Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 108 of 208
Found at i:32715299 original size:18 final size:19
Alignment explanation
Indices: 32715263--32715299 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32715253 ATTAATAAGC
32715263 AATACATATTGTATTATTA
1 AATACATATTGTATTATTA
*
32715282 AATACATGTTGT-TTATTA
1 AATACATATTGTATTATTA
32715300 TTACACATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (19 bp):
AATACATATTGTATTATTA
Found at i:32716390 original size:15 final size:16
Alignment explanation
Indices: 32716370--32716400 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
32716360 TATAGCTTAA
32716370 TCATTATAA-TTCCTT
1 TCATTATAATTTCCTT
32716385 TCATTATAATTTCCTT
1 TCATTATAATTTCCTT
32716401 AGTAAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.26, C:0.19, G:0.00, T:0.55
Consensus pattern (16 bp):
TCATTATAATTTCCTT
Found at i:32721411 original size:14 final size:13
Alignment explanation
Indices: 32721380--32721435 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
32721370 ATCAAAAGCT
32721380 CAAAAAATTAAAA
1 CAAAAAATTAAAA
*
32721393 CAAAAAATTAATAT
1 CAAAAAATTAA-AA
* *
32721407 GAAAAAATGAAAA
1 CAAAAAATTAAAA
* *
32721420 -ACAAAATTAAAC
1 CAAAAAATTAAAA
32721432 CAAA
1 CAAA
32721436 TCGAATTATA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
12 9 0.27
13 14 0.42
14 10 0.30
ACGTcount: A:0.71, C:0.09, G:0.04, T:0.16
Consensus pattern (13 bp):
CAAAAAATTAAAA
Found at i:32726926 original size:17 final size:18
Alignment explanation
Indices: 32726904--32726937 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32726894 ATTATATTTT
32726904 TATAAA-AAATTTAAAAA
1 TATAAATAAATTTAAAAA
*
32726921 TATAAATATATTTAAAA
1 TATAAATAAATTTAAAA
32726938 CGAATTTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TATAAATAAATTTAAAAA
Found at i:32728029 original size:44 final size:44
Alignment explanation
Indices: 32727966--32728056 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
32727956 AACTATGTTT
*
32727966 TTAGTTTCTCACTTAAACTCTGATTAGCGTAGATTTTTTTAATA
1 TTAGTTTCTCACTTAAACTCTGATTAGCGTAGATTATTTTAATA
* * *
32728010 TTAGTTT-TCCACTTAAACTCTTATTAGTGTAGGTTATTTTAATA
1 TTAGTTTCT-CACTTAAACTCTGATTAGCGTAGATTATTTTAATA
32728054 TTA
1 TTA
32728057 TTTGACCTAC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 1 0.02
44 41 0.98
ACGTcount: A:0.27, C:0.12, G:0.11, T:0.49
Consensus pattern (44 bp):
TTAGTTTCTCACTTAAACTCTGATTAGCGTAGATTATTTTAATA
Found at i:32730814 original size:38 final size:36
Alignment explanation
Indices: 32730724--32730820 Score: 113
Period size: 38 Copynumber: 2.6 Consensus size: 36
32730714 TCTATTAAAT
* * * *
32730724 AAAAATTAACGCATAATTATAATTTTAGGAGTAATA
1 AAAAATAAACACATAATTGTAATTTTAGGACTAATA
* *
32730760 AAAAATAAGCACATAATTGTAATCTTTTGGACTAATAA
1 AAAAATAAACACATAATTGTAAT-TTTAGGACTAAT-A
*
32730798 AAAAATAAACATATAATTGTAAT
1 AAAAATAAACACATAATTGTAAT
32730821 ATATGAGACT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
36 19 0.37
37 10 0.20
38 22 0.43
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.32
Consensus pattern (36 bp):
AAAAATAAACACATAATTGTAATTTTAGGACTAATA
Found at i:32732249 original size:21 final size:22
Alignment explanation
Indices: 32732224--32732266 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32732214 TTCTATAAAA
32732224 AAACT-TATTTAATATA-ATTAT
1 AAACTATATTTAA-ATAGATTAT
*
32732245 AAACTATGTTTAAATAGATTAT
1 AAACTATATTTAAATAGATTAT
32732267 CTATCTAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (22 bp):
AAACTATATTTAAATAGATTAT
Found at i:32733142 original size:14 final size:14
Alignment explanation
Indices: 32733123--32733162 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
32733113 TTGATTGCCA
32733123 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
32733137 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
32733151 GGAAAATGTTTT
1 GTAAAATGTTTT
32733163 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:32733171 original size:20 final size:20
Alignment explanation
Indices: 32733146--32733185 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32733136 CGTAAAATGA
*
32733146 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
32733166 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
32733186 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:32733175 original size:34 final size:35
Alignment explanation
Indices: 32733131--32733197 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
32733121 CAGTAAAATG
*
32733131 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
32733165 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
32733198 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:32733201 original size:14 final size:15
Alignment explanation
Indices: 32733125--32733201 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
32733115 GATTGCCAGT
* *
32733125 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
32733139 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
32733153 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
32733173 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
32733188 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
32733202 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:32733262 original size:32 final size:32
Alignment explanation
Indices: 32733178--32733263 Score: 93
Period size: 33 Copynumber: 2.6 Consensus size: 32
32733168 TCTGTAAAAT
* * **
32733178 GATTTACTGGAAAATATTTTCTGGTGTTTGATT
1 GATTT-CTTGAAAATATTTTCTGCTGTTTGACA
*
32733211 GAATTT-GTGTAAAATATTTTCTGCTGTTTGACA
1 G-ATTTCTTG-AAAATATTTTCTGCTGTTTGACA
32733244 GATTTCTTGAAAATATTTTC
1 GATTTCTTGAAAATATTTTC
32733264 CGGAAAAGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
32 16 0.36
33 24 0.55
34 4 0.09
ACGTcount: A:0.27, C:0.08, G:0.17, T:0.48
Consensus pattern (32 bp):
GATTTCTTGAAAATATTTTCTGCTGTTTGACA
Found at i:32733841 original size:18 final size:18
Alignment explanation
Indices: 32733820--32733858 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
32733810 GTTGTATCTT
32733820 TAATTAAATTATTATCCA
1 TAATTAAATTATTATCCA
32733838 TAATTAAATTATTATCCA
1 TAATTAAATTATTATCCA
32733856 TAA
1 TAA
32733859 AGTTGGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (18 bp):
TAATTAAATTATTATCCA
Found at i:32733975 original size:12 final size:12
Alignment explanation
Indices: 32733958--32733983 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32733948 AATCGGTGTA
32733958 AGAAAAAATTTT
1 AGAAAAAATTTT
32733970 AGAAAAAATTTT
1 AGAAAAAATTTT
32733982 AG
1 AG
32733984 TTATTCTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.31
Consensus pattern (12 bp):
AGAAAAAATTTT
Found at i:32734533 original size:14 final size:13
Alignment explanation
Indices: 32734504--32734530 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32734494 AGAAGGTAAG
32734504 ACAGATACTTAAA
1 ACAGATACTTAAA
32734517 ACAGATACTTAAA
1 ACAGATACTTAAA
32734530 A
1 A
32734531 ACATGAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (13 bp):
ACAGATACTTAAA
Found at i:32735549 original size:12 final size:12
Alignment explanation
Indices: 32735532--32735585 Score: 64
Period size: 12 Copynumber: 4.9 Consensus size: 12
32735522 CCAAATCAAC
32735532 GGAGAACGAAAG
1 GGAGAACGAAAG
32735544 GGAGAACGAAA-
1 GGAGAACGAAAG
32735555 GG-G-A-G-AAG
1 GGAGAACGAAAG
*
32735563 GGAGAACGAACG
1 GGAGAACGAAAG
32735575 GGAGAACGAAA
1 GGAGAACGAAA
32735586 CCAGATCGGT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
7 2 0.06
8 3 0.09
9 2 0.06
10 2 0.06
11 3 0.09
12 23 0.66
ACGTcount: A:0.48, C:0.09, G:0.43, T:0.00
Consensus pattern (12 bp):
GGAGAACGAAAG
Found at i:32735563 original size:19 final size:19
Alignment explanation
Indices: 32735541--32735580 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
32735531 CGGAGAACGA
32735541 AAGGGAGAACGAAAGGGAG
1 AAGGGAGAACGAAAGGGAG
*
32735560 AAGGGAGAACGAACGGGAG
1 AAGGGAGAACGAAAGGGAG
32735579 AA
1 AA
32735581 CGAAACCAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.47, C:0.07, G:0.45, T:0.00
Consensus pattern (19 bp):
AAGGGAGAACGAAAGGGAG
Found at i:32741158 original size:16 final size:16
Alignment explanation
Indices: 32741137--32741191 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
32741127 TTTGGTTTAT
*
32741137 TGTAATGGAATAGGGC
1 TGTAATGGAATAGAGC
**
32741153 TGTAATTCAATAGAGC
1 TGTAATGGAATAGAGC
*
32741169 TGTAATGGAATAGAGT
1 TGTAATGGAATAGAGC
32741185 TGTAATG
1 TGTAATG
32741192 TAATGCCCTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (16 bp):
TGTAATGGAATAGAGC
Found at i:32746118 original size:156 final size:156
Alignment explanation
Indices: 32745825--32746136 Score: 489
Period size: 156 Copynumber: 2.0 Consensus size: 156
32745815 GTTTACTCTT
* *
32745825 AGACCGAGGATGAACATGATGAACATCTTAGAGTAGTGCTTCAGATACTTCGAGAGAAACAACTC
1 AGACCGAGGATGAACATGATGAACATATTAGAGTAGTGCTTCAGATACTTCAAGAGAAACAACTC
* * * *
32745890 TACGCTAAGTTGAGCAAGTGTGAGTTCTAGTTGTGATAGGTGACTTTTCTGGGGTACGTAGTTTC
66 TACGCTAAGTTGAGCAAGTGTGAGTTCTAGTTGCGAGAGGTGACTTTTCTAGGGCACGTAGTTTC
* *
32745955 TGCTGAGGTGATTTGAGTTTATCCTA
131 TGCTGAGGTAATTTGAATTTATCCTA
* * *
32745981 AGACCGAGGATGAGCATGATGAACATATTAGAGTAGTGCTTCAGATATTTCAAGAGAAACAACTT
1 AGACCGAGGATGAACATGATGAACATATTAGAGTAGTGCTTCAGATACTTCAAGAGAAACAACTC
* * *
32746046 TACGCTAAGTTGAGCAAGTGTGAGTTCTGGTTGCGAGAGGTGACTTTTCTAGGGCACGTGGTTTT
66 TACGCTAAGTTGAGCAAGTGTGAGTTCTAGTTGCGAGAGGTGACTTTTCTAGGGCACGTAGTTTC
*
32746111 TGTTGAGGTAATTTGAATTTATCCTA
131 TGCTGAGGTAATTTGAATTTATCCTA
32746137 GAAAGATTAA
Statistics
Matches: 141, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
156 141 1.00
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.32
Consensus pattern (156 bp):
AGACCGAGGATGAACATGATGAACATATTAGAGTAGTGCTTCAGATACTTCAAGAGAAACAACTC
TACGCTAAGTTGAGCAAGTGTGAGTTCTAGTTGCGAGAGGTGACTTTTCTAGGGCACGTAGTTTC
TGCTGAGGTAATTTGAATTTATCCTA
Found at i:32756652 original size:27 final size:27
Alignment explanation
Indices: 32756593--32756655 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
32756583 CTCAAGCTGA
32756593 TATAAAATGACTGTTATGCCCCCACGT
1 TATAAAATGACTGTTATGCCCCCACGT
** * *
32756620 GGTAAAATGACTGTTATGCCCCTATGT
1 TATAAAATGACTGTTATGCCCCCACGT
32756647 TATAAAATG
1 TATAAAATG
32756656 GTTGTACGCT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (27 bp):
TATAAAATGACTGTTATGCCCCCACGT
Found at i:32756977 original size:6 final size:6
Alignment explanation
Indices: 32756966--32756990 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32756956 TAAGGCCTAC
32756966 ACTGAT ACTGAT ACTGAT ACTGAT A
1 ACTGAT ACTGAT ACTGAT ACTGAT A
32756991 TTGTAATGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (6 bp):
ACTGAT
Found at i:32763063 original size:40 final size:38
Alignment explanation
Indices: 32763019--32763152 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 38
32763009 CCAGTTTGGT
32763019 ACCCAGTGCCTCATCGGATAATTCAAAGTAATAATTTGAC
1 ACCCAGTGCCTCATCGGATAA-TCAAAGTAATAA-TTGAC
* * * * *
32763059 ACCCAGTGTCTCATCGGCTAAACCGAAGT-A-AATTGGC
1 ACCCAGTGCCTCATCGGAT-AATCAAAGTAATAATTGAC
* *
32763096 ACCCAATGCCTCATCGAATTAATCTAAAGTAATAAATTGAC
1 ACCCAGTGCCTCATCGGA-TAATC-AAAGTAAT-AATTGAC
*
32763137 ACCCAGTGTCTCATCG
1 ACCCAGTGCCTCATCG
32763153 ACTCAAACTT
Statistics
Matches: 74, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
37 21 0.28
38 7 0.09
39 2 0.03
40 22 0.30
41 22 0.30
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (38 bp):
ACCCAGTGCCTCATCGGATAATCAAAGTAATAATTGAC
Found at i:32764179 original size:26 final size:25
Alignment explanation
Indices: 32764120--32764167 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
32764110 TTGTTTTGTT
32764120 TTAATT-ATAATAATATATATTTAC
1 TTAATTAATAATAATATATATTTAC
32764144 TTAATTAATAAGTAATATATATTT
1 TTAATTAATAA-TAATATATATTT
32764168 TATTATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (25 bp):
TTAATTAATAATAATATATATTTAC
Found at i:32767515 original size:22 final size:22
Alignment explanation
Indices: 32767490--32767666 Score: 160
Period size: 22 Copynumber: 8.0 Consensus size: 22
32767480 AATTGTATAG
* *
32767490 GATTAGCATTATGGTGCCTACT
1 GATTAGCACTACGGTGCCTACT
* **
32767512 GATTTGCACTATAGTGCCTACT
1 GATTAGCACTACGGTGCCTACT
* *
32767534 AATTAGCACTACGGTGCGTACT
1 GATTAGCACTACGGTGCCTACT
* *
32767556 GATTTGCACTACAGTGCCTACT
1 GATTAGCACTACGGTGCCTACT
* * *
32767578 -ACTCAGCACTTCGGTACCTACT
1 GA-TTAGCACTACGGTGCCTACT
*
32767600 GATTTGCACTACGGTGCCTACT
1 GATTAGCACTACGGTGCCTACT
* * *
32767622 AATCAGCACTTCGGTGCCTACT
1 GATTAGCACTACGGTGCCTACT
*
32767644 -ATTTAAGCACTTCGGTGCCTACT
1 GA-TT-AGCACTACGGTGCCTACT
32767667 AGTGTGGTGT
Statistics
Matches: 125, Mismatches: 26, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
21 2 0.02
22 104 0.83
23 19 0.15
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (22 bp):
GATTAGCACTACGGTGCCTACT
Found at i:32767556 original size:44 final size:44
Alignment explanation
Indices: 32767502--32767667 Score: 217
Period size: 44 Copynumber: 3.8 Consensus size: 44
32767492 TTAGCATTAT
* *
32767502 GGTGCCTACTGATTTGCACTATAGTGCCTACTAATTAGCACTAC
1 GGTGCCTACTGATTTGCACTACAGTGCCTACTAATCAGCACTAC
* * *
32767546 GGTGCGTACTGATTTGCACTACAGTGCCTACTACTCAGCACTTC
1 GGTGCCTACTGATTTGCACTACAGTGCCTACTAATCAGCACTAC
* * *
32767590 GGTACCTACTGATTTGCACTACGGTGCCTACTAATCAGCACTTC
1 GGTGCCTACTGATTTGCACTACAGTGCCTACTAATCAGCACTAC
* *
32767634 GGTGCCTACT-ATTTAAGCACTTCGGTGCCTACTA
1 GGTGCCTACTGATTT--GCACTACAGTGCCTACTA
32767668 GTGTGGTGTA
Statistics
Matches: 109, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
43 4 0.04
44 88 0.81
45 17 0.16
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (44 bp):
GGTGCCTACTGATTTGCACTACAGTGCCTACTAATCAGCACTAC
Found at i:32782223 original size:21 final size:21
Alignment explanation
Indices: 32782199--32782247 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 21
32782189 AGCAAAGTAG
32782199 ACACAGCC-GTGTGGCTAAATC
1 ACAC-GCCTGTGTGGCTAAATC
32782220 ACACGCCTGTGTGGCTAAATC
1 ACACGCCTGTGTGGCTAAATC
32782241 ACACGCC
1 ACACGCC
32782248 CATGTAGCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 3 0.11
21 24 0.89
ACGTcount: A:0.27, C:0.33, G:0.22, T:0.18
Consensus pattern (21 bp):
ACACGCCTGTGTGGCTAAATC
Found at i:32784509 original size:30 final size:29
Alignment explanation
Indices: 32784475--32784591 Score: 155
Period size: 30 Copynumber: 4.0 Consensus size: 29
32784465 TCTAGCATCC
* *
32784475 CCATTCAGCTCCTTCAATTACATGCATGCT
1 CCATTCAGCTCCCT-AAATACATGCATGCT
* *
32784505 CCATTCAGCTCCCTAAATTCATAC-TGCT
1 CCATTCAGCTCCCTAAATACATGCATGCT
*
32784533 CCATTCAGCTCCCTAAATACATGCATGGCC
1 CCATTCAGCTCCCTAAATACATGCAT-GCT
*
32784563 CCATTCAGCTCCCTAAACACATGCATGCT
1 CCATTCAGCTCCCTAAATACATGCATGCT
32784592 TTAATTCACC
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
28 26 0.34
29 10 0.13
30 40 0.53
ACGTcount: A:0.26, C:0.36, G:0.10, T:0.28
Consensus pattern (29 bp):
CCATTCAGCTCCCTAAATACATGCATGCT
Found at i:32784599 original size:30 final size:30
Alignment explanation
Indices: 32784494--32784589 Score: 94
Period size: 28 Copynumber: 3.3 Consensus size: 30
32784484 TCCTTCAATT
*
32784494 ACATGCAT-GCTCC-ATTCAGCTCCCTAAAT
1 ACATGCATGGC-CCAATTCAGCTCCCTAAAC
* * *
32784523 TCATAC-T-GCTCC-ATTCAGCTCCCTAAAT
1 ACATGCATGGC-CCAATTCAGCTCCCTAAAC
*
32784551 ACATGCATGGCCCCATTCAGCTCCCTAAAC
1 ACATGCATGGCCCAATTCAGCTCCCTAAAC
32784581 ACATGCATG
1 ACATGCATG
32784590 CTTTAATTCA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
28 26 0.44
29 7 0.12
30 26 0.44
ACGTcount: A:0.27, C:0.35, G:0.11, T:0.26
Consensus pattern (30 bp):
ACATGCATGGCCCAATTCAGCTCCCTAAAC
Found at i:32787381 original size:21 final size:21
Alignment explanation
Indices: 32787315--32787397 Score: 62
Period size: 21 Copynumber: 4.0 Consensus size: 21
32787305 AAAATAGGGC
* * *
32787315 CACACGACCGTGTAAATGATA
1 CACACGACCGTGTGACTGAGA
* * *
32787336 CACATGCCCGTGTGAGTGA-A
1 CACACGACCGTGTGACTGAGA
*
32787356 GCACACGGCCGTGTGACTGAGA
1 -CACACGACCGTGTGACTGAGA
*
32787378 CACAC-ATCTGTGTGACTGAG
1 CACACGA-CCGTGTGACTGAG
32787398 TTACATGGTT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
20 1 0.02
21 48 0.96
22 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.19
Consensus pattern (21 bp):
CACACGACCGTGTGACTGAGA
Found at i:32787504 original size:21 final size:21
Alignment explanation
Indices: 32787480--32787520 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
32787470 GTAGACACGG
32787480 TCGTGTGGCT-AAATCACACAC
1 TCGTGTGGCTGAAAT-ACACAC
32787501 TCGTGTGGCTGAAATACACA
1 TCGTGTGGCTGAAATACACA
32787521 ACCATGTCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (21 bp):
TCGTGTGGCTGAAATACACAC
Found at i:32789729 original size:21 final size:22
Alignment explanation
Indices: 32789699--32789739 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
32789689 ATTATTTGAT
*
32789699 TAAATTTTTA-AAAAAAATTCA
1 TAAATATTTATAAAAAAATTCA
*
32789720 TAAATATTTATACAAAAATT
1 TAAATATTTATAAAAAAATT
32789740 AAAAGTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
TAAATATTTATAAAAAAATTCA
Found at i:32791528 original size:5 final size:5
Alignment explanation
Indices: 32791515--32791558 Score: 79
Period size: 5 Copynumber: 8.8 Consensus size: 5
32791505 GAAGAGAAAA
*
32791515 GAGGA GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG GAGG
1 GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG GAGG
32791559 AACGACTGGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.23, C:0.00, G:0.77, T:0.00
Consensus pattern (5 bp):
GAGGG
Found at i:32796507 original size:27 final size:27
Alignment explanation
Indices: 32796472--32796855 Score: 341
Period size: 27 Copynumber: 14.2 Consensus size: 27
32796462 AGAGGTCGAT
* * *
32796472 AAATAATCGAATTACCCCCATAGGATA
1 AAATGATCGAATTACCCCCACAGGGTA
32796499 AAATGATCGAATTACCCCCCCACAGGGTA
1 AAATGATCGAATTA--CCCCCACAGGGTA
*
32796528 AAATGATCGAATTACCCCCACAAGG-A
1 AAATGATCGAATTACCCCCACAGGGTA
* *
32796554 AAATTA-CTGAATTACCCTCACAGGGTA
1 AAATGATC-GAATTACCCCCACAGGGTA
* * * *
32796581 AAATGACCGAATTAGCCTCACAGGG-G
1 AAATGATCGAATTACCCCCACAGGGTA
* ** *
32796607 AAATTATTAAATTACCCCCACAAGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
**
32796634 AAATGATCGAATTACCTTCACAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
*
32796661 AAATGACCGAATTACCCCCACAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
*
32796688 AAAT-AACTGAATTACCCCCACAGGGTA
1 AAATGATC-GAATTACCCCCACAGGGTA
* * * * *
32796715 AAATAACCGAAATACCCCTATAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
* *
32796742 AAATGA-CTGAAATACCCCCATAGGGTA
1 AAATGATC-GAATTACCCCCACAGGGTA
* * * *
32796769 AAATGATCGAAATATCCTCATAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
* * * *
32796796 ACATGA-CTGAAATACCCCTATAGGGTA
1 AAATGATC-GAATTACCCCCACAGGGTA
* *
32796823 AAATGACCGGAA-TACCCCCATAGGGTA
1 AAATGATC-GAATTACCCCCACAGGGTA
32796850 AAATGA
1 AAATGA
32796856 CTGTTATACC
Statistics
Matches: 302, Mismatches: 43, Indels: 24
0.82 0.12 0.07
Matches are distributed among these distances:
25 1 0.00
26 43 0.14
27 225 0.75
28 8 0.03
29 25 0.08
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (27 bp):
AAATGATCGAATTACCCCCACAGGGTA
Found at i:32796883 original size:81 final size:79
Alignment explanation
Indices: 32796655--32796885 Score: 252
Period size: 81 Copynumber: 2.8 Consensus size: 79
32796645 TTACCTTCAC
* * * *
32796655 AGGGTAAAATGACC-GAATTACCCCCACAGGGTAAAATAACTGAATTA-CCCCCACAGGGTAAAA
1 AGGGTAAAATGACCGGAA-TACCCCCATAGGGTAAAATGACTG--TTATACCCC-TAGGGTAAAA
*
32796718 TAACCGAAATACCCCTAT
62 TGACCGAAATACCCCTAT
* * ** * *
32796736 AGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGA-TCGAAATATCCTCATAGGGTAACAT
1 AGGGTAAAATGACCGGAATACCCCCATAGGGTAAAATGACT-GTTATA-CC-CCTAGGGTAAAAT
*
32796800 GACTGAAATACCCCTAT
63 GACCGAAATACCCCTAT
32796817 AGGGTAAAATGACCGGAATACCCCCATAGGGTAAAATGACTGTTATACCCCTAGGAGATAAAATG
1 AGGGTAAAATGACCGGAATACCCCCATAGGGTAAAATGACTGTTATACCCCTAGG-G-TAAAATG
32796882 ACCG
64 ACCG
32796886 TTATGGCCTT
Statistics
Matches: 123, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
79 6 0.05
80 4 0.03
81 109 0.89
82 4 0.03
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.19
Consensus pattern (79 bp):
AGGGTAAAATGACCGGAATACCCCCATAGGGTAAAATGACTGTTATACCCCTAGGGTAAAATGAC
CGAAATACCCCTAT
Found at i:32796888 original size:27 final size:27
Alignment explanation
Indices: 32796655--32796889 Score: 172
Period size: 27 Copynumber: 8.7 Consensus size: 27
32796645 TTACCTTCAC
* *
32796655 AGGGTAAAATGACCG-AATTACCCCCAC
1 AGGGTAAAATGACCGTTA-TACCCCCAT
* * * *
32796682 AGGGTAAAATAACTG-AATTACCCCCAC
1 AGGGTAAAATGACCGTTA-TACCCCCAT
* ** *
32796709 AGGGTAAAATAACCGAAATACCCCTAT
1 AGGGTAAAATGACCGTTATACCCCCAT
* **
32796736 AGGGTAAAATGACTGAAATACCCCCAT
1 AGGGTAAAATGACCGTTATACCCCCAT
* ** * *
32796763 AGGGTAAAATGATCGAAATATCCTCAT
1 AGGGTAAAATGACCGTTATACCCCCAT
* * ** *
32796790 AGGGTAACATGACTGAAATACCCCTAT
1 AGGGTAAAATGACCGTTATACCCCCAT
**
32796817 AGGGTAAAATGACCGGAATACCCCCAT
1 AGGGTAAAATGACCGTTATACCCCCAT
*
32796844 AGGGTAAAATGACTGTTATA-CCCC-T
1 AGGGTAAAATGACCGTTATACCCCCAT
32796869 AGGAGATAAAATGACCGTTAT
1 AGG-G-TAAAATGACCGTTAT
32796890 GGCCTTATGC
Statistics
Matches: 179, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
25 4 0.02
26 5 0.03
27 168 0.94
28 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (27 bp):
AGGGTAAAATGACCGTTATACCCCCAT
Found at i:32797126 original size:26 final size:26
Alignment explanation
Indices: 32797078--32797164 Score: 95
Period size: 26 Copynumber: 3.3 Consensus size: 26
32797068 CCTACTAGTG
*
32797078 GCTTTGCCACATATACTATTACTGGCA
1 GCTTTGCTACA-ATACTATTACTGGCA
*
32797105 GCTTTGCTACAATACTGA-TACTAGCA
1 GCTTTGCTACAATACT-ATTACTGGCA
* * * *
32797131 GCTCTGCTGCGATGCTATTACTGGCA
1 GCTTTGCTACAATACTATTACTGGCA
32797157 GCTTTGCT
1 GCTTTGCT
32797165 GCGATATTGG
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
25 1 0.02
26 38 0.76
27 11 0.22
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (26 bp):
GCTTTGCTACAATACTATTACTGGCA
Found at i:32797165 original size:26 final size:26
Alignment explanation
Indices: 32797090--32797170 Score: 101
Period size: 26 Copynumber: 3.1 Consensus size: 26
32797080 TTTGCCACAT
* *
32797090 ATACTATTACTGGCAGCTTTGCTACA
1 ATACTATTACTGGCAGCTTTGCTGCG
* *
32797116 ATACTGA-TACTAGCAGCTCTGCTGCG
1 ATACT-ATTACTGGCAGCTTTGCTGCG
*
32797142 ATGCTATTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
32797168 ATA
1 ATA
32797171 TTGGTGTGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.02
26 43 0.96
27 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:32797313 original size:28 final size:28
Alignment explanation
Indices: 32797273--32797365 Score: 143
Period size: 28 Copynumber: 3.4 Consensus size: 28
32797263 ATTGCACTGG
*
32797273 ACTGTTTCTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
*
32797301 ACTGTTACTGTATTGGGCTAAGGCTCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
* *
32797329 AGTATTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
32797357 ACTG-TACTG
1 ACTGTTACTG
32797366 CTACTAAATA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
27 5 0.09
28 53 0.91
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:32800416 original size:52 final size:52
Alignment explanation
Indices: 32800338--32800446 Score: 209
Period size: 52 Copynumber: 2.1 Consensus size: 52
32800328 TCTTTCCATA
*
32800338 TGTGTCCCAATAGAGAATTGTTTTCTACATATAGTTCGGTTGAAAGTGGAGT
1 TGTGTCCCAATAGAGAATGGTTTTCTACATATAGTTCGGTTGAAAGTGGAGT
32800390 TGTGTCCCAATAGAGAATGGTTTTCTACATATAGTTCGGTTGAAAGTGGAGT
1 TGTGTCCCAATAGAGAATGGTTTTCTACATATAGTTCGGTTGAAAGTGGAGT
32800442 TGTGT
1 TGTGT
32800447 GCATGAGAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 56 1.00
ACGTcount: A:0.26, C:0.11, G:0.27, T:0.37
Consensus pattern (52 bp):
TGTGTCCCAATAGAGAATGGTTTTCTACATATAGTTCGGTTGAAAGTGGAGT
Found at i:32801234 original size:16 final size:16
Alignment explanation
Indices: 32801215--32801250 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
32801205 ACGTTTTGAA
32801215 GGTTCTTTATTTTTCT
1 GGTTCTTTATTTTTCT
32801231 GGTTCTTTATTTTTCT
1 GGTTCTTTATTTTTCT
32801247 GGTT
1 GGTT
32801251 TCAGGGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.06, C:0.11, G:0.17, T:0.67
Consensus pattern (16 bp):
GGTTCTTTATTTTTCT
Found at i:32807268 original size:55 final size:55
Alignment explanation
Indices: 32807177--32807296 Score: 152
Period size: 55 Copynumber: 2.2 Consensus size: 55
32807167 ATCATAAGTA
* * **
32807177 AACATATATAGAAATCTCTGAACAGCCTACCTGAGCCTCTGTAAAGCCATAATTT
1 AACATATATAGAAATCTCTGAACAACCGACCTGAGCCTCTACAAAGCCATAATTT
* * * *
32807232 AACATATATAGAAATCTCTGTACAACCGA-CTCGAGCCTCTACACAGTCATAGTTT
1 AACATATATAGAAATCTCTGAACAACCGACCT-GAGCCTCTACAAAGCCATAATTT
32807287 AACATATATA
1 AACATATATA
32807297 AGAATATCCG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 2 0.04
55 54 0.96
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.28
Consensus pattern (55 bp):
AACATATATAGAAATCTCTGAACAACCGACCTGAGCCTCTACAAAGCCATAATTT
Found at i:32811036 original size:19 final size:19
Alignment explanation
Indices: 32811012--32811088 Score: 91
Period size: 19 Copynumber: 4.0 Consensus size: 19
32811002 AGCAGGGTAA
*
32811012 ACTGGCACATAAAGTGCAT
1 ACTGGCACACAAAGTGCAT
*
32811031 ACTGGCGCACAAAGTGCAT
1 ACTGGCACACAAAGTGCAT
* **
32811050 ATTGGCACACAAAGTATAT
1 ACTGGCACACAAAGTGCAT
*
32811069 ATCTAGCACACAAAGTGCAT
1 A-CTGGCACACAAAGTGCAT
32811089 CTTGACATAT
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 33 0.70
20 14 0.30
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.21
Consensus pattern (19 bp):
ACTGGCACACAAAGTGCAT
Found at i:32812866 original size:15 final size:16
Alignment explanation
Indices: 32812848--32812881 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
32812838 AAATTAAATT
*
32812848 AATTAA-CTAGATGCA
1 AATTAACCTAAATGCA
32812863 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
32812879 AAT
1 AAT
32812882 AAGATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:32815311 original size:43 final size:41
Alignment explanation
Indices: 32815254--32815404 Score: 167
Period size: 43 Copynumber: 3.5 Consensus size: 41
32815244 GGCAGCGTTT
* * *
32815254 CTTTTACATAAACGCCACTAGAGAACATGACCTTTAGCAGC
1 CTTTTTCACAAACGCCACTAAAGAACATGACCTTTAGCAGC
* * *
32815295 ACTTTTATCACAAACGCCGCTAAAGAACATGACCATTAGCGGCGC
1 -CTTTT-TCACAAACGCCACTAAAGAACATGACCTTTAGC--AGC
* *
32815340 CTTTTTCACAAACGCCGCTAAAGAACATGACATTTAGCGAAGC
1 CTTTTTCACAAACGCCACTAAAGAACATGACCTTTAGC--AGC
*
32815383 CTTTTTCACAAACACCACTAAA
1 CTTTTTCACAAACGCCACTAAA
32815405 AGTACCGTTC
Statistics
Matches: 94, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
42 5 0.05
43 82 0.87
44 5 0.05
45 2 0.02
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (41 bp):
CTTTTTCACAAACGCCACTAAAGAACATGACCTTTAGCAGC
Found at i:32816799 original size:26 final size:26
Alignment explanation
Indices: 32816763--32816812 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
32816753 TCTTGACATA
*
32816763 ATTATCTGAGACATCTAAAGCAAATT
1 ATTATCCGAGACATCTAAAGCAAATT
*
32816789 ATTATCCGAGACCTCTAAAGCAAA
1 ATTATCCGAGACATCTAAAGCAAA
32816813 CCTCTCCTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (26 bp):
ATTATCCGAGACATCTAAAGCAAATT
Found at i:32818699 original size:84 final size:84
Alignment explanation
Indices: 32818558--32818725 Score: 327
Period size: 84 Copynumber: 2.0 Consensus size: 84
32818548 CCCAACATTT
32818558 CTACTTGATCTGTTCAGTCTTGTTTCAACATCTTCTAAATATCTAGAATAGAAAGTCATACACTC
1 CTACTTGATCTGTTCAGTCTTGTTTCAACATCTTCTAAATATCTAGAATAGAAAGTCATACACTC
32818623 CTCTGCCAAGTAACCTTCA
66 CTCTGCCAAGTAACCTTCA
*
32818642 CTACTTGGTCTGTTCAGTCTTGTTTCAACATCTTCTAAATATCTAGAATAGAAAGTCATACACTC
1 CTACTTGATCTGTTCAGTCTTGTTTCAACATCTTCTAAATATCTAGAATAGAAAGTCATACACTC
32818707 CTCTGCCAAGTAACCTTCA
66 CTCTGCCAAGTAACCTTCA
32818726 GCAATTGATC
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (84 bp):
CTACTTGATCTGTTCAGTCTTGTTTCAACATCTTCTAAATATCTAGAATAGAAAGTCATACACTC
CTCTGCCAAGTAACCTTCA
Found at i:32819592 original size:12 final size:12
Alignment explanation
Indices: 32819575--32819606 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
32819565 ATCTTTATCG
32819575 GATTCATCATCA
1 GATTCATCATCA
32819587 GATTCATCATCA
1 GATTCATCATCA
32819599 GATTCATC
1 GATTCATC
32819607 CATTGATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.34
Consensus pattern (12 bp):
GATTCATCATCA
Found at i:32821333 original size:9 final size:9
Alignment explanation
Indices: 32821319--32821731 Score: 182
Period size: 9 Copynumber: 44.6 Consensus size: 9
32821309 AAGTATAAAC
32821319 AAGTTATGT
1 AAGTTATGT
32821328 AAGTTATGAT
1 AAGTTATG-T
* * *
32821338 ATGATATAT
1 AAGTTATGT
*
32821347 -ATTTATGT
1 AAGTTATGT
32821355 -A-TTATGT
1 AAGTTATGT
32821362 AAGTTATGT
1 AAGTTATGT
*
32821371 GAGTTATGT
1 AAGTTATGT
*
32821380 AAATTATGAT
1 AAGTTATG-T
* * *
32821390 ACGATATAT
1 AAGTTATGT
*
32821399 -ATTTATGT
1 AAGTTATGT
32821407 -A-TTATGT
1 AAGTTATGT
32821414 AAGTTATGT
1 AAGTTATGT
*
32821423 GAGTTATGT
1 AAGTTATGT
*
32821432 AAGTTACGT
1 AAGTTATGT
32821441 AAGTTAT-T
1 AAGTTATGT
* * *
32821449 AAATGATAT
1 AAGTTATGT
* *
32821458 ACGTTATAT
1 AAGTTATGT
*
32821467 GAGTTATGT
1 AAGTTATGT
32821476 AAGTTATGAT
1 AAGTTATG-T
* *
32821486 ATGATATATAT
1 AAG-T-TATGT
32821497 AAGTTAT-T
1 AAGTTATGT
*
32821505 ATGTTATGT
1 AAGTTATGT
*
32821514 ATGTTATGT
1 AAGTTATGT
*
32821523 GAGTTATGT
1 AAGTTATGT
32821532 AAGTTATGAT
1 AAGTTATG-T
* *
32821542 ATGGTATATAT
1 A-AGT-TATGT
32821553 AAGTTAT-T
1 AAGTTATGT
32821561 AAGTTATGT
1 AAGTTATGT
*
32821570 GAGTTATGAT
1 AAGTTATG-T
*
32821580 ATGATATATGT
1 AAG-T-TATGT
*
32821591 AAGTAAT-T
1 AAGTTATGT
*
32821599 AAGTTATAT
1 AAGTTATGT
32821608 AAGTTATATGT
1 AAG-T-TATGT
*
32821619 GAGTTATGT
1 AAGTTATGT
32821628 AAGTTATGAT
1 AAGTTATG-T
* *
32821638 ATACATATATAT
1 A-A-GT-TATGT
32821650 AAGTTAT-T
1 AAGTTATGT
*
32821658 AAGTTAAAATCGA
1 AAGTT---AT-GT
* * *
32821671 AAATTCTTT
1 AAGTTATGT
32821680 AAAGTTATGT
1 -AAGTTATGT
*
32821690 AAATTATGT
1 AAGTTATGT
32821699 AAGTTATGT
1 AAGTTATGT
* * *
32821708 AAATTCTTT
1 AAGTTATGT
32821717 AAAGTTATGT
1 -AAGTTATGT
32821727 AAGTT
1 AAGTT
32821732 TTGATTTTTA
Statistics
Matches: 303, Mismatches: 69, Indels: 64
0.69 0.16 0.15
Matches are distributed among these distances:
7 12 0.04
8 46 0.15
9 163 0.54
10 40 0.13
11 22 0.07
12 13 0.04
13 7 0.02
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (9 bp):
AAGTTATGT
Found at i:32821368 original size:43 final size:43
Alignment explanation
Indices: 32821319--32821430 Score: 125
Period size: 52 Copynumber: 2.4 Consensus size: 43
32821309 AAGTATAAAC
*
32821319 AAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGT
1 AAGTTATGTAAGTTATGATACGATATATATTTATGTATTATGT
32821362 AAGTTATGTGAGTTATGTAAATTATGATACGATATATATTTATGTATTATGT
1 AAGTTATGT-A---A-G----TTATGATACGATATATATTTATGTATTATGT
*
32821414 AAGTTATGTGAGTTATG
1 AAGTTATGTAAGTTATG
32821431 TAAGTTACGT
Statistics
Matches: 58, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
43 14 0.24
44 1 0.02
47 2 0.03
48 2 0.03
52 39 0.67
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46
Consensus pattern (43 bp):
AAGTTATGTAAGTTATGATACGATATATATTTATGTATTATGT
Found at i:32821464 original size:35 final size:35
Alignment explanation
Indices: 32821425--32821493 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
32821415 AGTTATGTGA
* *
32821425 GTTATGTAAGTTACGTAAGTTATTAAATGATATAC
1 GTTATATAAGTTACGTAAGTTATGAAATGATATAC
* * *
32821460 GTTATATGAGTTATGTAAGTTATGATATGATATA
1 GTTATATAAGTTACGTAAGTTATGAAATGATATA
32821494 TATAAGTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.42
Consensus pattern (35 bp):
GTTATATAAGTTACGTAAGTTATGAAATGATATAC
Found at i:32821532 original size:152 final size:150
Alignment explanation
Indices: 32821320--32821663 Score: 434
Period size: 152 Copynumber: 2.3 Consensus size: 150
32821310 AGTATAAACA
32821320 AGTTATGTAAGTTATGATATGATATATAT---TTATGTA-TTATGTAAGTTATGTGAGTTATGTA
1 AGTTATGTAAGTTATGATATGATATATATAAGTTAT-TAGTTATGTAAGTTATGTGAGTTATGTA
*
32821381 AATTATGATACGATATATATTTATGTATTATGTAAGTTATGTGAGTTATG-TAAG-T-TACGTAA
65 AATTATGATACGATATATA--TAAG--TTAT-TAAGTTATGTGAGTTATGATAAGATATACGTAA
* *
32821443 GTTATTAAATGATATACGTTATA-TG
125 GTAATTAAATGATATAAGTTATAGTG
*
32821468 AGTTATGTAAGTTATGATATGATATATATAAGTTATTATGTTATGTATGTTATGTGAGTTATGTA
1 AGTTATGTAAGTTATGATATGATATATATAAGTTATTA-GTTATGTAAGTTATGTGAGTTATGTA
* * * * *
32821533 AGTTATGATATGGTATATATAAGTTATTAAGTTATGTGAGTTATGATATGATATATGTAAGTAAT
65 AATTATGATACGATATATATAAGTTATTAAGTTATGTGAGTTATGATAAGATATACGTAAGTAAT
* *
32821598 TAAGTTATATAAGTTATATGTG
130 TAAATGATATAAGTTATA-GTG
*
32821620 AGTTATGTAAGTTATGATATACATATATATAAGTTATTAAGTTA
1 AGTTATGTAAGTTATGATAT-GATATATATAAGTTATT-AGTTA
32821664 AAATCGAAAA
Statistics
Matches: 172, Mismatches: 12, Indels: 19
0.85 0.06 0.09
Matches are distributed among these distances:
147 18 0.10
148 36 0.21
149 1 0.01
150 30 0.17
151 4 0.02
152 62 0.36
153 20 0.12
154 1 0.01
ACGTcount: A:0.35, C:0.01, G:0.18, T:0.45
Consensus pattern (150 bp):
AGTTATGTAAGTTATGATATGATATATATAAGTTATTAGTTATGTAAGTTATGTGAGTTATGTAA
ATTATGATACGATATATATAAGTTATTAAGTTATGTGAGTTATGATAAGATATACGTAAGTAATT
AAATGATATAAGTTATAGTG
Found at i:32821569 original size:38 final size:38
Alignment explanation
Indices: 32821524--32821614 Score: 137
Period size: 38 Copynumber: 2.4 Consensus size: 38
32821514 ATGTTATGTG
* *
32821524 AGTTATGTAAGTTATGATATGGTATATATAAGTTATTA
1 AGTTATGTAAGTTATGATATGATATATATAAGTAATTA
* *
32821562 AGTTATGTGAGTTATGATATGATATATGTAAGTAATTA
1 AGTTATGTAAGTTATGATATGATATATATAAGTAATTA
*
32821600 AGTTATATAAGTTAT
1 AGTTATGTAAGTTAT
32821615 ATGTGAGTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (38 bp):
AGTTATGTAAGTTATGATATGATATATATAAGTAATTA
Found at i:32821576 original size:56 final size:56
Alignment explanation
Indices: 32821440--32821577 Score: 197
Period size: 56 Copynumber: 2.5 Consensus size: 56
32821430 GTAAGTTACG
* * * * *
32821440 TAAGTTATTAAATGATATACGTTATATGAGTTATGTAAGTTATGATATGATATATA
1 TAAGTTATTAAGTTATGTATGTTATGTGAGTTATGTAAGTTATGATATGATATATA
* *
32821496 TAAGTTATTATGTTATGTATGTTATGTGAGTTATGTAAGTTATGATATGGTATATA
1 TAAGTTATTAAGTTATGTATGTTATGTGAGTTATGTAAGTTATGATATGATATATA
32821552 TAAGTTATTAAGTTATGTGA-GTTATG
1 TAAGTTATTAAGTTATGT-ATGTTATG
32821578 ATATGATATA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
56 72 0.99
57 1 0.01
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.46
Consensus pattern (56 bp):
TAAGTTATTAAGTTATGTATGTTATGTGAGTTATGTAAGTTATGATATGATATATA
Found at i:32821723 original size:19 final size:19
Alignment explanation
Indices: 32821671--32821728 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
32821661 TTAAAATCGA
32821671 AAATTCTTTAAAGTTATGT
1 AAATTCTTTAAAGTTATGT
* *
32821690 AAATTATGT-AAGTTATGT
1 AAATTCTTTAAAGTTATGT
32821708 AAATTCTTTAAAGTTATGT
1 AAATTCTTTAAAGTTATGT
32821727 AA
1 AA
32821729 GTTTTGATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
18 16 0.47
19 18 0.53
ACGTcount: A:0.40, C:0.03, G:0.12, T:0.45
Consensus pattern (19 bp):
AAATTCTTTAAAGTTATGT
Found at i:32822044 original size:227 final size:231
Alignment explanation
Indices: 32821747--32822209 Score: 774
Period size: 227 Copynumber: 2.0 Consensus size: 231
32821737 TTTTATATTA
*
32821747 AAATAAATTTAAGTAATGATCAAAATTACTCTCCTACAAAAAATATTTATAAGTTTTAAAAACAT
1 AAATAAATTTAAATAATGATCAAAATTACTCTCCTACAAAAAATATTTATAAGTTTTAAAAACAT
32821812 TTAAAATTATTAAATATTAAAATCAAACATTGTTAATATCAAAAATTAATTAGTATTAAATATAT
66 TTAAAATTATTAAATATTAAAATCAAACATTGTTAATATCAAAAATTAATTAGTATTAAATATAT
*
32821877 ACTTGAAAATATTAT-AAAAAAAAGTA-CA-AA-TTCAAAATGTACAGTAATAAACTTGAAAAAT
131 ACTTGAAAATATTATAAAAAAAAAGAAGCACAAGTTCAAAATGTACAGTAATAAACTTGAAAAAT
* * **
32821938 GTGCAGTAATAAAATAGTTCCAATTACAAAGATCCC
196 GTACAGTAATAAAATAGTCCCAACGACAAAGATCCC
* *
32821974 AAATAAATTTAAATAATGATCAAAATTACTCTCTTACAAAATATATTTATAAGTTTTAAAAA-AT
1 AAATAAATTTAAATAATGATCAAAATTACTCTCCTACAAAAAATATTTATAAGTTTTAAAAACA-
* *
32822038 TTTAAAATTATTAAATATTAAAATCAAACATTGTTAATATCAAAACTTATTTAGTATTAAATATA
65 TTTAAAATTATTAAATATTAAAATCAAACATTGTTAATATCAAAAATTAATTAGTATTAAATATA
32822103 TACTTGAAAATATTATCAAAAAAAAAGAAGCACAAGTTCAAAATGTACAGTAATAAACTTGAAAA
130 TACTTGAAAATATTAT-AAAAAAAAAGAAGCACAAGTTCAAAATGTACAGTAATAAACTTGAAAA
*
32822168 ATGTACAGTAATAAAATAGTCCCAACGACAATGATCCC
194 ATGTACAGTAATAAAATAGTCCCAACGACAAAGATCCC
32822206 AAAT
1 AAAT
32822210 TGAAACGTCA
Statistics
Matches: 219, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
226 1 0.00
227 138 0.63
229 10 0.05
230 2 0.01
231 2 0.01
232 66 0.30
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.32
Consensus pattern (231 bp):
AAATAAATTTAAATAATGATCAAAATTACTCTCCTACAAAAAATATTTATAAGTTTTAAAAACAT
TTAAAATTATTAAATATTAAAATCAAACATTGTTAATATCAAAAATTAATTAGTATTAAATATAT
ACTTGAAAATATTATAAAAAAAAAGAAGCACAAGTTCAAAATGTACAGTAATAAACTTGAAAAAT
GTACAGTAATAAAATAGTCCCAACGACAAAGATCCC
Found at i:32822763 original size:24 final size:24
Alignment explanation
Indices: 32822720--32822771 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
32822710 AAACAAAACT
*
32822720 GAAATATTAGTTTTTTTTAGGGTAA
1 GAAATATTAGTTTTTATTA-GGTAA
32822745 GAAATATTAG-TTTTATTAGGTAA
1 GAAATATTAGTTTTTATTAGGTAA
32822768 -AAAT
1 GAAAT
32822772 GTTTAAACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 4 0.15
23 5 0.19
24 7 0.27
25 10 0.38
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.44
Consensus pattern (24 bp):
GAAATATTAGTTTTTATTAGGTAA
Found at i:32825179 original size:7 final size:7
Alignment explanation
Indices: 32825166--32825289 Score: 60
Period size: 7 Copynumber: 18.0 Consensus size: 7
32825156 TGTTTAAAAT
32825166 CCTAAAC
1 CCTAAAC
*
32825173 ACTAAAC
1 CCTAAAC
**
32825180 TATAAAC
1 CCTAAAC
*
32825187 CCTAAGCC
1 CCTAA-AC
32825195 CCTAAAC
1 CCTAAAC
32825202 CCTAAAC
1 CCTAAAC
*
32825209 TCTAAAC
1 CCTAAAC
** *
32825216 TTTTAAC
1 CCTAAAC
32825223 CCT-AAC
1 CCTAAAC
32825229 CCATAAAC
1 CC-TAAAC
*
32825237 CCTAAAT
1 CCTAAAC
*
32825244 ACTAAAC
1 CCTAAAC
**
32825251 TATAAA-
1 CCTAAAC
32825257 CCTACAA-
1 CCTA-AAC
32825264 CCTAAA-
1 CCTAAAC
32825270 CC-AAAC
1 CCTAAAC
*
32825276 ACTAAAC
1 CCTAAAC
*
32825283 TCTAAAC
1 CCTAAAC
32825290 ATTAAATTAT
Statistics
Matches: 90, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
5 3 0.03
6 12 0.13
7 64 0.71
8 11 0.12
ACGTcount: A:0.46, C:0.33, G:0.01, T:0.20
Consensus pattern (7 bp):
CCTAAAC
Found at i:32825585 original size:91 final size:92
Alignment explanation
Indices: 32825465--32825642 Score: 232
Period size: 91 Copynumber: 1.9 Consensus size: 92
32825455 AGATAAAATG
* * * **
32825465 TTTTTTGCGGCATTTTTTACAAAGCGCCGCTAAAGCTCGATCTATAGAGGCGTTTTTTAAAAAGC
1 TTTTTTGCGGCACTTTTAAAAAAGCGCCGCTAAAGCTCGATCTATAGAGGCGTTTTCCAAAAAGC
32825530 GCCACTAATGCCACTAAAGCTCTTAAA
66 GCCACTAATGCCACTAAAGCTCTTAAA
* * * * * *
32825557 TTTTTTGCGGCGCTTTTAAAAAAG-GCCGCTAAATCTTGATCTATAGCGGTGTTTTCCAAGAAGC
1 TTTTTTGCGGCACTTTTAAAAAAGCGCCGCTAAAGCTCGATCTATAGAGGCGTTTTCCAAAAAGC
**
32825621 GCTGCTAATGCCACTAAAGCTC
66 GCCACTAATGCCACTAAAGCTC
32825643 AACATAAAAT
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
91 53 0.73
92 20 0.27
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (92 bp):
TTTTTTGCGGCACTTTTAAAAAAGCGCCGCTAAAGCTCGATCTATAGAGGCGTTTTCCAAAAAGC
GCCACTAATGCCACTAAAGCTCTTAAA
Found at i:32825871 original size:12 final size:12
Alignment explanation
Indices: 32825854--32825878 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32825844 ACCAAAACTG
32825854 GCTTTTAGCGGC
1 GCTTTTAGCGGC
32825866 GCTTTTAGCGGC
1 GCTTTTAGCGGC
32825878 G
1 G
32825879 ATTAAACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.36, T:0.32
Consensus pattern (12 bp):
GCTTTTAGCGGC
Found at i:32826225 original size:113 final size:112
Alignment explanation
Indices: 32825990--32826589 Score: 835
Period size: 113 Copynumber: 5.3 Consensus size: 112
32825980 AAAATAAGCA
* * *
32825990 TTAGCGGCGTTTATTTGAAAGCGCCGCAAAAAGCCTAAGCCAAACGGTACCGTTTTCTGAGTTTT
1 TTAGCGGCGTTT-TTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
* * ** * *
32826055 GGGGGGTCTTTAGTGGCGTTTCTATAAAGCGCCGCTAATTCTCAGGTCT
65 -TGGGGTCTTTAGCGGCGTTTCTGCAATGCGCCGCTAATGCTCAGGTCT
* * *
32826104 GTAGCGGCGGTTTTTTAACAA-CGCCGCAAAAAGCCTAAACCCAACGGTACCGTTTTCTGAGTTT
1 TTAGCGGC-GTTTTTTAA-AAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTT
*
32826168 TTGGGGTCTTTAGCGGCGTTTCTGCACTGCGCCGCTAATGCTCAGGTCT
64 TTGGGGTCTTTAGCGGCGTTTCTGCAATGCGCCGCTAATGCTCAGGTCT
* * *
32826217 TTAGCGGCGTTTTTTAAAAGCGCCGCAACAAGCCTAAACCCAACGGCACCATTTTCTGAGTTTTT
1 TTAGCGGCGTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTTT
* * * * * *
32826282 GGGGGTCTTTCGCGGCATTTTTGTAATGCGCCGCTAATTCTTAGGTCTT
66 -GGGGTCTTTAGCGGCGTTTCTGCAATGCGCCGCTAATGCTCAGGTC-T
*
32826331 TTAGCGGCGTTTTGTTAAAAGCGCCGCAAAAAGCCTAAGCCAAACGGCACCGTTTTCTGAGTTTT
1 TTAGCGGCGTTTT-TTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
* * * *
32826396 TGGGGTCTTTAGCGGCGTTTTTTCAAAGCGCCGCTAATGCTCAGGTGT
65 TGGGGTCTTTAGCGGCGTTTCTGCAATGCGCCGCTAATGCTCAGGTCT
*
32826444 TTAGCAGCGTTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
1 TTAGCGGCG-TTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
32826509 TGGGGTCTTTAGCGGCGTTTCTG-AATAAGCGCCGCTAATGCTCAGGTCT
65 TGGGGTCTTTAGCGGCGTTTCTGCAAT--GCGCCGCTAATGCTCAGGTCT
32826558 TTAGCGGCGTTTTTTAAAAAGCGCCGCAAAAA
1 TTAGCGGCGTTTTTT-AAAAGCGCCGCAAAAA
32826590 CATTTTATCT
Statistics
Matches: 435, Mismatches: 41, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
111 2 0.00
112 53 0.12
113 173 0.40
114 153 0.35
115 54 0.12
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (112 bp):
TTAGCGGCGTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTTT
GGGGTCTTTAGCGGCGTTTCTGCAATGCGCCGCTAATGCTCAGGTCT
Found at i:32826398 original size:227 final size:225
Alignment explanation
Indices: 32825990--32826589 Score: 873
Period size: 227 Copynumber: 2.6 Consensus size: 225
32825980 AAAATAAGCA
* * *
32825990 TTAGCGGCGTTTATTTGAAAGCGCCGCAAAAAGCCTAAGCCAAACGGTACCGTTTTCTGAGTTTT
1 TTAGCGGCGTTT-TTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
* * * * *
32826055 GGGGGGTCTTTAGTGGCGTTTCTATAAAGCGCCGCTAATTCTCAGGTCTGTAGCGGCGGTTTTTT
65 TGGGGGTCTTTAGCGGCGTTTCTGTAATGCGCCGCTAATTCTCAGGTCTTTAGCGGC-GTTTTTT
* *
32826120 AACAA-CGCCGCAAAAAGCCTAAACCCAACGGTACCGTTTTCTGAGTTTTTGGGGTCTTTAGCGG
129 AA-AAGCGCCGCAAAAAGCCTAAACCAAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTAGCGG
**
32826184 CGTTTCTGCACTGCGCCGCTAATGCTCAGGTCT
193 CGTTTCTGCAAAGCGCCGCTAATGCTCAGGTCT
* * *
32826217 TTAGCGGCGTTTTTTAAAAGCGCCGCAACAAGCCTAAACCCAACGGCACCATTTTCTGAGTTTTT
1 TTAGCGGCGTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTTT
* * * *
32826282 GGGGGTCTTTCGCGGCATTTTTGTAATGCGCCGCTAATTCTTAGGTCTTTTAGCGGCGTTTTGTT
66 GGGGGTCTTTAGCGGCGTTTCTGTAATGCGCCGCTAATTCTCAGGTC-TTTAGCGGCGTTTT-TT
*
32826347 AAAAGCGCCGCAAAAAGCCTAAGCCAAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTAGCGGC
129 AAAAGCGCCGCAAAAAGCCTAAACCAAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTAGCGGC
* * *
32826412 GTTTTTTCAAAGCGCCGCTAATGCTCAGGTGT
194 GTTTCTGCAAAGCGCCGCTAATGCTCAGGTCT
*
32826444 TTAGCAGCGTTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
1 TTAGCGGCG-TTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTT
*
32826509 T-GGGGTCTTTAGCGGCGTTTCTG-AATAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTT
65 TGGGGGTCTTTAGCGGCGTTTCTGTAAT--GCGCCGCTAATTCTCAGGTCTTTAGCGGCGTTTTT
32826572 TAAAAAGCGCCGCAAAAA
128 T-AAAAGCGCCGCAAAAA
32826590 CATTTTATCT
Statistics
Matches: 334, Mismatches: 32, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
226 98 0.29
227 165 0.49
228 71 0.21
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (225 bp):
TTAGCGGCGTTTTTTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGTTTTT
GGGGGTCTTTAGCGGCGTTTCTGTAATGCGCCGCTAATTCTCAGGTCTTTAGCGGCGTTTTTTAA
AAGCGCCGCAAAAAGCCTAAACCAAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTAGCGGCGT
TTCTGCAAAGCGCCGCTAATGCTCAGGTCT
Found at i:32827133 original size:15 final size:16
Alignment explanation
Indices: 32827105--32827141 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
32827095 TTAGACTAAG
32827105 TAATATATATATTAAA
1 TAATATATATATTAAA
*
32827121 TTATATA-ATATTAAA
1 TAATATATATATTAAA
32827136 TAATAT
1 TAATAT
32827142 TGTTTAGGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TAATATATATATTAAA
Found at i:32827155 original size:7 final size:7
Alignment explanation
Indices: 32827143--32827183 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
32827133 AAATAATATT
32827143 GTTTAGG
1 GTTTAGG
*
32827150 GGTTAGG
1 GTTTAGG
32827157 GATTTAGG
1 G-TTTAGG
32827165 G-TTAGG
1 GTTTAGG
32827171 GTTTAGG
1 GTTTAGG
32827178 GTTTAG
1 GTTTAG
32827184 ATTAATTAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 6 0.20
7 18 0.60
8 6 0.20
ACGTcount: A:0.17, C:0.00, G:0.44, T:0.39
Consensus pattern (7 bp):
GTTTAGG
Found at i:32827273 original size:89 final size:89
Alignment explanation
Indices: 32827165--32827420 Score: 359
Period size: 94 Copynumber: 2.8 Consensus size: 89
32827155 GGGATTTAGG
* *
32827165 GTTAGGGTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTGATATATTAAATAATGTTTAGGGGT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
*
32827230 TAGGGGTTAGTGATTCGGGGTCGA
66 TAGGGGTTAGTGATTCGGGGTCCA
*
32827254 GTTAGGGTTTAGGATTTAGATTAATTAGTTTTTTTTAATTTATATATATTAATAAATAATGTTTA
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAA-TT-TATATA-T--TAAATAATGTTTA
*
32827319 GGGGTTTGGGGTTAGTGATTCGGGGTCCA
61 GGGGTTAGGGGTTAGTGATTCGGGGTCCA
* * * * * * *
32827348 ATTAAGGTTTAGGATTTAGATTGATTAGTGTTTTATAATTTACATATTAAATAATGTTTAAGGTT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
32827413 TAGGGGTT
66 TAGGGGTT
32827421 TGGGGTTTGT
Statistics
Matches: 148, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
89 59 0.40
90 2 0.01
91 6 0.04
92 6 0.04
93 2 0.01
94 73 0.49
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.45
Consensus pattern (89 bp):
GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
TAGGGGTTAGTGATTCGGGGTCCA
Found at i:32827810 original size:8 final size:9
Alignment explanation
Indices: 32827787--32827830 Score: 52
Period size: 9 Copynumber: 4.6 Consensus size: 9
32827777 AATTTGGACC
*
32827787 AAAATATAA
1 AAAAAATAA
32827796 GAAAAAATAA
1 -AAAAAATAA
32827806 AAAAAATAA
1 AAAAAATAA
32827815 AAAGGAAATAA
1 AAA--AAATAA
32827826 AAAAA
1 AAAAA
32827831 CTAATAATGT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
9 14 0.45
10 8 0.26
11 9 0.29
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.11
Consensus pattern (9 bp):
AAAAAATAA
Found at i:32827814 original size:19 final size:19
Alignment explanation
Indices: 32827787--32827830 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
32827777 AATTTGGACC
*
32827787 AAAATATAAGAAA-AAATAA
1 AAAAAATAA-AAAGAAATAA
32827806 AAAAAATAAAAAGGAAATAA
1 AAAAAATAAAAA-GAAATAA
32827826 AAAAA
1 AAAAA
32827831 CTAATAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 8 0.36
20 11 0.50
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.11
Consensus pattern (19 bp):
AAAAAATAAAAAGAAATAA
Found at i:32834690 original size:66 final size:66
Alignment explanation
Indices: 32834584--32834753 Score: 216
Period size: 66 Copynumber: 2.6 Consensus size: 66
32834574 AGCAAATTAC
* * *
32834584 ACAACTTAAAGCAGATGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAG
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCAA
**
32834648 TT
65 CA
*
32834650 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCAAC
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAAC
32834715 A
66 A
* * * * * *
32834716 ACAGCTTAGAGCAGATGCGGCGGCAAGAGAAGCAGAGG
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGG
32834754 CGGCAGCGAG
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
66 87 0.96
67 4 0.04
ACGTcount: A:0.41, C:0.18, G:0.26, T:0.14
Consensus pattern (66 bp):
ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAAC
A
Found at i:32834749 original size:21 final size:21
Alignment explanation
Indices: 32834725--32834796 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
32834715 AACAGCTTAG
* *
32834725 AGCAGATGCGGCGGCAAGAGA
1 AGCAGAGGCGGCAGCAAGAGA
*
32834746 AGCAGAGGCGGCAGCGAGAGA
1 AGCAGAGGCGGCAGCAAGAGA
* * * * *
32834767 AGTACAGGCTGCAGCGAGGGA
1 AGCAGAGGCGGCAGCAAGAGA
32834788 AGCAGAGGC
1 AGCAGAGGC
32834797 TAAAGTGAGG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.32, C:0.19, G:0.44, T:0.04
Consensus pattern (21 bp):
AGCAGAGGCGGCAGCAAGAGA
Found at i:32834797 original size:21 final size:21
Alignment explanation
Indices: 32834744--32834836 Score: 105
Period size: 21 Copynumber: 4.4 Consensus size: 21
32834734 GGCGGCAAGA
* *
32834744 GAAGCAGAGGCGGCAGCGAGA
1 GAAGCAGAGGCTGCAGCGAGG
* *
32834765 GAAGTACAGGCTGCAGCGAGG
1 GAAGCAGAGGCTGCAGCGAGG
** *
32834786 GAAGCAGAGGCTAAAGTGAGG
1 GAAGCAGAGGCTGCAGCGAGG
**
32834807 GAAATAGAGGCTGCAGCGAGG
1 GAAGCAGAGGCTGCAGCGAGG
32834828 GAAGCAGAG
1 GAAGCAGAG
32834837 CAGCGTCAAA
Statistics
Matches: 56, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.34, C:0.15, G:0.44, T:0.06
Consensus pattern (21 bp):
GAAGCAGAGGCTGCAGCGAGG
Found at i:32835243 original size:43 final size:42
Alignment explanation
Indices: 32835188--32835544 Score: 254
Period size: 43 Copynumber: 8.3 Consensus size: 42
32835178 GGTGCTTGGC
* * *
32835188 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATTAGGGT
1 CTTTAGCGGCGTTTGT-GTCAAAGCGCCGCTAAAGATCAGGGT
* ** * * *
32835231 CTTTTGCGGCGTTTGTGGAAAAGGCGCCACTAAAGCTCATGGT
1 CTTTAGCGGCGTTTGTGTCAAA-GCGCCGCTAAAGATCAGGGT
* * * *
32835274 CTTTAGCGGCGTTTGTAGTGAAAGTGCCACTAAAGATTC-GGTT
1 CTTTAGCGGCGTTTGT-GTCAAAGCGCCGCTAAAGA-TCAGGGT
* * * *
32835317 CTTTAGTGGCGTTTGTTGTCTATGCGCCGCTATAGATCAGGGT
1 CTTTAGCGGCGTTTG-TGTCAAAGCGCCGCTAAAGATCAGGGT
* * * * ** *
32835360 CTATAGCGACGCTTATACCAAAAACGCCGCTAAAGATCAGGGT
1 CTTTAGCGGCGTTTGTGTC-AAAGCGCCGCTAAAGATCAGGGT
* * ** *
32835403 CTTTAGCGGCGCTTATCCCAAAAACGCCGCTAAAGATCAGGGT
1 CTTTAGCGGCGTTTGTGTC-AAAGCGCCGCTAAAGATCAGGGT
* * * ****
32835446 CTTTAGCGGCGCTTCT-ACTAAAGCGCCGCTAAA-AGTCTTATT
1 CTTTAGCGGCGTTTGTGTC-AAAGCGCCGCTAAAGA-TCAGGGT
*
32835488 CTTCAGCGGCGTTTGTGAT-AGAAGCGCCGCTAAAGATCAGGGT
1 CTTTAGCGGCGTTTGTG-TCA-AAGCGCCGCTAAAGATCAGGGT
32835531 CTTTAGCGGCGTTT
1 CTTTAGCGGCGTTT
32835545 TTAGTAAAAA
Statistics
Matches: 248, Mismatches: 55, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
41 1 0.00
42 39 0.16
43 200 0.81
44 8 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (42 bp):
CTTTAGCGGCGTTTGTGTCAAAGCGCCGCTAAAGATCAGGGT
Found at i:32835747 original size:40 final size:40
Alignment explanation
Indices: 32835680--32835757 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
32835670 GTGGTTATTC
* *
32835680 AAAAAGCGCCGCTAATGGTACACCTATAGCGACGTTTTTT
1 AAAAAGCGCCGCTAATGCTACACCTATAACGACGTTTTTT
* *
32835720 AAAAAGCGCCGCTAATGCT-CGATCTATAACGGCGTTTT
1 AAAAAGCGCCGCTAATGCTAC-ACCTATAACGACGTTTT
32835758 CTGTCCAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.03
40 32 0.97
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (40 bp):
AAAAAGCGCCGCTAATGCTACACCTATAACGACGTTTTTT
Found at i:32843883 original size:22 final size:22
Alignment explanation
Indices: 32843858--32843934 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
32843848 CCAAAATATT
32843858 ATCTCCTAAACTTTAGCATCTA
1 ATCTCCTAAACTTTAGCATCTA
* * * *
32843880 ATCTCCT-AA-TTAAACCAAAATATT
1 ATCTCCTAAACTT-TAGC---ATCTA
32843904 ATCTCCTAAACTTTAGCATCTA
1 ATCTCCTAAACTTTAGCATCTA
32843926 ATCTCCTAA
1 ATCTCCTAA
32843935 TTAAAAGAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 2 0.05
21 4 0.10
22 19 0.46
24 10 0.24
25 4 0.10
26 2 0.05
ACGTcount: A:0.36, C:0.26, G:0.03, T:0.35
Consensus pattern (22 bp):
ATCTCCTAAACTTTAGCATCTA
Found at i:32843897 original size:46 final size:46
Alignment explanation
Indices: 32843845--32843939 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
32843835 ACAAAGATAG
32843845 AAACCAAAATATTATCTCCTAAACTTTAGCATCTAATCTCCTAATT
1 AAACCAAAATATTATCTCCTAAACTTTAGCATCTAATCTCCTAATT
32843891 AAACCAAAATATTATCTCCTAAACTTTAGCATCTAATCTCCTAATT
1 AAACCAAAATATTATCTCCTAAACTTTAGCATCTAATCTCCTAATT
32843937 AAA
1 AAA
32843940 AGAAAATAGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.41, C:0.23, G:0.02, T:0.34
Consensus pattern (46 bp):
AAACCAAAATATTATCTCCTAAACTTTAGCATCTAATCTCCTAATT
Found at i:32848476 original size:46 final size:46
Alignment explanation
Indices: 32848426--32848520 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
32848416 ACAAAGATAG
*
32848426 AAACCAAAATATTATCTCTTAAACTTTAGCATCTAATCTCCTAATT
1 AAACCAAAATATTATCTCCTAAACTTTAGCATCTAATCTCCTAATT
32848472 AAACCAAAATATTATCTCCTAAACTTTAGCATCTAATCTCCTAATT
1 AAACCAAAATATTATCTCCTAAACTTTAGCATCTAATCTCCTAATT
32848518 AAA
1 AAA
32848521 AGAAAATAGA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.41, C:0.22, G:0.02, T:0.35
Consensus pattern (46 bp):
AAACCAAAATATTATCTCCTAAACTTTAGCATCTAATCTCCTAATT
Found at i:32854362 original size:117 final size:117
Alignment explanation
Indices: 32854154--32854364 Score: 332
Period size: 117 Copynumber: 1.8 Consensus size: 117
32854144 TTTGATTTGT
* * *
32854154 TGGTTATTTTTTATTTATTATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCGATTTGT
1 TGGTTATTTATGATTTATTATTGCAATTTCAATGCCACAATGTAGGGTTTGTTTTGTCGATTTGT
* *
32854219 AATGCGATAGTGGTCCCGATGTTGTTGATAAAACTGTTGTTAAAATTGTAGA
66 AATGCGACAGTGGTCCCGATGATGTTGATAAAACTGTTGTTAAAATTGTAGA
* * *
32854271 TGGTTATTTATGATTTATTATTGTAATTTTAATGCCACGATGTAGGGTTTGTTTTGTCGATTTGT
1 TGGTTATTTATGATTTATTATTGCAATTTCAATGCCACAATGTAGGGTTTGTTTTGTCGATTTGT
* *
32854336 GATGCGACAGTGGTTCCGATGATGTTGAT
66 AATGCGACAGTGGTCCCGATGATGTTGAT
32854365 TTTTGTTACC
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
117 84 1.00
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.45
Consensus pattern (117 bp):
TGGTTATTTATGATTTATTATTGCAATTTCAATGCCACAATGTAGGGTTTGTTTTGTCGATTTGT
AATGCGACAGTGGTCCCGATGATGTTGATAAAACTGTTGTTAAAATTGTAGA
Found at i:32855017 original size:33 final size:33
Alignment explanation
Indices: 32854950--32855028 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
32854940 TTTTGACTAT
* *
32854950 TGGGGAAGGTGATGTTCAAGGGGTGGAAGTTGA
1 TGGGGAAGGTGATGATCAAGGGGTAGAAGTTGA
* *
32854983 TGGGGAGGGTGATGATGAAGGGGTAGAA-TATGA
1 TGGGGAAGGTGATGATCAAGGGGTAGAAGT-TGA
**
32855016 TGGTAAAGGTGAT
1 TGGGGAAGGTGAT
32855029 CTCGGATAGG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
32 1 0.03
33 37 0.97
ACGTcount: A:0.28, C:0.01, G:0.47, T:0.24
Consensus pattern (33 bp):
TGGGGAAGGTGATGATCAAGGGGTAGAAGTTGA
Found at i:32855060 original size:33 final size:33
Alignment explanation
Indices: 32855023--32855092 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
32855013 TGATGGTAAA
* * * * *
32855023 GGTGATCTCGGATAGGTAGAATCTGGTGGGGAG
1 GGTGATCTAGGAGAGGTACAAGCTGATGGGGAG
*
32855056 GGTGATGTAGGAGAGGTACAAGCTGATGGGGAG
1 GGTGATCTAGGAGAGGTACAAGCTGATGGGGAG
32855089 GGTG
1 GGTG
32855093 TGTCTGCTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.23, C:0.07, G:0.49, T:0.21
Consensus pattern (33 bp):
GGTGATCTAGGAGAGGTACAAGCTGATGGGGAG
Found at i:32855256 original size:51 final size:51
Alignment explanation
Indices: 32855196--32855350 Score: 256
Period size: 51 Copynumber: 3.0 Consensus size: 51
32855186 GTGAAGTTGC
*
32855196 TGCTGATGAATATGCTGGTGATTTTGCAACATCAGATAGAGTGGATAATGT
1 TGCTGATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGT
* *
32855247 TGCTGATGAATATGTTGGTGATTTTGCAACATCAGATGGAGTGTATAATGT
1 TGCTGATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGT
* * *
32855298 TGCTGATGAATATGCTGGTGATTTTGCAACATTAAATGGACTGGATAATGT
1 TGCTGATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGT
32855349 TG
1 TG
32855351 TCTTATAATT
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 96 1.00
ACGTcount: A:0.28, C:0.09, G:0.27, T:0.35
Consensus pattern (51 bp):
TGCTGATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGT
Found at i:32859813 original size:98 final size:97
Alignment explanation
Indices: 32859644--32859829 Score: 248
Period size: 98 Copynumber: 1.9 Consensus size: 97
32859634 TAAAATAAAT
* * * * *
32859644 CTTGTGACCTTCATAGTGTGCTATACCTTAATTCTGAGTGGATGATAGACTATGTATGTGTGGCT
1 CTTGTGACCTTCATAGTGTGCTATACCTTAATCCTAAGTGGATAATAGACTATGTATGCGTGACT
32859709 CGTATACTGTGATGCAAATGAAAATTTTATTCA
66 CGTATACTGTGATGCAAAT-AAAATTTTATTCA
* * * *
32859742 CTTGTGACGTTCATTGTGTG-TCATATCTTAATCCTAAGTGGATAATGGACTATGTATGCGTGAC
1 CTTGTGACCTTCATAGTGTGCT-ATACCTTAATCCTAAGTGGATAATAGACTATGTATGCGTGAC
* *
32859806 TCGTATACTTTGATTCAAATAAAA
65 TCGTATACTGTGATGCAAATAAAA
32859830 GCCTGATTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
97 5 0.07
98 71 0.93
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (97 bp):
CTTGTGACCTTCATAGTGTGCTATACCTTAATCCTAAGTGGATAATAGACTATGTATGCGTGACT
CGTATACTGTGATGCAAATAAAATTTTATTCA
Found at i:32861606 original size:34 final size:34
Alignment explanation
Indices: 32861563--32861630 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
32861553 AATATATTAA
32861563 ATATTCAATATCTTGTAAAGATTCGCTAATCTAT
1 ATATTCAATATCTTGTAAAGATTCGCTAATCTAT
*
32861597 ATATTCAATATCTTGTAAAGATTTGCTAATCTAT
1 ATATTCAATATCTTGTAAAGATTCGCTAATCTAT
32861631 CCCATATACT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (34 bp):
ATATTCAATATCTTGTAAAGATTCGCTAATCTAT
Found at i:32862286 original size:2 final size:2
Alignment explanation
Indices: 32862279--32862309 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
32862269 TCAACCATGA
32862279 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32862310 GAATAATACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32863359 original size:23 final size:23
Alignment explanation
Indices: 32863333--32863454 Score: 138
Period size: 23 Copynumber: 5.3 Consensus size: 23
32863323 ATAAGTGCCA
*
32863333 CACTGATATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * * *
32863356 CACTAATACGTAACCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
32863379 CACTGAAATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
32863402 CACTGATATGTAGCCGTAA-CTAC
1 CACTGATATGTAGCCG-AAGCTAC
* * *
32863425 CACTAAAATATAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
32863448 CACTGAT
1 CACTGAT
32863455 CAATAACACT
Statistics
Matches: 79, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
22 2 0.03
23 75 0.95
24 2 0.03
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:32863400 original size:46 final size:46
Alignment explanation
Indices: 32863333--32863451 Score: 157
Period size: 46 Copynumber: 2.6 Consensus size: 46
32863323 ATAAGTGCCA
* * *
32863333 CACTGATATGTAGCCAAAGCTACCACTAATACGTAACCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTAATACGTAACCGTAACTAC
* * * *
32863379 CACTGAAATGTAGCTGAAGCTACCACTGATATGTAGCCGTAACTAC
1 CACTGAAATGTAGCCGAAGCTACCACTAATACGTAACCGTAACTAC
* *
32863425 CACTAAAATATAGCCGAAGCTACCACT
1 CACTGAAATGTAGCCGAAGCTACCACT
32863452 GATCAATAAC
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 63 1.00
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTAATACGTAACCGTAACTAC
Found at i:32866269 original size:20 final size:21
Alignment explanation
Indices: 32866228--32866269 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
32866218 TTTTGGCATG
*
32866228 ATTTTTTATAATTAAAATTTA
1 ATTTTTTATAATTAAAAGTTA
*
32866249 ATTTTTT-TAATTCAAAGTTA
1 ATTTTTTATAATTAAAAGTTA
32866269 A
1 A
32866270 ACAAGTCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
ATTTTTTATAATTAAAAGTTA
Found at i:32873962 original size:17 final size:17
Alignment explanation
Indices: 32873940--32873974 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32873930 AGAATAGGGC
*
32873940 TGAGAAAATTATTTATT
1 TGAGAAAATAATTTATT
*
32873957 TGAGAAACTAATTTATT
1 TGAGAAAATAATTTATT
32873974 T
1 T
32873975 ATTTAAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.46
Consensus pattern (17 bp):
TGAGAAAATAATTTATT
Found at i:32877420 original size:2 final size:2
Alignment explanation
Indices: 32877415--32877441 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32877405 AAACAACTTT
32877415 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
32877442 TACTTTTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32878032 original size:9 final size:9
Alignment explanation
Indices: 32878013--32878079 Score: 71
Period size: 9 Copynumber: 7.4 Consensus size: 9
32878003 TGTATGATTC
*
32878013 AATTAGGTT
1 AATTCGGTT
*
32878022 AATCCGGTT
1 AATTCGGTT
*
32878031 AATTCGGGT
1 AATTCGGTT
*
32878040 AATTCGGGT
1 AATTCGGTT
32878049 AATTCGGTT
1 AATTCGGTT
* * *
32878058 AATTTGCTG
1 AATTCGGTT
32878067 AATTCGGTT
1 AATTCGGTT
32878076 AATT
1 AATT
32878080 TTTAACCAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 47 1.00
ACGTcount: A:0.25, C:0.10, G:0.24, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:32878379 original size:13 final size:13
Alignment explanation
Indices: 32878361--32878393 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
32878351 TTGCTAAGAG
32878361 ATAATATCCCATA
1 ATAATATCCCATA
*
32878374 ATAATATCCTATA
1 ATAATATCCCATA
32878387 ATAATAT
1 ATAATAT
32878394 TCTAACACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAATATCCCATA
Found at i:32882472 original size:13 final size:13
Alignment explanation
Indices: 32882454--32882489 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
32882444 TTTTTAATAT
32882454 TTTAAAA-ATAGAA
1 TTTAAAACA-AGAA
32882467 TTTAAAACAAGAA
1 TTTAAAACAAGAA
32882480 TTTAAAACAA
1 TTTAAAACAA
32882490 TCTCTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 21 0.95
14 1 0.05
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.28
Consensus pattern (13 bp):
TTTAAAACAAGAA
Found at i:32895559 original size:18 final size:19
Alignment explanation
Indices: 32895536--32895573 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32895526 AATCCGTCAC
32895536 TTAAAAA-TG-AAATTACTT
1 TTAAAAACTGTAAA-TACTT
32895554 TTAAAAACTGTAAATACTT
1 TTAAAAACTGTAAATACTT
32895573 T
1 T
32895574 CTGTTGGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 8 0.44
20 3 0.17
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.39
Consensus pattern (19 bp):
TTAAAAACTGTAAATACTT
Found at i:32915529 original size:30 final size:29
Alignment explanation
Indices: 32915495--32915574 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
32915485 GAATTGAATC
*
32915495 AAATCAAAATTTCATGTATAAAATTGCTCA
1 AAATC-AAAGTTCATGTATAAAATTGCTCA
* *
32915525 AAATCAAAGTTCATGTATACAATTGCACA
1 AAATCAAAGTTCATGTATAAAATTGCTCA
*
32915554 TTAAACCAAAGTTCATGTATA
1 --AAATCAAAGTTCATGTATA
32915575 GTTTTGGGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 21 0.48
30 5 0.11
31 18 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (29 bp):
AAATCAAAGTTCATGTATAAAATTGCTCA
Found at i:32919027 original size:37 final size:37
Alignment explanation
Indices: 32918980--32919050 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
32918970 TTGGGAAAAT
32918980 AATTCCCTTATTCTAATAAACTACTAAAAGATAAGGA
1 AATTCCCTTATTCTAATAAACTACTAAAAGATAAGGA
* *
32919017 AATTCCCTTATTCTAATATACTACTAAAGGATAA
1 AATTCCCTTATTCTAATAAACTACTAAAAGATAA
32919051 AATAAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (37 bp):
AATTCCCTTATTCTAATAAACTACTAAAAGATAAGGA
Found at i:32919112 original size:19 final size:19
Alignment explanation
Indices: 32919088--32919128 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
32919078 TGATTTATTC
32919088 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
*
32919107 TAAGATTTATCTATCTAAA
1 TAAGATTTATCTACCTAAA
32919126 TAA
1 TAA
32919129 CCTTAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Found at i:32921593 original size:41 final size:41
Alignment explanation
Indices: 32921499--32921580 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
32921489 AATCTAATTG
* * *
32921499 GGAAAATAATTCTCTTATTTTAGTAAACTACTAAAAGATAA
1 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
32921540 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
1 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
32921581 AATGAAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.32
Consensus pattern (41 bp):
GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
Found at i:32924749 original size:23 final size:22
Alignment explanation
Indices: 32924706--32924749 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
32924696 TTCTAAGTCG
32924706 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
32924729 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
32924750 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:32924858 original size:45 final size:45
Alignment explanation
Indices: 32924794--32924887 Score: 134
Period size: 45 Copynumber: 2.1 Consensus size: 45
32924784 AACAGATACT
* * * *
32924794 CGGTGGATTCAGCACATAGCAACCACCTTATTAATTAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACATTACTAATCAATGATGTC
* *
32924839 CGGTGGAATCAGCACATAGCAACCACATTGCTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACATTACTAATCAATGATGTC
32924884 CGGT
1 CGGT
32924888 TCATATAGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACATTACTAATCAATGATGTC
Found at i:32927864 original size:18 final size:17
Alignment explanation
Indices: 32927833--32927866 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32927823 ACAAACACAG
*
32927833 TTAAAAATTTGAGGAGT
1 TTAAAAATTAGAGGAGT
32927850 TTAAAAATGTAGAGGAG
1 TTAAAAAT-TAGAGGAG
32927867 AATTTGGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.29
Consensus pattern (17 bp):
TTAAAAATTAGAGGAGT
Found at i:32939357 original size:57 final size:54
Alignment explanation
Indices: 32939252--32939357 Score: 140
Period size: 57 Copynumber: 1.9 Consensus size: 54
32939242 TTAATATTAA
* * * *
32939252 ATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAACATTAAATCTT
1 ATTAATAGAATATTTATCAAGATAAACATTAAATTAAACTTAACATTAAATCTT
*
32939306 ATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAACTTAATATTAA
1 ATTAATAGAATATTTA--T-CAAGATAAACATTAAATTAAACTTAACATTAA
32939358 GATAATCACT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
54 15 0.34
56 1 0.02
57 28 0.64
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.40
Consensus pattern (54 bp):
ATTAATAGAATATTTATCAAGATAAACATTAAATTAAACTTAACATTAAATCTT
Found at i:32939383 original size:20 final size:18
Alignment explanation
Indices: 32939336--32939384 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
32939326 CAAGATAAAC
32939336 ATTAAATTAA-ACTTAAT
1 ATTAAATTAATACTTAAT
32939353 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-AC-TTAAT
32939373 ATTAAATTAATA
1 ATTAAATTAATA
32939385 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 4 0.15
20 14 0.52
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATACTTAAT
Found at i:32948755 original size:22 final size:22
Alignment explanation
Indices: 32948730--32948775 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
32948720 TGGATGAGAT
32948730 TGTTTGGATTCCCTTTTGGATA
1 TGTTTGGATTCCCTTTTGGATA
32948752 TGTTTGGATTCCCTTTTGGATA
1 TGTTTGGATTCCCTTTTGGATA
32948774 TG
1 TG
32948776 ATAGTTAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.13, C:0.13, G:0.24, T:0.50
Consensus pattern (22 bp):
TGTTTGGATTCCCTTTTGGATA
Found at i:32953450 original size:100 final size:100
Alignment explanation
Indices: 32953267--32953458 Score: 262
Period size: 100 Copynumber: 1.9 Consensus size: 100
32953257 CCTGATCAAC
* * *
32953267 ATTTTGTATTAAATGAAAAAAAGTTTTTAATGTAATTATTTCAACGATTGAACTTTCAATTCCAT
1 ATTTTGTATTAAATGAAAAAAAGTTTTTAACGTAATTAATTCAACGATTGAACTTCCAATTCCAT
** * *
32953332 TGATTATGTTTTTCTTTTTGAAGTATGGCGGCTAAA
66 CAATCATGTTTTTCTTTTT-AAATATGGCGGCTAAA
* * *
32953368 ATTTTGTATTAAATGAAGAAAA-TTTTTAACGTCATTAATTCAGCGATTGAACTTCCAATTCCAT
1 ATTTTGTATTAAATGAAAAAAAGTTTTTAACGTAATTAATTCAACGATTGAACTTCCAATTCCAT
32953432 CAATCATGTTTTAT-TTTTTAAATATGG
66 CAATCATGTTTT-TCTTTTTAAATATGG
32953459 GTACTCCAAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
99 7 0.09
100 51 0.64
101 22 0.28
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.44
Consensus pattern (100 bp):
ATTTTGTATTAAATGAAAAAAAGTTTTTAACGTAATTAATTCAACGATTGAACTTCCAATTCCAT
CAATCATGTTTTTCTTTTTAAATATGGCGGCTAAA
Found at i:32953619 original size:18 final size:18
Alignment explanation
Indices: 32953596--32953641 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
32953586 GACATTCCTT
32953596 CTCAAAAGTATTTTTGAA
1 CTCAAAAGTATTTTTGAA
32953614 CTCAAAAGTATTTTTGAA
1 CTCAAAAGTATTTTTGAA
32953632 CTCAAAAGTA
1 CTCAAAAGTA
32953642 AAAATAGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (18 bp):
CTCAAAAGTATTTTTGAA
Found at i:32955642 original size:12 final size:12
Alignment explanation
Indices: 32955620--32955711 Score: 66
Period size: 12 Copynumber: 7.8 Consensus size: 12
32955610 TTAAAAATAA
32955620 AAATATATATAT
1 AAATATATATAT
* *
32955632 ACATATTTATAT
1 AAATATATATAT
32955644 AAATATA-A-A-
1 AAATATATATAT
*
32955653 AAATATTCATTAAAT
1 AAATA-T-A-TATAT
32955668 AAATATATATAT
1 AAATATATATAT
* * *
32955680 ACATGTACATA-
1 AAATATATATAT
32955691 AAATATATATAT
1 AAATATATATAT
*
32955703 ATATATATA
1 AAATATATA
32955712 GATTAAAAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
9 5 0.08
10 2 0.03
11 10 0.16
12 35 0.57
13 2 0.03
14 2 0.03
15 5 0.08
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.39
Consensus pattern (12 bp):
AAATATATATAT
Found at i:32955679 original size:21 final size:23
Alignment explanation
Indices: 32955655--32955703 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
32955645 AATATAAAAA
*
32955655 ATATTCAT-TAAAT-AAATATAT
1 ATATACATGTAAATAAAATATAT
*
32955676 ATATACATGTACATAAAATATAT
1 ATATACATGTAAATAAAATATAT
32955699 ATATA
1 ATATA
32955704 TATATATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 7 0.29
22 4 0.17
23 13 0.54
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (23 bp):
ATATACATGTAAATAAAATATAT
Found at i:32955720 original size:27 final size:27
Alignment explanation
Indices: 32955655--32955723 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 27
32955645 AATATAAAAA
*
32955655 ATATTCATTAAATAA-ATATATATATAC
1 ATATACATTAAA-AATATATATATATAC
* *
32955682 ATGTACA-T-AAAATATATATATATAT
1 ATATACATTAAAAATATATATATATAC
*
32955707 ATATAGATTAAAAATAT
1 ATATACATTAAAAATAT
32955724 TAAATAATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
24 2 0.06
25 18 0.53
26 2 0.06
27 12 0.35
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (27 bp):
ATATACATTAAAAATATATATATATAC
Found at i:32957044 original size:18 final size:18
Alignment explanation
Indices: 32957021--32957055 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32957011 TTTTGGGCCG
* *
32957021 CGTTTGTAATTGGGCCAC
1 CGTTTGAAATCGGGCCAC
32957039 CGTTTGAAATCGGGCCA
1 CGTTTGAAATCGGGCCA
32957056 TGTGTTTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (18 bp):
CGTTTGAAATCGGGCCAC
Found at i:32957523 original size:44 final size:44
Alignment explanation
Indices: 32957469--32958140 Score: 402
Period size: 44 Copynumber: 15.3 Consensus size: 44
32957459 CTACTGTGAT
* * *
32957469 TTCAGCGAGATAAGATCCATGATTTTAATCCGCTCCACTGCAAC
1 TTCAGGGAGATAAGATCTATGATTTTAATCTGCTCCACTGCAAC
* ***
32957513 TTCAGGGAGATAGGAT-TATTGGCCTTAATCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGATCTA-TGATTTTAATCTGCTCCACTGCAAC
**** * * *
32957557 TTCAGGGAGATAAGATTCGCCCACTTCAGTCTGC-CTCACTGCAAC
1 TTCAGGGAGATAAGA-TCTATGATTTTAATCTGCTC-CACTGCAAC
* * * * *
32957602 CTCAGGGGGATAAGAT-TATAAGCTTAAATCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGATCTATGA-TTTTAATCTGCTCCACTGCAAC
* ** ** *
32957646 TTCAGAGAGATAAGAT-TCACCATTTTTGGGTCTGCCCCACTGCAAC
1 TTCAGGGAGATAAGATCT-ATGA-TTTT-AATCTGCTCCACTGCAAC
* * * *
32957692 TTCAGGGAGATAAGA-CTA-GA-TGTGATTTGCT-CTCTGCAAC
1 TTCAGGGAGATAAGATCTATGATTTTAATCTGCTCCACTGCAAC
* *
32957732 TTCAGAGAGATAAGATCTGTGATTTTAAT-TCGCTCCACTGCAAC
1 TTCAGGGAGATAAGATCTATGATTTTAATCT-GCTCCACTGCAAC
* ** * *
32957776 TTCAGGGAGATAGGAT-TATAGGCTTAAATCTGCTCCACTGCAAT
1 TTCAGGGAGATAAGATCTAT-GATTTTAATCTGCTCCACTGCAAC
* ** *
32957820 TTCAGGGAGATAAGAT-T-CGCCATTTTGGGTCTG-TCCCATTGCAAC
1 TTCAGGGAGATAAGATCTATG--ATTTT-AATCTGCT-CCACTGCAAC
* * *
32957865 TTCAGGGGGATAAGA-CT-TGCTTATTCAGTCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGATCTATGATT-TT-AATCTGCTCCACTGCAAC
* * *
32957909 TTCAGGGAGATAAGA-CTA-GA-TGTGATCTGCT-CTCTGCAAC
1 TTCAGGGAGATAAGATCTATGATTTTAATCTGCTCCACTGCAAC
* * *
32957949 TTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAAC
1 TTCAGGGAGATAAGATCTATGATTTTAATCTGCTCCACTGCAAC
* ** * * *
32957993 TTCAGGGAGATAGGAT-TATAGGCTTAAATCTACTCCATTGCAAC
1 TTCAGGGAGATAAGATCTAT-GATTTTAATCTGCTCCACTGCAAC
* * ** *
32958037 TTCAGGGAGATAATAT-T-CGCCATTTTGGGTCTGCCCCACTGCAAC
1 TTCAGGGAGATAAGATCTATG--ATTTT-AATCTGCTCCACTGCAAC
* * * * *
32958082 TTCAGGGGGATAA-AAC-CTGCTTATTCAGTCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGATCTATGATT-TT-AATCTGCTCCACTGCAAC
32958126 TTCAGGGAGATAAGA
1 TTCAGGGAGATAAGA
32958141 CTAGATGTCT
Statistics
Matches: 483, Mismatches: 109, Indels: 71
0.73 0.16 0.11
Matches are distributed among these distances:
40 44 0.09
41 15 0.03
42 10 0.02
43 26 0.05
44 264 0.55
45 94 0.19
46 30 0.06
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (44 bp):
TTCAGGGAGATAAGATCTATGATTTTAATCTGCTCCACTGCAAC
Found at i:32957634 original size:89 final size:89
Alignment explanation
Indices: 32957504--32958009 Score: 429
Period size: 89 Copynumber: 5.8 Consensus size: 89
32957494 TAATCCGCTC
* *
32957504 CACTGCAACTTCAGGGAGATAGGATTATTGGCCTT-AATCTGCTCCACTGCAACTTCAGGGAGAT
1 CACTGCAACTTCAGGGAGATAAGATTATAGG-CTTAAATCTGCTCCACTGCAACTTCAGGGAGAT
* *
32957568 AAGATTCGCCCA-CTTCAGTCTGCCT
65 AAGATTCG-CCATTTTGAGTCTGCCT
* * * *
32957593 CACTGCAACCTCAGGGGGATAAGATTATAAGCTTAAATCTGCTCCACTGCAACTTCAGAGAGATA
1 CACTGCAACTTCAGGGAGATAAGATTATAGGCTTAAATCTGCTCCACTGCAACTTCAGGGAGATA
* * *
32957658 AGATTCACCATTTTTGGGTCTGCCC
66 AGATTCGCCA-TTTTGAGTCTGCCT
* * * * * * *
32957683 CACTGCAACTTCAGGGAGATAAGACTAGATG--T-GATTTGCT-CTCTGCAACTTCAGAGAGATA
1 CACTGCAACTTCAGGGAGATAAGATTATAGGCTTAAATCTGCTCCACTGCAACTTCAGGGAGATA
** * *
32957744 AGA-TCTGTGATTTTAATTC-G-CT
66 AGATTC-GCCATTTTGAGTCTGCCT
* *
32957766 CCACTGCAACTTCAGGGAGATAGGATTATAGGCTTAAATCTGCTCCACTGCAATTTCAGGGAGAT
1 -CACTGCAACTTCAGGGAGATAAGATTATAGGCTTAAATCTGCTCCACTGCAACTTCAGGGAGAT
*
32957831 AAGATTCGCCATTTTGGGTCTGTCC-
65 AAGATTCGCCATTTTGAGTCTG-CCT
* * * *
32957856 CATTGCAACTTCAGGGGGATAAGACT-T--GCTTATTCAGTCTGCTCCACTGCAACTTCAGGGAG
1 CACTGCAACTTCAGGGAGATAAGATTATAGGCTTA---AATCTGCTCCACTGCAACTTCAGGGAG
* * *
32957918 ATAAGACTAG--A-TGTGA-TCTG-CT
63 ATAAGATTCGCCATTTTGAGTCTGCCT
* * * ** * *
32957940 CTCTGCAACTTCAGAGAGATAAGATCTGT-GATTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
1 CACTGCAACTTCAGGGAGATAAGAT-TATAGGCTTAAATCTGCTCCACTGCAACTTCAGGGAGAT
*
32958004 AGGATT
65 AAGATT
32958010 ATAGGCTTAA
Statistics
Matches: 335, Mismatches: 62, Indels: 45
0.76 0.14 0.10
Matches are distributed among these distances:
83 2 0.01
84 79 0.24
85 13 0.04
86 34 0.10
87 15 0.04
88 37 0.11
89 119 0.36
90 35 0.10
91 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (89 bp):
CACTGCAACTTCAGGGAGATAAGATTATAGGCTTAAATCTGCTCCACTGCAACTTCAGGGAGATA
AGATTCGCCATTTTGAGTCTGCCT
Found at i:32957954 original size:217 final size:217
Alignment explanation
Indices: 32957675--32958148 Score: 849
Period size: 217 Copynumber: 2.2 Consensus size: 217
32957665 CCATTTTTGG
* *
32957675 GTCTGCCCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATTTGCTCTCTGCAACTTCAGAGA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTCTGCAACTTCAGAGA
*
32957740 GATAAGATCTGTGATTTTAATTCGCTCCACTGCAACTTCAGGGAGATAGGATTATAGGCTTAAAT
66 GATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATAGGCTTAAAT
* * * *
32957805 CTGCTCCACTGCAATTTCAGGGAGATAAGATTCGCCATTTTGGGTCTGTCCCATTGCAACTTCAG
131 CTACTCCACTGCAACTTCAGGGAGATAAGATTCGCCATTTTGGGTCTGCCCCACTGCAACTTCAG
* *
32957870 GGGGATAAGACTTGCTTATTCA
196 GGGGATAAAACCTGCTTATTCA
32957892 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTCTGCAACTTCAGAGA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTCTGCAACTTCAGAGA
32957957 GATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATAGGCTTAAAT
66 GATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATAGGCTTAAAT
* *
32958022 CTACTCCATTGCAACTTCAGGGAGATAATATTCGCCATTTTGGGTCTGCCCCACTGCAACTTCAG
131 CTACTCCACTGCAACTTCAGGGAGATAAGATTCGCCATTTTGGGTCTGCCCCACTGCAACTTCAG
32958087 GGGGATAAAACCTGCTTATTCA
196 GGGGATAAAACCTGCTTATTCA
32958109 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGT
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGT
32958149 CTTCGATCTG
Statistics
Matches: 246, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
217 246 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (217 bp):
GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTCTGCAACTTCAGAGA
GATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATAGGCTTAAAT
CTACTCCACTGCAACTTCAGGGAGATAAGATTCGCCATTTTGGGTCTGCCCCACTGCAACTTCAG
GGGGATAAAACCTGCTTATTCA
Found at i:32958246 original size:88 final size:88
Alignment explanation
Indices: 32958146--32958367 Score: 311
Period size: 88 Copynumber: 2.5 Consensus size: 88
32958136 TAAGACTAGA
* * * *
32958146 TGTCTTCGATCTGCTTTGCTATCGGTGCAGGAATGCAAGATTTGCTATTTTTAGCCTGCTCTACT
1 TGTCTTCGATCTGCTTTGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCTACT
*
32958211 GCAGCCCAGGGAGGCAAGGCTGG
66 GCAACCCAGGGAGGCAAGGCTGG
* * * * *
32958234 TGTCTTTGATCTG-TTTCGCTGTTGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTTTGC
1 TGTCTTCGATCTGCTTT-GCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCTAC
32958298 TGCAACCCAGGGAGGCAAGGCTGG
65 TGCAACCCAGGGAGGCAAGGCTGG
** *
32958322 TGTCTTCGATCTGCTTCACTGTCAGTGCAGGAAGGCAAGATCTGCT
1 TGTCTTCGATCTGCTTTGCTGTCGGTGCAGGAAGGCAAGATCTGCT
32958368 CTCTTCACTG
Statistics
Matches: 116, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
87 3 0.03
88 111 0.96
89 2 0.02
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.32
Consensus pattern (88 bp):
TGTCTTCGATCTGCTTTGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCTACT
GCAACCCAGGGAGGCAAGGCTGG
Found at i:32959976 original size:103 final size:103
Alignment explanation
Indices: 32959850--32960081 Score: 392
Period size: 103 Copynumber: 2.3 Consensus size: 103
32959840 ATTGCATATA
*
32959850 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATT
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
*
32959915 TTAAATGTGAGAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
* * *
32959953 AAGGGGTTGCTGTGTGTTGATTCCCCGATTCATTGGTGGTTGCTAAGTGTTGATTGCACCGTATT
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
32960018 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
* **
32960056 GAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGTTGCTGTGTGCTGATTCCCC
32960082 CAAGGGGTTG
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 120 1.00
ACGTcount: A:0.18, C:0.18, G:0.31, T:0.34
Consensus pattern (103 bp):
AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:32960061 original size:27 final size:27
Alignment explanation
Indices: 32960031--32960108 Score: 129
Period size: 27 Copynumber: 2.9 Consensus size: 27
32960021 AATGTGAAAG
*
32960031 GGGGTTGCTAAGTGCTGATTCCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCCAA
32960058 GGGGTTGCTAAGTGCTGATTCCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCCAA
**
32960085 GGGGTTGCTGTGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
32960109 GATTCATTAG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.13, C:0.26, G:0.33, T:0.28
Consensus pattern (27 bp):
GGGGTTGCTAAGTGCTGATTCCCCCAA
Found at i:32971382 original size:14 final size:15
Alignment explanation
Indices: 32971359--32971391 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
32971349 ATCGACGCTT
32971359 TTCCAAATAAGGT-C
1 TTCCAAATAAGGTCC
*
32971373 TTCCACATAAGGTCC
1 TTCCAAATAAGGTCC
32971388 TTCC
1 TTCC
32971392 CAGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.30
Consensus pattern (15 bp):
TTCCAAATAAGGTCC
Found at i:32976489 original size:20 final size:21
Alignment explanation
Indices: 32976450--32976501 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
32976440 ATATGTACAA
* *
32976450 AAAAACAACAAATATACATAT
1 AAAAATAAAAAATATACATAT
* *
32976471 ATAGATAAAAAAT-TACATAT
1 AAAAATAAAAAATATACATAT
32976491 AAAAATAAAAA
1 AAAAATAAAAA
32976502 TAATAATTAC
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.69, C:0.08, G:0.02, T:0.21
Consensus pattern (21 bp):
AAAAATAAAAAATATACATAT
Found at i:32977676 original size:18 final size:18
Alignment explanation
Indices: 32977653--32977687 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32977643 TTTTGGGCCG
* *
32977653 CGTTTGTAATTGGGCCAC
1 CGTTTGAAATCGGGCCAC
32977671 CGTTTGAAATCGGGCCA
1 CGTTTGAAATCGGGCCA
32977688 TGTATTTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (18 bp):
CGTTTGAAATCGGGCCAC
Found at i:32979745 original size:45 final size:45
Alignment explanation
Indices: 32979664--32979757 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 45
32979654 AAACCCTCCA
* *
32979664 AAACTCTTTTCCTTTTATTTTCCCTCAAAACCTTTACTT-TCCCC
1 AAACTCTTTTCCTTTTACTTTCCCTCAAAACCTTTACTTCCCCCC
* * *
32979708 AAACTTTTTTCCTTTTACTTTCTCTCCAAAACTTTTACTTCCCCCC
1 AAACTCTTTTCCTTTTACTTTCCCT-CAAAACCTTTACTTCCCCCC
32979754 AAAC
1 AAAC
32979758 CCAAGTTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 22 0.51
45 13 0.30
46 8 0.19
ACGTcount: A:0.22, C:0.34, G:0.00, T:0.44
Consensus pattern (45 bp):
AAACTCTTTTCCTTTTACTTTCCCTCAAAACCTTTACTTCCCCCC
Found at i:32980320 original size:5 final size:5
Alignment explanation
Indices: 32980310--32980335 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
32980300 ACTTTTTTTT
32980310 ATTTG ATTTG ATTTG ATTTG ATTTG A
1 ATTTG ATTTG ATTTG ATTTG ATTTG A
32980336 CCGAATGCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.58
Consensus pattern (5 bp):
ATTTG
Found at i:32982720 original size:50 final size:50
Alignment explanation
Indices: 32982590--32982886 Score: 296
Period size: 50 Copynumber: 5.8 Consensus size: 50
32982580 ATTTGGGTAA
* * *
32982590 AGAGATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATCATTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
* *
32982646 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
32982696 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
32982746 AGAGGTCCTC-TGTAAGACCATGTTTGGGACATGGCATGGGCACAG-GTATG
1 AGAGGTCC-CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG-ATG
** * * * * *
32982796 AGAACTTCCATTTAAGACCATATCTGGGATATGGCATTGGCA--GTACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** * *
32982845 AAACATCCCATGTAAAACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32982887 TGTTATTATC
Statistics
Matches: 208, Mismatches: 28, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
48 1 0.00
49 38 0.18
50 125 0.60
51 1 0.00
53 3 0.01
55 1 0.00
56 39 0.19
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:32992952 original size:26 final size:26
Alignment explanation
Indices: 32992916--32992969 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
32992906 GGAAGTTAGT
32992916 TGATCATTTTGACCAAATTGAGTACA
1 TGATCATTTTGACCAAATTGAGTACA
32992942 TGATCATTTTGACCAAATTGAGTACA
1 TGATCATTTTGACCAAATTGAGTACA
32992968 TG
1 TG
32992970 GTTATACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (26 bp):
TGATCATTTTGACCAAATTGAGTACA
Found at i:32999444 original size:31 final size:31
Alignment explanation
Indices: 32999404--32999535 Score: 108
Period size: 31 Copynumber: 4.3 Consensus size: 31
32999394 CTAATGCTCC
* *
32999404 AATC-AATTCAGCAATATATATTTATATACG
1 AATCAAATTCAGCAATATATAATCATATACG
* * * *
32999434 AATCAAATTCAACAATGA-ATATTGATATACC
1 AATCAAATTCAGCAAT-ATATAATCATATACG
* * * *
32999465 AAGC-AATTCGGCAATATATAACCATATAAG
1 AATCAAATTCAGCAATATATAATCATATACG
** * *
32999495 AATCAAATTTGGCAATGTATAATCATATACA
1 AATCAAATTCAGCAATATATAATCATATACG
32999526 AATCAAATTC
1 AATCAAATTC
32999536 GACATCCTAT
Statistics
Matches: 80, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
29 1 0.01
30 24 0.30
31 54 0.68
32 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.30
Consensus pattern (31 bp):
AATCAAATTCAGCAATATATAATCATATACG
Done.