Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 11 of 208
Found at i:3330237 original size:17 final size:17
Alignment explanation
Indices: 3330199--3330237 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
3330189 TATGATATAG
* *
3330199 CATATATATCATATTTA
1 CATATATATAATATTAA
3330216 CATATATATAATATTAA
1 CATATATATAATATTAA
*
3330233 TATAT
1 CATAT
3330238 TTTAATATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (17 bp):
CATATATATAATATTAA
Found at i:3330259 original size:25 final size:26
Alignment explanation
Indices: 3330212--3330260 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
3330202 ATATATCATA
**
3330212 TTTACATATATATAATATTAATATAT
1 TTTACATATATATAATAAAAATATAT
*
3330238 TTTA-ATATATATACTAAAAATAT
1 TTTACATATATATAATAAAAATAT
3330261 TACATAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (26 bp):
TTTACATATATATAATAAAAATATAT
Found at i:3330389 original size:24 final size:24
Alignment explanation
Indices: 3330361--3330407 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
3330351 TTAAACTATT
*
3330361 ATTATGAAGCATCTTACAGTTTTC
1 ATTATGAAGCATCTTAAAGTTTTC
*
3330385 ATTATGAAGTATCTTAAAGTTTT
1 ATTATGAAGCATCTTAAAGTTTT
3330408 TTCTAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.45
Consensus pattern (24 bp):
ATTATGAAGCATCTTAAAGTTTTC
Found at i:3330638 original size:26 final size:26
Alignment explanation
Indices: 3330603--3330655 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3330593 CTTTTCAGAG
3330603 AAAAGACTAATTTGTTATTTGATCTA
1 AAAAGACTAATTTGTTATTTGATCTA
3330629 AAAAGACTAATTTGTTATTTGATCTA
1 AAAAGACTAATTTGTTATTTGATCTA
3330655 A
1 A
3330656 CATTTAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.42
Consensus pattern (26 bp):
AAAAGACTAATTTGTTATTTGATCTA
Found at i:3334524 original size:20 final size:21
Alignment explanation
Indices: 3334501--3334540 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3334491 GAAAAAGAAA
3334501 ATTT-AAAATTTAAAAATATT
1 ATTTAAAAATTTAAAAATATT
*
3334521 ATTTAAAAATTTATAAATAT
1 ATTTAAAAATTTAAAAATAT
3334541 CTATCTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTTAAAAATTTAAAAATATT
Found at i:3337771 original size:20 final size:19
Alignment explanation
Indices: 3337709--3337776 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 19
3337699 TTTAAATATT
*
3337709 TAAAA-ATTCTAAAAAATA
1 TAAAATATTATAAAAAATA
*
3337727 TTAACAATATTA-AAAGAAGTA
1 -TAA-AATATTATAAA-AAATA
3337748 TAAAATATTATAAAAACATA
1 TAAAATATTATAAAAA-ATA
3337768 TAAAATATT
1 TAAAATATT
3337777 TTTTAATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
19 12 0.29
20 22 0.54
21 7 0.17
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (19 bp):
TAAAATATTATAAAAAATA
Found at i:3344865 original size:25 final size:26
Alignment explanation
Indices: 3344836--3344905 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
3344826 TGAACTTGAC
* * *
3344836 ATTTTTTTTTCTAATTTGGTA-CTTA
1 ATTTTTTTATCCAATTTGGTACCTAA
*
3344861 ATTTTTTTATCCAATTTAGTACCTAA
1 ATTTTTTTATCCAATTTGGTACCTAA
*
3344887 ATTTTTTTGTCCAATTTGG
1 ATTTTTTTATCCAATTTGG
3344906 CATCTAAACT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
25 18 0.47
26 20 0.53
ACGTcount: A:0.23, C:0.11, G:0.09, T:0.57
Consensus pattern (26 bp):
ATTTTTTTATCCAATTTGGTACCTAA
Found at i:3344866 original size:26 final size:25
Alignment explanation
Indices: 3344836--3344905 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
3344826 TGAACTTGAC
* * *
3344836 ATTTTTTTTTCTAATTTGGTACTTA
1 ATTTTTTTATCCAATTTGGTACCTA
*
3344861 ATTTTTTTATCCAATTTAGTACCTAA
1 ATTTTTTTATCCAATTTGGTACCT-A
*
3344887 ATTTTTTTGTCCAATTTGG
1 ATTTTTTTATCCAATTTGG
3344906 CATCTAAACT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
25 20 0.53
26 18 0.47
ACGTcount: A:0.23, C:0.11, G:0.09, T:0.57
Consensus pattern (25 bp):
ATTTTTTTATCCAATTTGGTACCTA
Found at i:3354492 original size:28 final size:28
Alignment explanation
Indices: 3354459--3354515 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
3354449 TTTTGTATTT
* *
3354459 TTTATATCAATATTAATAATTTAATAAA
1 TTTATATAAATATGAATAATTTAATAAA
* *
3354487 TTTATATAAATATGAATATTTTTATAAA
1 TTTATATAAATATGAATAATTTAATAAA
3354515 T
1 T
3354516 ATGCATTATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (28 bp):
TTTATATAAATATGAATAATTTAATAAA
Found at i:3377127 original size:9 final size:9
Alignment explanation
Indices: 3377113--3377244 Score: 51
Period size: 9 Copynumber: 14.2 Consensus size: 9
3377103 ATTTTTCTCA
3377113 TAAAAATAT
1 TAAAAATAT
3377122 TAAAAAATCAT
1 T-AAAAAT-AT
3377133 TAAAAA-A-
1 TAAAAATAT
3377140 TAAGAGAA-AT
1 TAA-A-AATAT
*
3377150 TAGAAAAATTT
1 T--AAAAATAT
*
3377161 ATAAAAAAAT
1 -TAAAAATAT
3377171 TAAAAATGAT
1 TAAAAAT-AT
*
3377181 ATAAAATTAT
1 -TAAAAATAT
*
3377191 TAAAATTA-
1 TAAAAATAT
*
3377199 TAAAATTAAT
1 TAAAAAT-AT
* **
3377209 TGAACCTAT
1 TAAAAATAT
*
3377218 TTAAAATAT
1 TAAAAATAT
3377227 TAAAAATA-
1 TAAAAATAT
3377235 -AAAAATAT
1 TAAAAATAT
3377243 TA
1 TA
3377245 GAATTCTTAA
Statistics
Matches: 96, Mismatches: 12, Indels: 30
0.70 0.09 0.22
Matches are distributed among these distances:
7 10 0.10
8 9 0.09
9 35 0.36
10 28 0.29
11 11 0.11
12 3 0.03
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (9 bp):
TAAAAATAT
Found at i:3377175 original size:19 final size:19
Alignment explanation
Indices: 3377153--3377203 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
3377143 GAGAAATTAG
3377153 AAAAATTTATAAAAAAATT
1 AAAAATTTATAAAAAAATT
* **
3377172 AAAAATGATATAAAATTATT
1 AAAAAT-TTATAAAAAAATT
3377192 -AAAA-TTATAAAA
1 AAAAATTTATAAAA
3377204 TTAATTGAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 7 0.26
19 10 0.37
20 10 0.37
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAAATTTATAAAAAAATT
Found at i:3377345 original size:29 final size:30
Alignment explanation
Indices: 3377308--3377366 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
3377298 CTACGTTTAA
3377308 TGTGCAATTGTACACAT-GAATTTTAATTT
1 TGTGCAATTGTACACATGGAATTTTAATTT
* * * *
3377337 TGTGTAATTTTATACATGGAATTTTGATTT
1 TGTGCAATTGTACACATGGAATTTTAATTT
3377367 GATCCAATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (30 bp):
TGTGCAATTGTACACATGGAATTTTAATTT
Found at i:3377604 original size:10 final size:10
Alignment explanation
Indices: 3377589--3377622 Score: 52
Period size: 9 Copynumber: 3.4 Consensus size: 10
3377579 GATTTATCCC
3377589 TAAAATTTAT
1 TAAAATTTAT
3377599 TAAAA-TTAT
1 TAAAATTTAT
3377608 TAAAATTTAT
1 TAAAATTTAT
3377618 ATAAA
1 -TAAA
3377623 CTTATAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.41
10 9 0.41
11 4 0.18
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TAAAATTTAT
Found at i:3377613 original size:19 final size:19
Alignment explanation
Indices: 3377589--3377631 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
3377579 GATTTATCCC
3377589 TAAAATTTAT-TAAAATTA
1 TAAAATTTATATAAAATTA
*
3377607 TTAAAATTTATATAAACTTA
1 -TAAAATTTATATAAAATTA
3377627 TAAAA
1 TAAAA
3377632 AGAATCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAAATTTATATAAAATTA
Found at i:3378132 original size:21 final size:20
Alignment explanation
Indices: 3378108--3378163 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
3378098 CTTTTATGGC
*
3378108 TTTTTTATATTTTTAATATGT
1 TTTTTTA-ATTTTAAATATGT
*
3378129 TTTTATAAAATTTTAAATATGT
1 TTTT-T-TAATTTTAAATATGT
*
3378151 TTTATTAATTTTA
1 TTTTTTAATTTTA
3378164 TAAAATTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 7 0.24
21 5 0.17
22 16 0.55
23 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (20 bp):
TTTTTTAATTTTAAATATGT
Found at i:3378300 original size:28 final size:30
Alignment explanation
Indices: 3378269--3378329 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 30
3378259 ATTTTCTGAT
* *
3378269 TTTTTTG-TATTTTTGTA-ATTTTTTATAA
1 TTTTTTGATAATTTTCTATATTTTTTATAA
3378297 --TTTTGATAATTTTCTATATTTTTTATAA
1 TTTTTTGATAATTTTCTATATTTTTTATAA
3378325 TTTTT
1 TTTTT
3378330 AAATATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
26 5 0.19
27 8 0.30
28 11 0.41
30 3 0.11
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (30 bp):
TTTTTTGATAATTTTCTATATTTTTTATAA
Found at i:3378330 original size:9 final size:9
Alignment explanation
Indices: 3378188--3378341 Score: 68
Period size: 9 Copynumber: 17.0 Consensus size: 9
3378178 ATTTCATTAG
3378188 AATTTTTAT
1 AATTTTTAT
3378197 -A-TTTTAT
1 AATTTTTAT
*
3378204 AATATTTAT
1 AATTTTTAT
*
3378213 AA-ATTTAT
1 AATTTTTAT
*
3378221 -ATCTTTTTT
1 AAT-TTTTAT
*
3378230 GATCTTTT-T
1 AAT-TTTTAT
*
3378239 TATTTTT-T
1 AATTTTTAT
*
3378247 AATATTTAAT
1 AAT-TTTTAT
* *
3378257 AAATTTTCT
1 AATTTTTAT
* *
3378266 GATTTTTTT
1 AATTTTTAT
* *
3378275 GTATTTTTGT
1 -AATTTTTAT
3378285 AATTTTTTAT
1 AA-TTTTTAT
*
3378295 AATTTTGAT
1 AATTTTTAT
3378304 AATTTTCTAT
1 AATTTT-TAT
*
3378314 ATTTTTTAT
1 AATTTTTAT
*
3378323 AATTTTTAA
1 AATTTTTAT
3378332 ATATTTTTAT
1 A-ATTTTTAT
3378342 GAAAAAATAT
Statistics
Matches: 112, Mismatches: 22, Indels: 21
0.72 0.14 0.14
Matches are distributed among these distances:
7 7 0.06
8 15 0.13
9 51 0.46
10 39 0.35
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (9 bp):
AATTTTTAT
Found at i:3378338 original size:19 final size:19
Alignment explanation
Indices: 3378189--3378341 Score: 76
Period size: 19 Copynumber: 8.4 Consensus size: 19
3378179 TTTCATTAGA
3378189 ATTTTTAT-A-TTTTATA-
1 ATTTTTATAATTTTTATAT
* *
3378205 ATATTTATAA-ATTTATAT
1 ATTTTTATAATTTTTATAT
* *
3378223 CTTTTT-TGATCTTTT-T-T
1 ATTTTTATAAT-TTTTATAT
*
3378240 ATTTTT-TAATATTTA-AT
1 ATTTTTATAATTTTTATAT
* * * * *
3378257 AAATTTTCTGATTTTTTTGT
1 -ATTTTTATAATTTTTATAT
*
3378277 ATTTTTGTAATTTTT-TAT
1 ATTTTTATAATTTTTATAT
*
3378295 AATTTTGATAATTTTCTATAT
1 -ATTTTTATAATTTT-TATAT
*
3378316 -TTTTTATAATTTTTAAAT
1 ATTTTTATAATTTTTATAT
3378334 ATTTTTAT
1 ATTTTTAT
3378342 GAAAAAATAT
Statistics
Matches: 102, Mismatches: 22, Indels: 23
0.69 0.15 0.16
Matches are distributed among these distances:
16 10 0.10
17 19 0.19
18 16 0.16
19 52 0.51
20 2 0.02
21 3 0.03
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (19 bp):
ATTTTTATAATTTTTATAT
Found at i:3381850 original size:22 final size:22
Alignment explanation
Indices: 3381808--3381851 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
3381798 ATAATATTTA
**
3381808 ATTTTGATAATAATACTCAAAT
1 ATTTTGATAATAATAAACAAAT
3381830 ATTTT-ATGAATAATAAACAAAT
1 ATTTTGAT-AATAATAAACAAAT
3381852 TCAAATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.39
Consensus pattern (22 bp):
ATTTTGATAATAATAAACAAAT
Found at i:3383345 original size:38 final size:38
Alignment explanation
Indices: 3383303--3383403 Score: 121
Period size: 47 Copynumber: 2.4 Consensus size: 38
3383293 TATTTAATTG
3383303 AAAATATTAAAAATATTTTACATATTAGATTAATTATT
1 AAAATATTAAAAATATTTTACATATTAGATTAATTATT
3383341 AAAATATTAAAAATATCTTGATTATTTTACATATTAGATTAATTATT
1 AAAATATT--AAA-A-----A-TATTTTACATATTAGATTAATTATT
3383388 AAAATATTAAAAATAT
1 AAAATATTAAAAATAT
3383404 CTGTTACGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 18
0.75 0.00 0.25
Matches are distributed among these distances:
38 11 0.20
39 1 0.02
40 3 0.06
41 1 0.02
44 1 0.02
45 3 0.06
46 1 0.02
47 33 0.61
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (38 bp):
AAAATATTAAAAATATTTTACATATTAGATTAATTATT
Found at i:3383367 original size:47 final size:47
Alignment explanation
Indices: 3383316--3383405 Score: 180
Period size: 47 Copynumber: 1.9 Consensus size: 47
3383306 ATATTAAAAA
3383316 TATTTTACATATTAGATTAATTATTAAAATATTAAAAATATCTTGAT
1 TATTTTACATATTAGATTAATTATTAAAATATTAAAAATATCTTGAT
3383363 TATTTTACATATTAGATTAATTATTAAAATATTAAAAATATCT
1 TATTTTACATATTAGATTAATTATTAAAATATTAAAAATATCT
3383406 GTTACGAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (47 bp):
TATTTTACATATTAGATTAATTATTAAAATATTAAAAATATCTTGAT
Found at i:3385365 original size:11 final size:11
Alignment explanation
Indices: 3385351--3385376 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
3385341 ATTTTTTTCT
3385351 TGTTTTTATAG
1 TGTTTTTATAG
3385362 TGTTTTTATAG
1 TGTTTTTATAG
3385373 TGTT
1 TGTT
3385377 AATCGCCTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.19, T:0.65
Consensus pattern (11 bp):
TGTTTTTATAG
Found at i:3386576 original size:23 final size:23
Alignment explanation
Indices: 3386547--3386616 Score: 122
Period size: 23 Copynumber: 3.0 Consensus size: 23
3386537 CTCACTTGTG
3386547 ATAAAGTTTATGTACTTTATTAC
1 ATAAAGTTTATGTACTTTATTAC
*
3386570 ATAAAGTTTATGTACTTCATTAC
1 ATAAAGTTTATGTACTTTATTAC
*
3386593 ATAAAGCTTATGTACTTTATTAC
1 ATAAAGTTTATGTACTTTATTAC
3386616 A
1 A
3386617 AGGGATCTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (23 bp):
ATAAAGTTTATGTACTTTATTAC
Found at i:3398446 original size:18 final size:17
Alignment explanation
Indices: 3398420--3398455 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
3398410 CCTGTCCATG
*
3398420 GGCCGGACGGCCCGGCCC
1 GGCCCGACGGCCC-GCCC
3398438 GGCCCGACGGCCCGCCC
1 GGCCCGACGGCCCGCCC
3398455 G
1 G
3398456 AAATATGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.06, C:0.53, G:0.42, T:0.00
Consensus pattern (17 bp):
GGCCCGACGGCCCGCCC
Found at i:3408571 original size:21 final size:21
Alignment explanation
Indices: 3408545--3408588 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
3408535 CCCTCTTTCA
3408545 ACTCCGACAAGAACAAAAATG
1 ACTCCGACAAGAACAAAAATG
**
3408566 ACTCCGACACTAACAAAAATG
1 ACTCCGACAAGAACAAAAATG
3408587 AC
1 AC
3408589 AATAGCAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.50, C:0.27, G:0.11, T:0.11
Consensus pattern (21 bp):
ACTCCGACAAGAACAAAAATG
Found at i:3409087 original size:66 final size:66
Alignment explanation
Indices: 3409010--3409143 Score: 241
Period size: 66 Copynumber: 2.0 Consensus size: 66
3409000 CAACTGTTGA
*
3409010 AGAGGCCAGTTTGATCAAAAAGAAAAGACTGAAATTGGAAGAGATTGTAGTGTGTACTGGCATCA
1 AGAGGCCAGTTTGATCAAAAAGAAAAGACAGAAATTGGAAGAGATTGTAGTGTGTACTGGCATCA
3409075 T
66 T
**
3409076 AGAGGCCAGTTTGATCAGGAAGAAAAGACAGAAATTGGAAGAGATTGTAGTGTGTACTGGCATCA
1 AGAGGCCAGTTTGATCAAAAAGAAAAGACAGAAATTGGAAGAGATTGTAGTGTGTACTGGCATCA
3409141 T
66 T
3409142 AG
1 AG
3409144 TTTTTGCTTC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.23
Consensus pattern (66 bp):
AGAGGCCAGTTTGATCAAAAAGAAAAGACAGAAATTGGAAGAGATTGTAGTGTGTACTGGCATCA
T
Found at i:3412059 original size:14 final size:14
Alignment explanation
Indices: 3412040--3412076 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
3412030 CAACTACCCA
3412040 TCACCCACGTCGCT
1 TCACCCACGTCGCT
3412054 TCACCCACGTCGCT
1 TCACCCACGTCGCT
3412068 TCACCCACG
1 TCACCCACG
3412077 ATCAGCAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.16, C:0.51, G:0.14, T:0.19
Consensus pattern (14 bp):
TCACCCACGTCGCT
Found at i:3412963 original size:20 final size:20
Alignment explanation
Indices: 3412938--3413003 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
3412928 GTTTTTTTAG
3412938 ATTATTTTTAATATGTTATT
1 ATTATTTTTAATATGTTATT
* *
3412958 ATTATTATTT-TTAT-CTATT
1 ATTATT-TTTAATATGTTATT
* * *
3412977 TTTAATTATTACTATGTTATT
1 ATT-ATTTTTAATATGTTATT
3412998 ATTATT
1 ATTATT
3413004 GTATCTGTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.23
20 18 0.51
21 9 0.26
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (20 bp):
ATTATTTTTAATATGTTATT
Found at i:3416059 original size:21 final size:22
Alignment explanation
Indices: 3416026--3416069 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
3416016 GATATTTTAT
*
3416026 TATAAAT-ATTTTAATTAATTA
1 TATAAATAATTTAAATTAATTA
* *
3416047 TATAATTAATTTAAATTATTTA
1 TATAAATAATTTAAATTAATTA
3416069 T
1 T
3416070 TAGATGTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TATAAATAATTTAAATTAATTA
Found at i:3448135 original size:34 final size:34
Alignment explanation
Indices: 3448089--3448154 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
3448079 CTACACAGTC
*
3448089 GCTTAAAAATGCCATAATTAAGAATAAATAAATA
1 GCTTAAAAATGCCACAATTAAGAATAAATAAATA
* *
3448123 GCTTTAAAATGCCACAATTAAGAATAGATAAA
1 GCTTAAAAATGCCACAATTAAGAATAAATAAA
3448155 CAATAATGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (34 bp):
GCTTAAAAATGCCACAATTAAGAATAAATAAATA
Found at i:3450078 original size:29 final size:27
Alignment explanation
Indices: 3450028--3450107 Score: 88
Period size: 29 Copynumber: 2.8 Consensus size: 27
3450018 TAAGTCCTTG
* * *
3450028 TATTTTTTATAAATTCAAAATTTAGTCAC
1 TATTTTTT-TAATTTTAAAATTTAATC-C
3450057 TATTTTTTTAATTTTAAGAATTTAATCC
1 TATTTTTTTAATTTTAA-AATTTAATCC
3450085 TATATTTTTTAGATTTTAAAATT
1 TAT-TTTTTTA-ATTTTAAAATT
3450108 CAAGTCCAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
28 11 0.24
29 27 0.60
30 7 0.16
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (27 bp):
TATTTTTTTAATTTTAAAATTTAATCC
Found at i:3455163 original size:23 final size:23
Alignment explanation
Indices: 3455124--3455168 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
3455114 AACTTAAAAT
3455124 TTGAAATATAAATAATAAAATAA
1 TTGAAATATAAATAATAAAATAA
*
3455147 TTGAATATCTAAA-AATAAAATA
1 TTGAA-ATATAAATAATAAAATA
3455169 CATATTCGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (23 bp):
TTGAAATATAAATAATAAAATAA
Found at i:3459622 original size:25 final size:25
Alignment explanation
Indices: 3459605--3459658 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
3459595 ATTAATAGGT
3459605 AAAT-ACA-ATGCAGTTATTAACAG
1 AAATAACAGATGCAGTTATTAACAG
*
3459628 AAATAACAGCTGCAGTTATTAACAG
1 AAATAACAGATGCAGTTATTAACAG
3459653 -AATAAC
1 AAATAAC
3459659 GGCTGCTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 4 0.14
24 9 0.32
25 15 0.54
ACGTcount: A:0.48, C:0.15, G:0.13, T:0.24
Consensus pattern (25 bp):
AAATAACAGATGCAGTTATTAACAG
Found at i:3459663 original size:24 final size:25
Alignment explanation
Indices: 3459613--3459664 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
3459603 GTAAATACAA
3459613 TGCAGTTATTAACAGAAATAACAGC
1 TGCAGTTATTAACAGAAATAACAGC
*
3459638 TGCAGTTATTAACAG-AATAACGGC
1 TGCAGTTATTAACAGAAATAACAGC
3459662 TGC
1 TGC
3459665 TTAACACCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (25 bp):
TGCAGTTATTAACAGAAATAACAGC
Found at i:3463028 original size:18 final size:18
Alignment explanation
Indices: 3463005--3463039 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
3462995 TTTGTAGGAG
*
3463005 CATCATGGAGTTGATGAC
1 CATCATGGAATTGATGAC
3463023 CATCATGGAATTGATGA
1 CATCATGGAATTGATGA
3463040 TAGTTAACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (18 bp):
CATCATGGAATTGATGAC
Found at i:3464210 original size:24 final size:25
Alignment explanation
Indices: 3464160--3464211 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
3464150 GTAAATACAT
3464160 TGCAGTTATTAACAGAAATAACAGC
1 TGCAGTTATTAACAGAAATAACAGC
*
3464185 TGCAGTTATTAACAG-AATAACGGC
1 TGCAGTTATTAACAGAAATAACAGC
3464209 TGC
1 TGC
3464212 TTAACACCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (25 bp):
TGCAGTTATTAACAGAAATAACAGC
Found at i:3467806 original size:48 final size:48
Alignment explanation
Indices: 3467752--3467851 Score: 155
Period size: 48 Copynumber: 2.1 Consensus size: 48
3467742 ATAATGCACA
*
3467752 TCAACACACTTAAACCCACACAATTTTAGACTCTTAAAAATTAACAAT
1 TCAACACACTCAAACCCACACAATTTTAGACTCTTAAAAATTAACAAT
* ** *
3467800 TCAACACACTCAAACTCAGGCGATTTTAGACTCTTAAAAATTAACAAT
1 TCAACACACTCAAACCCACACAATTTTAGACTCTTAAAAATTAACAAT
3467848 TCAA
1 TCAA
3467852 TTTAATTTAG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.44, C:0.24, G:0.05, T:0.27
Consensus pattern (48 bp):
TCAACACACTCAAACCCACACAATTTTAGACTCTTAAAAATTAACAAT
Found at i:3473715 original size:5 final size:5
Alignment explanation
Indices: 3473705--3473729 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
3473695 TTATTTATAA
3473705 TTAAT TTAAT TTAAT TTAAT TTAAT
1 TTAAT TTAAT TTAAT TTAAT TTAAT
3473730 ATGATATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTAAT
Found at i:3476812 original size:25 final size:24
Alignment explanation
Indices: 3476780--3476848 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
3476770 CGAAATGATT
* *
3476780 AAAAACTTGATGGAAAATTTTAGG
1 AAAAACTTGATGAAAAACTTTAGG
*
3476804 AAAAGACTTGATGAAAAACTTTA-A
1 AAAA-ACTTGATGAAAAACTTTAGG
* *
3476828 AAAGAACTTGCTGCAAAACTT
1 AAA-AACTTGATGAAAAACTT
3476849 GATAAAAAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
24 21 0.55
25 17 0.45
ACGTcount: A:0.48, C:0.10, G:0.16, T:0.26
Consensus pattern (24 bp):
AAAAACTTGATGAAAAACTTTAGG
Found at i:3476836 original size:24 final size:25
Alignment explanation
Indices: 3476783--3476897 Score: 74
Period size: 25 Copynumber: 4.6 Consensus size: 25
3476773 AATGATTAAA
* * *
3476783 AACTTGATGGAAAATTTTAGGAAAAG
1 AACTTGATGAAAAACTTGA-GAAAAG
*
3476809 -ACTTGATGAAAAACTTTA-AAAAG
1 AACTTGATGAAAAACTTGAGAAAAG
* * *
3476832 AACTTGCTGCAAAACTTGATAAAA-
1 AACTTGATGAAAAACTTGAGAAAAG
** *
3476856 AACTTGGTAATTTAAAACTTGATAAAAG
1 AACTT-G--ATGAAAAACTTGAGAAAAG
*
3476884 AACTAGATGAAAAA
1 AACTTGATGAAAAA
3476898 TACTTGAAGA
Statistics
Matches: 72, Mismatches: 11, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
23 5 0.07
24 20 0.28
25 27 0.38
27 16 0.22
28 4 0.06
ACGTcount: A:0.50, C:0.09, G:0.16, T:0.26
Consensus pattern (25 bp):
AACTTGATGAAAAACTTGAGAAAAG
Found at i:3476857 original size:12 final size:12
Alignment explanation
Indices: 3476804--3476904 Score: 60
Period size: 12 Copynumber: 7.9 Consensus size: 12
3476794 AAATTTTAGG
*
3476804 AAAAGACTTGAT
1 AAAAAACTTGAT
* *
3476816 GAAAAACTTTA-
1 AAAAAACTTGAT
*
3476827 AAAAGAACTTGCT
1 AAAA-AACTTGAT
**
3476840 GCAAAACTTGAT
1 AAAAAACTTGAT
*
3476852 AAAAAACTTGGT
1 AAAAAACTTGAT
3476864 AATTTAAAACTTGAT
1 AA---AAAACTTGAT
*
3476879 AAAAGAACTAGAT
1 AAAA-AACTTGAT
3476892 GAAAAATACTTGA
1 -AAAAA-ACTTGA
3476905 AGAAAGAAAA
Statistics
Matches: 66, Mismatches: 15, Indels: 14
0.69 0.16 0.15
Matches are distributed among these distances:
11 3 0.05
12 33 0.50
13 10 0.15
14 9 0.14
15 11 0.17
ACGTcount: A:0.50, C:0.10, G:0.14, T:0.26
Consensus pattern (12 bp):
AAAAAACTTGAT
Found at i:3476921 original size:19 final size:19
Alignment explanation
Indices: 3476893--3476930 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
3476883 GAACTAGATG
*
3476893 AAAAATACTTGAA-GAAAGA
1 AAAAACACTT-AATGAAAGA
3476912 AAAAACACTTAATGAAAGA
1 AAAAACACTTAATGAAAGA
3476931 CTTAATTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.63, C:0.08, G:0.13, T:0.16
Consensus pattern (19 bp):
AAAAACACTTAATGAAAGA
Found at i:3478969 original size:22 final size:21
Alignment explanation
Indices: 3478944--3478992 Score: 71
Period size: 22 Copynumber: 2.3 Consensus size: 21
3478934 TATTTTAAAA
* *
3478944 TTAAAAAATTTAAAAAAGTATT
1 TTAAAAAAATTAAAAAA-AATT
3478966 TTAAAAAAATTAAAAAAAATT
1 TTAAAAAAATTAAAAAAAATT
3478987 TTAAAA
1 TTAAAA
3478993 TTAAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 9 0.36
22 16 0.64
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
TTAAAAAAATTAAAAAAAATT
Found at i:3478980 original size:21 final size:22
Alignment explanation
Indices: 3478944--3478992 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
3478934 TATTTTAAAA
* **
3478944 TTAAAAAATTTAAAAAAGTATT
1 TTAAAAAAATTAAAAAAAAATT
3478966 TTAAAAAAATT-AAAAAAAATT
1 TTAAAAAAATTAAAAAAAAATT
3478987 TTAAAA
1 TTAAAA
3478993 TTAAAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
TTAAAAAAATTAAAAAAAAATT
Found at i:3479000 original size:16 final size:16
Alignment explanation
Indices: 3478908--3478958 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 16
3478898 AAATTAAAAC
*
3478908 AAAAATAAAAAATTTT
1 AAAATTAAAAAATTTT
**
3478924 -ATTTTAAAAATATTTT
1 AAAATTAAAAA-ATTTT
3478940 AAAATTAAAAAA-TTT
1 AAAATTAAAAAATTTT
3478955 AAAA
1 AAAA
3478959 AAGTATTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
15 14 0.50
16 6 0.21
17 8 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAAATTAAAAAATTTT
Found at i:3479034 original size:50 final size:49
Alignment explanation
Indices: 3478923--3479035 Score: 145
Period size: 49 Copynumber: 2.2 Consensus size: 49
3478913 TAAAAAATTT
* *
3478923 TATTTTAAAAATATTTTAAAATTAAAAAATTTAAAAAAGTATTTTAAAAA
1 TATTTTAAAAA-ATTTTAAAATTAAAAAAATTAAAAAAATATTTTAAAAA
* ** *
3478973 AATTAAAAAAAATTTTAAAATTAAAAAAATTAAAAAATATATTTTAAAAG
1 TATTTTAAAAAATTTTAAAATTAAAAAAATTAAAAAA-ATATTTTAAAAA
3479023 TATTTTTAAAAAA
1 TA-TTTTAAAAAA
3479036 AAATATTTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
49 25 0.48
50 19 0.37
51 8 0.15
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (49 bp):
TATTTTAAAAAATTTTAAAATTAAAAAAATTAAAAAAATATTTTAAAAA
Found at i:3483240 original size:24 final size:25
Alignment explanation
Indices: 3483208--3483255 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
3483198 TCACCACCAA
3483208 CAAGATTTTGTGA-CATAAATCAAT
1 CAAGATTTTGTGACCATAAATCAAT
*
3483232 CAAGATTTTGTGACCTTAAATCAA
1 CAAGATTTTGTGACCATAAATCAA
3483256 CCAGCCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (25 bp):
CAAGATTTTGTGACCATAAATCAAT
Found at i:3511709 original size:103 final size:103
Alignment explanation
Indices: 3511581--3511947 Score: 544
Period size: 103 Copynumber: 3.6 Consensus size: 103
3511571 TTGCATATAA
** *
3511581 AGGGGTTGCTGTGTGCTGATTCCCCTA-TTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
1 AGGGGTTGCTAAGTGCTGATTCCCCTACCT-ATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
3511645 TTAAATGTGGAAGGGGGTTGCTAAGTGCTGATTCCCCCG
65 TTAAATGTGGAAGGGGGTTGCTAAGTGCTGATTCCCCCG
3511684 AGGGGTTGCTAAGTGCTGATTCCCCTACCTATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
1 AGGGGTTGCTAAGTGCTGATTCCCCTACCTATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
* *
3511749 TAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCTG
66 TAAATGTGGAAGGGGGTTGCTAAGTGCTGATTCCCCCG
* *
3511787 AGGGGTTGCTAAGTGCTGATTCCCCTACCTATTTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AGGGGTTGCTAAGTGCTGATTCCCCTACCTA-TTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
* *
3511852 TGAAATGT-GAAGGGGGTTGCTAAGTGCTGATTCCCCCA
65 TTAAATGTGGAAGGGGGTTGCTAAGTGCTGATTCCCCCG
** ** * *
3511890 AGGGGTTGCTGTGTGCTGATTCCCC-AATTCATTGGTGG-TGCTAAGTGCGGAATCCACC
1 AGGGGTTGCTAAGTGCTGATTCCCCTACCT-ATTGGTGGTTGCTAAGTGCTGATTCCACC
3511948 AACAACGGTT
Statistics
Matches: 244, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
101 18 0.07
102 9 0.04
103 178 0.73
104 39 0.16
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCTACCTATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
TAAATGTGGAAGGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:3511798 original size:27 final size:27
Alignment explanation
Indices: 3511761--3511812 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
3511751 AATGTGAAAG
3511761 GGGGTTGCTAAGTGCTGATTCCCCTGA
1 GGGGTTGCTAAGTGCTGATTCCCCTGA
3511788 GGGGTTGCTAAGTGCTGATTCCCCT
1 GGGGTTGCTAAGTGCTGATTCCCCT
3511813 ACCTATTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.31
Consensus pattern (27 bp):
GGGGTTGCTAAGTGCTGATTCCCCTGA
Found at i:3512209 original size:22 final size:22
Alignment explanation
Indices: 3512167--3512210 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
3512157 ATAAATGGTG
* *
3512167 AAAAATGAATTGGAGGTTGAAT
1 AAAAATGAATTGGAAGCTGAAT
3512189 AAAAATGAAATT-GAAGCTGAAT
1 AAAAATG-AATTGGAAGCTGAAT
3512211 GAGTCTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.50, C:0.02, G:0.23, T:0.25
Consensus pattern (22 bp):
AAAAATGAATTGGAAGCTGAAT
Found at i:3517202 original size:15 final size:15
Alignment explanation
Indices: 3517182--3517211 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3517172 TTAAATTCGG
3517182 TACTTAAATTTTCAA
1 TACTTAAATTTTCAA
3517197 TACTTAAATTTTCAA
1 TACTTAAATTTTCAA
3517212 CCCTTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
TACTTAAATTTTCAA
Found at i:3517217 original size:15 final size:15
Alignment explanation
Indices: 3517183--3517217 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
3517173 TAAATTCGGT
*
3517183 ACTTAAATTTTCAAT
1 ACTTAAATTTTCAAC
3517198 ACTTAAATTTTCAAC
1 ACTTAAATTTTCAAC
*
3517213 CCTTA
1 ACTTA
3517218 TTTTTTATGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (15 bp):
ACTTAAATTTTCAAC
Found at i:3517840 original size:20 final size:20
Alignment explanation
Indices: 3517804--3517845 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
3517794 TAATTTTGGC
* *
3517804 TATAAATATAGATAAATAAA
1 TATAAATATAAAAAAATAAA
*
3517824 TATAAATATAAAAAAATGAA
1 TATAAATATAAAAAAATAAA
3517844 TA
1 TA
3517846 AACGGGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
TATAAATATAAAAAAATAAA
Found at i:3518889 original size:22 final size:23
Alignment explanation
Indices: 3518855--3518899 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
3518845 CTTCGATTTG
* * *
3518855 ATAAGTTCGATAAAGATATAATA
1 ATAAATTCGATAAAAAAATAATA
3518878 ATAAATTC-ATAAAAAAATAATA
1 ATAAATTCGATAAAAAAATAATA
3518900 TTTAAGAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (23 bp):
ATAAATTCGATAAAAAAATAATA
Found at i:3523140 original size:24 final size:25
Alignment explanation
Indices: 3523108--3523155 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
3523098 TCACCACCAA
3523108 CAAGATTTTGTGA-CATAAATCAAT
1 CAAGATTTTGTGACCATAAATCAAT
*
3523132 CAAGATTTTGTGACCTTAAATCAA
1 CAAGATTTTGTGACCATAAATCAA
3523156 CCAGCCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (25 bp):
CAAGATTTTGTGACCATAAATCAAT
Found at i:3526981 original size:17 final size:17
Alignment explanation
Indices: 3526959--3526991 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
3526949 AAAGTGTCCT
3526959 CTCCTACTTCCTTCTTC
1 CTCCTACTTCCTTCTTC
*
3526976 CTCCTACTTTCTTCTT
1 CTCCTACTTCCTTCTT
3526992 TCTTTCTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.42, G:0.00, T:0.52
Consensus pattern (17 bp):
CTCCTACTTCCTTCTTC
Found at i:3528326 original size:10 final size:10
Alignment explanation
Indices: 3528286--3528397 Score: 108
Period size: 10 Copynumber: 11.2 Consensus size: 10
3528276 ACCATTTTTA
3528286 TTTAAAA-AT
1 TTTAAAATAT
3528295 TTTAAAA-A-
1 TTTAAAATAT
*
3528303 TTAAAAAGTAT
1 TTTAAAA-TAT
3528314 TTTAAAATAT
1 TTTAAAATAT
3528324 TTTAAAATAT
1 TTTAAAATAT
* *
3528334 TTTAAATTAAAAA
1 TTT-AA--AATAT
*
3528347 TTAAAAATAT
1 TTTAAAATAT
3528357 TTTAAAATA-
1 TTTAAAATAT
3528366 TTTAAAAGTAT
1 TTTAAAA-TAT
3528377 TTTAAAATAT
1 TTTAAAATAT
3528387 TTT-AAATAT
1 TTTAAAATAT
3528396 TT
1 TT
3528398 AAATTTAAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 16
0.78 0.07 0.14
Matches are distributed among these distances:
8 6 0.07
9 23 0.26
10 36 0.41
11 15 0.17
12 2 0.02
13 5 0.06
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (10 bp):
TTTAAAATAT
Found at i:3528326 original size:43 final size:40
Alignment explanation
Indices: 3528279--3528368 Score: 101
Period size: 43 Copynumber: 2.1 Consensus size: 40
3528269 AGCCCGGACC
3528279 ATTTT-TATTTAAAAATTTTAAAAATTAAAAAGTATTTTAAAAT
1 ATTTTATATTT-AAAA--TTAAAAATTAAAAA-TATTTTAAAAT
*
3528322 ATTTTAAAATATTTTAAATTAAAAATTAAAAATATTTTAAAAT
1 ATTTT---ATATTTAAAATTAAAAATTAAAAATATTTTAAAAT
3528365 ATTT
1 ATTT
3528369 AAAAGTATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
43 20 0.48
44 14 0.33
46 3 0.07
47 5 0.12
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (40 bp):
ATTTTATATTTAAAATTAAAAATTAAAAATATTTTAAAAT
Found at i:3528344 original size:53 final size:50
Alignment explanation
Indices: 3528287--3528438 Score: 164
Period size: 53 Copynumber: 2.9 Consensus size: 50
3528277 CCATTTTTAT
3528287 TTAAAAATTTTAAAAATTAAAAAGTATTTTAAAATATTTTAAAATATTTTAAA
1 TTAAAAA-TTTAAAAATT-AAAAGTA-TTTAAAATATTTTAAAATATTTTAAA
*
3528340 TTAAAAATTAAAAATATTTTAAAA-TATTTAAAAGTATTTTAAAATATTTTAAA
1 TTAAAAATTTAAAA-A--TTAAAAGTATTTAAAA-TATTTTAAAATATTTTAAA
** *
3528393 TATTTAAATTT-AAAATTAAAAGTATGTAAAATATTTATAAATATAT
1 T-TAAAAATTTAAAAATTAAAAGTATTTAAAATATTT-TAAA-ATAT
3528439 ATATTTATTA
Statistics
Matches: 86, Mismatches: 5, Indels: 17
0.80 0.05 0.16
Matches are distributed among these distances:
50 11 0.13
51 12 0.14
52 18 0.21
53 33 0.38
54 10 0.12
55 2 0.02
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (50 bp):
TTAAAAATTTAAAAATTAAAAGTATTTAAAATATTTTAAAATATTTTAAA
Found at i:3528378 original size:43 final size:44
Alignment explanation
Indices: 3528296--3528382 Score: 151
Period size: 43 Copynumber: 2.0 Consensus size: 44
3528286 TTTAAAAATT
3528296 TTAAAAATTAAAAAGTATTTTAAAATATTTTAAAATATTTTAAA
1 TTAAAAATTAAAAAGTATTTTAAAATATTTTAAAATATTTTAAA
3528340 TTAAAAATTAAAAA-TATTTTAAAATA-TTTAAAAGTATTTTAAA
1 TTAAAAATTAAAAAGTATTTTAAAATATTTTAAAA-TATTTTAAA
3528383 ATATTTTAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
42 7 0.17
43 21 0.50
44 14 0.33
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (44 bp):
TTAAAAATTAAAAAGTATTTTAAAATATTTTAAAATATTTTAAA
Found at i:3528412 original size:41 final size:41
Alignment explanation
Indices: 3528367--3528445 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 41
3528357 TTTAAAATAT
* *
3528367 TTAAAAGTATTTTAAAATATTT-TAAATATTTAAATTTAAAA
1 TTAAAAGTA-TGTAAAATATTTATAAATATATAAATTTAAAA
*
3528408 TTAAAAGTATGTAAAATATTTATAAATATATATATTTA
1 TTAAAAGTATGTAAAATATTTATAAATATATAAATTTA
3528446 TTAAATCAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 11 0.32
41 23 0.68
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.46
Consensus pattern (41 bp):
TTAAAAGTATGTAAAATATTTATAAATATATAAATTTAAAA
Found at i:3534186 original size:30 final size:30
Alignment explanation
Indices: 3534145--3534209 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
3534135 ATTTCCGAGC
*
3534145 TTGGGGACAAAAATGTAATTATTCAAAAGT
1 TTGGGGACAAAAATGTAATTATTCAAAACT
* * *
3534175 TTGGGGGCAAAATTGTAATTTTTCAAAACT
1 TTGGGGACAAAAATGTAATTATTCAAAACT
3534205 TTGGG
1 TTGGG
3534210 TGGAGGATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.34
Consensus pattern (30 bp):
TTGGGGACAAAAATGTAATTATTCAAAACT
Found at i:3534578 original size:33 final size:33
Alignment explanation
Indices: 3534541--3534687 Score: 101
Period size: 33 Copynumber: 4.3 Consensus size: 33
3534531 GGGTTGTTGT
3534541 GTGCTGATTCCCCTATTC-ATTGGTGGTTGCTAA
1 GTGCTGATTCCCCTA-TCGATTGGTGGTTGCTAA
** *
3534574 GTGCTGATTCCACCGTATTTTAAATGTGGAAGGGGGTTGCTAA
1 GTGCTGATTCC-CC-TA---TCGAT-T----GGTGGTTGCTAA
3534617 GTGCTGATTCCCC---CGA--GG-GGTTGCTAA
1 GTGCTGATTCCCCTATCGATTGGTGGTTGCTAA
* *
3534644 GTGCTGATTCCCCTACCTATTGGTGGTTGCTAA
1 GTGCTGATTCCCCTATCGATTGGTGGTTGCTAA
3534677 GTGCTGATTCC
1 GTGCTGATTCC
3534688 ACCGTCTTTA
Statistics
Matches: 93, Mismatches: 5, Indels: 32
0.72 0.04 0.25
Matches are distributed among these distances:
27 22 0.24
28 2 0.02
30 2 0.02
32 2 0.02
33 31 0.33
34 2 0.02
35 3 0.03
37 2 0.02
38 2 0.02
39 1 0.01
42 2 0.02
43 22 0.24
ACGTcount: A:0.17, C:0.21, G:0.28, T:0.34
Consensus pattern (33 bp):
GTGCTGATTCCCCTATCGATTGGTGGTTGCTAA
Found at i:3534726 original size:103 final size:104
Alignment explanation
Indices: 3534541--3534764 Score: 332
Period size: 103 Copynumber: 2.2 Consensus size: 104
3534531 GGGTTGTTGT
* *
3534541 GTGCTGATTCCCCTA-TTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGGAA
1 GTGCTGATTCCCCTACCTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTACTTTAAATGTGGAA
*
3534605 GGGGGTTGCTAAGTGCTGATTCCCCCGAG-GGGTTGCTAA
66 AGGGGTTGCTAAGTGCTGATT-CCCCGAGAGGGTTGCTAA
3534644 GTGCTGATTCCCCTACCT-ATTGGTGGTTGCTAAGTGCTGATTCCACCGT-CTTTAAATGT-GAA
1 GTGCTGATTCCCCTACCTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTACTTTAAATGTGGAA
*
3534706 AGGGGTTGCTAAGGTGGCTGATTCCCCGTGAGGGTTGCTAA
66 AGGGGTTGCTAA-GT-GCTGATTCCCCGAGAGGGTTGCTAA
*
3534747 GTGCTGACTTCCCGTACC
1 GTGCTGA-TTCCCCTACC
3534765 ATTTNNNNNN
Statistics
Matches: 111, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
101 14 0.13
102 17 0.15
103 70 0.63
104 10 0.09
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (104 bp):
GTGCTGATTCCCCTACCTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTACTTTAAATGTGGAA
AGGGGTTGCTAAGTGCTGATTCCCCGAGAGGGTTGCTAA
Found at i:3541604 original size:23 final size:21
Alignment explanation
Indices: 3541552--3541604 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 21
3541542 CGAATTTTAA
3541552 AATTTTTTATCATTTTGGATT
1 AATTTTTTATCATTTTGGATT
* * *
3541573 ACTTGTTTTGGTCATTTTGGGTT
1 AATT-TTTT-ATCATTTTGGATT
3541596 AGATTTTTT
1 A-ATTTTTT
3541605 TATGGTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 3 0.12
22 4 0.16
23 16 0.64
24 2 0.08
ACGTcount: A:0.17, C:0.06, G:0.17, T:0.60
Consensus pattern (21 bp):
AATTTTTTATCATTTTGGATT
Found at i:3542849 original size:86 final size:86
Alignment explanation
Indices: 3542704--3542871 Score: 309
Period size: 86 Copynumber: 2.0 Consensus size: 86
3542694 TCATCCATGG
3542704 TGGTCTCTGTTTTGTGAAGTAAACTAGGGGACATTATATAATTGTTTTAGGTGGGGGGATTTGGA
1 TGGTCTCTGTTTTGTGAAGTAAACTAGGGGACATTATATAATTGTTTTAGGTGGGGGGATTTGGA
3542769 CTGTTCTTGGTCAGCCTGTCT
66 CTGTTCTTGGTCAGCCTGTCT
* * *
3542790 TGGTCTTTGTTTTGTGAAGTAAACTAGTGGCCATTATATAATTGTTTTAGGTGGGGGGATTTGGA
1 TGGTCTCTGTTTTGTGAAGTAAACTAGGGGACATTATATAATTGTTTTAGGTGGGGGGATTTGGA
3542855 CTGTTCTTGGTCAGCCT
66 CTGTTCTTGGTCAGCCT
3542872 AAATACAATC
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 79 1.00
ACGTcount: A:0.18, C:0.11, G:0.30, T:0.40
Consensus pattern (86 bp):
TGGTCTCTGTTTTGTGAAGTAAACTAGGGGACATTATATAATTGTTTTAGGTGGGGGGATTTGGA
CTGTTCTTGGTCAGCCTGTCT
Found at i:3545992 original size:49 final size:49
Alignment explanation
Indices: 3545907--3546012 Score: 151
Period size: 49 Copynumber: 2.1 Consensus size: 49
3545897 ATTATTATGT
* * *
3545907 ATGTCTGTTTTATGGTTTATGTTTAGAGTTCGTGGCTG-CCTCTTCTAACA
1 ATGT-TGTTTTATGATTTATGTTTAGAATTCATGGCTGTCC-CTTCTAACA
*
3545957 ATGTTGTTTTATGATTTATGTTTGGAATTCATGGCTGTCCCTTCTAACA
1 ATGTTGTTTTATGATTTATGTTTAGAATTCATGGCTGTCCCTTCTAACA
3546006 ATGTTGT
1 ATGTTGT
3546013 CTTCAAAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
49 45 0.88
50 6 0.12
ACGTcount: A:0.18, C:0.14, G:0.21, T:0.47
Consensus pattern (49 bp):
ATGTTGTTTTATGATTTATGTTTAGAATTCATGGCTGTCCCTTCTAACA
Found at i:3548035 original size:23 final size:23
Alignment explanation
Indices: 3548005--3548048 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
3547995 TAGGTTAATT
3548005 TTGATGAGATTGTATGAAAGTAC
1 TTGATGAGATTGTATGAAAGTAC
3548028 TTGATGAGATTGTATGAAAGT
1 TTGATGAGATTGTATGAAAGT
3548049 GCGTCCAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.27, T:0.36
Consensus pattern (23 bp):
TTGATGAGATTGTATGAAAGTAC
Found at i:3555427 original size:6 final size:6
Alignment explanation
Indices: 3555403--3555446 Score: 61
Period size: 6 Copynumber: 7.0 Consensus size: 6
3555393 TAATTTTGGC
*
3555403 TATAAA TATTAATA AATAAA TATAAA TATAAA TATAAA TATAAA
1 TATAAA TA-TAA-A TATAAA TATAAA TATAAA TATAAA TATAAA
3555447 AAATCAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 26 0.76
7 6 0.18
8 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
TATAAA
Found at i:3558462 original size:57 final size:57
Alignment explanation
Indices: 3558318--3558472 Score: 186
Period size: 56 Copynumber: 2.7 Consensus size: 57
3558308 TGGTATTTTC
* *
3558318 ATCTGACATATGAAGAAATGATTGTCTAAAATGGCTGCTGTTACCAGAACTTATTAT
1 ATCTGACATATGAAGAAATGGTTGTCTAAAATGGCTGTTGTTACCAGAACTTATTAT
* * * * * ** * *
3558375 ATCTGATAT-TTAAGAAATGGTTGTCCAAAATGACCGTTGTTTTCATAATTTATTAT
1 ATCTGACATATGAAGAAATGGTTGTCTAAAATGGCTGTTGTTACCAGAACTTATTAT
* *
3558431 GTCTGACATATGAGGAAATGGTTGTCTAAAATGGCTGTTGTT
1 ATCTGACATATGAAGAAATGGTTGTCTAAAATGGCTGTTGTT
3558473 CGGTTATGGT
Statistics
Matches: 79, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
56 44 0.56
57 35 0.44
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (57 bp):
ATCTGACATATGAAGAAATGGTTGTCTAAAATGGCTGTTGTTACCAGAACTTATTAT
Found at i:3562519 original size:14 final size:14
Alignment explanation
Indices: 3562500--3562526 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
3562490 ATATATACTA
3562500 AATAAAATAATAAT
1 AATAAAATAATAAT
3562514 AATAAAATAATAA
1 AATAAAATAATAA
3562527 AATGTCATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATAAAATAATAAT
Found at i:3565180 original size:25 final size:25
Alignment explanation
Indices: 3565151--3565201 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
3565141 TTAATGAGTT
3565151 AGGTAAGAGGTGTTACATCATCGGA
1 AGGTAAGAGGTGTTACATCATCGGA
3565176 AGGTAAGAGGTGTTACATCATCGGA
1 AGGTAAGAGGTGTTACATCATCGGA
3565201 A
1 A
3565202 CATCCGAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.12, G:0.31, T:0.24
Consensus pattern (25 bp):
AGGTAAGAGGTGTTACATCATCGGA
Found at i:3569296 original size:57 final size:59
Alignment explanation
Indices: 3569160--3569296 Score: 151
Period size: 56 Copynumber: 2.4 Consensus size: 59
3569150 GTTGTTTTCA
* * * *
3569160 TCTGACATATGAAGAAATGATTG-TCTAAAATGGCTGCTGTTTCCAGAACTTATTATGT
1 TCTGACATATGAAGAAATGGTTGTTCTAAAACGACCGCTGTTTCCAGAACTTATTATGT
* * * *
3569218 T-TGACAT-TTAAGAAATGGTTGTTC-AAAACGACCG-TCGTTTTCATAATTTATTAT-T
1 TCTGACATATGAAGAAATGGTTGTTCTAAAACGACCGCT-GTTTCCAGAACTTATTATGT
3569273 TCTGACATATGAAGAAATGGTTGT
1 TCTGACATATGAAGAAATGGTTGT
3569297 CTACAATGGC
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
55 3 0.05
56 40 0.61
57 22 0.33
58 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.38
Consensus pattern (59 bp):
TCTGACATATGAAGAAATGGTTGTTCTAAAACGACCGCTGTTTCCAGAACTTATTATGT
Found at i:3574283 original size:2 final size:2
Alignment explanation
Indices: 3574276--3574300 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3574266 TACAAAAACG
3574276 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
3574301 AACATTGCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3576875 original size:6 final size:6
Alignment explanation
Indices: 3576838--3576885 Score: 53
Period size: 6 Copynumber: 7.7 Consensus size: 6
3576828 AGTACCTGAT
*
3576838 CAGTAA TCAGTAA TCAGTAA C-GATAG CAGTAA CAGTAA CAGTAA CAGT
1 CAGTAA -CAGTAA -CAGTAA CAG-TAA CAGTAA CAGTAA CAGTAA CAGT
3576886 GTTCAACACA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
5 1 0.03
6 22 0.59
7 14 0.38
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.21
Consensus pattern (6 bp):
CAGTAA
Found at i:3576930 original size:45 final size:45
Alignment explanation
Indices: 3576864--3576970 Score: 153
Period size: 45 Copynumber: 2.4 Consensus size: 45
3576854 GTAACGATAG
* *
3576864 CAGTAACAGTAACAGTAACAGTGTTCAACACACAAAGT-GCTGAAT
1 CAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTATC-GAAT
* * *
3576909 CTGTAACAGTAACGGTAACAGTATTCGACACACAAAGTATCGAAT
1 CAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTATCGAAT
3576954 CAGTAACAGTAACAGTA
1 CAGTAACAGTAACAGTA
3576971 GTCGGCACAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 53 0.98
46 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.21
Consensus pattern (45 bp):
CAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTATCGAAT
Found at i:3577480 original size:21 final size:21
Alignment explanation
Indices: 3577419--3577482 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
3577409 CATTACTTCG
* * *
3577419 GTAATTTCACAGTTCAATGCA
1 GTAACTTCACAATTCAATTCA
*
3577440 GTACACTTAACAA-T--ATTCA
1 GTA-ACTTCACAATTCAATTCA
3577459 GTAACTTCACAATTCAATTCA
1 GTAACTTCACAATTCAATTCA
3577480 GTA
1 GTA
3577483 TTCAAAACAA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
18 8 0.24
19 8 0.24
21 12 0.35
22 6 0.18
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (21 bp):
GTAACTTCACAATTCAATTCA
Found at i:3578263 original size:11 final size:9
Alignment explanation
Indices: 3578256--3578306 Score: 61
Period size: 9 Copynumber: 5.8 Consensus size: 9
3578246 GCTTTTGCTG
3578256 TTCTTTTGT
1 TTCTTTTGT
3578265 TTCTTTT-T
1 TTCTTTTGT
3578273 CTTCTTTT-T
1 -TTCTTTTGT
*
3578282 TTCTTTTAT
1 TTCTTTTGT
*
3578291 TTCTTTAGT
1 TTCTTTTGT
3578300 TTCTTTT
1 TTCTTTT
3578307 ATTTACTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
8 8 0.22
9 29 0.78
ACGTcount: A:0.04, C:0.14, G:0.04, T:0.78
Consensus pattern (9 bp):
TTCTTTTGT
Found at i:3578270 original size:9 final size:8
Alignment explanation
Indices: 3578256--3578320 Score: 58
Period size: 9 Copynumber: 7.2 Consensus size: 8
3578246 GCTTTTGCTG
3578256 TTCTTTTGT
1 TTCTTTT-T
3578265 TTCTTTTT
1 TTCTTTTT
3578273 CTTCTTTTT
1 -TTCTTTTT
3578282 TTCTTTTAT
1 TTCTTTT-T
*
3578291 TTCTTTAGT
1 TTCTTT-TT
3578300 TTCTTTTAT
1 TTCTTTT-T
3578309 TTACTTTATT
1 TT-CTTT-TT
3578319 TT
1 TT
3578321 ATTTACTTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
8 8 0.17
9 32 0.67
10 7 0.15
11 1 0.02
ACGTcount: A:0.08, C:0.12, G:0.03, T:0.77
Consensus pattern (8 bp):
TTCTTTTT
Found at i:3578303 original size:26 final size:27
Alignment explanation
Indices: 3578256--3578319 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 27
3578246 GCTTTTGCTG
* *
3578256 TTCTTTTGTTTCTTTTTCTTCTTTT-T
1 TTCTTTTATTTCTTTGTCTTCTTTTAT
3578282 TTCTTTTATTTCTTTAGT-TTCTTTTAT
1 TTCTTTTATTTCTTT-GTCTTCTTTTAT
3578309 TTAC-TTTATTT
1 TT-CTTTTATTT
3578320 TATTTACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
26 21 0.64
27 11 0.33
28 1 0.03
ACGTcount: A:0.08, C:0.12, G:0.03, T:0.77
Consensus pattern (27 bp):
TTCTTTTATTTCTTTGTCTTCTTTTAT
Found at i:3578307 original size:18 final size:18
Alignment explanation
Indices: 3578256--3578316 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
3578246 GCTTTTGCTG
*
3578256 TTCTTTTGTTTCTTTT-T
1 TTCTTTAGTTTCTTTTAT
*
3578273 CTTCTTT-TTTTCTTTTAT
1 -TTCTTTAGTTTCTTTTAT
3578291 TTCTTTAGTTTCTTTTAT
1 TTCTTTAGTTTCTTTTAT
3578309 TTACTTTA
1 TT-CTTTA
3578317 TTTTATTTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
17 14 0.37
18 19 0.50
19 5 0.13
ACGTcount: A:0.08, C:0.13, G:0.03, T:0.75
Consensus pattern (18 bp):
TTCTTTAGTTTCTTTTAT
Found at i:3578741 original size:3 final size:3
Alignment explanation
Indices: 3578733--3578832 Score: 107
Period size: 3 Copynumber: 33.7 Consensus size: 3
3578723 TTACTTTACT
3578733 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** ** * *
3578781 TAA T-A TAA -AA CCA TAA TAA TGGT TAA TAA TTA TAA TAA TTA T-A
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
3578824 TATA TAA TA
1 TA-A TAA TA
3578833 TTTATGTAGA
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
2 6 0.07
3 72 0.88
4 4 0.05
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:3582171 original size:14 final size:14
Alignment explanation
Indices: 3582152--3582182 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
3582142 TCATTCAAAA
3582152 TCATAACAACGAAG
1 TCATAACAACGAAG
3582166 TCATAACAACGAAG
1 TCATAACAACGAAG
3582180 TCA
1 TCA
3582183 AGTCTCATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.23, G:0.13, T:0.16
Consensus pattern (14 bp):
TCATAACAACGAAG
Found at i:3589203 original size:23 final size:23
Alignment explanation
Indices: 3589176--3589222 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
3589166 TTTTGATACC
3589176 TAAACTTTAATTCTATTTATTAT
1 TAAACTTTAATTCTATTTATTAT
3589199 TAAACTTTAATTCTATTTATTAT
1 TAAACTTTAATTCTATTTATTAT
3589222 T
1 T
3589223 GCCATATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (23 bp):
TAAACTTTAATTCTATTTATTAT
Found at i:3591772 original size:15 final size:15
Alignment explanation
Indices: 3591752--3591781 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3591742 TCAAACTCTA
3591752 ATGTGAGAATTGTTG
1 ATGTGAGAATTGTTG
3591767 ATGTGAGAATTGTTG
1 ATGTGAGAATTGTTG
3591782 TCAAGTTCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40
Consensus pattern (15 bp):
ATGTGAGAATTGTTG
Found at i:3601049 original size:29 final size:29
Alignment explanation
Indices: 3600984--3601069 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 29
3600974 AATATATAGT
3600984 AAAAATTCTATTTTAATCCTTTAAAATGA
1 AAAAATTCTATTTTAATCCTTTAAAATGA
3601013 AAACAATTCTA-TTTAATCCCTTTAAATATG-
1 AAA-AATTCTATTTTAAT-CCTTTAAA-ATGA
*
3601043 ATAAATTAC-ATTTTAA-CCTTTCAAAAT
1 AAAAATT-CTATTTTAATCCTTT-AAAAT
3601070 TTTATAATTT
Statistics
Matches: 50, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
28 7 0.14
29 17 0.34
30 23 0.46
31 3 0.06
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (29 bp):
AAAAATTCTATTTTAATCCTTTAAAATGA
Found at i:3607623 original size:15 final size:15
Alignment explanation
Indices: 3607589--3607646 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
3607579 AAAATTCGGT
* *
3607589 ACTTAAATTTTCAAT
1 ACTTAATTTTTCAAC
3607604 ACTTAATTTTTCAAC
1 ACTTAATTTTTCAAC
* * **
3607619 CCTTATTTTTTCTGC
1 ACTTAATTTTTCAAC
*
3607634 ACTTAATCTTTCA
1 ACTTAATTTTTCA
3607647 GTTTATCAAA
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.28, C:0.21, G:0.02, T:0.50
Consensus pattern (15 bp):
ACTTAATTTTTCAAC
Found at i:3617189 original size:56 final size:57
Alignment explanation
Indices: 3617085--3617262 Score: 180
Period size: 57 Copynumber: 3.1 Consensus size: 57
3617075 AAAATGAGTT
* * * * * *
3617085 CTGTTGTTTTCATAATATATTTTGTCTGACATATGAAGAAATGATTGTCTAAAATGG
1 CTGTTGTTTCCAGAATTTATTATATCTGACATATGAAGAAATGGTTGTCTAAAATGG
* * * *
3617142 CTGCTGTTTCCAGAACTTT-TTATATCTGACAT-TTAAGAAATGGTTGTCCAAAACGG
1 CTGTTGTTTCCAGAA-TTTATTATATCTGACATATGAAGAAATGGTTGTCTAAAATGG
* * * * * * *
3617198 CCGTTGTTTTCATAATTTATTATGTCCGACATATGAAGAAATTGTTGCCTAAAATGG
1 CTGTTGTTTCCAGAATTTATTATATCTGACATATGAAGAAATGGTTGTCTAAAATGG
3617255 CTGTTGTT
1 CTGTTGTT
3617263 GGGTTATGGT
Statistics
Matches: 96, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
55 3 0.03
56 42 0.44
57 49 0.51
58 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (57 bp):
CTGTTGTTTCCAGAATTTATTATATCTGACATATGAAGAAATGGTTGTCTAAAATGG
Found at i:3617658 original size:56 final size:57
Alignment explanation
Indices: 3617598--3617711 Score: 149
Period size: 57 Copynumber: 2.0 Consensus size: 57
3617588 TTTCCAGAAC
* * *
3617598 TTATTACGTCTGACAT-TTAAGAAATGGTTGTCCAAAACGAACGTTGTTTTCATAAT
1 TTATTACGTCTAACATATGAAGAAATGGTTGTCCAAAACGAACGTGGTTTTCATAAT
* * * * *
3617654 TTATTATGTCTAACATATGAAGAAATGGTTGTCTAAAATGTATGTGGTTTTCATAAT
1 TTATTACGTCTAACATATGAAGAAATGGTTGTCCAAAACGAACGTGGTTTTCATAAT
3617711 T
1 T
3617712 CATTTCTTTC
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
56 14 0.29
57 35 0.71
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (57 bp):
TTATTACGTCTAACATATGAAGAAATGGTTGTCCAAAACGAACGTGGTTTTCATAAT
Found at i:3617983 original size:49 final size:49
Alignment explanation
Indices: 3617929--3618023 Score: 129
Period size: 49 Copynumber: 1.9 Consensus size: 49
3617919 TATCTGAAAA
*
3617929 TCTAAA-TAAAAAATACAAAATTACGTCGTTTTGATAAATATTTACTTTC
1 TCTAAAGT-AAAAAGACAAAATTACGTCGTTTTGATAAATATTTACTTTC
* * * *
3617978 TCTAAAGTTAAAAGGCAAAATTACGTTGTTTTGCTAAATATTTACT
1 TCTAAAGTAAAAAGACAAAATTACGTCGTTTTGATAAATATTTACT
3618024 CATCAGCCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
49 39 0.98
50 1 0.03
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (49 bp):
TCTAAAGTAAAAAGACAAAATTACGTCGTTTTGATAAATATTTACTTTC
Found at i:3622203 original size:57 final size:55
Alignment explanation
Indices: 3622114--3622308 Score: 165
Period size: 57 Copynumber: 3.6 Consensus size: 55
3622104 GTTGGAAATT
*
3622114 TGAAGAAATGGTTGTCCAAAAGGACTGTTGTTTTCATAATATATTTTGTCTGACATA
1 TGAAGAAATGGTTGTCCAAAAGG-CTGCTGTTTTCATAAT-TATTTTGTCTGACATA
* * * * *
3622171 TGAAGAAATGATTGTCTAAAATGGCTGCTGTTTCCAGAACTTATTATGTCTGACAT-
1 TGAAGAAATGGTTGTCCAAAA-GGCTGCTGTTTTCATAA-TTATTTTGTCTGACATA
* *
3622227 TTAAGAAATGGTTGTCCAAAA--C-GAC----TTCGTAATTTATTATT-TCTGACATA
1 TGAAGAAATGGTTGTCCAAAAGGCTG-CTGTTTTCATAA-TTATT-TTGTCTGACATA
* *
3622277 TGAAGAAATGGTTGTCTAAAATGGCTGTTGTT
1 TGAAGAAATGGTTGTCCAAAA-GGCTGCTGTT
3622309 CGGTTATGGT
Statistics
Matches: 108, Mismatches: 17, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
49 17 0.16
50 20 0.19
52 1 0.01
53 3 0.03
54 1 0.01
56 18 0.17
57 45 0.42
58 3 0.03
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (55 bp):
TGAAGAAATGGTTGTCCAAAAGGCTGCTGTTTTCATAATTATTTTGTCTGACATA
Found at i:3624731 original size:19 final size:20
Alignment explanation
Indices: 3624688--3624734 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
3624678 TATGGATTAT
*
3624688 TATTTTAAGTTAGTCATGTA
1 TATTTTAAGTTAGTCATGAA
* *
3624708 TATTTTAATTTA-TTATGAA
1 TATTTTAAGTTAGTCATGAA
3624727 TATTTTAA
1 TATTTTAA
3624735 ATGTATCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (20 bp):
TATTTTAAGTTAGTCATGAA
Found at i:3624802 original size:49 final size:48
Alignment explanation
Indices: 3624717--3624810 Score: 116
Period size: 49 Copynumber: 1.9 Consensus size: 48
3624707 ATATTTTAAT
* *
3624717 TTATTATGAATATTTTAAATGTATCATACATCATTATTTTTAAATCTA
1 TTATTATGAATATTTTAAATGTATCATACATAATTATTTTAAAATCTA
* * * **
3624765 TTATGTATGCATATTTTAATTGTATTATGTATAATTATTTTAAAAT
1 TTAT-TATGAATATTTTAAATGTATCATACATAATTATTTTAAAAT
3624811 TCATATTTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
48 4 0.11
49 34 0.89
ACGTcount: A:0.36, C:0.05, G:0.06, T:0.52
Consensus pattern (48 bp):
TTATTATGAATATTTTAAATGTATCATACATAATTATTTTAAAATCTA
Found at i:3624803 original size:24 final size:23
Alignment explanation
Indices: 3624717--3624808 Score: 69
Period size: 24 Copynumber: 3.8 Consensus size: 23
3624707 ATATTTTAAT
3624717 TTAT-TATGAATATTTTAAATGTA
1 TTATGTAT-AATATTTTAAATGTA
* ** * *
3624740 TCATACATCATTATTTTTAAATCTA
1 TTATGTAT-AATA-TTTTAAATGTA
* *
3624765 TTATGTATGCATATTTTAATTGTA
1 TTATGTAT-AATATTTTAAATGTA
3624789 TTATGTATAATTATTTTAAA
1 TTATGTATAA-TATTTTAAA
3624809 ATTCATATTT
Statistics
Matches: 51, Mismatches: 15, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
23 4 0.08
24 30 0.59
25 17 0.33
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (23 bp):
TTATGTATAATATTTTAAATGTA
Found at i:3631363 original size:23 final size:21
Alignment explanation
Indices: 3631335--3631380 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
3631325 TTCGTCGATT
* *
3631335 TAATAAGTTCGATAAAGATATAA
1 TAATAAATTC-ATAAA-AAATAA
3631358 TAATAAATTCATAAAAAATAA
1 TAATAAATTCATAAAAAATAA
3631379 TA
1 TA
3631381 TTTAAGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
22 5 0.24
23 9 0.43
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (21 bp):
TAATAAATTCATAAAAAATAA
Found at i:3633409 original size:57 final size:55
Alignment explanation
Indices: 3633256--3633409 Score: 148
Period size: 56 Copynumber: 2.7 Consensus size: 55
3633246 TGGTGTTTTC
* *
3633256 ATCTGACATATCAAGAAATGATTGTCTAAAATGGCTGCTGTTTCCAGAACTTATTAT
1 ATCTGACATA-CAAGAAATGGTTGTCTAAAAT-GCTGTTGTTTCCAGAACTTATTAT
* ** * * * * *
3633313 ATCTGATATTTAAGAAATGGTTGTCCT-TAATGACCGTTGTTTTCATAATTTATTAT
1 ATCTGACATACAAGAAATGGTTGT-CTAAAATG-CTGTTGTTTCCAGAACTTATTAT
*
3633369 GTCTGACATACGAAGAAATGGTTGTCTAAAATAGCTGTTGT
1 ATCTGACATAC-AAGAAATGGTTGTCTAAAAT-GCTGTTGT
3633410 ATTATGTGTG
Statistics
Matches: 76, Mismatches: 16, Indels: 10
0.75 0.16 0.10
Matches are distributed among these distances:
55 1 0.01
56 42 0.55
57 32 0.42
58 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (55 bp):
ATCTGACATACAAGAAATGGTTGTCTAAAATGCTGTTGTTTCCAGAACTTATTAT
Found at i:3635674 original size:57 final size:56
Alignment explanation
Indices: 3635595--3635790 Score: 208
Period size: 57 Copynumber: 3.6 Consensus size: 56
3635585 TGTTGGATAA
* *
3635595 ATGAAGAAATGGTTGTCCAAAATGACTGTTGTTTTCATAATATATTTTGTCTGACAT
1 ATGAAGAAATGGTTGTCCAAAATGGCTGTTGTTTTCATAAT-TATTATGTCTGACAT
* * * * * *
3635652 ATGAAGATATGATTGTCTAAAATGGCTGCTGTTTCCAGAACTTATTATGTCTGACAT
1 ATGAAGAAATGGTTGTCCAAAATGGCTGTTGTTTTCATAA-TTATTATGTCTGACAT
* * * *
3635709 -TTAAGAAATGGTTGTCCAAAACGGCCGTTGTTTTCAT-A--A-T-T-TCCGACAT
1 ATGAAGAAATGGTTGTCCAAAATGGCTGTTGTTTTCATAATTATTATGTCTGACAT
*
3635758 ATGAAGAAATGGTTGTCTAAAATGGCTGTTGTT
1 ATGAAGAAATGGTTGTCCAAAATGGCTGTTGTT
3635791 CGGTTATGGT
Statistics
Matches: 115, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
49 7 0.06
50 29 0.25
51 1 0.01
52 1 0.01
55 1 0.01
56 28 0.24
57 47 0.41
58 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (56 bp):
ATGAAGAAATGGTTGTCCAAAATGGCTGTTGTTTTCATAATTATTATGTCTGACAT
Found at i:3635985 original size:12 final size:12
Alignment explanation
Indices: 3635968--3635999 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
3635958 TTGGTTTAAT
3635968 TCGAATATGAAC
1 TCGAATATGAAC
3635980 TCGAATATGAAC
1 TCGAATATGAAC
3635992 TCGAATAT
1 TCGAATAT
3636000 TACACAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TCGAATATGAAC
Found at i:3644220 original size:19 final size:19
Alignment explanation
Indices: 3644032--3644406 Score: 112
Period size: 18 Copynumber: 20.2 Consensus size: 19
3644022 ACAATAATAA
*
3644032 TTTTTGAAAACACGAAGA-
1 TTTTTGAAAACACGAAAAT
*
3644050 TTTTTG-AAACACGAAATT
1 TTTTTGAAAACACGAAAAT
3644068 TTTTTG---ACACGAAAA-
1 TTTTTGAAAACACGAAAAT
*
3644083 ATTTTGAAAACACGAAAA-
1 TTTTTGAAAACACGAAAAT
* ** *
3644101 -TTTCGAAAACTTG-AATT
1 TTTTTGAAAACACGAAAAT
** * ***
3644118 TTTTTTTAAACATGATTTT
1 TTTTTGAAAACACGAAAAT
* *
3644137 TTTTTAAAAAACACGAGAAT
1 TTTTT-GAAAACACGAAAAT
*
3644157 TTTTTGAAAACACGAAAGCACGAAA
1 TTTTTGAAAACACG--A--A--AAT
* **
3644182 ATTTTGAAAACACGGGAAT
1 TTTTTGAAAACACGAAAAT
*
3644201 TTTTTTAAAACACGAAAA-
1 TTTTTGAAAACACGAAAAT
* *
3644219 TTTTTG-AAACATGAGAAT
1 TTTTTGAAAACACGAAAAT
3644237 TTTTTG---ACACGAAAA-
1 TTTTTGAAAACACGAAAAT
* * *
3644252 -TTTCGAAAACATG-AATT
1 TTTTTGAAAACACGAAAAT
* * *
3644269 TTTTTTAAAATACG-AATT
1 TTTTTGAAAACACGAAAAT
* *
3644287 TTTTTAAAAAACATGAAAACAT
1 TTTTT-GAAAACACG-AAA-AT
*
3644309 GAAAATTTTGAAAACACGAAAA-
1 ----TTTTTGAAAACACGAAAAT
* *
3644331 TTTTTG-AAACATGAGAAT
1 TTTTTGAAAACACGAAAAT
*
3644349 TTTTTGAAAACACGAAAAAA
1 TTTTTGAAAACACG-AAAAT
* **
3644369 TTTTT--AAACATGGGAA-
1 TTTTTGAAAACACGAAAAT
*
3644385 TTTTTGAAAACACGGAAAT
1 TTTTTGAAAACACGAAAAT
3644404 TTT
1 TTT
3644407 AAAACATGGA
Statistics
Matches: 262, Mismatches: 61, Indels: 67
0.67 0.16 0.17
Matches are distributed among these distances:
14 4 0.02
15 5 0.02
16 24 0.09
17 43 0.16
18 85 0.32
19 46 0.18
20 21 0.08
21 3 0.01
22 1 0.00
23 1 0.00
24 3 0.01
25 22 0.08
26 4 0.02
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (19 bp):
TTTTTGAAAACACGAAAAT
Found at i:3644361 original size:36 final size:34
Alignment explanation
Indices: 3644303--3644433 Score: 149
Period size: 36 Copynumber: 3.8 Consensus size: 34
3644293 AAAAACATGA
*
3644303 AAACATGA-AAATTTTGAAAACACGAAAATTTTT
1 AAACATGAGAATTTTTGAAAACACGAAAATTTTT
3644336 GAAACATGAGAATTTTTTGAAAACACGAAAAAATTTTT
1 -AAACATGAGAA-TTTTTGAAAACACG--AAAATTTTT
* * *
3644374 AAACATGGGAATTTTTGAAAACACGGAAATTTTA
1 AAACATGAGAATTTTTGAAAACACGAAAATTTTT
** *
3644408 AAACATG-GAAACTTTAAAAACACGAA
1 AAACATGAGAATTTTTGAAAACACGAA
3644434 TTTTTTTTTA
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
33 15 0.18
34 22 0.26
35 2 0.02
36 27 0.32
37 10 0.12
38 9 0.11
ACGTcount: A:0.50, C:0.10, G:0.13, T:0.27
Consensus pattern (34 bp):
AAACATGAGAATTTTTGAAAACACGAAAATTTTT
Found at i:3644388 original size:16 final size:16
Alignment explanation
Indices: 3644366--3644418 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
3644356 AAACACGAAA
3644366 AAATTTTTAAACATGG
1 AAATTTTTAAACATGG
* *
3644382 GAATTTTTGAAAACACGG
1 AAATTTTT--AAACATGG
*
3644400 AAATTTTAAAACATGG
1 AAATTTTTAAACATGG
3644416 AAA
1 AAA
3644419 CTTTAAAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
16 17 0.57
18 13 0.43
ACGTcount: A:0.47, C:0.08, G:0.15, T:0.30
Consensus pattern (16 bp):
AAATTTTTAAACATGG
Found at i:3644429 original size:17 final size:16
Alignment explanation
Indices: 3644391--3644431 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
3644381 GGAATTTTTG
*
3644391 AAAACACGGAAATTTT
1 AAAACACGGAAATTTA
*
3644407 AAAACATGGAAACTTTA
1 AAAACACGGAAA-TTTA
3644424 AAAACACG
1 AAAACACG
3644432 AATTTTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.54, C:0.15, G:0.12, T:0.20
Consensus pattern (16 bp):
AAAACACGGAAATTTA
Found at i:3644448 original size:19 final size:21
Alignment explanation
Indices: 3644424--3644463 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
3644414 GGAAACTTTA
*
3644424 AAAACACGA-ATTTTT-TTTT
1 AAAACACAAGATTTTTATTTT
3644443 AAAACACAAGATTTTTATTTT
1 AAAACACAAGATTTTTATTTT
3644464 TTTATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 6 0.33
21 4 0.22
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (21 bp):
AAAACACAAGATTTTTATTTT
Found at i:3644609 original size:20 final size:20
Alignment explanation
Indices: 3644580--3644617 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
3644570 GGGATTCTAA
3644580 TAAAACACGAGAATTTTTAT
1 TAAAACACGAGAATTTTTAT
* *
3644600 TAAAATACGAGGATTTTT
1 TAAAACACGAGAATTTTT
3644618 GAATATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (20 bp):
TAAAACACGAGAATTTTTAT
Found at i:3645076 original size:14 final size:14
Alignment explanation
Indices: 3645059--3645099 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
3645049 TTACTTTTTT
3645059 CTCTCTTTTTCTTC
1 CTCTCTTTTTCTTC
*
3645073 CTCTTTTTTTCTTC
1 CTCTCTTTTTCTTC
* *
3645087 TTCTCTTCTTCTT
1 CTCTCTTTTTCTT
3645100 GTCTCAAAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
CTCTCTTTTTCTTC
Found at i:3645757 original size:58 final size:58
Alignment explanation
Indices: 3645633--3645803 Score: 147
Period size: 58 Copynumber: 2.9 Consensus size: 58
3645623 CAAAGCTTCT
* * * *
3645633 GGGG-CAAAAGTGT-AATTTTAGCAAAA-ATATGGGCCAAAATGTAATTTCTTGAGAGTTTA
1 GGGGTCAAAA-TGTAAATTTTAG-AAAAGTTAAGGGTCAAAATGTAA-TT-TTGAAAGTTTA
* *
3645692 GGGGTC-AAA-GTGAATTTTTGAGAAAGTCTAAGGGTCAAAATGTAATTTTAGAAAGTTT-
1 GGGGTCAAAATGTAAATTTTAGA-AAAGT-TAAGGGTCAAAATGTAATTTT-GAAAGTTTA
* * *
3645750 TGGGTCAAAATGTAAATTTTAGAAAAGTTTAGGGTTAAAATGTAAATTTTGAAA
1 GGGGTCAAAATGTAAATTTTAGAAAAGTTAAGGGTCAAAATGT-AATTTTGAAA
3645804 AGTACAGGGG
Statistics
Matches: 93, Mismatches: 10, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
57 3 0.03
58 34 0.37
59 30 0.32
60 26 0.28
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.33
Consensus pattern (58 bp):
GGGGTCAAAATGTAAATTTTAGAAAAGTTAAGGGTCAAAATGTAATTTTGAAAGTTTA
Found at i:3645767 original size:29 final size:29
Alignment explanation
Indices: 3645667--3645803 Score: 138
Period size: 30 Copynumber: 4.7 Consensus size: 29
3645657 AAATATGGGC
* *
3645667 CAAAATGT-AATTTCTTGAGAGTTTAGGGGT
1 CAAAATGTAAATTT-TAGAAAGTTTA-GGGT
* * *
3645697 CAAAGTG-AATTTTTGAGAAAGTCTAAGGGT
1 CAAAATGTAAATTTT-AGAAAGT-TTAGGGT
*
3645727 CAAAATGT-AATTTTAGAAAGTTTTGGGT
1 CAAAATGTAAATTTTAGAAAGTTTAGGGT
3645755 CAAAATGTAAATTTTAGAAAAGTTTAGGGT
1 CAAAATGTAAATTTTAG-AAAGTTTAGGGT
*
3645785 TAAAATGTAAATTTT-GAAA
1 CAAAATGTAAATTTTAGAAA
3645804 AGTACAGGGG
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
28 16 0.18
29 17 0.19
30 55 0.61
31 2 0.02
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35
Consensus pattern (29 bp):
CAAAATGTAAATTTTAGAAAGTTTAGGGT
Found at i:3645820 original size:29 final size:30
Alignment explanation
Indices: 3645722--3645818 Score: 101
Period size: 30 Copynumber: 3.3 Consensus size: 30
3645712 AGAAAGTCTA
* **
3645722 AGGGTCAAAATGT-AATTTTAG-AAAGTTT
1 AGGGTTAAAATGTAAATTTTAGAAAAGTAC
* * **
3645750 TGGGTCAAAATGTAAATTTTAGAAAAGTTT
1 AGGGTTAAAATGTAAATTTTAGAAAAGTAC
3645780 AGGGTTAAAATGTAAATTTT-GAAAAGTAC
1 AGGGTTAAAATGTAAATTTTAGAAAAGTAC
3645809 AGGGGTTAAA
1 A-GGGTTAAA
3645819 TGAAAAAATA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
28 12 0.20
29 16 0.26
30 33 0.54
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (30 bp):
AGGGTTAAAATGTAAATTTTAGAAAAGTAC
Found at i:3646188 original size:74 final size:74
Alignment explanation
Indices: 3646014--3646299 Score: 337
Period size: 75 Copynumber: 3.8 Consensus size: 74
3646004 CTCGGCGTGC
* * * * * *
3646014 GACCCGAGACTCAACTCACCTCTTG-AATTATGAGTTGA-TCTTCGAAAAACAAAAATCG-AAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAA-TATGAGTTGATTTTTTGAAAAACATAAATTGAAAAA
3646076 TACCTCGACATGT
65 TACCTCG-C--GT
* *
3646089 GCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACATGAATTGAAAAAT
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAAT
3646153 ACCTCTGCGT
66 ACCTC-GCGT
*
3646163 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTAAAAGA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAA-TT-GAA-A
*
3646228 AATACCTCGGCAT
63 AATACCTC-GCGT
** *
3646241 GGTCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATT
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACATAAATT
3646300 NNNNNNNNNN
Statistics
Matches: 187, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
74 39 0.21
75 63 0.34
76 15 0.08
77 3 0.02
78 49 0.26
79 18 0.10
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (74 bp):
GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAAT
ACCTCGCGT
Found at i:3647376 original size:18 final size:16
Alignment explanation
Indices: 3647349--3647414 Score: 69
Period size: 18 Copynumber: 3.8 Consensus size: 16
3647339 TTCATCTTGA
* *
3647349 TTTTTCTTTTTCTTTT
1 TTTTTTTTTTTGTTTT
3647365 CTTTGTTTTTTTTGTTTT
1 -TTT-TTTTTTTTGTTTT
3647383 TATTTTTGTTTTTGTTTT
1 T-TTTTT-TTTTTGTTTT
3647401 TTTATTTTTTTTGT
1 TTT-TTTTTTTTGT
3647415 CCCTTTTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
17 16 0.37
18 27 0.63
ACGTcount: A:0.03, C:0.05, G:0.08, T:0.85
Consensus pattern (16 bp):
TTTTTTTTTTTGTTTT
Found at i:3647402 original size:20 final size:21
Alignment explanation
Indices: 3647366--3647409 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
3647356 TTTTCTTTTC
*
3647366 TTTGTTTTTTTTGTTTTTATT
1 TTTGTTTTTGTTGTTTTTATT
3647387 TTTGTTTTTGTT-TTTTTATT
1 TTTGTTTTTGTTGTTTTTATT
3647407 TTT
1 TTT
3647410 TTTGTCCCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.05, C:0.00, G:0.09, T:0.86
Consensus pattern (21 bp):
TTTGTTTTTGTTGTTTTTATT
Found at i:3647408 original size:6 final size:6
Alignment explanation
Indices: 3647373--3647414 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
3647363 TTCTTTGTTT
*
3647373 TTTTTG TTTTTA TTTTTG TTTTTG TTTTT- TTATTT- TTTTTG T
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TT-TTTG TTTTTG T
3647415 CCCTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.05, C:0.00, G:0.10, T:0.86
Consensus pattern (6 bp):
TTTTTG
Found at i:3647424 original size:35 final size:36
Alignment explanation
Indices: 3647348--3647424 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 36
3647338 TTTCATCTTG
* **
3647348 ATTTTTCTTTTTCTTTTCTTTGTTTTTTTTGTTTTT
1 ATTTTTCTTTTTCTTTTCTTTATTTTTTTTGTCCTT
* *
3647384 ATTTTTGTTTTTGTTTT-TTTATTTTTTTTGTCCCTT
1 ATTTTTCTTTTTCTTTTCTTTATTTTTTTTGT-CCTT
3647420 -TTTTT
1 ATTTTT
3647425 AAGCATAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
35 18 0.51
36 17 0.49
ACGTcount: A:0.04, C:0.08, G:0.06, T:0.82
Consensus pattern (36 bp):
ATTTTTCTTTTTCTTTTCTTTATTTTTTTTGTCCTT
Found at i:3653266 original size:18 final size:18
Alignment explanation
Indices: 3653212--3653270 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
3653202 ACAATAATAA
**
3653212 TTTTTGAAAACACGAAGA
1 TTTTTGAAAACACGAATT
3653230 TTTTTG-AAACACGAAATT
1 TTTTTGAAAACACG-AATT
*
3653248 TTTTTGAAAACACGGATT
1 TTTTTGAAAACACGAATT
3653266 TTTTT
1 TTTTT
3653271 TTGAAAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 7 0.19
18 22 0.61
19 7 0.19
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.41
Consensus pattern (18 bp):
TTTTTGAAAACACGAATT
Found at i:3653267 original size:17 final size:18
Alignment explanation
Indices: 3653212--3653269 Score: 68
Period size: 17 Copynumber: 3.3 Consensus size: 18
3653202 ACAATAATAA
3653212 TTTTTGAAAACACGAAGA-
1 TTTTTGAAAACACG-AGAT
*
3653230 TTTTTG-AAACACGAAATT
1 TTTTTGAAAACACGAGA-T
3653248 TTTTTGAAAACACG-GAT
1 TTTTTGAAAACACGAGAT
3653265 TTTTT
1 TTTTT
3653270 TTTGAAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
16 2 0.06
17 13 0.37
18 13 0.37
19 7 0.20
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (18 bp):
TTTTTGAAAACACGAGAT
Found at i:3653270 original size:36 final size:38
Alignment explanation
Indices: 3653194--3653268 Score: 104
Period size: 36 Copynumber: 2.1 Consensus size: 38
3653184 ACACGAGAAC
3653194 TTTGAAACACAATAATAATTTTTGAAAACACGAAGATT
1 TTTGAAACACAATAATAATTTTTGAAAACACGAAGATT
* *
3653232 TTTGAAACACGA-AAT-TTTTTTGAAAACACG--GATT
1 TTTGAAACACAATAATAATTTTTGAAAACACGAAGATT
3653266 TTT
1 TTT
3653269 TTTTGAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 7 0.20
36 14 0.40
37 3 0.09
38 11 0.31
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (38 bp):
TTTGAAACACAATAATAATTTTTGAAAACACGAAGATT
Found at i:3653289 original size:20 final size:20
Alignment explanation
Indices: 3653230--3653289 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
3653220 AACACGAAGA
*
3653230 TTTTTG-AAAC-ACGAAATT
1 TTTTTGAAAACAAGGAAATT
* **
3653248 TTTTTGAAAACACGGATTTT
1 TTTTTGAAAACAAGGAAATT
*
3653268 TTTTTGAAAATAAGGAAATT
1 TTTTTGAAAACAAGGAAATT
3653288 TT
1 TT
3653290 CGATACATGA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
18 6 0.19
19 4 0.12
20 22 0.69
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (20 bp):
TTTTTGAAAACAAGGAAATT
Found at i:3653336 original size:17 final size:18
Alignment explanation
Indices: 3653310--3653346 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
3653300 GAATTTTTTG
*
3653310 ACACGAAAAATTTTGAAA
1 ACACGAAAAATTTCGAAA
3653328 ACACG-AAAATTTCGAAA
1 ACACGAAAAATTTCGAAA
3653345 AC
1 AC
3653347 TTGAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.54, C:0.16, G:0.11, T:0.19
Consensus pattern (18 bp):
ACACGAAAAATTTCGAAA
Found at i:3653376 original size:19 final size:18
Alignment explanation
Indices: 3653343--3653381 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
3653333 AAAATTTCGA
*
3653343 AAACTTGAATTTTTTTTT
1 AAACATGAATTTTTTTTT
3653361 AAACATGAATTTTTTTTT
1 AAACATGAATTTTTTTTT
3653379 AAA
1 AAA
3653382 AAACACAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (18 bp):
AAACATGAATTTTTTTTT
Found at i:3653403 original size:19 final size:19
Alignment explanation
Indices: 3653381--3653480 Score: 53
Period size: 19 Copynumber: 5.1 Consensus size: 19
3653371 TTTTTTTTAA
3653381 AAAACACAAGAATTTTTTG
1 AAAACACAAGAATTTTTTG
**
3653400 AAAACACGAAAGCATGAAAATTTTG
1 AAAACAC---A--A-GAATTTTTTG
** *
3653425 AAAACACGGGAATTTTTTT
1 AAAACACAAGAATTTTTTG
3653444 AAAACACGAA-AA-TTTTTG
1 AAAACAC-AAGAATTTTTTG
**
3653462 -AAACATGAGAATTTTTTG
1 AAAACACAAGAATTTTTTG
3653480 A
1 A
3653481 CACGAAAATT
Statistics
Matches: 59, Mismatches: 12, Indels: 20
0.65 0.13 0.22
Matches are distributed among these distances:
16 1 0.02
17 7 0.12
18 11 0.19
19 23 0.39
22 1 0.02
24 1 0.02
25 15 0.25
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.30
Consensus pattern (19 bp):
AAAACACAAGAATTTTTTG
Done.