCCAC
*
2052 TAC-CTA
261 TACGCCA
* *
2058 CCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACTAATATGGGAAGACAATAT
1 CCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
* *
2123 CTGCATCTTCGATCCACTTCGCTACCAATATAGAAAGATAGGATCTACCATCTTCGATCTACTTC
66 ATGCATCTTCGATCCACTTCGCTACCAATATAGAAAGACAGGATCTACCATCTTCGATCTACTTC
*
2188 ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATACACTTCGCTACCAATATAGGAAGACAG
131 ACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATACACTTCGCTACCAATATAGGAAGACAG
* ** *
2253 GATCTACCATCTTAGATCTACTTTACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTAC
196 GATCTACCATCTTAGATCTACTTCACGCCAATACATGAAGACAAGATCTGTCATCTTCGATCCAC
*
2318 TTCGCCA
261 TACGCCA
* ** * * * *
2325 CCAATATGGGAAGACAAGATCTGC-ACCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGAT
1 CCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
*
2389 CTGCTATCTTC
66 ATGC-ATCTTC
2400 ACTGATCTGC
Statistics
Matches: 310, Mismatches: 29, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
265 230 0.74
266 49 0.16
267 31 0.10
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (267 bp):
CCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
ATGCATCTTCGATCCACTTCGCTACCAATATAGAAAGACAGGATCTACCATCTTCGATCTACTTC
ACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATACACTTCGCTACCAATATAGGAAGACAG
GATCTACCATCTTAGATCTACTTCACGCCAATACATGAAGACAAGATCTGTCATCTTCGATCCAC
TACGCCA
Done.