Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 121 of 208
Found at i:36988673 original size:37 final size:37
Alignment explanation
Indices: 36988603--36988769 Score: 250
Period size: 37 Copynumber: 4.5 Consensus size: 37
36988593 AAGACTTATA
* *
36988603 TTTTAATTATGT-GTTAATTC-AAGACTTATGTAATGT
1 TTTTAATTATGTAG-TGATTCAAAGACTTATGTAATAT
*
36988639 TTTTAATTATGTACTGATTCAAAGACTTATGTAATATT
1 TTTTAATTATGTAGTGATTCAAAGACTTATGTAATA-T
36988677 TTTTAATTATGTAGTGATTCAAAGACTTAAT-TAATAT
1 TTTTAATTATGTAGTGATTCAAAGACTT-ATGTAATAT
*
36988714 TTTTAATTATGTAGTGATTCAAAGATTTATGTAATAT
1 TTTTAATTATGTAGTGATTCAAAGACTTATGTAATAT
36988751 TTTTAATTATGTAGTGATT
1 TTTTAATTATGTAGTGATT
36988770 TAATTCAGGT
Statistics
Matches: 121, Mismatches: 5, Indels: 9
0.90 0.04 0.07
Matches are distributed among these distances:
36 19 0.16
37 67 0.55
38 33 0.27
39 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.13, T:0.49
Consensus pattern (37 bp):
TTTTAATTATGTAGTGATTCAAAGACTTATGTAATAT
Found at i:36988757 original size:74 final size:74
Alignment explanation
Indices: 36988603--36988769 Score: 250
Period size: 75 Copynumber: 2.3 Consensus size: 74
36988593 AAGACTTATA
* *
36988603 TTTTAATTATGT-GTTAATTCAAGACTTATGTAATGTTTTTAATTATGTACTGATTCAAAGACTT
1 TTTTAATTATGTAG-TGATTCAAGACTTATGTAATATTTTTAATTATGTACTGATTCAAAGACTT
36988667 ATGTAATATT
65 ATGTAATATT
* *
36988677 TTTTAATTATGTAGTGATTCAAAGACTTAAT-TAATATTTTTAATTATGTAGTGATTCAAAGATT
1 TTTTAATTATGTAGTGATTC-AAGACTT-ATGTAATATTTTTAATTATGTACTGATTCAAAGACT
36988741 TATGTAATA-T
64 TATGTAATATT
36988751 TTTTAATTATGTAGTGATT
1 TTTTAATTATGTAGTGATT
36988770 TAATTCAGGT
Statistics
Matches: 86, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
74 37 0.43
75 47 0.55
76 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.13, T:0.49
Consensus pattern (74 bp):
TTTTAATTATGTAGTGATTCAAGACTTATGTAATATTTTTAATTATGTACTGATTCAAAGACTTA
TGTAATATT
Found at i:36988796 original size:9 final size:9
Alignment explanation
Indices: 36988770--36988848 Score: 86
Period size: 9 Copynumber: 8.6 Consensus size: 9
36988760 TGTAGTGATT
*
36988770 TAATTCAGG
1 TAATTCGGG
36988779 TAATTTTCGGG
1 TAA--TTCGGG
36988790 TAATTCGGG
1 TAATTCGGG
*
36988799 TAATTTGGG
1 TAATTCGGG
*
36988808 TAAATCGGG
1 TAATTCGGG
*
36988817 TAATTCTGG
1 TAATTCGGG
*
36988826 TAATTAGGG
1 TAATTCGGG
*
36988835 TATTTCGGG
1 TAATTCGGG
36988844 TAATT
1 TAATT
36988849 TTTAACCAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
9 49 0.86
11 8 0.14
ACGTcount: A:0.25, C:0.08, G:0.28, T:0.39
Consensus pattern (9 bp):
TAATTCGGG
Found at i:36989847 original size:42 final size:42
Alignment explanation
Indices: 36989798--36990025 Score: 268
Period size: 42 Copynumber: 5.5 Consensus size: 42
36989788 TTAGCGCCTC
* *
36989798 GCAGGCTTATTGCCAGTGAAACAATATCAGACTTTACGTCTA
1 GCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTA
* * *
36989840 GTAGGCTTAATGCCGGTGAAATAATTTCAGACTTTACGTCTA
1 GCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTA
36989882 GCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTA
1 GCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTA
* * * *
36989924 GCAGGCTTAATGTCGGTGAAAC-ATTTCAGACTATATGTCTA
1 GCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTA
* * * * *
36989965 GCAGGC-TAAGTGCCGGTG-TACTGA-ATCAGGCTTTAAGCCTA
1 GCAGGCTTAA-TGCCGGTGAAAC-AATATCAGACTTTACGTCTA
36990006 GCAGGC-TAAGTGCCGGTGAA
1 GCAGGCTTAA-TGCCGGTGAA
36990026 TCTGTTTAAA
Statistics
Matches: 162, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
40 5 0.03
41 59 0.36
42 98 0.60
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (42 bp):
GCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTA
Found at i:36992002 original size:17 final size:16
Alignment explanation
Indices: 36991975--36992021 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 16
36991965 TCCAAGTCAA
36991975 ATAA-AATAAATAAAT
1 ATAAGAATAAATAAAT
36991990 AACTAAG-ATAAATAAAT
1 -A-TAAGAATAAATAAAT
36992007 ATAAGAATAAATAAA
1 ATAAGAATAAATAAA
36992022 AGATTGGAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.14
16 11 0.39
17 13 0.46
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.23
Consensus pattern (16 bp):
ATAAGAATAAATAAAT
Found at i:36993010 original size:23 final size:23
Alignment explanation
Indices: 36992980--36993028 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
36992970 CATGAGCCCG
36992980 AAGTTGGTCCTTAAGACTCATAT
1 AAGTTGGTCCTTAAGACTCATAT
36993003 AAGTTGGTCCTTAAGACTCATAT
1 AAGTTGGTCCTTAAGACTCATAT
36993026 AAG
1 AAG
36993029 AAAATCTCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (23 bp):
AAGTTGGTCCTTAAGACTCATAT
Found at i:36993073 original size:13 final size:13
Alignment explanation
Indices: 36993055--36993079 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36993045 AAAGTATAAA
36993055 AAATAAAGAAAAG
1 AAATAAAGAAAAG
36993068 AAATAAAGAAAA
1 AAATAAAGAAAA
36993080 AATTTGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (13 bp):
AAATAAAGAAAAG
Found at i:36995244 original size:13 final size:13
Alignment explanation
Indices: 36995226--36995291 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
36995216 AGTTTAGCAT
36995226 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
36995239 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
** *
36995252 TGCAGTGGAAAAG
1 TGCTTTTGAAAAG
*
36995265 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
36995278 TACTTTTGAAAAG
1 TGCTTTTGAAAAG
36995291 T
1 T
36995292 TTGGTTTAAG
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:36999707 original size:25 final size:25
Alignment explanation
Indices: 36999679--36999737 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
36999669 CAACTCGAGA
* *
36999679 GAGCTTACCAATATTCAGTTCGTAT
1 GAGCTTACCAATACTCAGCTCGTAT
**
36999704 GAGCTTACCTTTACTCAGCTCGTAT
1 GAGCTTACCAATACTCAGCTCGTAT
36999729 GAGCTTACC
1 GAGCTTACC
36999738 GATTACAGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (25 bp):
GAGCTTACCAATACTCAGCTCGTAT
Found at i:37001274 original size:15 final size:15
Alignment explanation
Indices: 37001254--37001286 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
37001244 ATTGGTTGAG
37001254 TGTGGTTATACTATA
1 TGTGGTTATACTATA
37001269 TGTGGTTATACTATA
1 TGTGGTTATACTATA
37001284 TGT
1 TGT
37001287 ATAAAGCTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.21, T:0.48
Consensus pattern (15 bp):
TGTGGTTATACTATA
Found at i:37006841 original size:23 final size:21
Alignment explanation
Indices: 37006815--37006860 Score: 74
Period size: 23 Copynumber: 2.1 Consensus size: 21
37006805 TTCAAAACGG
37006815 TACTTAATCCCTAAACACTTAAA
1 TACTTAATCCCT-AA-ACTTAAA
37006838 TACTTAATCCCTAAACTTAAA
1 TACTTAATCCCTAAACTTAAA
37006859 TA
1 TA
37006861 TTGTTGTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 9 0.39
22 2 0.09
23 12 0.52
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (21 bp):
TACTTAATCCCTAAACTTAAA
Found at i:37007095 original size:6 final size:6
Alignment explanation
Indices: 37007084--37007109 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
37007074 GATCATTTAG
37007084 AAAGAA AAAGAA AAAGAA AAAGAA AA
1 AAAGAA AAAGAA AAAGAA AAAGAA AA
37007110 GCTTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:37009875 original size:3 final size:3
Alignment explanation
Indices: 37009869--37009912 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
37009859 AGTAATAATA
37009869 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
37009913 ACTTTAGCTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:37011897 original size:23 final size:23
Alignment explanation
Indices: 37011871--37011923 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
37011861 ATAAGTGCCA
*
37011871 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAACCGAAGCTAC
*
37011894 CACTGATATGTAACCGATGCTAC
1 CACTGATATGTAACCGAAGCTAC
37011917 CACTGAT
1 CACTGAT
37011924 CAATAACACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAACCGAAGCTAC
Found at i:37013870 original size:31 final size:32
Alignment explanation
Indices: 37013809--37013882 Score: 114
Period size: 31 Copynumber: 2.3 Consensus size: 32
37013799 GTTATAACTT
**
37013809 TTAGAGATTGATTAATATAAATTCTTGAAGAAA
1 TTAGA-ATTGATTAATATAAAACCTTGAAGAAA
37013842 TTAGAATTGATTAATA-AAAACCTTGAAGAAA
1 TTAGAATTGATTAATATAAAACCTTGAAGAAA
37013873 TTAGAATTGA
1 TTAGAATTGA
37013883 AAAAAAATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 23 0.59
32 11 0.28
33 5 0.13
ACGTcount: A:0.47, C:0.04, G:0.15, T:0.34
Consensus pattern (32 bp):
TTAGAATTGATTAATATAAAACCTTGAAGAAA
Found at i:37014581 original size:20 final size:20
Alignment explanation
Indices: 37014556--37014594 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
37014546 GCGTGGGATG
*
37014556 GATGTCTTTGATGGGACAAT
1 GATGTCTGTGATGGGACAAT
37014576 GATGTCTGTGATGGGACAA
1 GATGTCTGTGATGGGACAA
37014595 ATCGTATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.10, G:0.33, T:0.31
Consensus pattern (20 bp):
GATGTCTGTGATGGGACAAT
Found at i:37016065 original size:825 final size:825
Alignment explanation
Indices: 37014474--37016954 Score: 4379
Period size: 825 Copynumber: 3.0 Consensus size: 825
37014464 TCTTGGAGGT
* *
37014474 ATTTATAGTTGAAGGTTCCATGTAAGGTCACATTAACGTGTTGGACTTTCCATTAAGCCATCATT
1 ATTTATAGTTGAGGGTTCCATGTAAGGTCACATTAACGTGTTGGGCTTTCCATTAAGCCATCATT
* *
37014539 ACAGAACGCGTGGGATGGATGTCTTTGATGGGACAATGATGTCTGTGATGGGACAAATCGTATCA
66 ACAGAACGCGTGGGATGGATGTCTTTAATGGGACGATGATGTCTGTGATGGGACAAATCGTATCA
* * *
37014604 TTTATTCTAATTTGATGGTATGGAGATGTTGAACCCATGTGGTATTTGTTGACCAACAACTTCAT
131 TTTATTCTAATTTGATGGTATGGAGATGTTGAACCCACGTGGTATTTGGTGACCTACAACTTCAT
* * *
37014669 GTTCCCGATGAAGCTCAAGGACCTGAACGATGGATGGTATGTGTTTGTTCAAATAGTATTTGTAA
196 GTTCCCGATGAAGCTCAAGGACCTGAACGATGGATAGTATGTGCTTGTTCAAATAGTCTTTGTAA
* * * *
37014734 AGGGGATTGCAAATGACCTTCCAGCTTATTGTCAATTGTCTTACTTTTTGTGTGTTCTCTTCACT
261 A-GGG-TTACAGATGACCTTCCAGCTTATTGTCAATTGTCTTACTGTTTGTGTGTTCTCTTTACT
*
37014799 TGCCATGTGTCTTGACACAGATGGGGGGTATAACAATATTTCCCCCTTTCGAGTCGATAGGAAGG
324 TGCCATGTGTCTTGACACAGATGGGGGGTATAACAATATTTCCCCCTTTCGAGTCGAGAGGAAGG
*
37014864 TTATAAAATGATCTTCCTTGAGACACTCTAATTCATTAACTTTCTCTTTTACAGGTTGCTCCGGT
389 TTATAAAGTGATCTTCCTTGAGACACTCTAATTCATTAACTTTCTCTTTTACAGGTTGCTCCGGT
*
37014929 TGGAGACTTTGTTTTATAGTGAAACGTTATATCAAAACCTTTGATATTTTGCCATAAATGTATTC
454 TGGAGACTTTGTTTTATAGTGAAACGTTATATCAAAACCTTTGAGATTTTGCCATAAATGTATTC
*
37014994 TAAGGATTGCGTTTCTAGGGAGTCGTGATAATGATGAACAACAGCTTTTTGGAAATGGTGGTGAG
519 TAAGGATTGCGTTTCTAGGGAGTCGTGATAATGATGAACAATAGCTTTTTGGAAATGGTGGTGAG
* *
37015059 ATGCTATTAAATGTTGTTTGTCTTTCAAAATAGTGCATTTTGGGAAATAGGCCTATGTATTATGG
584 ATGCTATTAAATGTTGTTTGTCTTTCAAAACAGTGCGTTTTGGGAAATAGGCCTATGTATTATGG
37015124 GTTTTCTTCTTCGAAGTTGTATTGCCTCCTTTTCTATTTGAAATTTTTGCATCTTTTGTTGGTGA
649 GTTTTCTTCTTCGAAGTTGTATTGCCTCCTTTTCTATTTGAAATTTTTGCATCTTTTGTTGGTGA
* *
37015189 TTTTCTAGTCTTATTTGGTTTTCTAGGATGATTTCTACATCTTCAAAGTTTTCTTGCTTCGATTC
714 TTTTCTAGTCTTATTTGGTTTTCTGGGATGATTTCTGCATCTTCAAAGTTTTCTTGCTTCGATTC
*
37015254 GTTTCGCAATTATTGTTCTTTGTTATCATTGGTGTTATTTTTTTAAC
779 GTTTCGCAATTATTGTTCTTTGTTGTCATTGGTGTTATTTTTTTAAC
*
37015301 ATTTATAGTTGAGGGTTCCATGTAAGGTCACATTAACGTGTTGGGCTTTCCATTAAGCCATCACT
1 ATTTATAGTTGAGGGTTCCATGTAAGGTCACATTAACGTGTTGGGCTTTCCATTAAGCCATCATT
37015366 ACAGAACGCGTGGGATGGATGTCTTTAATGGGACGATGATGTCTGTGATGGGACAAATCGTATCA
66 ACAGAACGCGTGGGATGGATGTCTTTAATGGGACGATGATGTCTGTGATGGGACAAATCGTATCA
*
37015431 TTTATTCTAATTTGATGGTATGGAGATGTTGAACCCACGTAGTATTTGGTGACCTACAACTTCAT
131 TTTATTCTAATTTGATGGTATGGAGATGTTGAACCCACGTGGTATTTGGTGACCTACAACTTCAT
*
37015496 GTTGCCGATGAAGCTCAAGGACCTGAACGATGGATAGTATGTGCTTGTTCAAATAGTCTTTGTAA
196 GTTCCCGATGAAGCTCAAGGACCTGAACGATGGATAGTATGTGCTTGTTCAAATAGTCTTTGTAA
* *
37015561 AGGGTTACAGATGAACTTCCAACTTATTGTCAATTGTCTTACTGTTTGTGTGTTCTCTTTACTTG
261 AGGGTTACAGATGACCTTCCAGCTTATTGTCAATTGTCTTACTGTTTGTGTGTTCTCTTTACTTG
*
37015626 CCATGTGTCTTGACACAGATGGGGGGTATAACAATATTTCCCCCTTTCGAGTTGAGAGGAAGGTT
326 CCATGTGTCTTGACACAGATGGGGGGTATAACAATATTTCCCCCTTTCGAGTCGAGAGGAAGGTT
*
37015691 ATAAAGTGATATTCCTTGAGACACTCTAATTCATTAACTTTCTCTTTTACAGGTTGCTCCGGTTG
391 ATAAAGTGATCTTCCTTGAGACACTCTAATTCATTAACTTTCTCTTTTACAGGTTGCTCCGGTTG
37015756 GAGACTTTGTTTTATAGTGAAACGTTATATCAAAACCTTTGAGATTTTGCCATAAATGTATTCTA
456 GAGACTTTGTTTTATAGTGAAACGTTATATCAAAACCTTTGAGATTTTGCCATAAATGTATTCTA
* *
37015821 AGGATTGTGTTTCTAGGGAGTCGTGATAATGATGAACAATAGCTTTTTTGAAATGGTGGTGAGAT
521 AGGATTGCGTTTCTAGGGAGTCGTGATAATGATGAACAATAGCTTTTTGGAAATGGTGGTGAGAT
* * *
37015886 GCTATTAAATGTTGTTTGTCTTTCAATACAATGTGTTTTGGGAAATAGGCCTATGTATTATGGGT
586 GCTATTAAATGTTGTTTGTCTTTCAAAACAGTGCGTTTTGGGAAATAGGCCTATGTATTATGGGT
*
37015951 TTTCTTCTTCGAATTTGTATTGCCTCCTTTTCTATTTGAAATTTTTGCATCTTTTGTTGGTGATT
651 TTTCTTCTTCGAAGTTGTATTGCCTCCTTTTCTATTTGAAATTTTTGCATCTTTTGTTGGTGATT
*
37016016 TTCTAGTCTTATTTGGTTTTCTGGGATGATTTCTGCATCTTCAAAGTTTTCTTGTTTCGATTCGT
716 TTCTAGTCTTATTTGGTTTTCTGGGATGATTTCTGCATCTTCAAAGTTTTCTTGCTTCGATTCGT
37016081 TTCGCAATTATTGTTCTTTGTTGTCATTGGTGTTATTTTTTTAAC
781 TTCGCAATTATTGTTCTTTGTTGTCATTGGTGTTATTTTTTTAAC
37016126 ATTTATAGTTGAGGGTTCCATGTAAGGTCACATTAACGTGTTGGGCTTTCCATTAAGCCATCATT
1 ATTTATAGTTGAGGGTTCCATGTAAGGTCACATTAACGTGTTGGGCTTTCCATTAAGCCATCATT
* *
37016191 ACAGAACGCGTGGGATGAATGTCTTTAATGGGACGATGATGTCTGTAATGGGACAAATCGTATCA
66 ACAGAACGCGTGGGATGGATGTCTTTAATGGGACGATGATGTCTGTGATGGGACAAATCGTATCA
*
37016256 TTTATTCTAATCTGATGGTATGGAGATGTTGAACCCACGTGGTATTTGGTGACCTACAACTTCAT
131 TTTATTCTAATTTGATGGTATGGAGATGTTGAACCCACGTGGTATTTGGTGACCTACAACTTCAT
*
37016321 GTTCCCGATGAAGCTCAAGGACCTGAACGACGGATAGTATGTGCTTGTTCAAATAGTCTTTGTAA
196 GTTCCCGATGAAGCTCAAGGACCTGAACGATGGATAGTATGTGCTTGTTCAAATAGTCTTTGTAA
* *
37016386 AGGGTTACAGATGACCTTCCAGCTTATTGTCAATTGTTTTACTGTTTGTGTGTTCTCTTTACTTA
261 AGGGTTACAGATGACCTTCCAGCTTATTGTCAATTGTCTTACTGTTTGTGTGTTCTCTTTACTTG
37016451 CCATGTGTCTTGACACAGATGGGGGGTATAACAATATTTCCCCCTTTCGAGTCGAGAGGAAGGTT
326 CCATGTGTCTTGACACAGATGGGGGGTATAACAATATTTCCCCCTTTCGAGTCGAGAGGAAGGTT
* * *
37016516 ATAAAGTGATCTTCCTTGAGACACTCTAATTCATTAACTTTCTCTTTTATAGGTTTCTCCGTTTG
391 ATAAAGTGATCTTCCTTGAGACACTCTAATTCATTAACTTTCTCTTTTACAGGTTGCTCCGGTTG
* * *
37016581 GTGACTTTGTTTTATAGTGAAACGTTATATCAAAACCTTTGAGATTATGCAATAAATGTATTCTA
456 GAGACTTTGTTTTATAGTGAAACGTTATATCAAAACCTTTGAGATTTTGCCATAAATGTATTCTA
* *
37016646 AGGATTACGTTTCTAGGGAGTCGTGATAATGATGAACAATAGCGTTTTGGAAATGGTGGTGAGAT
521 AGGATTGCGTTTCTAGGGAGTCGTGATAATGATGAACAATAGCTTTTTGGAAATGGTGGTGAGAT
* *
37016711 GCTATTAAATGTTGTTTGCCTTTGAAAACAGTGCGTTTTGGGAAATAGGCCTATGTATTATGGGT
586 GCTATTAAATGTTGTTTGTCTTTCAAAACAGTGCGTTTTGGGAAATAGGCCTATGTATTATGGGT
* *
37016776 TTTCTTCTTTGAAGTTGTATTTCCTCCTTTTCTATTTGAAATTTTTGCATCTTTTGTTGGTGATT
651 TTTCTTCTTCGAAGTTGTATTGCCTCCTTTTCTATTTGAAATTTTTGCATCTTTTGTTGGTGATT
* * *
37016841 TTCTAGTCTTATTTGGTTTTCCGGGATGATTTCTGCATCTTCAAAG-TTTCTTGCTTCAATTAGT
716 TTCTAGTCTTATTTGGTTTTCTGGGATGATTTCTGCATCTTCAAAGTTTTCTTGCTTCGATTCGT
* * *
37016905 TTCGTAGTTATTGTTCTTTCTTGTCATTGGTGTTATTTCTTTTAAC
781 TTCGCAATTATTGTTCTTTGTTGTCATTGGTGTTATTT-TTTTAAC
37016951 ATTT
1 ATTT
37016955 TTGTTAAAAA
Statistics
Matches: 1578, Mismatches: 75, Indels: 4
0.95 0.05 0.00
Matches are distributed among these distances:
824 50 0.03
825 1277 0.81
826 3 0.00
827 248 0.16
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (825 bp):
ATTTATAGTTGAGGGTTCCATGTAAGGTCACATTAACGTGTTGGGCTTTCCATTAAGCCATCATT
ACAGAACGCGTGGGATGGATGTCTTTAATGGGACGATGATGTCTGTGATGGGACAAATCGTATCA
TTTATTCTAATTTGATGGTATGGAGATGTTGAACCCACGTGGTATTTGGTGACCTACAACTTCAT
GTTCCCGATGAAGCTCAAGGACCTGAACGATGGATAGTATGTGCTTGTTCAAATAGTCTTTGTAA
AGGGTTACAGATGACCTTCCAGCTTATTGTCAATTGTCTTACTGTTTGTGTGTTCTCTTTACTTG
CCATGTGTCTTGACACAGATGGGGGGTATAACAATATTTCCCCCTTTCGAGTCGAGAGGAAGGTT
ATAAAGTGATCTTCCTTGAGACACTCTAATTCATTAACTTTCTCTTTTACAGGTTGCTCCGGTTG
GAGACTTTGTTTTATAGTGAAACGTTATATCAAAACCTTTGAGATTTTGCCATAAATGTATTCTA
AGGATTGCGTTTCTAGGGAGTCGTGATAATGATGAACAATAGCTTTTTGGAAATGGTGGTGAGAT
GCTATTAAATGTTGTTTGTCTTTCAAAACAGTGCGTTTTGGGAAATAGGCCTATGTATTATGGGT
TTTCTTCTTCGAAGTTGTATTGCCTCCTTTTCTATTTGAAATTTTTGCATCTTTTGTTGGTGATT
TTCTAGTCTTATTTGGTTTTCTGGGATGATTTCTGCATCTTCAAAGTTTTCTTGCTTCGATTCGT
TTCGCAATTATTGTTCTTTGTTGTCATTGGTGTTATTTTTTTAAC
Found at i:37016234 original size:20 final size:21
Alignment explanation
Indices: 37016204--37016244 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
37016194 GAACGCGTGG
*
37016204 GATGAATGTCTTTAATGGGAC
1 GATGAATGTCTGTAATGGGAC
37016225 GATG-ATGTCTGTAATGGGAC
1 GATGAATGTCTGTAATGGGAC
37016245 AAATCGTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.27, C:0.10, G:0.32, T:0.32
Consensus pattern (21 bp):
GATGAATGTCTGTAATGGGAC
Found at i:37021803 original size:12 final size:12
Alignment explanation
Indices: 37021782--37021816 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
37021772 TGCTTCACAA
*
37021782 CTTGCGCTTGCC
1 CTTGCTCTTGCC
37021794 CTTGCTCTTGCC
1 CTTGCTCTTGCC
*
37021806 CTTGGTCTTGC
1 CTTGCTCTTGC
37021817 GCATCACCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.37, G:0.23, T:0.40
Consensus pattern (12 bp):
CTTGCTCTTGCC
Found at i:37030133 original size:33 final size:33
Alignment explanation
Indices: 37030096--37030213 Score: 155
Period size: 33 Copynumber: 3.5 Consensus size: 33
37030086 TACTCTCTGT
37030096 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
*
37030129 TTGGTGTGTCGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
* ** * * *
37030162 TTGGTGTATTGGAGGGATTGGCTCGTGTGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
37030195 TCTGGTGTGTTTGGTTGGA
1 T-TGGTGTG-TTGGTTGGA
37030214 CTAACGATGT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
33 59 0.82
34 6 0.08
35 7 0.10
ACGTcount: A:0.14, C:0.09, G:0.37, T:0.40
Consensus pattern (33 bp):
TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
Found at i:37034867 original size:37 final size:37
Alignment explanation
Indices: 37034817--37034911 Score: 109
Period size: 37 Copynumber: 2.6 Consensus size: 37
37034807 AGTATATCTG
* * * *
37034817 TAGATTTTACTCATTTGAGCTCCATTTAGTATAACAA
1 TAGAATTTGCTCATTTGAGCTCCACTCAGTATAACAA
* *
37034854 TAGAATTTGCTCATTTGAACTTCACTCAGTATAACAA
1 TAGAATTTGCTCATTTGAGCTCCACTCAGTATAACAA
* * *
37034891 TAAAATTTGGTCGTTTGAGCT
1 TAGAATTTGCTCATTTGAGCT
37034912 ACTTTCAGTA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (37 bp):
TAGAATTTGCTCATTTGAGCTCCACTCAGTATAACAA
Found at i:37034920 original size:37 final size:37
Alignment explanation
Indices: 37034826--37034931 Score: 106
Period size: 37 Copynumber: 2.8 Consensus size: 37
37034816 GTAGATTTTA
* *
37034826 CTCATTTGAGCTCCATTT-AGTATAACAATAGAATTTG
1 CTCATTTGAGCTAC-TTTCAGTATAACAATAAAATTTG
* * **
37034863 CTCATTTGAACTTCACTCAGTATAACAATAAAATTTG
1 CTCATTTGAGCTACTTTCAGTATAACAATAAAATTTG
* * *
37034900 GTCGTTTGAGCTACTTTCAGTAGAATCAATAA
1 CTCATTTGAGCTACTTTCAGTATAA-CAATAA
37034932 GTATAGCTCG
Statistics
Matches: 55, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
36 1 0.02
37 48 0.87
38 6 0.11
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (37 bp):
CTCATTTGAGCTACTTTCAGTATAACAATAAAATTTG
Found at i:37035627 original size:23 final size:23
Alignment explanation
Indices: 37035574--37035629 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
37035564 TTTCAACTTT
* * *
37035574 CTTAATTAAGCTTTAATAAATCA
1 CTTAATTAAGCCTGAATAAACCA
*
37035597 -TTAATTAAGCCTGATTAAACCA
1 CTTAATTAAGCCTGAATAAACCA
37035619 CTTAATTAAGC
1 CTTAATTAAGC
37035630 ATAACCTCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (23 bp):
CTTAATTAAGCCTGAATAAACCA
Found at i:37044598 original size:40 final size:40
Alignment explanation
Indices: 37044554--37044755 Score: 239
Period size: 40 Copynumber: 5.1 Consensus size: 40
37044544 GTAAATGCGT
* *
37044554 TCAGGGGTACCAAAGTACAAATAAGGGCACGTATGTGCAA
1 TCAGGGGTACCGAAGTACGAATAAGGGCACGTATGTGCAA
* * *
37044594 TCAGGGGTACTGAAGTACGAA-CAGGGATACGTATGTGCAA
1 TCAGGGGTACCGAAGTACGAATAAGGG-CACGTATGTGCAA
* * * *
37044634 TTAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAA
1 TCAGGGGTACCGAAGTACGAATAAGGGCACGTATGTGCAA
* *
37044674 TCAGGGGTACTGAAGTACGAATAGGGGCACGTATGTGCAA
1 TCAGGGGTACCGAAGTACGAATAAGGGCACGTATGTGCAA
* * *
37044714 TCA-GGGTGCCGAAGTACGAA-CAGGAGCACGCATGTGCAA
1 TCAGGGGTACCGAAGTACGAATAAGG-GCACGTATGTGCAA
37044753 TCA
1 TCA
37044756 TTCAATAATT
Statistics
Matches: 138, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
38 2 0.01
39 35 0.25
40 98 0.71
41 3 0.02
ACGTcount: A:0.33, C:0.17, G:0.31, T:0.18
Consensus pattern (40 bp):
TCAGGGGTACCGAAGTACGAATAAGGGCACGTATGTGCAA
Found at i:37044675 original size:80 final size:80
Alignment explanation
Indices: 37044554--37044755 Score: 298
Period size: 80 Copynumber: 2.5 Consensus size: 80
37044544 GTAAATGCGT
*
37044554 TCAGGGGTACCAAAGTACAAATAAGGGCACGTATGTGCAATCAGGGGTACTGAAGTACGAACAGG
1 TCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATCAGGGGTACTGAAGTACGAACAGG
*
37044619 GATACGTATGTGCAA
66 GACACGTATGTGCAA
* *
37044634 TTAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATCAGGGGTACTGAAGTACGAATAGG
1 TCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATCAGGGGTACTGAAGTACGAACAGG
*
37044699 GGCACGTATGTGCAA
66 GACACGTATGTGCAA
* * * * * *
37044714 TCA-GGGTGCCGAAGTACGAACAGGAGCACGCATGTGCAATCA
1 TCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATCA
37044756 TTCAATAATT
Statistics
Matches: 110, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 33 0.30
80 77 0.70
ACGTcount: A:0.33, C:0.17, G:0.31, T:0.18
Consensus pattern (80 bp):
TCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATCAGGGGTACTGAAGTACGAACAGG
GACACGTATGTGCAA
Found at i:37044679 original size:20 final size:20
Alignment explanation
Indices: 37044582--37044719 Score: 88
Period size: 20 Copynumber: 6.9 Consensus size: 20
37044572 AAATAAGGGC
37044582 ACGTATGTGCAATCAGGGGT
1 ACGTATGTGCAATCAGGGGT
* * *
37044602 AC-TGAAGTACGAA-CAGGGAT
1 ACGT-ATGTGC-AATCAGGGGT
*
37044622 ACGTATGTGCAATTAGGGGT
1 ACGTATGTGCAATCAGGGGT
** * * *
37044642 ACCAAAGTACAAAT-AGGGGC
1 ACGTATGTGC-AATCAGGGGT
37044662 ACGTATGTGCAATCAGGGGT
1 ACGTATGTGCAATCAGGGGT
* * *
37044682 AC-TGAAGTACGAAT-AGGGGC
1 ACGT-ATGTGC-AATCAGGGGT
37044702 ACGTATGTGCAATCAGGG
1 ACGTATGTGCAATCAGGG
37044720 TGCCGAAGTA
Statistics
Matches: 86, Mismatches: 22, Indels: 20
0.67 0.17 0.16
Matches are distributed among these distances:
19 10 0.12
20 66 0.77
21 10 0.12
ACGTcount: A:0.32, C:0.15, G:0.33, T:0.20
Consensus pattern (20 bp):
ACGTATGTGCAATCAGGGGT
Found at i:37052116 original size:25 final size:24
Alignment explanation
Indices: 37052088--37052184 Score: 88
Period size: 25 Copynumber: 3.9 Consensus size: 24
37052078 AAGCTCTTCC
*
37052088 GAGCTATATAATCGGAAGCTCATAT
1 GAGCAATAT-ATCGGAAGCTCATAT
* *
37052113 GAGCCATATATCGAGAAGCTCATGT
1 GAGCAATATATCG-GAAGCTCATAT
* *
37052138 GAGCAATTTATCAGGAAGCTCATAA
1 GAGCAATATATC-GGAAGCTCATAT
*
37052163 GAGCCAA-GTATCAGGAAGCTCA
1 GAG-CAATATATC-GGAAGCTCA
37052185 AGAGAGCTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
24 4 0.06
25 54 0.87
26 4 0.06
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.23
Consensus pattern (24 bp):
GAGCAATATATCGGAAGCTCATAT
Found at i:37056910 original size:3 final size:3
Alignment explanation
Indices: 37056902--37056948 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
37056892 TGCCATGGTC
37056902 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AG
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AG
37056949 AAGAAGAAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.32
Consensus pattern (3 bp):
AGT
Found at i:37056953 original size:3 final size:3
Alignment explanation
Indices: 37056947--37056973 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
37056937 TAGTAGTAGT
37056947 AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA
37056974 GACTATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:37057272 original size:155 final size:155
Alignment explanation
Indices: 37056990--37057300 Score: 622
Period size: 155 Copynumber: 2.0 Consensus size: 155
37056980 AAAATCCCTC
37056990 TCAAAGTCTCCAACGGCCCCAATACAACCAGCAACACCAATAAGAAGTGCTCCAACCACCACCAC
1 TCAAAGTCTCCAACGGCCCCAATACAACCAGCAACACCAATAAGAAGTGCTCCAACCACCACCAC
37057055 TTGCACCACCACTAAACCCACTAAATCATCCGATATAATCACAACCGCTACCAATGCCGCCACTA
66 TTGCACCACCACTAAACCCACTAAATCATCCGATATAATCACAACCGCTACCAATGCCGCCACTA
37057120 AAGTTGGCAGTGCAACAGAAGCCAA
131 AAGTTGGCAGTGCAACAGAAGCCAA
37057145 TCAAAGTCTCCAACGGCCCCAATACAACCAGCAACACCAATAAGAAGTGCTCCAACCACCACCAC
1 TCAAAGTCTCCAACGGCCCCAATACAACCAGCAACACCAATAAGAAGTGCTCCAACCACCACCAC
37057210 TTGCACCACCACTAAACCCACTAAATCATCCGATATAATCACAACCGCTACCAATGCCGCCACTA
66 TTGCACCACCACTAAACCCACTAAATCATCCGATATAATCACAACCGCTACCAATGCCGCCACTA
37057275 AAGTTGGCAGTGCAACAGAAGCCAA
131 AAGTTGGCAGTGCAACAGAAGCCAA
37057300 T
1 T
37057301 GTTGACTGTG
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 156 1.00
ACGTcount: A:0.37, C:0.36, G:0.12, T:0.14
Consensus pattern (155 bp):
TCAAAGTCTCCAACGGCCCCAATACAACCAGCAACACCAATAAGAAGTGCTCCAACCACCACCAC
TTGCACCACCACTAAACCCACTAAATCATCCGATATAATCACAACCGCTACCAATGCCGCCACTA
AAGTTGGCAGTGCAACAGAAGCCAA
Found at i:37063403 original size:15 final size:15
Alignment explanation
Indices: 37063380--37063409 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37063370 CTCTATTTTT
37063380 AAATAATTTTTAAAA
1 AAATAATTTTTAAAA
*
37063395 AAATTATTTTTAAAA
1 AAATAATTTTTAAAA
37063410 TTTTTTATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
AAATAATTTTTAAAA
Found at i:37064530 original size:7 final size:7
Alignment explanation
Indices: 37064518--37064543 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37064508 TAGTCGATTG
37064518 GTATTTA
1 GTATTTA
37064525 GTATTTA
1 GTATTTA
37064532 GTATTTA
1 GTATTTA
37064539 GTATT
1 GTATT
37064544 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:37065605 original size:43 final size:44
Alignment explanation
Indices: 37065553--37065651 Score: 146
Period size: 44 Copynumber: 2.2 Consensus size: 44
37065543 TTATTTGTAC
* *
37065553 AAATATTTTGA-ATATTTTGATATTATTTTATGTAATAAAATAG
1 AAATTTTTTGAGATATTTTGATATTATTTAATGTAATAAAATAG
*
37065596 AAATTTTTTGAGTTATTTTGATATTATTTAATGTAATAAAATAG
1 AAATTTTTTGAGATATTTTGATATTATTTAATGTAATAAAATAG
*
37065640 AAGTTTATTTGA
1 AAATTT-TTTGA
37065652 TGTAATAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 10 0.20
44 35 0.70
45 5 0.10
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.49
Consensus pattern (44 bp):
AAATTTTTTGAGATATTTTGATATTATTTAATGTAATAAAATAG
Found at i:37065614 original size:44 final size:45
Alignment explanation
Indices: 37065565--37065651 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 45
37065555 ATATTTTGAA
*
37065565 TATTTTGATATTATTTTATGTAATAAAATAGAAATTT-TTTGAGT
1 TATTTTGATATTATTTAATGTAATAAAATAGAAATTTATTTGAGT
*
37065609 TATTTTGATATTATTTAATGTAATAAAATAGAAGTTTATTTGA
1 TATTTTGATATTATTTAATGTAATAAAATAGAAATTTATTTGA
37065652 TGTAATAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 35 0.88
45 5 0.12
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (45 bp):
TATTTTGATATTATTTAATGTAATAAAATAGAAATTTATTTGAGT
Found at i:37065680 original size:24 final size:25
Alignment explanation
Indices: 37065619--37065770 Score: 192
Period size: 25 Copynumber: 6.3 Consensus size: 25
37065609 TATTTTGATA
*
37065619 TTATTTAATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
37065644 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
37065669 TTA-TTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
37065693 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAGT
* ** *
37065718 TTTTTTGA-GT--T-ATTTTG-A-T
1 TTATTTGATGTAATAAAATAGAAGT
37065737 ATTATTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
37065763 TTATTTGA
1 TTATTTGA
37065771 GTTATTTTGA
Statistics
Matches: 109, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
19 1 0.01
20 8 0.07
21 5 0.05
22 1 0.01
23 1 0.01
24 29 0.27
25 63 0.58
26 1 0.01
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.44
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:37065757 original size:45 final size:45
Alignment explanation
Indices: 37065693--37065804 Score: 206
Period size: 45 Copynumber: 2.5 Consensus size: 45
37065683 AAATAGAAGT
*
37065693 TTATTTGATGTAATAAAATAGAAATTTTTTTGAGTTATTTTGATA
1 TTATTTGATGTAATAAAATAGAAATTTATTTGAGTTATTTTGATA
*
37065738 TTATTTGATGTAATAAAATAGAAGTTTATTTGAGTTATTTTGATA
1 TTATTTGATGTAATAAAATAGAAATTTATTTGAGTTATTTTGATA
37065783 TTATTTGATGTAATAAAATAGA
1 TTATTTGATGTAATAAAATAGA
37065805 TGGCGCGTTC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (45 bp):
TTATTTGATGTAATAAAATAGAAATTTATTTGAGTTATTTTGATA
Found at i:37069788 original size:36 final size:37
Alignment explanation
Indices: 37069704--37069799 Score: 99
Period size: 36 Copynumber: 2.6 Consensus size: 37
37069694 TAATATATGT
* * *
37069704 GTGGAACTGAAATGAATAT-TGACTTGAAAATGGAAAA
1 GTGGAATTGAATTGAAT-TGTGACTTGAAAATGAAAAA
*
37069741 GT-GAATTTTGAATTGAATTGTGA-TTGAAAGTGAAAAA
1 GTGGAA--TTGAATTGAATTGTGACTTGAAAATGAAAAA
*
37069778 GTGGAATTGAATTGAAATGTGA
1 GTGGAATTGAATTGAATTGTGA
37069800 ATTTGGAGAC
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
36 18 0.36
37 17 0.34
38 15 0.30
ACGTcount: A:0.42, C:0.02, G:0.26, T:0.30
Consensus pattern (37 bp):
GTGGAATTGAATTGAATTGTGACTTGAAAATGAAAAA
Found at i:37071701 original size:10 final size:10
Alignment explanation
Indices: 37071673--37071702 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
37071663 ATAACCTGCA
37071673 CAAAACATAC
1 CAAAACATAC
37071683 CAAATACATAC
1 CAAA-ACATAC
37071694 CAAAACATA
1 CAAAACATA
37071703 TCATTTAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (10 bp):
CAAAACATAC
Found at i:37072638 original size:22 final size:20
Alignment explanation
Indices: 37072588--37072639 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 20
37072578 AAGGCACCGT
37072588 AGTGCAAACAGAGGCACCAA
1 AGTGCAAACAGAGGCACCAA
37072608 AGTGCAAACAGAGAGCA-CATA
1 AGTGCAAACAGAG-GCACCA-A
37072629 AGTGCTAAACA
1 AGTGC-AAACA
37072640 ATTAATTGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 15 0.52
21 9 0.31
22 5 0.17
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (20 bp):
AGTGCAAACAGAGGCACCAA
Found at i:37077935 original size:44 final size:44
Alignment explanation
Indices: 37077885--37078003 Score: 141
Period size: 44 Copynumber: 2.7 Consensus size: 44
37077875 TGATGCGATT
* * *
37077885 CACTCTACTGCAACTTCAGAGAGATAAGATCTAT-TACTTTAATC
1 CACTCTACTGCAACTTCAGGGAGATAAGAT-TATCGACTTCAATC
* * *
37077929 CACTCTACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATC
1 CACTCTACTGCAACTTCAGGGAGATAAGATTATCGACTTCAATC
** *
37077973 TGCTCCACTGCAACTTCAGGGAGATAAGATT
1 CACTCTACTGCAACTTCAGGGAGATAAGATT
37078004 TGCCATCTTC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 3 0.05
44 60 0.95
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (44 bp):
CACTCTACTGCAACTTCAGGGAGATAAGATTATCGACTTCAATC
Found at i:37078145 original size:128 final size:128
Alignment explanation
Indices: 37077994--37078478 Score: 835
Period size: 128 Copynumber: 3.8 Consensus size: 128
37077984 AACTTCAGGG
*
37077994 AGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
* * *
37078059 ACCTACTCCACTGCTGACCAGAGAGATAGGACTTGTGGCTTAAATATGCTTCCTTACTCTTGA
66 ACCTACTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGA
* **
37078122 AGATAAGATTTACCGTCTTCGATCTGCTCTGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
37078187 ACCTACTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGA
66 ACCTACTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGA
* * *
37078250 AGATAAGATTTGTCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
*
37078315 ACCTACTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGA
66 ACCTACTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGA
* * *
37078378 AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTAATTTCCA
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
*
37078443 ACCTATTCCACTACTGACCAGGGAGATAGGACTTGT
66 ACCTACTCCACTACTGACCAGGGAGATAGGACTTGT
37078479 AGTTTCACCG
Statistics
Matches: 339, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
128 339 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (128 bp):
AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
ACCTACTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGA
Found at i:37085307 original size:2 final size:2
Alignment explanation
Indices: 37085300--37085334 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
37085290 TATACCATAC
37085300 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37085335 ATGAGGTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:37087693 original size:24 final size:25
Alignment explanation
Indices: 37087666--37087714 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
37087656 CCCTTTCAGC
*
37087666 TTTT-ACACGACTTTTCTCATTATA
1 TTTTAACACAACTTTTCTCATTATA
*
37087690 TTTTGAACATAACTTTTCTCATTAT
1 TTTT-AACACAACTTTTCTCATTAT
37087715 TAAAGTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.19
26 17 0.81
ACGTcount: A:0.27, C:0.18, G:0.04, T:0.51
Consensus pattern (25 bp):
TTTTAACACAACTTTTCTCATTATA
Found at i:37088413 original size:8 final size:8
Alignment explanation
Indices: 37088402--37088427 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
37088392 TAAAAATTAT
37088402 AATTCTAA
1 AATTCTAA
37088410 AATTCTAA
1 AATTCTAA
37088418 AATTCTAA
1 AATTCTAA
37088426 AA
1 AA
37088428 AGCTCTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.35
Consensus pattern (8 bp):
AATTCTAA
Found at i:37092243 original size:23 final size:23
Alignment explanation
Indices: 37092217--37092335 Score: 136
Period size: 23 Copynumber: 5.2 Consensus size: 23
37092207 ATAAGTGCCA
37092217 CACTAATATGTAGCCGAAGCTAC
1 CACTAATATGTAGCCGAAGCTAC
*
37092240 CACTGATATGTAGCC-ATAGCTAC
1 CACTAATATGTAGCCGA-AGCTAC
*
37092263 CACTGAA-ATGTAGCCGAGGCTAC
1 CACT-AATATGTAGCCGAAGCTAC
* * *
37092286 CACTGATATGTAGCTGTAGCTAC
1 CACTAATATGTAGCCGAAGCTAC
*
37092309 CATTGAAT-TGTAGCCGAAGCTAC
1 CACT-AATATGTAGCCGAAGCTAC
37092332 CACT
1 CACT
37092336 GATCAATAAC
Statistics
Matches: 79, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
22 2 0.03
23 73 0.92
24 4 0.05
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (23 bp):
CACTAATATGTAGCCGAAGCTAC
Found at i:37092291 original size:46 final size:46
Alignment explanation
Indices: 37092224--37092338 Score: 185
Period size: 46 Copynumber: 2.5 Consensus size: 46
37092214 CCACACTAAT
37092224 ATGTAGCCGAAGCTACCACTGATATGTAGCCATAGCTACCACTGAA
1 ATGTAGCCGAAGCTACCACTGATATGTAGCCATAGCTACCACTGAA
* ** *
37092270 ATGTAGCCGAGGCTACCACTGATATGTAGCTGTAGCTACCATTGAA
1 ATGTAGCCGAAGCTACCACTGATATGTAGCCATAGCTACCACTGAA
*
37092316 TTGTAGCCGAAGCTACCACTGAT
1 ATGTAGCCGAAGCTACCACTGAT
37092339 CAATAACACT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 63 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (46 bp):
ATGTAGCCGAAGCTACCACTGATATGTAGCCATAGCTACCACTGAA
Found at i:37096614 original size:43 final size:43
Alignment explanation
Indices: 37096514--37096748 Score: 234
Period size: 43 Copynumber: 5.6 Consensus size: 43
37096504 TTCCTTGAGG
* * * * * *
37096514 GGTTGCTAAGTGTTGATTCC-CCGAATTATTGACTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCACTGATTGTAAAGGT
* **
37096556 GATT-CGTAAGTGCTGATTCCACCGTATCTTTGATTGTGAAAGG-
1 GGTTGC-TAAGTGCTGATTCCACCGTATCACTGATTGT-AAAGGT
* * *
37096599 GGTTGCTATGTGCTGATTCC-CCGTATCACTGAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCACTGATTGTAAAGGT
**
37096641 GGTTGCTAAGTGCTGATTCCACCGTATCTTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCACCGTATCACTGATTGT-AAAGGT
*
37096684 GGTTGCTATGTGCTGATTCC-CCGTATCACTGAATT-T-AAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCACTG-ATTGTAAAGGT
*
37096725 GGTTGCTAAGTGCTGAATCCACCG
1 GGTTGCTAAGTGCTGATTCCACCG
37096749 AGTAACGAAA
Statistics
Matches: 160, Mismatches: 23, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
40 4 0.03
41 24 0.15
42 60 0.38
43 61 0.38
44 11 0.07
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (43 bp):
GGTTGCTAAGTGCTGATTCCACCGTATCACTGATTGTAAAGGT
Found at i:37096645 original size:42 final size:42
Alignment explanation
Indices: 37096514--37096740 Score: 237
Period size: 42 Copynumber: 5.4 Consensus size: 42
37096504 TTCCTTGAGG
* * * * *
37096514 GGTTGCTAAGTGTTGATTCCCCGAATTATTGACTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGAATGTAAAGGT
* * *
37096556 GATT-CGTAAGTGCTGATTCCACCGTATCTTTGATTGTGAAAGG-
1 GGTTGC-TAAGTGCTGATTCC-CCGTATCATTGAATGT-AAAGGT
* * *
37096599 GGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGAATGTAAAGGT
* *
37096641 GGTTGCTAAGTGCTGATTCCACCGTATCTTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCGTATCATTGAATGT-AAAGGT
* * *
37096684 GGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TTAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGAATGTAAAGGT
37096725 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
37096741 ATCCACCGAG
Statistics
Matches: 153, Mismatches: 24, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
40 4 0.03
41 22 0.14
42 58 0.38
43 58 0.38
44 11 0.07
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCCGTATCATTGAATGTAAAGGT
Found at i:37096654 original size:85 final size:84
Alignment explanation
Indices: 37096511--37096748 Score: 361
Period size: 85 Copynumber: 2.8 Consensus size: 84
37096501 AGATTCCTTG
* * * * * * *
37096511 AGGGGTTGCTAAGTGTTGATTCCCCGAATTATTGACTCTAAAGGTGATT-CGTAAGTGCTGATTC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TAAAGGTGGTTGC-TAAGTGCTGATTC
37096575 CACCGTATCTTTGATTGTGAA
64 CACCGTATCTTTGATTGTGAA
37096596 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCC
37096661 ACCGTATCTTTGATTGTGAA
65 ACCGTATCTTTGATTGTGAA
* *
37096681 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTTAAGGTGGTTGCTAAGTGCTGAATCCA
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCA
37096746 CCG
66 CCG
37096749 AGTAACGAAA
Statistics
Matches: 142, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
84 29 0.20
85 112 0.79
86 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (84 bp):
AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCA
CCGTATCTTTGATTGTGAA
Found at i:37098693 original size:26 final size:27
Alignment explanation
Indices: 37098664--37098720 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
37098654 GAATGAAAAA
**
37098664 AAATCAACAAATAGGTT-GCAATTAAT
1 AAATCAACAAATAGGTTAAAAATTAAT
* *
37098690 AAATTAATAAATAGGTTAAAAATTAAT
1 AAATCAACAAATAGGTTAAAAATTAAT
37098717 AAAT
1 AAAT
37098721 ATGTTAATGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.56, C:0.05, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATCAACAAATAGGTTAAAAATTAAT
Found at i:37098714 original size:19 final size:20
Alignment explanation
Indices: 37098685--37098728 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
37098675 TAGGTTGCAA
37098685 TTAATAAATTAATAAATAGG
1 TTAATAAATTAATAAATAGG
*
37098705 TTAA-AAATTAATAAATATG
1 TTAATAAATTAATAAATAGG
37098724 TTAAT
1 TTAAT
37098729 GAGGTGTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39
Consensus pattern (20 bp):
TTAATAAATTAATAAATAGG
Found at i:37101647 original size:40 final size:38
Alignment explanation
Indices: 37101597--37101697 Score: 139
Period size: 40 Copynumber: 2.6 Consensus size: 38
37101587 CGAGTATTAT
* *
37101597 AATTATAATTACAATAATTATAATAATGTTTGACCGAAAA
1 AATTATAATTACAATAATTATAATAATATTCGACCG--AA
* * *
37101637 AATTACAATTACAATAATTATAATAATATTCGATCGTA
1 AATTATAATTACAATAATTATAATAATATTCGACCGAA
37101675 AATTATAATTACAATAATTATAA
1 AATTATAATTACAATAATTATAA
37101698 CAAGGATTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 23 0.42
40 32 0.58
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (38 bp):
AATTATAATTACAATAATTATAATAATATTCGACCGAA
Found at i:37103830 original size:14 final size:14
Alignment explanation
Indices: 37103811--37103865 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 14
37103801 TATAGTTTTT
37103811 TTAATTTTTATATA
1 TTAATTTTTATATA
37103825 TTAATTTTTATA-A
1 TTAATTTTTATATA
37103838 TTTATATTTCTTTATATA
1 -TTA-A-TT-TTTATATA
37103856 TTAATTTTTA
1 TTAATTTTTA
37103866 ACATTTTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
13 1 0.03
14 19 0.53
15 3 0.08
16 3 0.08
17 9 0.25
18 1 0.03
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (14 bp):
TTAATTTTTATATA
Found at i:37106372 original size:307 final size:307
Alignment explanation
Indices: 37105815--37106429 Score: 813
Period size: 307 Copynumber: 2.0 Consensus size: 307
37105805 GACATGTTGC
* *
37105815 GTCGAACTACCACTGACAATACAATTCTACAGCTCAGGGCACACAAGTGATCAACATGGGTTTGT
1 GTCGAACTACCACTGACAATACAATTCTACAACTCAGGGCACACAAGTGATCAACATGGGTTTAT
* *
37105880 ATTCGCCACTATATCAATTGTTTGATATTTAACGAGTCAGCAGATGTACTGATTAATGGATACCC
66 ATTCGCCACTATATCAATTGTTTGATATTTAACGAGTCAGCAAATGTACTGATTAATGGATAACC
* ** **
37105945 TATTTCATTTTCTAGGTAGGGTACGAACTTTTCCGACACCAGTTCCGTGAAATGTTGGAAAACTT
131 TATTTCATTTCCTAGACAGGGTACGAACTTGCCCGACACCAGTTCCGTGAAATGTTGGAAAACTT
*** * * *
37106010 ATGGGTTGTTAACGATGCAAGTGGGAGCTACCTATCCAACATAACCTTTGATTAGTGGACACAAT
196 ATGGGCCATTAACGATGCAAGTGCGAGCTACCAATCCAACATAACCTTCGATTAGTGGACACAAT
* *
37106075 CATATGATGGGGGTCTACGATATGGGCACT-TGACAACAGACCTGGCG
261 CATATAATGGGGGTCTACGATATGGGCA-TATGACAACAGACCTAGCG
* * * *
37106122 GTCGAACTACCACTGATAGTACAATTCTACAACTCAGTGCACACAAGTGATGAACATGGGTTTAT
1 GTCGAACTACCACTGACAATACAATTCTACAACTCAGGGCACACAAGTGATCAACATGGGTTTAT
* * *
37106187 ATTCGTCACTATATCAATTGTTTGATATTTAATCG-GTCAGCAAATGTTCTGATTAGTGGATAAC
66 ATTCGCCACTATATCAATTGTTTGATATTTAA-CGAGTCAGCAAATGTACTGATTAATGGATAAC
* * * ** **
37106251 CTATTT-ACTTTCCTCGACAGGGTATGAGCTTGCCCGACACCTTTTTTGTGAAATGTTGGAAAAC
130 CTATTTCA-TTTCCTAGACAGGGTACGAACTTGCCCGACACCAGTTCCGTGAAATGTTGGAAAAC
* ** * *
37106315 TTATGGGCCATTAATGATGCGGGTGCGAGCTACCAATCCAACATACCCTTCGATTAGTGGACGCA
194 TTATGGGCCATTAACGATGCAAGTGCGAGCTACCAATCCAACATAACCTTCGATTAGTGGACACA
* * * * *
37106380 ATCGTATAATTGGGGTCTATGATATTGGCATATGACAATAGACCTAGCG
259 ATCATATAATGGGGGTCTACGATATGGGCATATGACAACAGACCTAGCG
37106429 G
1 G
37106430 AATGCATCAA
Statistics
Matches: 264, Mismatches: 41, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
306 2 0.01
307 260 0.98
308 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (307 bp):
GTCGAACTACCACTGACAATACAATTCTACAACTCAGGGCACACAAGTGATCAACATGGGTTTAT
ATTCGCCACTATATCAATTGTTTGATATTTAACGAGTCAGCAAATGTACTGATTAATGGATAACC
TATTTCATTTCCTAGACAGGGTACGAACTTGCCCGACACCAGTTCCGTGAAATGTTGGAAAACTT
ATGGGCCATTAACGATGCAAGTGCGAGCTACCAATCCAACATAACCTTCGATTAGTGGACACAAT
CATATAATGGGGGTCTACGATATGGGCATATGACAACAGACCTAGCG
Found at i:37108395 original size:19 final size:18
Alignment explanation
Indices: 37108368--37108418 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
37108358 CATATATTTA
* *
37108368 TTCTCCTTTTTTCTTTTCT
1 TTCTTCTTTTTT-TTTCCT
37108387 TTCTTCTTTTATTTTTCCT
1 TTCTTCTTTT-TTTTTCCT
37108406 TT-TTCCTTTTTTT
1 TTCTT-CTTTTTTT
37108419 AATAGGAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 5 0.18
19 21 0.75
20 2 0.07
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (18 bp):
TTCTTCTTTTTTTTTCCT
Found at i:37128539 original size:15 final size:15
Alignment explanation
Indices: 37128516--37128559 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
37128506 TAACTTTTGC
37128516 TCCCCTCCCATCCCA
1 TCCCCTCCCATCCCA
*
37128531 TCCCATCCCATCCCA
1 TCCCCTCCCATCCCA
*
37128546 TCCCCTCCCCTCCC
1 TCCCCTCCCATCCC
37128560 CCTTTTACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.11, C:0.68, G:0.00, T:0.20
Consensus pattern (15 bp):
TCCCCTCCCATCCCA
Found at i:37128560 original size:5 final size:5
Alignment explanation
Indices: 37128516--37128559 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
37128506 TAACTTTTGC
* * *
37128516 TCCCC TCCCA TCCCA TCCCA TCCCA TCCCA TCCCC TCCCC TCCC
1 TCCCA TCCCA TCCCA TCCCA TCCCA TCCCA TCCCA TCCCA TCCC
37128560 CCTTTTACCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.11, C:0.68, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCA
Found at i:37130271 original size:3 final size:3
Alignment explanation
Indices: 37130263--37130291 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
37130253 AGATACGATA
37130263 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
37130292 TGAATCATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:37131828 original size:14 final size:14
Alignment explanation
Indices: 37131809--37131835 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37131799 GTGGTCCAGT
37131809 TGAACTGAACCGAG
1 TGAACTGAACCGAG
37131823 TGAACTGAACCGA
1 TGAACTGAACCGA
37131836 CCAAGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (14 bp):
TGAACTGAACCGAG
Found at i:37136755 original size:17 final size:17
Alignment explanation
Indices: 37136725--37136768 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
37136715 AATTGTTCTT
*
37136725 GAAAATTGTTA-TTTCA
1 GAAAATTGTCATTTTCA
37136741 GAAAAGTTGTCATTTTCA
1 GAAAA-TTGTCATTTTCA
37136759 GAAAAATTGT
1 G-AAAATTGT
37136769 TTTATCCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 5 0.21
17 5 0.21
18 10 0.42
19 4 0.17
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.39
Consensus pattern (17 bp):
GAAAATTGTCATTTTCA
Found at i:37137765 original size:24 final size:24
Alignment explanation
Indices: 37137733--37137781 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
37137723 TTAAAACCAG
*
37137733 CTATAACTCCCCATACTCTCATCC
1 CTATAACTCCCCACACTCTCATCC
37137757 CTATAACTCCCCACACTCTCATCC
1 CTATAACTCCCCACACTCTCATCC
37137781 C
1 C
37137782 ATTAAAAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.49, G:0.00, T:0.27
Consensus pattern (24 bp):
CTATAACTCCCCACACTCTCATCC
Found at i:37139939 original size:26 final size:27
Alignment explanation
Indices: 37139902--37139974 Score: 96
Period size: 26 Copynumber: 2.7 Consensus size: 27
37139892 AAACACATCA
*
37139902 GGAAAGAAAGCCTTTGTGGCGTAATAT
1 GGAAAGAAAGCCTTTGTGGCGGAATAT
*
37139929 -GAAAGAAAGCCTTTGTGGTGGAATAT
1 GGAAAGAAAGCCTTTGTGGCGGAATAT
*
37139955 GGAAGGAATA-CCTTTGTGGC
1 GGAAAGAA-AGCCTTTGTGGC
37139975 AAAATCTGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
26 24 0.60
27 15 0.38
28 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (27 bp):
GGAAAGAAAGCCTTTGTGGCGGAATAT
Found at i:37139972 original size:27 final size:26
Alignment explanation
Indices: 37139902--37140002 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 26
37139892 AAACACATCA
* *
37139902 GGAAAGAAAGCCTTTGTGGCGTAATAT
1 GGAAGGAAA-CCTTTGTGGCGAAATAT
* * *
37139929 -GAAAGAAAGCCTTTGTGGTGGAATAT
1 GGAAGGAAA-CCTTTGTGGCGAAATAT
* *
37139955 GGAAGGAATACCTTTGTGGCAAAATCT
1 GGAAGGAA-ACCTTTGTGGCGAAATAT
*
37139982 GTAAGGAACACCTTTGTGGCG
1 GGAAGGAA-ACCTTTGTGGCG
37140003 TACTCTTAAG
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 24 0.39
27 37 0.60
28 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.26
Consensus pattern (26 bp):
GGAAGGAAACCTTTGTGGCGAAATAT
Found at i:37144553 original size:40 final size:40
Alignment explanation
Indices: 37144501--37144579 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
37144491 TGATTGGATA
* *
37144501 AAAAAACGCCGCTAAAAATTAAGCATTAGCGGCGCTTTTC
1 AAAAAACGCCGCTAAAAATCAAGCATTAGAGGCGCTTTTC
* * * *
37144541 AAAAAATGCCGCTAAAGATCAAGTATTAGAGGTGCTTTT
1 AAAAAACGCCGCTAAAAATCAAGCATTAGAGGCGCTTTT
37144580 TGGAAAACGC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (40 bp):
AAAAAACGCCGCTAAAAATCAAGCATTAGAGGCGCTTTTC
Found at i:37144733 original size:41 final size:41
Alignment explanation
Indices: 37144660--37144936 Score: 294
Period size: 41 Copynumber: 6.8 Consensus size: 41
37144650 GCGTTTTCGA
* ** *
37144660 GGTTTTAGCAGCGTTTTTGAAAAAGCATCGCTAATG-TATGG
1 GGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCT-CGG
* * * *
37144701 GGCTTTAACGGCGTTTTTGAAGAAGCGCCGCTAATGTTCGG
1 GGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGG
* **
37144742 GGTTTTAGTGGCGTTTTT-AAAAAGCGTTGCTAATGCAT-GG
1 GGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC-TCGG
* * * * * *
37144782 GGCTTTAGCGGCGATGTTGAAAAAGCACTGCTAATGCTCGAA
1 GGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG-G
* *
37144824 GGTTTTAGCGGTGTTTTT-AAAGAAGTGCCGCTAATGCTCGG
1 GGTTTTAGCGGCGTTTTTGAAA-AAGCGCCGCTAATGCTCGG
*
37144865 GGTTTTAGCGGCGTTTTTGAAAAAGCGCCGTTAATGCTCGG
1 GGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGG
37144906 GGTTTTAGCGGCGTTTTT-AGAAAAGCGCCGC
1 GGTTTTAGCGGCGTTTTTGA-AAAAGCGCCGC
37144937 AAAAAACATT
Statistics
Matches: 195, Mismatches: 33, Indels: 16
0.80 0.14 0.07
Matches are distributed among these distances:
40 32 0.16
41 130 0.67
42 33 0.17
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.31
Consensus pattern (41 bp):
GGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGG
Found at i:37145326 original size:22 final size:21
Alignment explanation
Indices: 37145301--37145347 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
37145291 GAGTTACTAT
*
37145301 TTTAAGGTTTATGGA-TTATGGG
1 TTTAAGGGTTAT-GATTTAT-GG
37145323 TTTAAGGGTTATGATTTATGG
1 TTTAAGGGTTATGATTTATGG
37145344 TTTA
1 TTTA
37145348 TGATTTAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (21 bp):
TTTAAGGGTTATGATTTATGG
Found at i:37145347 original size:7 final size:7
Alignment explanation
Indices: 37145301--37145437 Score: 50
Period size: 7 Copynumber: 19.4 Consensus size: 7
37145291 GAGTTACTAT
*
37145301 TTTAAGG
1 TTTATGG
37145308 TTTATGG
1 TTTATGG
*
37145315 ATTATGGG
1 TTTAT-GG
*
37145323 TTTAAGG
1 TTTATGG
* *
37145330 GTTATGA
1 TTTATGG
37145337 TTTATGG
1 TTTATGG
*
37145344 TTTATGA
1 TTTATGG
*
37145351 TTTAAAGG
1 TTT-ATGG
* *
37145359 CTT-GGG
1 TTTATGG
37145365 TTTA-GG
1 TTTATGG
37145371 TTTA-GAG
1 TTTATG-G
*
37145378 GTTATGTG
1 TTTATG-G
* *
37145386 TTAAGGG
1 TTTATGG
*
37145393 TTTAGGG
1 TTTATGG
*
37145400 TTTTAGGG
1 -TTTATGG
*
37145408 TTTTAAGG
1 -TTTATGG
37145416 TTTA-GG
1 TTTATGG
37145422 TTTATGG
1 TTTATGG
37145429 TTTA-GG
1 TTTATGG
37145435 TTT
1 TTT
37145438 TAGATTAACT
Statistics
Matches: 101, Mismatches: 22, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
6 22 0.22
7 51 0.50
8 28 0.28
ACGTcount: A:0.20, C:0.01, G:0.31, T:0.47
Consensus pattern (7 bp):
TTTATGG
Found at i:37145374 original size:6 final size:7
Alignment explanation
Indices: 37145362--37145440 Score: 56
Period size: 7 Copynumber: 11.1 Consensus size: 7
37145352 TTAAAGGCTT
37145362 GGGTTTA
1 GGGTTTA
37145369 -GGTTTA
1 GGGTTTA
37145375 GAGG-TTA
1 G-GGTTTA
* *
37145382 TGTGTTAA
1 -GGGTTTA
37145390 GGGTTTA
1 GGGTTTA
37145397 GGGTTTTA
1 GGG-TTTA
37145405 GGGTTTTA
1 GGG-TTTA
*
37145413 AGGTTTA
1 GGGTTTA
37145420 -GGTTTA
1 GGGTTTA
*
37145426 TGGTTTA
1 GGGTTTA
*
37145433 GGTTTTA
1 GGGTTTA
37145440 G
1 G
37145441 ATTAACTAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
6 12 0.20
7 28 0.47
8 19 0.32
ACGTcount: A:0.18, C:0.00, G:0.35, T:0.47
Consensus pattern (7 bp):
GGGTTTA
Found at i:37146824 original size:20 final size:20
Alignment explanation
Indices: 37146796--37146849 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
37146786 TTATTACATA
37146796 AAAAATTATATAAAAATTTT
1 AAAAATTATATAAAAATTTT
* * **
37146816 AAAATTTATCTAATTATTTT
1 AAAAATTATATAAAAATTTT
* *
37146836 AAATATTATTTAAA
1 AAAAATTATATAAA
37146850 TTTTCAAAAA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
AAAAATTATATAAAAATTTT
Found at i:37148190 original size:29 final size:29
Alignment explanation
Indices: 37148145--37148202 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
37148135 TTCTTGATAC
37148145 GGTCGTTGAAAGCACCAAAAATATCCTAT
1 GGTCGTTGAAAGCACCAAAAATATCCTAT
* *
37148174 GGTCGTTGAAAGTACCAAAAATATTCTAT
1 GGTCGTTGAAAGCACCAAAAATATCCTAT
37148203 CCCTAAAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (29 bp):
GGTCGTTGAAAGCACCAAAAATATCCTAT
Found at i:37150670 original size:19 final size:21
Alignment explanation
Indices: 37150632--37150670 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37150622 CAGTGATATT
*
37150632 TTTTTATATATTGTTCTAAAG
1 TTTTTATATATTCTTCTAAAG
37150653 TTTTTATAT-TTCTT-TAAA
1 TTTTTATATATTCTTCTAAA
37150671 TTTGCATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (21 bp):
TTTTTATATATTCTTCTAAAG
Found at i:37154614 original size:23 final size:21
Alignment explanation
Indices: 37154588--37154642 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
37154578 TTAACACTAA
*
37154588 TTAATTTTTTATATTAATAATGT
1 TTAATTTTTTATATT--TAATAT
*
37154611 TTAA-TTTTAATATTTAATAT
1 TTAATTTTTTATATTTAATAT
37154631 TTAATATTTTTA
1 TTAAT-TTTTTA
37154643 AATGTTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 9 0.33
22 14 0.52
23 4 0.15
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
TTAATTTTTTATATTTAATAT
Found at i:37154621 original size:13 final size:14
Alignment explanation
Indices: 37154605--37154639 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
37154595 TTTATATTAA
*
37154605 TAATGTTTAAT-TT
1 TAATATTTAATATT
37154618 TAATATTTAATATT
1 TAATATTTAATATT
37154632 TAATATTT
1 TAATATTT
37154640 TTAAATGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (14 bp):
TAATATTTAATATT
Found at i:37154626 original size:7 final size:7
Alignment explanation
Indices: 37154605--37154639 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
37154595 TTTATATTAA
*
37154605 TAATGTT
1 TAATATT
37154612 TAAT-TT
1 TAATATT
37154618 TAATATT
1 TAATATT
37154625 TAATATT
1 TAATATT
37154632 TAATATT
1 TAATATT
37154639 T
1 T
37154640 TTAAATGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (7 bp):
TAATATT
Found at i:37154776 original size:41 final size:42
Alignment explanation
Indices: 37154716--37154828 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 42
37154706 GCGTTTGTGA
* *
37154716 CATGACCTTTAGTGACGTTTTTATCTAAA-CG-CGCTAAAGGT
1 CATGACCTTTAGCGGCGTTTTT-TCTAAAGCGCCGCTAAAGGT
* ***
37154757 CATGATCTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGGT
1 CATGACCTTTAGCGGCGTTT-TTTCTAAAGCGCCGCTAAAGGT
*
37154800 CATGACCTTTAGCGGTGTTTATTTCTAAA
1 CATGACCTTTAGCGGCGTTT-TTTCTAAA
37154829 AACGCCGCAA
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
41 21 0.37
42 3 0.05
43 33 0.58
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (42 bp):
CATGACCTTTAGCGGCGTTTTTTCTAAAGCGCCGCTAAAGGT
Found at i:37156625 original size:3 final size:3
Alignment explanation
Indices: 37156617--37156642 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
37156607 TACTCTTTCC
37156617 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
37156643 AAGTCAGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:37164692 original size:15 final size:16
Alignment explanation
Indices: 37164674--37164704 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37164664 AAATTAAATT
37164674 AATTAA-CTAAATGCA
1 AATTAACCTAAATGCA
37164689 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
37164705 GATGAGATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.52, C:0.16, G:0.06, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:37168595 original size:16 final size:17
Alignment explanation
Indices: 37168574--37168630 Score: 57
Period size: 16 Copynumber: 3.5 Consensus size: 17
37168564 AAGAGCCTTT
*
37168574 AAATCAATTTG-AAATC
1 AAATCAAATTGAAAATC
37168590 AAATCAAATTGAAAATC
1 AAATCAAATTGAAAATC
** *
37168607 -AATCTGATTG-AAATA
1 AAATCAAATTGAAAATC
37168622 AAATCAAAT
1 AAATCAAAT
37168631 CGAGATATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 4 0.12
16 24 0.73
17 5 0.15
ACGTcount: A:0.54, C:0.11, G:0.07, T:0.28
Consensus pattern (17 bp):
AAATCAAATTGAAAATC
Found at i:37171558 original size:82 final size:80
Alignment explanation
Indices: 37171434--37171864 Score: 452
Period size: 82 Copynumber: 5.4 Consensus size: 80
37171424 TTAAAATTTT
* * * *
37171434 GAAACAAAATCAAAATC-AAT----TCTGTTAAACGACAGGATTAAATCTTGAAAAAAAATTATT
1 GAAACAAAATCAAAATCGAATAAAATCTGTTAAACG-CGGGAATAAATC-CGAAAAAGAATTATT
* *
37171494 TAATTAAATCTTGTTTA
64 TAATTAATTCTTGTTTG
* *
37171511 GAAACAAAATCAAAATCGAATAAAATCTGTTAAACGGGTGGAATAAATCCCAAAATAGAATTATT
1 GAAACAAAATCAAAATCGAATAAAATCTGTTAAACGCG-GGAATAAATCCGAAAA-AGAATTATT
*
37171576 TAATTAAATCTTGTTTG
64 TAATTAATTCTTGTTTG
* * * *
37171593 GAAACAAAATC--AA---AATAAAATTTGTTAAATAGCGAGAATAAATCCCAAAATAGAATTATT
1 GAAACAAAATCAAAATCGAATAAAATCTGTTAAA-CGCGGGAATAAATCCGAAAA-AGAATTATT
37171653 TAATTAATTCTTGTTTG
64 TAATTAATTCTTGTTTG
* *
37171670 GAAACAAAATTAAAATCGAATAAAATCTGTTAAACAGCGGGAATAAATCCTGAAATAGAATTATT
1 GAAACAAAATCAAAATCGAATAAAATCTGTTAAAC-GCGGGAATAAATCC-GAAAAAGAATTATT
* **
37171735 CAATTAATTCTCATTTG
64 TAATTAATTCTTGTTTG
* * * *
37171752 GAAACAAAATCAACATCGAATAAAATCTATTAAATG-GTAGGAATAAATCCCGAAATAGAATTAT
1 GAAACAAAATCAAAATCGAATAAAATCTGTTAAACGCG--GGAATAAAT-CCGAAAAAGAATTAT
* *
37171816 TCAATTAATTCCTGTTTG
63 TTAATTAATTCTTGTTTG
* *
37171834 GAAACAAAATCAAAATGGAATAAAATTTGTT
1 GAAACAAAATCAAAATCGAATAAAATCTGTT
37171865 GAACAATAGG
Statistics
Matches: 304, Mismatches: 32, Indels: 31
0.83 0.09 0.08
Matches are distributed among these distances:
77 83 0.27
78 5 0.02
79 2 0.01
80 3 0.01
81 5 0.02
82 201 0.66
83 5 0.02
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (80 bp):
GAAACAAAATCAAAATCGAATAAAATCTGTTAAACGCGGGAATAAATCCGAAAAAGAATTATTTA
ATTAATTCTTGTTTG
Found at i:37171607 original size:42 final size:42
Alignment explanation
Indices: 37171561--37171690 Score: 100
Period size: 42 Copynumber: 3.3 Consensus size: 42
37171551 GAATAAATCC
37171561 CAAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAAT
1 CAAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAAT
* * * *
37171603 CAAAATA-AA--ATTT-GTTAAA--TAG---CGAGAA-TAAAT
1 CAAAATAGAATTATTTAATTAAATCTTGTTTGGA-AACAAAAT
*
37171636 CCCAAAATAGAATTATTTAATTAATTCTTGTTTGGAAACAAAAT
1 --CAAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAAT
* *
37171680 TAAAATCGAAT
1 CAAAATAGAAT
37171691 AAAATCTGTT
Statistics
Matches: 64, Mismatches: 11, Indels: 26
0.63 0.11 0.26
Matches are distributed among these distances:
33 6 0.09
34 2 0.03
35 7 0.11
36 4 0.06
38 9 0.14
39 8 0.12
41 4 0.06
42 16 0.25
43 2 0.03
44 6 0.09
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.33
Consensus pattern (42 bp):
CAAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAAT
Found at i:37171651 original size:159 final size:162
Alignment explanation
Indices: 37171487--37171888 Score: 519
Period size: 159 Copynumber: 2.5 Consensus size: 162
37171477 CTTGAAAAAA
* * *
37171487 AATTATTTAATTAAATCTTGTTTAGAAACAAAATCAAAATCGAATAAAATCTGTTAAAC-GGGTG
1 AATTATTTAATTAATTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAACAGCG-G
* **
37171551 GAATAAATCCCAAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAATC-A-A-AATAAAA
65 GAATAAATCCCAAAATAGAATTATTCAATTAAATCTCATTTGGAAACAAAATCAACACAATAAAA
* *
37171613 TTTGTTAAATAGCG-A-GAATAAATCCCAAAATAG
130 TCTATTAAAT-G-GTAGGAATAAATCCCAAAATAG
*
37171646 AATTATTTAATTAATTCTTGTTTGGAAACAAAATTAAAATCGAATAAAATCTGTTAAACAGCGGG
1 AATTATTTAATTAATTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAACAGCGGG
** *
37171711 AATAAATCCTGAAATAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAACATCGAATAAA
66 AATAAATCCCAAAATAGAATTATTCAATTAAATCTCATTTGGAAACAAAATCAACA-C-AATAAA
*
37171776 ATCTATTAAATGGTAGGAATAAATCCCGAAATAG
129 ATCTATTAAATGGTAGGAATAAATCCCAAAATAG
* * * * * ***
37171810 AATTATTCAATTAATTCCTGTTTGGAAACAAAATCAAAATGGAATAAAATTTGTTGAACAATAGG
1 AATTATTTAATTAATTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAACAGCGGG
*
37171875 AATAAATCTCAAAA
66 AATAAATCCCAAAA
37171889 CATATTTTAT
Statistics
Matches: 210, Mismatches: 25, Indels: 11
0.85 0.10 0.04
Matches are distributed among these distances:
159 104 0.50
160 3 0.01
161 1 0.00
162 1 0.00
163 2 0.01
164 99 0.47
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (162 bp):
AATTATTTAATTAATTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAACAGCGGG
AATAAATCCCAAAATAGAATTATTCAATTAAATCTCATTTGGAAACAAAATCAACACAATAAAAT
CTATTAAATGGTAGGAATAAATCCCAAAATAG
Found at i:37171875 original size:82 final size:82
Alignment explanation
Indices: 37171487--37171888 Score: 494
Period size: 82 Copynumber: 5.0 Consensus size: 82
37171477 CTTGAAAAAA
* * *
37171487 AATTATTTAATTAAATCTTGTTTAGAAACAAAATCAAAATCGAATAAAATCTGTTAAACGGGT-G
1 AATTATTTAATTAATTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAAC-AGTAG
37171551 GAATAAATCCCAAAATAG
65 GAATAAATCCCAAAATAG
* * * *
37171569 AATTATTTAATTAAATCTTGTTTGGAAACAAAATC--AA---AATAAAATTTGTTAAATAG-CGA
1 AATTATTTAATTAATTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAACAGTAG-
37171628 GAATAAATCCCAAAATAG
65 GAATAAATCCCAAAATAG
* **
37171646 AATTATTTAATTAATTCTTGTTTGGAAACAAAATTAAAATCGAATAAAATCTGTTAAACAGCGGG
1 AATTATTTAATTAATTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAACAGTAGG
**
37171711 AATAAATCCTGAAATAG
66 AATAAATCCCAAAATAG
* ** * * **
37171728 AATTATTCAATTAATTCTCATTTGGAAACAAAATCAACATCGAATAAAATCTATTAAATGGTAGG
1 AATTATTTAATTAATTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAACAGTAGG
*
37171793 AATAAATCCCGAAATAG
66 AATAAATCCCAAAATAG
* * * * * *
37171810 AATTATTCAATTAATTCCTGTTTGGAAACAAAATCAAAATGGAATAAAATTTGTTGAACAATAGG
1 AATTATTTAATTAATTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAACAGTAGG
*
37171875 AATAAATCTCAAAA
66 AATAAATCCCAAAA
37171889 CATATTTTAT
Statistics
Matches: 277, Mismatches: 35, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
76 2 0.01
77 66 0.24
79 2 0.01
80 2 0.01
82 204 0.74
83 1 0.00
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (82 bp):
AATTATTTAATTAATTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAACAGTAGG
AATAAATCCCAAAATAG
Found at i:37175364 original size:13 final size:13
Alignment explanation
Indices: 37175348--37175372 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37175338 ATTTTTCATA
37175348 TTTATTTATTTTC
1 TTTATTTATTTTC
37175361 TTTATTTATTTT
1 TTTATTTATTTT
37175373 ATATCATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTATTTATTTTC
Found at i:37176877 original size:46 final size:45
Alignment explanation
Indices: 37176827--37176933 Score: 180
Period size: 46 Copynumber: 2.4 Consensus size: 45
37176817 TTCAATAAAT
37176827 AAAACCATACTGAGTTGTGGAAAGTAGGTATGGTATTTCAGT-AACG
1 AAAACCATACTGAGTTGTGGAAAGTAGGTATGGTATTT-AGTGAA-G
37176873 AAAACCATACTGAGTTGTGGAAAGTAGGTATGGTATTTAGTGAAG
1 AAAACCATACTGAGTTGTGGAAAGTAGGTATGGTATTTAGTGAAG
*
37176918 AAAACCATACTAAGTT
1 AAAACCATACTGAGTT
37176934 ATAACATTGT
Statistics
Matches: 59, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
45 19 0.32
46 40 0.68
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.28
Consensus pattern (45 bp):
AAAACCATACTGAGTTGTGGAAAGTAGGTATGGTATTTAGTGAAG
Found at i:37183792 original size:46 final size:46
Alignment explanation
Indices: 37183720--37183843 Score: 176
Period size: 46 Copynumber: 2.7 Consensus size: 46
37183710 AGTGTGGAAT
* * * **
37183720 GTAGGTATGGTAATTCAGTAAAGAAAACCATACTGAGTTTTGGATC
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
*
37183766 GTAGGTATGGTATTTCAGTAACGAAAACCATACTGAGTTGTGAAAA
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
* *
37183812 GTCGGTATGGTATTTTAGTAAAGAAAACCATA
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATA
37183844 TTGATTTATA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.30
Consensus pattern (46 bp):
GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
Found at i:37186531 original size:51 final size:51
Alignment explanation
Indices: 37186455--37186555 Score: 175
Period size: 51 Copynumber: 2.0 Consensus size: 51
37186445 ATTTCTCATA
* *
37186455 TAACTAGCATGATACTCATCCATAAATTGACTTGTCAAGGTCACGTAGGAC
1 TAACTAACATGATACTCATCCATAAATTGACTTGTCAAGGTCACATAGGAC
*
37186506 TAACTAACATGATACTCATCCATAAATTGACTTGTCAAGGTTACATAGGA
1 TAACTAACATGATACTCATCCATAAATTGACTTGTCAAGGTCACATAGGA
37186556 ATTTTTGGCT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (51 bp):
TAACTAACATGATACTCATCCATAAATTGACTTGTCAAGGTCACATAGGAC
Found at i:37192071 original size:16 final size:16
Alignment explanation
Indices: 37192044--37192090 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
37192034 TATTTGAAAC
37192044 ATTTTCTCTCTAGCTTT
1 ATTTT-TCTCTAGCTTT
*
37192061 ATTTTTCTCTATCTTT
1 ATTTTTCTCTAGCTTT
37192077 ATTTTTCTCTAGCT
1 ATTTTTCTCTAGCT
37192091 ATACCCAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
16 23 0.82
17 5 0.18
ACGTcount: A:0.13, C:0.21, G:0.04, T:0.62
Consensus pattern (16 bp):
ATTTTTCTCTAGCTTT
Found at i:37192694 original size:49 final size:49
Alignment explanation
Indices: 37192595--37192694 Score: 121
Period size: 49 Copynumber: 2.0 Consensus size: 49
37192585 TTATTTTATT
* * * *
37192595 TTAGAATAAGGTTTTTAAATCTTATTAAACTTCATCTATTTGATATTGA
1 TTAGAATAAGGTGTTTAAATCTTACTAAACTCCATCTATTAGATATTGA
* * *
37192644 TTAGAATAAGGTGTTTCAATCTTACTACACTCCTTCTATTAGA-ATATGA
1 TTAGAATAAGGTGTTTAAATCTTACTAAACTCCATCTATTAGATAT-TGA
37192693 TT
1 TT
37192695 TTACAAGCCT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 2 0.05
49 41 0.95
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (49 bp):
TTAGAATAAGGTGTTTAAATCTTACTAAACTCCATCTATTAGATATTGA
Found at i:37198792 original size:23 final size:23
Alignment explanation
Indices: 37198769--37198811 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
37198759 TATGAAATTA
37198769 AAATATAAAAATAT-ATAATTTT
1 AAATATAAAAATATGATAATTTT
* *
37198791 AATTTTAAAAATATGATAATT
1 AAATATAAAAATATGATAATT
37198812 GCTATTAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (23 bp):
AAATATAAAAATATGATAATTTT
Found at i:37200585 original size:29 final size:29
Alignment explanation
Indices: 37200535--37200590 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
37200525 AGGTCGTTTT
* * *
37200535 TTTTAAATTAGGGTTTTGGGCTAGTTTTAA
1 TTTTAAATTAGGGATATAGGCTA-TTTTAA
37200565 TTTT-AATTAGGGATATAGGCTATTTT
1 TTTTAAATTAGGGATATAGGCTATTTT
37200591 GCTAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 4 0.17
29 15 0.65
30 4 0.17
ACGTcount: A:0.25, C:0.04, G:0.21, T:0.50
Consensus pattern (29 bp):
TTTTAAATTAGGGATATAGGCTATTTTAA
Found at i:37202427 original size:30 final size:30
Alignment explanation
Indices: 37202384--37202445 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
37202374 AGAAATAAGT
37202384 TACATATACAGAAATAGGTAAAAAGATATA
1 TACATATACAGAAATAGGTAAAAAGATATA
* *
37202414 TACATTTATAGAAATAGGTAAAAAGATATA
1 TACATATACAGAAATAGGTAAAAAGATATA
37202444 TA
1 TA
37202446 ATAGTATGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.27
Consensus pattern (30 bp):
TACATATACAGAAATAGGTAAAAAGATATA
Found at i:37202686 original size:22 final size:23
Alignment explanation
Indices: 37202648--37202705 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 23
37202638 ATTATATTGA
*
37202648 AAATTACAAA-AAAAATAGATG-G
1 AAATTA-AAACAATAATAGATGAG
* *
37202670 AAATTAAAACAATAATATATGAT
1 AAATTAAAACAATAATAGATGAG
*
37202693 AAATTTAAACAAT
1 AAATTAAAACAAT
37202706 GTTAATAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 15 0.50
23 12 0.40
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.26
Consensus pattern (23 bp):
AAATTAAAACAATAATAGATGAG
Found at i:37202697 original size:23 final size:22
Alignment explanation
Indices: 37202670--37202731 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
37202660 AAATAGATGG
*
37202670 AAATTAAAACAATAATATATGAT
1 AAATTAAAACAATAATA-ATAAT
* **
37202693 AAATTTAAACAATGTTAATAAT
1 AAATTAAAACAATAATAATAAT
*
37202715 AAATTTAAAATAATAAT
1 AAA-TTAAAACAATAAT
37202732 TGAGCTTAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
22 7 0.23
23 23 0.77
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (22 bp):
AAATTAAAACAATAATAATAAT
Found at i:37204185 original size:45 final size:42
Alignment explanation
Indices: 37204146--37204226 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
37204136 TAAGACTCAC
* * * *
37204146 TAACTTCAATCTACTCCACTGCGACTTTAGGGAGATAAGACT
1 TAACCTCAACCTACTCCACTGCAACTTCAGGGAGATAAGACT
* *
37204188 TGACCTCAACCTACTCCACTGCAACTTCAGGGGGATAAG
1 TAACCTCAACCTACTCCACTGCAACTTCAGGGAGATAAG
37204227 GTTTGTGGCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (42 bp):
TAACCTCAACCTACTCCACTGCAACTTCAGGGAGATAAGACT
Found at i:37204403 original size:96 final size:94
Alignment explanation
Indices: 37204282--37204589 Score: 296
Period size: 96 Copynumber: 3.3 Consensus size: 94
37204272 TTTGCTATGA
* * *
37204282 TCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCCACTACA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCTACTACA
37204347 ACTTTAGGGAAATGAAATTCGTTATCTTCAG
66 ACTTTAGGGAAAT-AAA-TCGTTATCTTCAG
* * * *
37204378 TCTGCTCCACTGCAACTTCAGAGAGATAAGA-C--T--TGTA-A-CTTCAACCTGCTCTACTGCA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCTACTACA
* **
37204436 ACTTTAGGAAAAT-AAT-GTT-TGAT-ATG
66 ACTTTAGGGAAATAAATCGTTATCTTCA-G
* * * * * * *
37204462 ATCTGCTCTACTGCAACTTCAGAGAGACAATATTTGCAACTTATAGCTTGAATCTGTTCTACTAC
1 -TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCTACTAC
* * *
37204527 AACTTCAGAGAAATAAGATCTGCTATCTTCAG
65 AACTTTAGGGAAATAA-ATC-GTTATCTTCAG
*
37204559 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGA
37204590 CTTGTAACTT
Statistics
Matches: 166, Mismatches: 31, Indels: 30
0.73 0.14 0.13
Matches are distributed among these distances:
83 1 0.01
84 3 0.02
85 31 0.19
86 1 0.01
87 2 0.01
89 28 0.17
90 3 0.02
91 4 0.02
92 26 0.16
93 2 0.01
94 2 0.01
95 1 0.01
96 58 0.35
97 3 0.02
98 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (94 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCTACTACA
ACTTTAGGGAAATAAATCGTTATCTTCAG
Found at i:37204434 original size:44 final size:44
Alignment explanation
Indices: 37204146--37204980 Score: 407
Period size: 44 Copynumber: 18.9 Consensus size: 44
37204136 TAAGACTCAC
* * *
37204146 TAACTTCAATCTACTCCACTGCGACTTTAGGGAGATAAGACTTG
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
* * * * **
37204190 --ACCTCAACCTACTCCACTGCAACTTCAGGGGGATAAGGTTTG
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
** * * * * **
37204232 TGGCTTTAATCTGCTCCACTACAACTTCAGGAAAAT-AGGGTT-
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
* * * ** *
37204274 T-GCTAT-GATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGTAATT
1 TAACT-TCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--T--TG
* * * *
37204322 TATAGCTTCAATCTGTTCCACTACAACTTTAGGGAAATGAA-A-TTCG
1 TA-A-CTTCAATCTGCTCCACTGCAACTTCAGGGAGAT-AAGACTT-G
* * *
37204368 TTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTG
1 -TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
* * * * *
37204413 TAACTTCAACCTGCTCTACTGCAACTTTAGGAAAATAATG--TT-
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-GACTTG
* * * * * *
37204455 TGA-TAT-GATCTGCTCTACTGCAACTTCAGAGAGACAATATTTGCAACTTA
1 TAACT-TCAATCTGCTCCACTGCAACTTCAG-G-GA-GATA--AG--ACTTG
* * * * * * *
37204505 TAGCTTGAATCTGTTCTACTACAACTTCAGAGAAATAAGA-TCTG
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TG
* *
37204549 CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
1 -TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
* * ** * *
37204594 TAACTTTAACCTATTCCACTGTAACTTCAGGGAGATAAG-GTT-
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
* * * * * * *
37204636 TGA-TAT-GATTTGCTCTACTGCAACCTCAGAGAGATAAGATTTG
1 TAACT-TCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
* * ** * *
37204679 TAGCTTCAATCTACTCCACTATAACTTCAGGGAGATAGGATTTG
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
* * ** **
37204723 TAGCTTCAATTTGCTTTACTGCAACTTCAGGGAGATAAGGTTTG
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
** * * * * *
37204767 TGGCTTTAGTCTGCTTCACTGCAACTTTAGGGAGATAAAACTTG
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
** * * *
37204811 TAGTTTCAATCTGCCCCACTGCAACTTCAGGGGGATAAGATTTG
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
* * * *
37204855 TATCCTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAC--A
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
* * * *
37204897 TAACTTCAATCTGCTCCATTGCAACTTTAGGGAGATAGGA-TTAT
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G
** ** *
37204941 TGGCTTTGATCTGCTCCACTGGAACTTCAGGGAGATAAGA
1 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
37204981 TTCGCCATAA
Statistics
Matches: 594, Mismatches: 153, Indels: 88
0.71 0.18 0.11
Matches are distributed among these distances:
41 70 0.12
42 82 0.14
43 13 0.02
44 295 0.50
45 67 0.11
46 4 0.01
47 4 0.01
48 5 0.01
49 4 0.01
50 3 0.01
51 45 0.08
52 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
Found at i:37204440 original size:89 final size:87
Alignment explanation
Indices: 37204327--37204605 Score: 251
Period size: 89 Copynumber: 3.1 Consensus size: 87
37204317 TAATTTATAG
* *
37204327 CTTCAATCTGTTCCACTACAACTTTAGGGAAATGAAATTCGTTATCTTCAGTCTGCTCCACTGCA
1 CTTCAACCTGTTCTACTACAACTTTAGGGAAAT-AAA-TCGTTATCTTCAGTCTGCTCCACTGCA
37204392 ACTTCAGAGAGATAAGACTTGTAA
64 ACTTCAGAGAGATAAGACTTGTAA
* * * ** *
37204416 CTTCAACCTGCTCTACTGCAACTTTAGGAAAAT-AAT-GTT-TGAT-ATGATCTGCTCTACTGCA
1 CTTCAACCTGTTCTACTACAACTTTAGGGAAATAAATCGTTATCTTCA-G-TCTGCTCCACTGCA
* * *
37204477 ACTTCAGAGAGACAATATTTGCAACTTATAG
64 ACTTCAGAGAG---ATA--AG--ACTTGTAA
* * * * *
37204508 CTTGAATCTGTTCTACTACAACTTCAGAGAAATAAGATCTGCTATCTTCAGTCTGCTCCACTGCA
1 CTTCAACCTGTTCTACTACAACTTTAGGGAAATAA-ATC-GTTATCTTCAGTCTGCTCCACTGCA
*
37204573 ACTTCAGGGAGATAAGACTTGTAA
64 ACTTCAGAGAGATAAGACTTGTAA
*
37204597 CTTTAACCT
1 CTTCAACCT
37204606 ATTCCACTGT
Statistics
Matches: 147, Mismatches: 28, Indels: 30
0.72 0.14 0.15
Matches are distributed among these distances:
83 1 0.01
84 3 0.02
85 27 0.18
86 1 0.01
87 2 0.01
88 3 0.02
89 41 0.28
90 1 0.01
91 1 0.01
92 32 0.22
93 4 0.03
94 2 0.01
96 25 0.17
97 3 0.02
98 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.32
Consensus pattern (87 bp):
CTTCAACCTGTTCTACTACAACTTTAGGGAAATAAATCGTTATCTTCAGTCTGCTCCACTGCAAC
TTCAGAGAGATAAGACTTGTAA
Found at i:37204464 original size:181 final size:181
Alignment explanation
Indices: 37204201--37204680 Score: 640
Period size: 181 Copynumber: 2.7 Consensus size: 181
37204191 CCTCAACCTA
* ** ** * *
37204201 CTCCACTGCAACTTCAGGGGGATAAGGTTTGTGGCTTTAATCTGCTCCACTACAACTTCAGGAAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGCAACTTCAGGAAA
* * * * *
37204266 ATAGGGTTTGCTATGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGTAATTTATAGCTTC
66 ATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAACTTATAGCTTC
* * *
37204331 AATCTGTTCCACTACAACTTTAGGGAAATGAA-AT-TCGTTATCTTCAGTCTG
131 AATCTGTTCCACTACAACTTCAGAGAAAT-AAGATCT-GCTATCTTCAGTCTG
* * * *
37204382 CTCCACTGCAACTTCAGAGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAACTTTAGGAAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGCAACTTCAGGAAA
* * * * *
37204447 ATAATGTTTGATATGATCTGCTCTACTGCAACTTCAGAGAGACAATATTTGCAACTTATAGCTTG
66 ATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAACTTATAGCTTC
*
37204512 AATCTGTTCTACTACAACTTCAGAGAAATAAGATCTGCTATCTTCAGTCTG
131 AATCTGTTCCACTACAACTTCAGAGAAATAAGATCTGCTATCTTCAGTCTG
** * * *
37204563 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAACCTATTCCACTGTAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGCAACTTCAGGAAA
* *
37204628 ATAAGGTTTGATATGATTTGCTCTACTGCAACCTCAGAGAGATAAGATTTGTA
66 ATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTA
37204681 GCTTCAATCT
Statistics
Matches: 257, Mismatches: 40, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
180 2 0.01
181 254 0.99
182 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (181 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGCAACTTCAGGAAA
ATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAACTTATAGCTTC
AATCTGTTCCACTACAACTTCAGAGAAATAAGATCTGCTATCTTCAGTCTG
Found at i:37204708 original size:129 final size:130
Alignment explanation
Indices: 37204519--37204766 Score: 311
Period size: 129 Copynumber: 1.9 Consensus size: 130
37204509 TTGAATCTGT
* * * * *
37204519 TCTACTACAACTTCAGAGAAATAAGATCTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
1 TCTACTACAACCTCAGAGAAATAAGATCTGCTAGCTTCAATCTACTCCACTACAACTTCAGGGAG
* *
37204584 ATAAGACTTGTAACTTTAACCT-ATTCCACTGTAACTTCAGGGAGATAAGGTTTGATATGATTTG
66 ATAAGACTTGTAACTTCAACCTGATT-CACTGCAACTTCAGGGAGATAAGGTTTGATATGATTTG
37204648 C
130 C
* * * *
37204649 TCTACTGCAACCTCAGAGAGATAAGATTTG-TAGCTTCAATCTACTCCACTATAACTTCAGGGAG
1 TCTACTACAACCTCAGAGAAATAAGATCTGCTAGCTTCAATCTACTCCACTACAACTTCAGGGAG
* * * ** * *
37204713 ATAGGATTTGTAGCTTCAATTTGCTTTACTGCAACTTCAGGGAGATAAGGTTTG
66 ATAAGACTTGTAACTTCAACCTGATTCACTGCAACTTCAGGGAGATAAGGTTTG
37204767 TGGCTTTAGT
Statistics
Matches: 99, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
129 71 0.72
130 28 0.28
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (130 bp):
TCTACTACAACCTCAGAGAAATAAGATCTGCTAGCTTCAATCTACTCCACTACAACTTCAGGGAG
ATAAGACTTGTAACTTCAACCTGATTCACTGCAACTTCAGGGAGATAAGGTTTGATATGATTTGC
Found at i:37206269 original size:53 final size:52
Alignment explanation
Indices: 37206189--37206323 Score: 180
Period size: 53 Copynumber: 2.6 Consensus size: 52
37206179 TCAAATACCC
* *
37206189 TTTGGTCTCAAAGCGCCCTTCGCGGGTTTTCACCTTGGCCTCTCCTTTTTTTT
1 TTTGGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGCCTCT-CTTTTTTTT
* * *
37206242 TTTGGACTCAAAGCTCCCTTTGCGGGTTTTCGCCTTGGTCTCTCTTTTTTTT
1 TTTGGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCTTTTTTTT
*** *
37206294 TCAAGACTCGAAGCGCCCTTTGCGGGTTTT
1 TTTGGACTCAAAGCGCCCTTTGCGGGTTTT
37206324 TGCCTTGGTA
Statistics
Matches: 72, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
52 34 0.47
53 38 0.53
ACGTcount: A:0.10, C:0.27, G:0.21, T:0.42
Consensus pattern (52 bp):
TTTGGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCTTTTTTTT
Found at i:37206313 original size:52 final size:53
Alignment explanation
Indices: 37206195--37206332 Score: 188
Period size: 52 Copynumber: 2.6 Consensus size: 53
37206185 ACCCTTTGGT
* * * ***
37206195 CTCAAAGCGCCCTTCGCGGGTTTTCACCTTGGCCTCTCCTTTTTTTTTTTGGA
1 CTCAAAGCGCCCTTTGCGGGTTTTCGCCTTGGTCTCTCCTTTTTTTTTCAAGA
*
37206248 CTCAAAGCTCCCTTTGCGGGTTTTCGCCTTGGTCTCT-CTTTTTTTTTCAAGA
1 CTCAAAGCGCCCTTTGCGGGTTTTCGCCTTGGTCTCTCCTTTTTTTTTCAAGA
* *
37206300 CTCGAAGCGCCCTTTGCGGGTTTTTGCCTTGGT
1 CTCAAAGCGCCCTTTGCGGGTTTTCGCCTTGGT
37206333 ACCTTCTCCT
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
52 42 0.56
53 33 0.44
ACGTcount: A:0.09, C:0.28, G:0.21, T:0.41
Consensus pattern (53 bp):
CTCAAAGCGCCCTTTGCGGGTTTTCGCCTTGGTCTCTCCTTTTTTTTTCAAGA
Found at i:37215785 original size:16 final size:16
Alignment explanation
Indices: 37215748--37215790 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
37215738 TAATGTATTA
* *
37215748 AATAAAA-ATGATTTT
1 AATAAAATATTATCTT
37215763 AATTAAAATATTATCTT
1 AA-TAAAATATTATCTT
37215780 AATAAAATATT
1 AATAAAATATT
37215791 TATACTTCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 2 0.08
16 14 0.58
17 8 0.33
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (16 bp):
AATAAAATATTATCTT
Found at i:37215983 original size:32 final size:32
Alignment explanation
Indices: 37215931--37215993 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
37215921 TCATAAATTT
* *
37215931 ATAAATTGATTACTTGAATTTAATAACTCATG
1 ATAAATTAATTAATTGAATTTAATAACTCATG
* * *
37215963 ATAAATTAATTAATTTAATTTGATAATTCAT
1 ATAAATTAATTAATTGAATTTAATAACTCAT
37215994 TTTTTTTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.44
Consensus pattern (32 bp):
ATAAATTAATTAATTGAATTTAATAACTCATG
Found at i:37216366 original size:25 final size:25
Alignment explanation
Indices: 37216332--37216406 Score: 150
Period size: 25 Copynumber: 3.0 Consensus size: 25
37216322 AGATAAATAG
37216332 AGGATTGAGTATAAAATTTTTATCA
1 AGGATTGAGTATAAAATTTTTATCA
37216357 AGGATTGAGTATAAAATTTTTATCA
1 AGGATTGAGTATAAAATTTTTATCA
37216382 AGGATTGAGTATAAAATTTTTATCA
1 AGGATTGAGTATAAAATTTTTATCA
37216407 TTTCGTAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (25 bp):
AGGATTGAGTATAAAATTTTTATCA
Found at i:37223078 original size:51 final size:50
Alignment explanation
Indices: 37222863--37223205 Score: 324
Period size: 51 Copynumber: 6.8 Consensus size: 50
37222853 TTTTTATCAT
*
37222863 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AGTTT-
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTA
* *
37222911 TAC-AGTTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
1 T-CGA-TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAG-TTTA
* * *
37222963 TGGCT-CACGTAGTAGCCTTCACATAGTACTACATACGTGACCAAAGCTTT-
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTA
* * * * * * *
37223013 CCGGTATC-CATAGTAGCCTTCACTTAGTACCACACATGTAACCATAGTTTA
1 TCGATA-CACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AGTTTA
* * ** *
37223064 TCGATACACGTAGTAGCTTTCACACAGTACTACACACGTG-CTCAAAACTTC
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGAC-C-AAGTTTA
* * * *
37223115 TCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTA-TTTA
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA--AGTTTA
*
37223166 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTG
37223206 TTCATCAATA
Statistics
Matches: 238, Mismatches: 40, Indels: 31
0.77 0.13 0.10
Matches are distributed among these distances:
48 2 0.01
49 39 0.16
50 46 0.19
51 146 0.61
52 5 0.02
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (50 bp):
TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTA
Found at i:37223095 original size:102 final size:103
Alignment explanation
Indices: 37222863--37223205 Score: 427
Period size: 102 Copynumber: 3.4 Consensus size: 103
37222853 TTTTTATCAT
* * * * * *
37222863 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC--AGTTTTACAGT-TCACGTAG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTCCGGTATCACATAG
* * *
37222925 TAGCCTTCACATAGTACTACACACGTGATCA-AGTTTTA
66 TAGCCTTCACTTAGTACTACACATGTGACCATAG-TTTA
* * * *
37222963 TGGCT-CACGTAGTAGCCTTCACATAGTACTACATACGTGACCAAAGCTTTCCGGTATC-CATAG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTCCGGTATCACATAG
* *
37223026 TAGCCTTCACTTAGTACCACACATGTAACCATAGTTTA
66 TAGCCTTCACTTAGTACTACACATGTGACCATAGTTTA
* *
37223064 TCGATACACGTAGTAGCTTTCACACAGTACTACACACGTG-CTCAAAAC-TTCTCGGTA-CACAT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGAC-CAAAGCTTTC-CGGTATCACAT
37223126 AGTAGCCTTCACTTAGTACTACACATGTGACCATTA-TTTA
64 AGTAGCCTTCACTTAGTACTACACATGTGACCA-TAGTTTA
37223166 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
37223206 TTCATCAATA
Statistics
Matches: 212, Mismatches: 22, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
99 35 0.17
100 3 0.01
101 50 0.24
102 122 0.58
103 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (103 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTCCGGTATCACATAG
TAGCCTTCACTTAGTACTACACATGTGACCATAGTTTA
Found at i:37232859 original size:40 final size:43
Alignment explanation
Indices: 37232703--37232880 Score: 111
Period size: 40 Copynumber: 4.3 Consensus size: 43
37232693 GGAGCAGCAT
* * *
37232703 TAGCGGCGTTTTTCCCATAAACACCA-CGAAAGG-TAAAGA-AA
1 TAGCGGCGTTTTTCCCATAAACA-TAGCAAAAGGTTAAAAACAA
* ** * *** *
37232744 TATCAACG-TTTTCCCCTAAACGCCGCTAAAGGTATAACAAA-AA
1 TAGCGGCGTTTTTCCCATAAACATAGCAAAAGGT-TAA-AAACAA
* * * * *
37232787 TAGCGGCATTTTTCCCATAAACGTTGCGAAAGG-T-AAAGCAA
1 TAGCGGCGTTTTTCCCATAAACATAGCAAAAGGTTAAAAACAA
* *
37232828 TAGCGGCGTTTTT-GCATAAACATAGCAAAAGGTTAAAAACGA
1 TAGCGGCGTTTTTCCCATAAACATAGCAAAAGGTTAAAAACAA
37232870 TAGCGGCGTTT
1 TAGCGGCGTTT
37232881 GTAACACCCC
Statistics
Matches: 105, Mismatches: 24, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
39 1 0.01
40 35 0.33
41 21 0.20
42 20 0.19
43 8 0.08
44 20 0.19
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (43 bp):
TAGCGGCGTTTTTCCCATAAACATAGCAAAAGGTTAAAAACAA
Found at i:37233733 original size:41 final size:41
Alignment explanation
Indices: 37233676--37233778 Score: 197
Period size: 41 Copynumber: 2.5 Consensus size: 41
37233666 AAAACAGATT
37233676 CACCGGCATTTAGCCTGCTAGGCTTAAAGCCTGATTCAGTA
1 CACCGGCATTTAGCCTGCTAGGCTTAAAGCCTGATTCAGTA
37233717 CACCGGCATTTAGCCTGCTAGGCTTAAAGCCTGATTCAGTA
1 CACCGGCATTTAGCCTGCTAGGCTTAAAGCCTGATTCAGTA
*
37233758 CACCGTCATTTAGCCTGCTAG
1 CACCGGCATTTAGCCTGCTAG
37233779 ACATTTAGTC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (41 bp):
CACCGGCATTTAGCCTGCTAGGCTTAAAGCCTGATTCAGTA
Found at i:37233843 original size:41 final size:40
Alignment explanation
Indices: 37233674--37233883 Score: 163
Period size: 41 Copynumber: 5.1 Consensus size: 40
37233664 TAAAAACAGA
* * * *
37233674 TTCACCGGCATTTAGCCTGCTAGGCTTAAAGCCTGATTCAG
1 TTCACCGGCATTTAGCCTGCTAGACGTAAAGTCTGATT-AC
* * * * *
37233715 TACACCGGCATTTAGCCTGCTAGGCTTAAAGCCTGATTCAG
1 TTCACCGGCATTTAGCCTGCTAGACGTAAAGTCTGATT-AC
* * * ** *
37233756 TACACCGTCATTTAGCCTGCTAGACATTTAGTCCGAAATGTA-
1 TTCACCGGCATTTAGCCTGCTAGACGTAAAGTCTG--AT-TAC
*
37233798 -TCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAC
1 TTCACCGGCATTTAGCCTGCTAGACGTAAAGTCTG-ATTAC
** *
37233838 TTCACCGGCATCAAGCCTGCTAGACGTAAAGTTTGTATTAC
1 TTCACCGGCATTTAGCCTGCTAGACGTAAAGTCTG-ATTAC
37233879 ATTCA
1 -TTCA
37233884 ACCACCTTAT
Statistics
Matches: 145, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
39 2 0.01
40 3 0.02
41 132 0.91
42 4 0.03
43 3 0.02
44 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (40 bp):
TTCACCGGCATTTAGCCTGCTAGACGTAAAGTCTGATTAC
Found at i:37235165 original size:13 final size:13
Alignment explanation
Indices: 37235147--37235172 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37235137 CAATCAAATG
37235147 CACACAAAATAAT
1 CACACAAAATAAT
37235160 CACACAAAATAAT
1 CACACAAAATAAT
37235173 ATTAATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (13 bp):
CACACAAAATAAT
Found at i:37240968 original size:43 final size:44
Alignment explanation
Indices: 37240860--37240968 Score: 109
Period size: 43 Copynumber: 2.5 Consensus size: 44
37240850 TATGTGTTTT
* *
37240860 CATGTAAGACCACTTCTGGGA-AGTTGGCATCAACTTATGTTTA
1 CATGTAAGACCACTTCTGGGACAGTTGGCATCAACTTATGATCA
* * * *
37240903 CCTGTAAGACC-CTTTCTAGGACAG-TGGCATCGA-TCTGTGATCA
1 CATGTAAGACCAC-TTCTGGGACAGTTGGCATCAACT-TATGATCA
*
37240946 CATGTAAGACCACGTCTGGGACA
1 CATGTAAGACCACTTCTGGGACA
37240969 TTGACATTGT
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
42 2 0.04
43 48 0.91
44 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (44 bp):
CATGTAAGACCACTTCTGGGACAGTTGGCATCAACTTATGATCA
Found at i:37244991 original size:152 final size:151
Alignment explanation
Indices: 37244716--37245014 Score: 544
Period size: 152 Copynumber: 2.0 Consensus size: 151
37244706 TGCAAAATGA
37244716 GCTTAGTGTGACTTGAATGTTGATTCAGAGCTTCTAGTTGATGCTGAGGATTTTTGAGATTCAGA
1 GCTTAGTGTGACTTGAATGTTGATTCAGAGCTTCTAGTTGATGCTGAGGATTTTTGAGATTCAGA
* ** *
37244781 AACTGATTATGTGTTTTGAAAAATTTAGAGTTAGTTCAGATGATATTGAATGAAGCTCATAATAG
66 AACCGATTATGTGTTTCAAAAAATTTAGAGTTAATTCAGATGATATTGAATGAAGCTCATAATAG
37244846 TCGATTATCTATTTATCCGGG
131 TCGATTATCTATTTATCCGGG
*
37244867 GCTTAGTGTGACTTGAATGTTGATTCAGAGTTTCTAGTTGATGCTGAGGATTGTTTGAGATTCAG
1 GCTTAGTGTGACTTGAATGTTGATTCAGAGCTTCTAGTTGATGCTGAGGATT-TTTGAGATTCAG
37244932 AAACCGATTATGTGTTTCAAAAAATTTAGAGTTAATTCAGATGATATTGAATGAAGCTCATAATA
65 AAACCGATTATGTGTTTCAAAAAATTTAGAGTTAATTCAGATGATATTGAATGAAGCTCATAATA
37244997 GTCGATTATCTATTTATC
130 GTCGATTATCTATTTATC
37245015 TGGGTAGTAC
Statistics
Matches: 142, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
151 51 0.36
152 91 0.64
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.38
Consensus pattern (151 bp):
GCTTAGTGTGACTTGAATGTTGATTCAGAGCTTCTAGTTGATGCTGAGGATTTTTGAGATTCAGA
AACCGATTATGTGTTTCAAAAAATTTAGAGTTAATTCAGATGATATTGAATGAAGCTCATAATAG
TCGATTATCTATTTATCCGGG
Found at i:37247601 original size:43 final size:43
Alignment explanation
Indices: 37247548--37247663 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
37247538 TATGTGTTTT
* *
37247548 CATGTAAGACCACTTCTGGGAAGTTGGCATCAA-CTTATGTTTA
1 CATGTAAGACCACTTCTGGGAAGTTGGCATCAATC-TATGATCA
* * *
37247591 CCTGTAAGACC-CTTTCTGGGACAG-TGGCATCGATCTGTGATCA
1 CATGTAAGACCAC-TTCTGGGA-AGTTGGCATCAATCTATGATCA
* *
37247634 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CATGTAAGACCACTTCTGGGAAGTTGGCAT
37247664 TGTACGGGCT
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.03
43 54 0.90
44 4 0.07
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (43 bp):
CATGTAAGACCACTTCTGGGAAGTTGGCATCAATCTATGATCA
Found at i:37259090 original size:49 final size:49
Alignment explanation
Indices: 37258920--37259105 Score: 196
Period size: 50 Copynumber: 3.8 Consensus size: 49
37258910 TTATGAAAGG
* * * **
37258920 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGACACGAGAAC
*** * * *
37258970 TCCCCCATAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGACACGAGAAC
* *
37259020 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-GTACACGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACG-ACACGAGAAC
*
37259068 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37259106 TGTTATTATT
Statistics
Matches: 115, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
48 4 0.03
49 38 0.33
50 73 0.63
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGACACGAGAAC
Found at i:37260492 original size:13 final size:13
Alignment explanation
Indices: 37260474--37260498 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37260464 ATACAATTGA
37260474 TAATGAATAAAGC
1 TAATGAATAAAGC
37260487 TAATGAATAAAG
1 TAATGAATAAAG
37260499 GAAATAGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.16, T:0.24
Consensus pattern (13 bp):
TAATGAATAAAGC
Found at i:37265085 original size:13 final size:14
Alignment explanation
Indices: 37265051--37265088 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
37265041 TATATATAGC
37265051 TAATATGAAAGGAA
1 TAATATGAAAGGAA
* *
37265065 TCATATGAAATG-A
1 TAATATGAAAGGAA
37265078 TAATATGAAAG
1 TAATATGAAAG
37265089 AAACTAGTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.53, C:0.03, G:0.18, T:0.26
Consensus pattern (14 bp):
TAATATGAAAGGAA
Found at i:37275641 original size:23 final size:23
Alignment explanation
Indices: 37275623--37275673 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
37275613 TCATTAGGAT
* * *
37275623 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACGAC
*
37275646 TGTAATACCCCAAAAATTACTAC
1 TGTAATACCCCAAAAATTACGAC
37275669 TGTAA
1 TGTAA
37275674 GAAAGTAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACGAC
Found at i:37278800 original size:158 final size:158
Alignment explanation
Indices: 37278512--37278830 Score: 557
Period size: 158 Copynumber: 2.0 Consensus size: 158
37278502 TCACCAATAC
* *
37278512 AAGTATAGTTAAGATTAGTGCAAGATAGGGTTAAATTTTAAAAAGATGACCATATGGCTTATGAT
1 AAGTATAGTTAAGATTAGTGCAAGATAGGGTAAAATTTTAAAAAGATGACAATATGGCTTATGAT
*
37278577 GTAGGTAAATAGAAATAGAATAAGCTATATGGCTCAAACTAAGGTTTCAAGGGTTAAAGTCATAT
66 GTAGGTAAATAGAAATAAAATAAGCTATATGGCTCAAACTAAGGTTTCAAGGGTTAAAGTCATAT
37278642 GGTAGGCTTGAAAGGCTCAAACGATCCA
131 GGTAGGCTTGAAAGGCTCAAACGATCCA
*
37278670 AAGTATAGTTAAGATTAGTGCAAGATAGGGTAAAATTTTAGAAAGATGACAATATGGCTTATGAT
1 AAGTATAGTTAAGATTAGTGCAAGATAGGGTAAAATTTTAAAAAGATGACAATATGGCTTATGAT
* * * *
37278735 GTAGGTAAATAGCAATAAAATAGGCTATATGGGTCAAACTAAGGTTTCAAGGGTTAAATTCATAT
66 GTAGGTAAATAGAAATAAAATAAGCTATATGGCTCAAACTAAGGTTTCAAGGGTTAAAGTCATAT
*
37278800 GGTAGGCTTGAAAGGCTTAAACGATCCA
131 GGTAGGCTTGAAAGGCTCAAACGATCCA
37278828 AAG
1 AAG
37278831 AAAATGTGCT
Statistics
Matches: 152, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
158 152 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (158 bp):
AAGTATAGTTAAGATTAGTGCAAGATAGGGTAAAATTTTAAAAAGATGACAATATGGCTTATGAT
GTAGGTAAATAGAAATAAAATAAGCTATATGGCTCAAACTAAGGTTTCAAGGGTTAAAGTCATAT
GGTAGGCTTGAAAGGCTCAAACGATCCA
Found at i:37282708 original size:13 final size:12
Alignment explanation
Indices: 37282679--37282712 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
37282669 TTGCCTTATT
37282679 TTTACTTAATTTA
1 TTTA-TTAATTTA
37282692 TTTATTAATTTA
1 TTTATTAATTTA
37282704 CTTTATTAA
1 -TTTATTAA
37282713 CCTTTAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTATTAATTTA
Found at i:37286747 original size:196 final size:196
Alignment explanation
Indices: 37286401--37286794 Score: 689
Period size: 196 Copynumber: 2.0 Consensus size: 196
37286391 TATTTTTTAC
* * *
37286401 CTGCCAGTCGGTCCAACATCTGATCCATAAAAGGTAGCAGAAAATGATCCATTCGAGTGGCATTG
1 CTGCCAGTCGATCCAACATCTAATCCATAAAAGGCAGCAGAAAATGATCCATTCGAGTGGCATTG
37286466 TTCAATTTTCTGTAGTCAATACAAATTCTCCAACCCATGACCGACCTCATTGAGATTAACTCATT
66 TTCAATTTTCTGTAGTCAATACAAATTCTCCAACCCATGACCGACCTCATTGAGATTAACTCATT
*
37286531 ATGTTCATCACCACAATCATAATTCCACCCTTCTTTGGTTCACACTGTACCGGACTTACCAATGA
131 ATGTTCATCACCACAATCATAATTCCACCCTTCTTTGGTACACACTGTACCGGACTTACCAATGA
37286596 A
196 A
*
37286597 CTGCTAGTCGATCCAACATCTAATCCATAAAAGGCAGCAGAAAATGATCCATTCGAGTGGCATTG
1 CTGCCAGTCGATCCAACATCTAATCCATAAAAGGCAGCAGAAAATGATCCATTCGAGTGGCATTG
* * * *
37286662 TTCAATTTTCTGTATTCTATACAAATTCTCCAACCCGTGACCGACCTCATTGAGATTAACTCGTT
66 TTCAATTTTCTGTAGTCAATACAAATTCTCCAACCCATGACCGACCTCATTGAGATTAACTCATT
* *
37286727 ATGTTCATCTCCATAATCATAATTCCACCCTTCTTTGGTACACACTGTACCGGACTTACCAATGA
131 ATGTTCATCACCACAATCATAATTCCACCCTTCTTTGGTACACACTGTACCGGACTTACCAATGA
37286792 A
196 A
37286793 CT
1 CT
37286795 ATCTAAGATG
Statistics
Matches: 187, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
196 187 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (196 bp):
CTGCCAGTCGATCCAACATCTAATCCATAAAAGGCAGCAGAAAATGATCCATTCGAGTGGCATTG
TTCAATTTTCTGTAGTCAATACAAATTCTCCAACCCATGACCGACCTCATTGAGATTAACTCATT
ATGTTCATCACCACAATCATAATTCCACCCTTCTTTGGTACACACTGTACCGGACTTACCAATGA
A
Done.