Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 128 of 208
Found at i:39210715 original size:74 final size:75
Alignment explanation
Indices: 39210561--39210718 Score: 169
Period size: 74 Copynumber: 2.1 Consensus size: 75
39210551 TTTAGCTCTT
* * * * * *
39210561 ATGAGCATCTCGTTATATGGCTCTCACGAGCTTTCCGATACTTGGCTCTCATGAGCTTCCCGATT
1 ATGAGCTTCTCATTATATGGCTCTCACGAGCTTCCCGATAATTGGCTCGCAAGAGCTTCCCGATT
** *
39210626 AATGACTCTC
66 AACAACTCAC
* * *
39210636 TTGAGCTTCTCATT-TATGGCTCGT-ATGAGCTTCCCGATAATTGTCTCGCAAGAGCTTCCCG-T
1 ATGAGCTTCTCATTATATGGCTC-TCACGAGCTTCCCGATAATTGGCTCGCAAGAGCTTCCCGAT
39210698 TATACAACTCAC
65 TA-ACAACTCAC
39210710 ATGAGCTTC
1 ATGAGCTTC
39210719 CCGTTATACA
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
73 3 0.04
74 53 0.78
75 12 0.18
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (75 bp):
ATGAGCTTCTCATTATATGGCTCTCACGAGCTTCCCGATAATTGGCTCGCAAGAGCTTCCCGATT
AACAACTCAC
Found at i:39210722 original size:25 final size:25
Alignment explanation
Indices: 39210687--39210742 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
39210677 TGTCTCGCAA
39210687 GAGCTTCCCGTTATACAACTCACAT
1 GAGCTTCCCGTTATACAACTCACAT
*
39210712 GAGCTTCCCGTTATACAACTTACAT
1 GAGCTTCCCGTTATACAACTCACAT
39210737 GAGCTT
1 GAGCTT
39210743 TCTATTACAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (25 bp):
GAGCTTCCCGTTATACAACTCACAT
Found at i:39213277 original size:269 final size:273
Alignment explanation
Indices: 39212725--39213284 Score: 848
Period size: 274 Copynumber: 2.1 Consensus size: 273
39212715 TATTTTGTGA
* *
39212725 AAATGAAAAAG-TGAAAGGATAGAAGCAATAGGGAGGTAGGGACGGAAAAGGGTGGTGAAAGCTT
1 AAAT-AAAAAGATGAAAAGATAAAAGCAATAGGGAGGTAGGGACGGAAAAGGGTGGTGAAAGCTT
* *
39212789 GGTCAACTGTGACTAGGTTCAATGAACCACAATAAAATGCAAGATATAAAGTTTTGACAAGGGAG
65 GGTCAACTGTGACTAGGTTCAATGAACCACAATAAAATGCAAGATATAAAGTATTGACAAGAGAG
** *
39212854 GGAGACATGAAGTGAAATGAGGATCATGTTACCTCAACATATGGTAAGTTTGACTCATAAAGAAG
130 GGAGACATGAAGTGAAATGAGGA-CATCCTACCTCAACAGATGGTAAGTTTGACTCATAAAGAAG
* * *
39212919 GAAAGGAATCCTTCTAAAGATGGTAACAATGGGGTGGACGACAAGCACATTATGCACAAGGACAT
194 GAAAGGAATCCTCCTAAAGATGGTAACAATGGGGTGGACAACAAGCACATTATGCACAAGGAAAT
*
39212984 TGTGTTTAAAAAATT
259 TGTGTTAAAAAAATT
*
39212999 AAATAAAAAGATGAAAAGATAAAAGTAATAGGGAGGTAGGGACGGAAAAGGGTGGTGAAAGCTTG
1 AAATAAAAAGATGAAAAGATAAAAGCAATAGGGAGGTAGGGACGGAAAAGGGTGGTGAAAGCTTG
* * *
39213064 GTTAACTGTGAGTAGGTTTAATGAACCACAATAAAATGCAAGATATAAAGTATTGACAAGAGAGG
66 GTCAACTGTGACTAGGTTCAATGAACCACAATAAAATGCAAGATATAAAGTATTGACAAGAGAGG
*
39213129 GA-AGCATGGAGTGAAATG-GAGA-ATCCT-CCT-AA-AGATGGTAAGTTTGACTCATAAAG-AG
131 GAGA-CATGAAGTGAAATGAG-GACATCCTACCTCAACAGATGGTAAGTTTGACTCATAAAGAAG
* * *
39213187 AGAAATGAATCCTCCTAAAGATGGTAACAATGGGGTGGACAACAAGCACATTATGCATATGGAAA
194 -GAAAGGAATCCTCCTAAAGATGGTAACAATGGGGTGGACAACAAGCACATTATGCACAAGGAAA
39213252 TTGTGTTAAAAAAATT
258 TTGTGTTAAAAAAATT
39213268 AAATAAAAAGATGAAAA
1 AAATAAAAAGATGAAAA
39213285 CAAGGGAGAC
Statistics
Matches: 263, Mismatches: 19, Indels: 13
0.89 0.06 0.04
Matches are distributed among these distances:
268 2 0.01
269 113 0.43
270 2 0.01
271 3 0.01
272 3 0.01
273 8 0.03
274 132 0.50
ACGTcount: A:0.42, C:0.10, G:0.26, T:0.21
Consensus pattern (273 bp):
AAATAAAAAGATGAAAAGATAAAAGCAATAGGGAGGTAGGGACGGAAAAGGGTGGTGAAAGCTTG
GTCAACTGTGACTAGGTTCAATGAACCACAATAAAATGCAAGATATAAAGTATTGACAAGAGAGG
GAGACATGAAGTGAAATGAGGACATCCTACCTCAACAGATGGTAAGTTTGACTCATAAAGAAGGA
AAGGAATCCTCCTAAAGATGGTAACAATGGGGTGGACAACAAGCACATTATGCACAAGGAAATTG
TGTTAAAAAAATT
Found at i:39213844 original size:21 final size:21
Alignment explanation
Indices: 39213820--39213893 Score: 89
Period size: 21 Copynumber: 3.5 Consensus size: 21
39213810 GCCTAGAACA
39213820 GGTTATAAAATAACAAGAAAG
1 GGTTATAAAATAACAAGAAAG
*
39213841 GGTTA-AAAA-AAGAGACGAAAAG
1 GGTTATAAAATAACA-A-G-AAAG
39213863 GGTTATAAAATAACAAGAAAG
1 GGTTATAAAATAACAAGAAAG
*
39213884 GGTTAAAAAA
1 GGTTATAAAA
39213894 AGAGACGAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
19 3 0.07
20 5 0.11
21 19 0.42
22 10 0.22
23 5 0.11
24 3 0.07
ACGTcount: A:0.58, C:0.04, G:0.22, T:0.16
Consensus pattern (21 bp):
GGTTATAAAATAACAAGAAAG
Found at i:39213868 original size:43 final size:43
Alignment explanation
Indices: 39213820--39213909 Score: 180
Period size: 43 Copynumber: 2.1 Consensus size: 43
39213810 GCCTAGAACA
39213820 GGTTATAAAATAACAAGAAAGGGTTAAAAAAAGAGACGAAAAG
1 GGTTATAAAATAACAAGAAAGGGTTAAAAAAAGAGACGAAAAG
39213863 GGTTATAAAATAACAAGAAAGGGTTAAAAAAAGAGACGAAAAG
1 GGTTATAAAATAACAAGAAAGGGTTAAAAAAAGAGACGAAAAG
39213906 GGTT
1 GGTT
39213910 TTTTTAGAGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.56, C:0.04, G:0.24, T:0.16
Consensus pattern (43 bp):
GGTTATAAAATAACAAGAAAGGGTTAAAAAAAGAGACGAAAAG
Found at i:39213903 original size:21 final size:22
Alignment explanation
Indices: 39213837--39213909 Score: 98
Period size: 22 Copynumber: 3.4 Consensus size: 22
39213827 AAATAACAAG
39213837 AAAGGGTTAAAAAAAGAGACGA
1 AAAGGGTTAAAAAAAGAGACGA
*
39213859 AAAGGGTTATAAAATAACA-A-G-
1 AAAGGGTTA-AAAA-AAGAGACGA
39213880 AAAGGGTTAAAAAAAGAGACGA
1 AAAGGGTTAAAAAAAGAGACGA
39213902 AAAGGGTT
1 AAAGGGTT
39213910 TTTTTAGAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
19 3 0.07
20 5 0.11
21 10 0.23
22 18 0.41
23 5 0.11
24 3 0.07
ACGTcount: A:0.56, C:0.04, G:0.26, T:0.14
Consensus pattern (22 bp):
AAAGGGTTAAAAAAAGAGACGA
Found at i:39227872 original size:21 final size:20
Alignment explanation
Indices: 39227816--39227872 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 20
39227806 AAGTTTAAGT
*
39227816 TTTAATGTCAAACTTCAATGA
1 TTTAAT-TCAAATTTCAATGA
***
39227837 TTTAAGTTGTTATTTCAATGCA
1 TTTAA-TTCAAATTTCAATG-A
39227859 TTTAATTCAAATTT
1 TTTAATTCAAATTT
39227873 ACTATTTTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
21 20 0.74
22 7 0.26
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47
Consensus pattern (20 bp):
TTTAATTCAAATTTCAATGA
Found at i:39235398 original size:24 final size:24
Alignment explanation
Indices: 39235347--39235399 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
39235337 AGTGGTCAAT
* *
39235347 TCTACTTCTACATCTACTATTAGG
1 TCTACTTCTACATCTACTACTAGA
* * *
39235371 TCTACTTCTCCATCTACTGCTATA
1 TCTACTTCTACATCTACTACTAGA
39235395 TCTAC
1 TCTAC
39235400 AGCTAAGTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.23, C:0.30, G:0.06, T:0.42
Consensus pattern (24 bp):
TCTACTTCTACATCTACTACTAGA
Found at i:39245318 original size:25 final size:26
Alignment explanation
Indices: 39245270--39245325 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
39245260 ATTGTAAATT
*
39245270 TTGAAAAATATGAAATATGGAATGAA
1 TTGAAAAATATGAAATATGAAATGAA
* * *
39245296 TTGAAAAATA-GAAGTATTAAATGGA
1 TTGAAAAATATGAAATATGAAATGAA
39245321 TTGAA
1 TTGAA
39245326 TTTGTAATGC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.52, C:0.00, G:0.20, T:0.29
Consensus pattern (26 bp):
TTGAAAAATATGAAATATGAAATGAA
Found at i:39256525 original size:22 final size:22
Alignment explanation
Indices: 39256497--39256558 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
39256487 TCTCCGATTA
*
39256497 TTAGCACCTTAGTGCTTTCCAT
1 TTAGCACCTTAGTGCTCTCCAT
* * **
39256519 TTAGCACATTTGTGCTCTCTGT
1 TTAGCACCTTAGTGCTCTCCAT
* *
39256541 ATAGCACCTTAGTACTCT
1 TTAGCACCTTAGTGCTCT
39256559 TTGTTCATTA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (22 bp):
TTAGCACCTTAGTGCTCTCCAT
Found at i:39258390 original size:16 final size:16
Alignment explanation
Indices: 39258369--39258401 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
39258359 ATTTCTGGTA
*
39258369 ACAACAGAAATTGAAT
1 ACAACAGAAATCGAAT
39258385 ACAACAGAAATCGAAT
1 ACAACAGAAATCGAAT
39258401 A
1 A
39258402 AATTCTATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (16 bp):
ACAACAGAAATCGAAT
Found at i:39258582 original size:78 final size:78
Alignment explanation
Indices: 39258417--39258703 Score: 366
Period size: 78 Copynumber: 3.7 Consensus size: 78
39258407 TATTGAATGG
* *
39258417 CAGGAA-AAGAATCCTAAAACAGAATTATTCAATTGA-TTTCTGTTTGAAACAAAAAAAACCAAA
1 CAGGAATAA-AATCCTAAAACAGAATTGTTCAATTGATTTTCTGTTTGAAAC---AAAAATCAAA
* *
39258480 CAAATCTTGTTAAATGA
62 CAAATCCTGTTAAACGA
* *
39258497 TAGGAATAAAATCCTGAAACA-AATTTGTTCAATTGATTTTCTGTTTGAAACAAAAATCAAACAA
1 CAGGAATAAAATCCTAAAACAGAA-TTGTTCAATTGATTTTCTGTTTGAAACAAAAATCAAACAA
39258561 ATCCTGTTAAACGA
65 ATCCTGTTAAACGA
* * * *
39258575 CAGGAATAAAATCCTAAAACAGGATTGTTTAATTGATTTTCTATTTGAAACAAAAATTAAACAAA
1 CAGGAATAAAATCCTAAAACAGAATTGTTCAATTGATTTTCTGTTTGAAACAAAAATCAAACAAA
* *
39258640 TCCTATTAAACAA
66 TCCTGTTAAACGA
* * *
39258653 CAGGAAT-AAATCCTGAAACAGGATTGTTCAATTGAATTTCTGTTTGAAACA
1 CAGGAATAAAATCCTAAAACAGAATTGTTCAATTGATTTTCTGTTTGAAACA
39258704 GAATACAATT
Statistics
Matches: 185, Mismatches: 18, Indels: 11
0.86 0.08 0.05
Matches are distributed among these distances:
77 40 0.22
78 99 0.54
79 3 0.02
80 27 0.15
81 16 0.09
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.30
Consensus pattern (78 bp):
CAGGAATAAAATCCTAAAACAGAATTGTTCAATTGATTTTCTGTTTGAAACAAAAATCAAACAAA
TCCTGTTAAACGA
Found at i:39258701 original size:155 final size:156
Alignment explanation
Indices: 39258417--39258703 Score: 384
Period size: 155 Copynumber: 1.8 Consensus size: 156
39258407 TATTGAATGG
*
39258417 CAGGAAAAGAATCCTAAAACAGAATTATTCAATTGATTTCTGTTTGAAACAAAAAAAACCAAACA
1 CAGGAAAAGAATCCTAAAACAGAATTATTCAATTGATTTCTATTTGAAAC--AAAAAACCAAACA
* * ** * *
39258482 AATCTTGTTAAATGATAGGAATAAAATCCTGAAACAAATTTGTTCAATTGATTTTCTGTTTGAAA
64 AATCCTATTAAACAACAGGAATAAAATCCTGAAACAAATTTGTTCAATTGAATTTCTGTTTGAAA
39258547 CAAAAATCAAACAAATCCTGTTAAACGA
129 CAAAAATCAAACAAATCCTGTTAAACGA
* * * **
39258575 CAGGAATAA-AATCCTAAAACAGGATTGTTTAATTGATTTTCTATTTGAAAC-AAAAATTAAACA
1 CAGGAA-AAGAATCCTAAAACAGAATTATTCAATTGA-TTTCTATTTGAAACAAAAAACCAAACA
*
39258638 AATCCTATTAAACAACAGGAAT-AAATCCTGAAACAGGA-TTGTTCAATTGAATTTCTGTTTGAA
64 AATCCTATTAAACAACAGGAATAAAATCCTGAAACA-AATTTGTTCAATTGAATTTCTGTTTGAA
39258701 ACA
128 ACA
39258704 GAATACAATT
Statistics
Matches: 113, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
155 40 0.35
156 28 0.25
158 30 0.27
159 15 0.13
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.30
Consensus pattern (156 bp):
CAGGAAAAGAATCCTAAAACAGAATTATTCAATTGATTTCTATTTGAAACAAAAAACCAAACAAA
TCCTATTAAACAACAGGAATAAAATCCTGAAACAAATTTGTTCAATTGAATTTCTGTTTGAAACA
AAAATCAAACAAATCCTGTTAAACGA
Found at i:39264460 original size:2 final size:2
Alignment explanation
Indices: 39264410--39264447 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
39264400 TCTTATACTT
39264410 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
39264448 CACACTTATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:39264559 original size:2 final size:2
Alignment explanation
Indices: 39264552--39264585 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
39264542 TAACATACGC
39264552 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
39264586 ATTTTATTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:39268496 original size:15 final size:17
Alignment explanation
Indices: 39268463--39268514 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 17
39268453 AAAATTATGC
39268463 TTTC-CATCC-TTCAAGT
1 TTTCTCATCCTTTCAA-T
39268479 TTTCT-A-CCTTTCAAT
1 TTTCTCATCCTTTCAAT
*
39268494 TTT-TCATCCTTCCAAT
1 TTTCTCATCCTTTCAAT
39268510 TTTCT
1 TTTCT
39268515 TTCCACTCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
14 1 0.03
15 7 0.23
16 21 0.70
17 1 0.03
ACGTcount: A:0.17, C:0.29, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTCTCATCCTTTCAAT
Found at i:39270084 original size:9 final size:9
Alignment explanation
Indices: 39270067--39270099 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
39270057 ATATACATAC
39270067 TTATATATT
1 TTATATATT
*
39270076 TTTTATATT
1 TTATATATT
39270085 TTATA-ATT
1 TTATATATT
39270093 TTATATA
1 TTATATA
39270100 CGTATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTATATATT
Found at i:39270148 original size:30 final size:31
Alignment explanation
Indices: 39270091--39270149 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
39270081 TATTTTATAA
* *
39270091 TTTTATATACGTATATATATACATACACATC
1 TTTTATATACGTATATAGACACATACACATC
* *
39270122 TTTTATA-ATGTATATAGACACGTACACA
1 TTTTATATACGTATATAGACACATACACA
39270150 CACAATTGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (31 bp):
TTTTATATACGTATATAGACACATACACATC
Found at i:39270593 original size:12 final size:13
Alignment explanation
Indices: 39270571--39270599 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
39270561 TTTTTATAAT
39270571 TTTATTTTATTTA
1 TTTATTTTATTTA
39270584 TTTA-TTTATTTA
1 TTTATTTTATTTA
39270596 TTTA
1 TTTA
39270600 CATTTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:39276002 original size:50 final size:50
Alignment explanation
Indices: 39275946--39276534 Score: 583
Period size: 50 Copynumber: 11.8 Consensus size: 50
39275936 TTTGGCATTA
** * * * *
39275946 CAGTGGAACGGATTGAAGTTACAACAGCGAATCTTACTCCCCTGGCGGTG
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCAGTG
* * * * * * *
39275996 CAGTGGAACAGATTGAAGCTACAACAGTGAATTTTGCTTCCCTGACATTG
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCAGTG
** * * *
39276046 CAGTTAAATAGATTGAAGCTACGACAGCGAATCTTACTTCCCTGGCGGTG
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCAGTG
* ** * * *
39276096 CAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTG
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCAGTG
** * * *
39276146 CAGTTAAATAGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTG
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCAGTG
* * * * * *
39276196 CAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCAGTG
* ** * * *
39276246 CTGTTAAATAGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTG
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCAGTG
* * * * *
39276296 CAGTGGAATAGATTAAAGCTACAACGGTGAATCTTGCTTCTCC-GACATTG
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTC-CCTGGCAGTG
** * * * *
39276346 CAGTTAAATAGATTGAAGCTACGACAGCAAATCTTACTTCCCTGGCGGTG
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCAGTG
* * * *
39276396 CAGTGGAACAGATTGAAGCTACAACGGCAAATCTTACTTCCCTGACATTG
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCAGTG
** * * *
39276446 CAGTTAAACAGATTGAAGCTACGACAGCGAA---TACTTCCCTGGCAGTG
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCAGTG
*
39276493 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCC
1 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCC
39276535 CGACATTGCA
Statistics
Matches: 427, Mismatches: 107, Indels: 10
0.78 0.20 0.02
Matches are distributed among these distances:
47 40 0.09
49 2 0.00
50 383 0.90
51 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (50 bp):
CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCAGTG
Found at i:39276137 original size:100 final size:100
Alignment explanation
Indices: 39275956--39276605 Score: 902
Period size: 100 Copynumber: 6.6 Consensus size: 100
39275946 CAGTGGAACG
* * *
39275956 GATTGAAGTTACAACAGCGAATCTTACTCCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
1 GATTGAAGCTACAACAGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* * * *
39276021 AGTGAATTTTGCTTCCCTGACATTGCAGTTAAATA
66 GGCGAATCTTGCTTCCCCGACATTGCAGTTAAATA
* * *
39276056 GATTGAAGCTACGACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTGAAGCTACAAC
1 GATTGAAGCTACAACAGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* *
39276121 GGTGAATCTTGTTTCCCCGACATTGCAGTTAAATA
66 GGCGAATCTTGCTTCCCCGACATTGCAGTTAAATA
* * *
39276156 GATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAT
1 GATTGAAGCTACAACAGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
*
39276221 GGCGAATCTTGCTTCCCCGACATTGCTGTTAAATA
66 GGCGAATCTTGCTTCCCCGACATTGCAGTTAAATA
* * * *
39276256 GATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTAAAGCTACAAC
1 GATTGAAGCTACAACAGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* *
39276321 GGTGAATCTTGCTTCTCCGACATTGCAGTTAAATA
66 GGCGAATCTTGCTTCCCCGACATTGCAGTTAAATA
*
39276356 GATTGAAGCTACGACAGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
1 GATTGAAGCTACAACAGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* * * *
39276421 GGCAAATCTTACTTCCCTGACATTGCAGTTAAACA
66 GGCGAATCTTGCTTCCCCGACATTGCAGTTAAATA
* * * *
39276456 GATTGAAGCTACGACAGCGAA---TACTTCCCTGGCAGTGCAGTGGAATAGATTGAAGCTACAAC
1 GATTGAAGCTACAACAGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
*
39276518 GGCGAATCTTGCTTCCCCGACATTGCACTTAAATA
66 GGCGAATCTTGCTTCCCCGACATTGCAGTTAAATA
* * ** * *
39276553 GATTGAAG--ATAAC-G--AATCTTATTTCCCTGAAGTTGCAATGGAACAGATTGAAG
1 GATTGAAGCTACAACAGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
39276606 TTATAAATTA
Statistics
Matches: 496, Mismatches: 51, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
92 2 0.00
94 1 0.00
95 30 0.06
97 77 0.16
100 386 0.78
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (100 bp):
GATTGAAGCTACAACAGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
GGCGAATCTTGCTTCCCCGACATTGCAGTTAAATA
Found at i:39278860 original size:12 final size:13
Alignment explanation
Indices: 39278838--39278866 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
39278828 TTTTTATAAT
39278838 TTTATTTTATTTA
1 TTTATTTTATTTA
39278851 TTTA-TTTATTTA
1 TTTATTTTATTTA
39278863 TTTA
1 TTTA
39278867 CATTTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:39278923 original size:27 final size:27
Alignment explanation
Indices: 39278892--39278949 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
39278882 TTTGAAAGAA
39278892 TGTTTTAATTTTATTTGCTTATATACT
1 TGTTTTAATTTTATTTGCTTATATACT
*
39278919 TGTTTTAATTTTATTTGCTTATATATT
1 TGTTTTAATTTTATTTGCTTATATACT
39278946 TGTT
1 TGTT
39278950 ATTTTGTACG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.21, C:0.05, G:0.09, T:0.66
Consensus pattern (27 bp):
TGTTTTAATTTTATTTGCTTATATACT
Found at i:39281138 original size:21 final size:21
Alignment explanation
Indices: 39281112--39281151 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
39281102 TAGAAAATTG
*
39281112 ATAATTGAGTGAAAGAAAACA
1 ATAATTAAGTGAAAGAAAACA
39281133 ATAATTAAGTGAAAGAAAA
1 ATAATTAAGTGAAAGAAAA
39281152 AGAATGATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (21 bp):
ATAATTAAGTGAAAGAAAACA
Found at i:39299517 original size:21 final size:20
Alignment explanation
Indices: 39299490--39299545 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 20
39299480 AACAATATTT
39299490 TTTAATATTTAAATATTTAA
1 TTTAATATTTAAATATTTAA
* *
39299510 TATTAATATTTTTTAATTTTTAA
1 T-TTAATA--TTTAAATATTTAA
39299533 TTTAA-ATTTAAAT
1 TTTAATATTTAAAT
39299546 TTAATAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
19 6 0.20
20 1 0.03
21 7 0.23
22 4 0.13
23 12 0.40
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTAATATTTAAATATTTAA
Found at i:39300670 original size:40 final size:40
Alignment explanation
Indices: 39300614--39300692 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
39300604 AGTGGGTGTC
*
39300614 TATTAGGATAAAAAGTTTGATATATTTTAGGACTCTAATT
1 TATTAGGATAAAAAGTTTGATATATTTTAAGACTCTAATT
*
39300654 TATTAGGATAAGAAGTTTGATATATTTTAAGACTCTAAT
1 TATTAGGATAAAAAGTTTGATATATTTTAAGACTCTAAT
39300693 ATTCGTTAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (40 bp):
TATTAGGATAAAAAGTTTGATATATTTTAAGACTCTAATT
Found at i:39310978 original size:6 final size:6
Alignment explanation
Indices: 39310967--39311020 Score: 108
Period size: 6 Copynumber: 9.0 Consensus size: 6
39310957 CGAAATGCTG
39310967 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
39311015 AAAATA
1 AAAATA
39311021 GGGGGTTTAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:39318629 original size:25 final size:25
Alignment explanation
Indices: 39318595--39318645 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
39318585 GAAAGTAGGC
39318595 AATAAATGTATCAATCCCGACTTTA
1 AATAAATGTATCAATCCCGACTTTA
39318620 AATAAATGTATCAATCCCGACTTTA
1 AATAAATGTATCAATCCCGACTTTA
39318645 A
1 A
39318646 CTTGAACAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (25 bp):
AATAAATGTATCAATCCCGACTTTA
Found at i:39320232 original size:694 final size:695
Alignment explanation
Indices: 39318890--39323073 Score: 7119
Period size: 694 Copynumber: 6.0 Consensus size: 695
39318880 CCCTGATTCT
39318890 CACCTGGACC-TAAAGAAAACAAACAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGCGA
1 CACCTGG-CCATAAAGAAAACAAACAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGCGA
* *
39318954 AAATTTGATGGGCGTTAAAACCACCAAAAATAAATTCCTACGACGAGATAATAGTAAATGGTAGT
65 AAATTTGATGGGCGTTAAAACCACCAAAAATAAATTCCTACGACAAAATAATAGTAAATGGTAGT
**
39319019 ATAAAGTAGTAGGGTTGAATCCATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAAT
130 ATAAAGTAGTAGGGTCAAATCCATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAAT
*
39319084 CGCTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCATAGAAATGTTGAAAATAAAAATAAAAAT
195 CGCTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTGAAAATAAAAATAAAAAT
* * * *
39319149 GGAGGGTTTAAATTGATTAAGATAATAAAATAAATAAATACAAAAAATAAAATAAATTAAAAACA
260 GGAGGGTTTAAATTGATTAAGATAATAAAATAAAGAAATACGAAAAATAAAATAAAATAAAAATA
* *
39319214 GATTCGAAAATGCAAAACTAAATTTAAGAAAATAAAACAAATGGATAAAT-AAATTTTTTTTTAA
325 GATTCGAAAATGCAAAAATAAATTTAAGAAAATAAAACAAATGGATAAATAAAATATTTTTTTAA
*
39319278 GCTTAGCCTTACCCTCGGTGTACTCCAATCTTGAATCGATCCTTAAAATAGATTTTCCCTTCCTA
390 GCTTAGCCTTAGCCTCGGTGTACTCCAATCTTGAATCGATCCTTAAAATAGATTTTCCCTTCCTA
* * *
39319343 GCAATAAGCTGGTTATAGCAACCAAGAACGTCTCGATCACCAAATTTTCCTTATGTAGTCAATCT
455 GCAATAAGCTGGTTATAGCGACCAAGAACGTCCCGATCGCCAAATTTTCCTTATGTAGTCAATCT
*
39319408 CGGTACGACCTGCAAACTGACTCTTTCCAAATTTCTAACTGCGATACACGTGTTCACAATTTAAG
520 CGGTACGACCTGCAAACTGACTCTTGCCAAATTTCTAACTGCGATACACGTGTTCACAATTTAAG
* ** *
39319473 ATTTCGACAGCCTTGCGATCTGAAAAACCCAACTCGAATCAACGGCGTCAACTGCGTGGGTCATT
585 ATTTCGACAGCCTTGCGATCTGAAAAACCCAACTCGAATCAACGGCCTCAACCACGTGAGTCATT
39319538 TAAATTTGATCTCTATCTCTCTTGACGGAATCCAACTGGCTTTTCC
650 TAAATTTGATCTCTATCTCTCTTGACGGAATCCAACTGGCTTTTCC
39319584 CACCTGGCCATAAAGAAAACAAACAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGCGAA
1 CACCTGGCCATAAAGAAAACAAACAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGCGAA
* *
39319649 AATTTGATGGGCGTTAAAACCATCAAAAATAAATTCCTATGACAAAATAATAGTAAATGGTAGTA
66 AATTTGATGGGCGTTAAAACCACCAAAAATAAATTCCTACGACAAAATAATAGTAAATGGTAGTA
* **
39319714 TAAAGTAGTAGGATCGGATCCATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAATC
131 TAAAGTAGTAGGGTCAAATCCATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAATC
*
39319779 GCTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTGAAAATAAAAATAAAAATA
196 GCTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTGAAAATAAAAATAAAAATG
39319844 GAGGGTTTAAATTGATTAAGATAATAAAATAAAGAAATACGAAAAATAAAATAAAATAAAAATAG
261 GAGGGTTTAAATTGATTAAGATAATAAAATAAAGAAATACGAAAAATAAAATAAAATAAAAATAG
*
39319909 ATTCGAAAATGAAAAAATAAATTTAAGAAAATAAAACAAATGGATAAATAAAATATTTTTTTAAG
326 ATTCGAAAATGCAAAAATAAATTTAAGAAAATAAAACAAATGGATAAATAAAATATTTTTTTAAG
* * * *
39319974 CTTAGCCTAAGCCTCGGTGTACTCTAATCTTGAATCGATCCTTATAATAGATTTTCTCTTCCTAG
391 CTTAGCCTTAGCCTCGGTGTACTCCAATCTTGAATCGATCCTTAAAATAGATTTTCCCTTCCTAG
* * * *
39320039 CAATAAGCTAGTTATAGTGACCAAGAACGTCCCGATCGGCAAATTTTCCTTATGTAGTCAATCTT
456 CAATAAGCTGGTTATAGCGACCAAGAACGTCCCGATCGCCAAATTTTCCTTATGTAGTCAATCTC
*
39320104 TGTACGACCTGCAAACTGACTCTTGCCAAATTTCTAACTGCGATACACGTGTTCACAATTTAAGA
521 GGTACGACCTGCAAACTGACTCTTGCCAAATTTCTAACTGCGATACACGTGTTCACAATTTAAGA
* *
39320169 TTTCAACAACCTTGCGATCTGAAAAACCCAACTCGAATCAACGGCCTCAACCAC-TGAGTCATTT
586 TTTCGACAGCCTTGCGATCTGAAAAACCCAACTCGAATCAACGGCCTCAACCACGTGAGTCATTT
* ** * *
39320233 AAATTTGATCTCTATCTTTCTTGGTGGAATCCAACTGGCTATTCT
651 AAATTTGATCTCTATCTCTCTTGACGGAATCCAACTGGCTTTTCC
* ** * * * * *
39320278 TACCTGATCACAAGGAAAACAAATAAAAATTAGAAAATTTCACCAATTCCTGGCATTGGCGGGAA
1 CACCTGGCCATAAAGAAAACAAACAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGCGAA
39320343 AATTTGATGGGCGTTAAAACCACCAAAAATAAATTCCTACGACAAAATAATAGTAAATGGTAGTA
66 AATTTGATGGGCGTTAAAACCACCAAAAATAAATTCCTACGACAAAATAATAGTAAATGGTAGTA
* *
39320408 TAAAGTAGTAGGGTCAAATCCATAGGGATTGGCTATCTAATTTAAGTTTTTTCGTGACCAGAATC
131 TAAAGTAGTAGGGTCAAATCCATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAATC
39320473 GCTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTGAAAATAAAAATAAAAATG
196 GCTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTGAAAATAAAAATAAAAATG
39320538 GAGGGTTTAAATTGATTAAGATAATAAAATAAAGAAATACGAAAAATAAAATAAAATAAAAATAG
261 GAGGGTTTAAATTGATTAAGATAATAAAATAAAGAAATACGAAAAATAAAATAAAATAAAAATAG
39320603 ATTCGAAAATGCAAAAATAAATTTAAGAAAATAAAACAAATGGATAAATAAAATA-TTTTTTAAG
326 ATTCGAAAATGCAAAAATAAATTTAAGAAAATAAAACAAATGGATAAATAAAATATTTTTTTAAG
*
39320667 CTTAGCCTAAGCCTCGGTGTACTCCAATCTTGAATCGATCCTTAAAATAGATTTTCCCTTCCTAG
391 CTTAGCCTTAGCCTCGGTGTACTCCAATCTTGAATCGATCCTTAAAATAGATTTTCCCTTCCTAG
* ** *
39320732 CAATAAGCTTGTTATAGCGACCAAGAACGTCTAGATCGCCAAATTTTCCTTACGTAGTCAATCTC
456 CAATAAGCTGGTTATAGCGACCAAGAACGTCCCGATCGCCAAATTTTCCTTATGTAGTCAATCTC
39320797 GGTACGACCTGCAAACTGACTCTTGCCAAATTTCTAACTGCGATACACGTGTTCACAATTTAAGA
521 GGTACGACCTGCAAACTGACTCTTGCCAAATTTCTAACTGCGATACACGTGTTCACAATTTAAGA
39320862 TTTCGACAGCCTTGCGATCTGAAAAACCCAACTCGAATCAACGGCCTCAACCACGTGAGTCATTT
586 TTTCGACAGCCTTGCGATCTGAAAAACCCAACTCGAATCAACGGCCTCAACCACGTGAGTCATTT
39320927 AAATTTGATCTCTATCTCTCTTGACGGAATCCAACTGGCTTTTCC
651 AAATTTGATCTCTATCTCTCTTGACGGAATCCAACTGGCTTTTCC
* *
39320972 CA-CTCGGTCATAAAGAAAACAAATAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGCGA
1 CACCT-GGCCATAAAGAAAACAAACAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGCGA
39321036 AAATTTGATGGGCGTTAAAACCACCAAAAATAAATTCCTACGACAAAATAATAGTAAATGGTAGT
65 AAATTTGATGGGCGTTAAAACCACCAAAAATAAATTCCTACGACAAAATAATAGTAAATGGTAGT
*
39321101 ATAAAGTAGTAGGGTCAAATCTATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAAT
130 ATAAAGTAGTAGGGTCAAATCCATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAAT
*
39321166 CGTTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTGAAAATAAAAATAAAAAT
195 CGCTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTGAAAATAAAAATAAAAAT
* *
39321231 GGAGGGTTTAACTTGATTAAGATAATAAAATAAAGAAATATGAAAAATAAAATAAAATAAAATAA
260 GGAGGGTTTAAATTGATTAAGATAATAAAATAAAGAAATACG----A-AAAATAAAATAAAATAA
*
39321296 AAATAGATTCGAAAATGAAAAAATAAATTTAAGAAAATAAAACAAATGGATAAAT--AA-ATTTT
320 AAATAGATTCGAAAATGCAAAAATAAATTTAAGAAAATAAAACAAATGGATAAATAAAATATTTT
* *
39321358 TTTAAGCTTAGCCTTACCCTCGGTGTACTCCAATCTTGAATCGTTCCTTAAAATAGATTTTCCCT
385 TTTAAGCTTAGCCTTAGCCTCGGTGTACTCCAATCTTGAATCGATCCTTAAAATAGATTTTCCCT
* * *
39321423 TCCTAGCAATAAGCTGGTTATAGCAACCAAGAACGTCCCGATCACCAAATTTTCCTTATATAGTC
450 TCCTAGCAATAAGCTGGTTATAGCGACCAAGAACGTCCCGATCGCCAAATTTTCCTTATGTAGTC
* *
39321488 AATCTCGGTACGACCTGCAAACTGACTCTTTCCAAATTTCTAACTGCGCTACACGTGTTCACAAT
515 AATCTCGGTACGACCTGCAAACTGACTCTTGCCAAATTTCTAACTGCGATACACGTGTTCACAAT
* * ** *
39321553 TTAAGATTTTGACAGCCTTGCGATCTGAAAAACCCAACTCGAATCAACGGCGTCAACTGCGTGGG
580 TTAAGATTTCGACAGCCTTGCGATCTGAAAAACCCAACTCGAATCAACGGCCTCAACCACGTGAG
**
39321618 TCATTTAAATTTGATCTCTATCTCTCTTGACAAAATCCAACTGGCTTTTCC
645 TCATTTAAATTTGATCTCTATCTCTCTTGACGGAATCCAACTGGCTTTTCC
39321669 CACCTGGCCATAAAGAAAACAAACAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGCGAA
1 CACCTGGCCATAAAGAAAACAAACAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGCGAA
*
39321734 AATTTGATGGGCGTTAAAACCATCAAAAATAAATTCCTACGACAAAATAATAGTAAATGGTAGTA
66 AATTTGATGGGCGTTAAAACCACCAAAAATAAATTCCTACGACAAAATAATAGTAAATGGTAGTA
* *
39321799 TAAAGTAGTAGGATCGAATCCATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAATC
131 TAAAGTAGTAGGGTCAAATCCATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAATC
39321864 GCTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTGAAAATAAAAATAAAAATG
196 GCTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTGAAAATAAAAATAAAAATG
* *
39321929 GAGGGTTTAAATTGATTAAGTTAATAAAATAAAGAAATACAAAAAATAAAATAAAATAAAATAAA
261 GAGGGTTTAAATTGATTAAGATAATAAAATAAAGAAATAC----GA-AAAATAAAATAAAATAAA
39321994 AATAGATTCGAAAATGCAAAAATAAATTTAAGAAAATAAAACAAATGGATAAATAAAATATTTTT
321 AATAGATTCGAAAATGCAAAAATAAATTTAAGAAAATAAAACAAATGGATAAATAAAATATTTTT
39322059 TTAAGCTTAGCCTTAGCCTCGGTGTACTCCAATCTTGAATCGATCCTTAAAATAGATTTTCCCTT
386 TTAAGCTTAGCCTTAGCCTCGGTGTACTCCAATCTTGAATCGATCCTTAAAATAGATTTTCCCTT
* * *
39322124 CCTAGCAATAAGCTGGTTATAGTGACCAAAAACGTCCCGATCGCCAAATTTTCCTTACGTAGTCA
451 CCTAGCAATAAGCTGGTTATAGCGACCAAGAACGTCCCGATCGCCAAATTTTCCTTATGTAGTCA
39322189 ATCTCGGTACGACCTGCAAACTGACTCTTGCCAAATTTCTAACTGCGATACACGTGTTCACAATT
516 ATCTCGGTACGACCTGCAAACTGACTCTTGCCAAATTTCTAACTGCGATACACGTGTTCACAATT
* *
39322254 TAAGATTTCGACAGCCTTGCGGTCTGAAAAACCCAACTCGAATCAACGGCCTCAACCATGTGAGT
581 TAAGATTTCGACAGCCTTGCGATCTGAAAAACCCAACTCGAATCAACGGCCTCAACCACGTGAGT
*
39322319 CATTTAAATCTGATCTCTATCTCTCTTGACGGAATCCAACTGGCTTTTCC
646 CATTTAAATTTGATCTCTATCTCTCTTGACGGAATCCAACTGGCTTTTCC
* * *
39322369 CACCTGGTCATAAAGAAAACAAATAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGAGAA
1 CACCTGGCCATAAAGAAAACAAACAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGCGAA
* *
39322434 AATTTGATAGGCGTTAAAACCACCAAAAATAAATTCCTACGAC-AAATAATTGTAAATGGTAGTA
66 AATTTGATGGGCGTTAAAACCACCAAAAATAAATTCCTACGACAAAATAATAGTAAATGGTAGTA
*
39322498 TAAAGTAGTAGGGTCAAATCCATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAATT
131 TAAAGTAGTAGGGTCAAATCCATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAATC
* *
39322563 GCTGTTGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTAAAAATAAAAAAAAAAATA
196 GCTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTGAAAAT------AAAAATA
* * *
39322628 AAAATGGAGGGTTTAAATTGATTACGATAATACAATAAATAAATACGAAAAATAAAATAAAATAA
255 AAAATGGAGGGTTTAAATTGATTAAGATAATAAAATAAAGAAATACGAAAAATAAAATAAAATAA
39322693 AAATAGATTC-AAGAATGCAAAAATAAATTTAAGAAAATAAAACAAATGGATAAATAAAAAATAT
320 AAATAGATTCGAA-AATGCAAAAATAAATTTAAGAAAATAAAACAAATGGATAAAT--AAAATAT
*
39322757 TTTTTTAAGCTTAACCTTAGCCTCGGTGTACTCCAATCTTGAATCGATCCTTAAAATAGATTTTC
382 TTTTTTAAGCTTAGCCTTAGCCTCGGTGTACTCCAATCTTGAATCGATCCTTAAAATAGATTTTC
* *
39322822 CCTTCCTAGCAATAAGCTGGTTATAGCGGCCAAGAACATCCCGATCGCCAAATTTTCCTTATGTA
447 CCTTCCTAGCAATAAGCTGGTTATAGCGACCAAGAACGTCCCGATCGCCAAATTTTCCTTATGTA
*
39322887 GTCAATCTCTGTACGACCTGCAAACTGACTCTTGCCAAATTTCTAACTGCGATACACGTGTTCAC
512 GTCAATCTCGGTACGACCTGCAAACTGACTCTTGCCAAATTTCTAACTGCGATACACGTGTTCAC
* **
39322952 AATTTAAGATTTCGACAGCCTTGCGATCTGAAAAACCCAGCTCGAATCAACGGCCTCAACCGTGT
577 AATTTAAGATTTCGACAGCCTTGCGATCTGAAAAACCCAACTCGAATCAACGGCCTCAACCACGT
* *
39323017 GGGTCATTTAAATTTGATCTCTATCTCTCTTAACGGAATCCAACTGGCTTTTCC
642 GAGTCATTTAAATTTGATCTCTATCTCTCTTGACGGAATCCAACTGGCTTTTCC
39323071 CAC
1 CAC
39323074 TTAGACACGC
Statistics
Matches: 3294, Mismatches: 169, Indels: 46
0.94 0.05 0.01
Matches are distributed among these distances:
693 249 0.08
694 1104 0.34
695 244 0.07
696 1 0.00
697 657 0.20
698 3 0.00
699 207 0.06
700 468 0.14
701 1 0.00
702 311 0.09
705 49 0.01
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (695 bp):
CACCTGGCCATAAAGAAAACAAACAAAAATTAGAAAATTTCACCAATTCCTGGCAATGGCGCGAA
AATTTGATGGGCGTTAAAACCACCAAAAATAAATTCCTACGACAAAATAATAGTAAATGGTAGTA
TAAAGTAGTAGGGTCAAATCCATAGGGATTGGCTATCTAATTTCACTTTTTTCGTGACCAGAATC
GCTGTCGTGGTCACAGTCGTGCCCACGACCTGTGCGTAGAAATGTTGAAAATAAAAATAAAAATG
GAGGGTTTAAATTGATTAAGATAATAAAATAAAGAAATACGAAAAATAAAATAAAATAAAAATAG
ATTCGAAAATGCAAAAATAAATTTAAGAAAATAAAACAAATGGATAAATAAAATATTTTTTTAAG
CTTAGCCTTAGCCTCGGTGTACTCCAATCTTGAATCGATCCTTAAAATAGATTTTCCCTTCCTAG
CAATAAGCTGGTTATAGCGACCAAGAACGTCCCGATCGCCAAATTTTCCTTATGTAGTCAATCTC
GGTACGACCTGCAAACTGACTCTTGCCAAATTTCTAACTGCGATACACGTGTTCACAATTTAAGA
TTTCGACAGCCTTGCGATCTGAAAAACCCAACTCGAATCAACGGCCTCAACCACGTGAGTCATTT
AAATTTGATCTCTATCTCTCTTGACGGAATCCAACTGGCTTTTCC
Found at i:39321298 original size:22 final size:22
Alignment explanation
Indices: 39321254--39321298 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
39321244 TGATTAAGAT
* *
39321254 AATAAAATAAAGAAATATGAAA
1 AATAAAATAAAGAAAAATAAAA
39321276 AATAAAATAAA-ATAAAATAAAA
1 AATAAAATAAAGA-AAAATAAAA
39321298 A
1 A
39321299 TAGATTCGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (22 bp):
AATAAAATAAAGAAAAATAAAA
Found at i:39322734 original size:20 final size:20
Alignment explanation
Indices: 39322686--39322734 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
39322676 AAAATAAAAT
*
39322686 AAAATAAAAATAGATTCAAG
1 AAAATAAAAATAAATTCAAG
*** *
39322706 AATGCAAAAATAAATTTAAG
1 AAAATAAAAATAAATTCAAG
39322726 AAAATAAAA
1 AAAATAAAA
39322735 CAAATGGATA
Statistics
Matches: 21, Mismatches: 8, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.67, C:0.04, G:0.08, T:0.20
Consensus pattern (20 bp):
AAAATAAAAATAAATTCAAG
Found at i:39323599 original size:13 final size:13
Alignment explanation
Indices: 39323581--39323636 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
39323571 TAGATTTTTC
39323581 CTAAATATTATCA
1 CTAAATATTATCA
*
39323594 CTAAATA--AT-T
1 CTAAATATTATCA
*
39323604 CTAAATATTACCA
1 CTAAATATTATCA
39323617 CTAAATATTATCA
1 CTAAATATTATCA
39323630 CTAAATA
1 CTAAATA
39323637 ATTCTAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
10 7 0.19
11 2 0.06
12 1 0.03
13 26 0.72
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:39326460 original size:20 final size:20
Alignment explanation
Indices: 39326435--39326474 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
39326425 AATGTAGATT
*
39326435 ACAAGGATGCCAGTGTATAA
1 ACAAGGATGCAAGTGTATAA
39326455 ACAAGGATGCAAGTGTATAA
1 ACAAGGATGCAAGTGTATAA
39326475 CAACTTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.20
Consensus pattern (20 bp):
ACAAGGATGCAAGTGTATAA
Found at i:39328278 original size:87 final size:87
Alignment explanation
Indices: 39328124--39328295 Score: 308
Period size: 87 Copynumber: 2.0 Consensus size: 87
39328114 CTTACTAGGG
*
39328124 GCCTTCTAATCATGGAAGGAAGAATGGGTTCCATGCCCCTCACATGTTCCCATTGCATAAGACCT
1 GCCTTCTAATCATGGAAGGAAGAATGGGTTCCATGCCCCTCACATGTTCCCATTGCATAAGAACT
39328189 ATACGCAAAAATTTAAAGATAT
66 ATACGCAAAAATTTAAAGATAT
* * *
39328211 GCCTTCTAATCATGGAAGGAAGAATGGGTTCCATGTCCCTCACATGTTCCCATTGTATAGGAACT
1 GCCTTCTAATCATGGAAGGAAGAATGGGTTCCATGCCCCTCACATGTTCCCATTGCATAAGAACT
39328276 ATACGCAAAAATTTAAAGAT
66 ATACGCAAAAATTTAAAGAT
39328296 GTCAAACATA
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (87 bp):
GCCTTCTAATCATGGAAGGAAGAATGGGTTCCATGCCCCTCACATGTTCCCATTGCATAAGAACT
ATACGCAAAAATTTAAAGATAT
Found at i:39331870 original size:298 final size:297
Alignment explanation
Indices: 39331211--39332068 Score: 1229
Period size: 298 Copynumber: 2.8 Consensus size: 297
39331201 AATTACAAAA
* * * * ***
39331211 GAATAAAAAGGAAAGCCATTTTCACCAGTAGTAACATGCAGAGTGAAGAAATAAAATAATTTTAG
1 GAATAAAAAGGAAGGCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAACGGTTTTAG
* * *
39331276 ATCCAAATTTGAGTAAAACCAAGTTCTTAGCAGAAATTATGCAAAACCCACATTAGAAATACAAT
66 ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGATATAC---
* *
39331341 TAATCATGTAGAGTCTCCAAGTACCAAGCAGAT-AAACTAATAACATAGAGATATGGTTTAAAGA
128 --A--ATGTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAGA
* *
39331405 AAACAAAAGCTACTAACCAATTAGCTCTGAACCAAAATTTACCCAAGACCAGCAAAAAAAATTTG
189 AAACAAAAGCTACTAACCAATTAGCTCTGAACCAAAACTTACCCAAGACCAGCAAAAAAAAATTG
39331470 CAAGGTAGTTCAACACAAAATCAAAAGTAAGAAAGAATAATCTG
254 CAAGGTAGTTCAACACAAAATCAAAAGTAAGAAAGAATAATCTG
* * *
39331514 GAATAAAAAGGAAGGCCCTTTTCACCAGCAATAACACGCAGAGCGAAAAAATAAAACGGTTTTAG
1 GAATAAAAAGGAAGGCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAACGGTTTTAG
39331579 ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGATATACAAT
66 ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGATATACAAT
* * * *
39331644 GTAGACTCTCAAAGTACCAAGCAGATAAAACTAATAACATAAAAATATAGTTTAAAGAATACAAA
131 GTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAGAAAACAAA
* * *
39331709 AGCTACTAACCAATTAGCT-TGAACCAAAACTTATCCAATACCAGCAAAAAGAAAGATTGGAAGG
196 AGCTACTAACCAATTAGCTCTGAACCAAAACTTACCCAAGACCAGCAAAAA-AAA-ATTGCAAGG
** *
39331773 T-GATTCGGCACAAAATCAACAA-TAAGAAAGAATAATTTG
259 TAG-TTCAACACAAAATCAA-AAGTAAGAAAGAATAATCTG
*
39331812 GAATAAAAAGGAAGGCCCTTTTCACTAGCAGTAACATGCAGAGCGAAGAAATAAAACGGTTTTAG
1 GAATAAAAAGGAAGGCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAACGGTTTTAG
*
39331877 ATCCAAATTTGAGTAAGACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAAT
66 ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAG--AT---A-
* * *
39331942 TAATAATGTAGAGTCTCCAAGTACTAAGCAGATAAAACTAATAACATAGAAATATAATTTAAAGA
125 T-ACAATGTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAGA
*
39332007 AAACAAAAGCTACTAACCAATTAGCTCTGAACTAAAACTTACCCAAGACCAGCAAAAAAAAA
189 AAACAAAAGCTACTAACCAATTAGCTCTGAACCAAAACTTACCCAAGACCAGCAAAAAAAAA
39332069 AAAGATACTG
Statistics
Matches: 500, Mismatches: 42, Indels: 25
0.88 0.07 0.04
Matches are distributed among these distances:
296 54 0.11
297 57 0.11
298 155 0.31
299 2 0.00
300 2 0.00
303 115 0.23
304 2 0.00
305 85 0.17
306 28 0.06
ACGTcount: A:0.47, C:0.17, G:0.14, T:0.21
Consensus pattern (297 bp):
GAATAAAAAGGAAGGCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAACGGTTTTAG
ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGATATACAAT
GTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAGAAAACAAA
AGCTACTAACCAATTAGCTCTGAACCAAAACTTACCCAAGACCAGCAAAAAAAAATTGCAAGGTA
GTTCAACACAAAATCAAAAGTAAGAAAGAATAATCTG
Found at i:39333577 original size:30 final size:30
Alignment explanation
Indices: 39333543--39333743 Score: 276
Period size: 30 Copynumber: 6.7 Consensus size: 30
39333533 GATAAGGTTA
39333543 CTCACACAAGCTGACATTATAATAGAATTG
1 CTCACACAAGCTGACATTATAATAGAATTG
* * *
39333573 CTCACACAAGTTGACATTATAATAGATTTT
1 CTCACACAAGCTGACATTATAATAGAATTG
* *
39333603 CTCACACAAGCTGATATTATAATAGAATTT
1 CTCACACAAGCTGACATTATAATAGAATTG
* * *
39333633 CTCACACAAGTTGACATTATAATTGATTTG
1 CTCACACAAGCTGACATTATAATAGAATTG
* * *
39333663 CTTACACAAGCTAACATTATAATAGAATTT
1 CTCACACAAGCTGACATTATAATAGAATTG
* *
39333693 CTCACACAAGTTGACATTATAATAGATTTG
1 CTCACACAAGCTGACATTATAATAGAATTG
*
39333723 CTCACAAAAGCTGACATTATA
1 CTCACACAAGCTGACATTATA
39333744 TCGAGATTAC
Statistics
Matches: 147, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 147 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (30 bp):
CTCACACAAGCTGACATTATAATAGAATTG
Found at i:39333610 original size:60 final size:60
Alignment explanation
Indices: 39333543--39333743 Score: 339
Period size: 60 Copynumber: 3.4 Consensus size: 60
39333533 GATAAGGTTA
* *
39333543 CTCACACAAGCTGACATTATAATAGAATTGCTCACACAAGTTGACATTATAATAGATTTT
1 CTCACACAAGCTGACATTATAATAGAATTTCTCACACAAGTTGACATTATAATAGATTTG
* *
39333603 CTCACACAAGCTGATATTATAATAGAATTTCTCACACAAGTTGACATTATAATTGATTTG
1 CTCACACAAGCTGACATTATAATAGAATTTCTCACACAAGTTGACATTATAATAGATTTG
* *
39333663 CTTACACAAGCTAACATTATAATAGAATTTCTCACACAAGTTGACATTATAATAGATTTG
1 CTCACACAAGCTGACATTATAATAGAATTTCTCACACAAGTTGACATTATAATAGATTTG
*
39333723 CTCACAAAAGCTGACATTATA
1 CTCACACAAGCTGACATTATA
39333744 TCGAGATTAC
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 130 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (60 bp):
CTCACACAAGCTGACATTATAATAGAATTTCTCACACAAGTTGACATTATAATAGATTTG
Found at i:39334152 original size:5 final size:5
Alignment explanation
Indices: 39334142--39334239 Score: 187
Period size: 5 Copynumber: 19.6 Consensus size: 5
39334132 GAGCACACAT
*
39334142 TAACA TAACA TAACA TAACA TAACA TAATA TAACA TAACA TAACA TAACA
1 TAACA TAACA TAACA TAACA TAACA TAACA TAACA TAACA TAACA TAACA
39334192 TAACA TAACA TAACA TAACA TAACA TAACA TAACA TAACA TAACA TAA
1 TAACA TAACA TAACA TAACA TAACA TAACA TAACA TAACA TAACA TAA
39334240 AGTAGTAAGT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 91 1.00
ACGTcount: A:0.60, C:0.18, G:0.00, T:0.21
Consensus pattern (5 bp):
TAACA
Found at i:39334971 original size:15 final size:15
Alignment explanation
Indices: 39334953--39335015 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
39334943 TTATATACTT
*
39334953 TTAACTAAAACTTAA
1 TTAATTAAAACTTAA
* * * *
39334968 TTAATCATAATTTAT
1 TTAATTAAAACTTAA
*
39334983 TTAATTAAACCTTAA
1 TTAATTAAAACTTAA
39334998 TTAATTTAAAA-TTAA
1 TTAA-TTAAAACTTAA
39335013 TTA
1 TTA
39335016 TAATTAACCA
Statistics
Matches: 36, Mismatches: 11, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
15 31 0.86
16 5 0.14
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (15 bp):
TTAATTAAAACTTAA
Found at i:39335360 original size:19 final size:20
Alignment explanation
Indices: 39335312--39335360 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
39335302 TGTTACAAAG
*
39335312 ATTTTGGTATTTGGTTAGAA
1 ATTTTGGTATTTGATTAGAA
*
39335332 ATTATGGTATTT-ATTAGAA
1 ATTTTGGTATTTGATTAGAA
*
39335351 ATTTTAGTAT
1 ATTTTGGTAT
39335361 CGATTGAGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (20 bp):
ATTTTGGTATTTGATTAGAA
Found at i:39339213 original size:41 final size:41
Alignment explanation
Indices: 39339144--39339393 Score: 279
Period size: 41 Copynumber: 6.1 Consensus size: 41
39339134 AAACAAGTGC
* * * **
39339144 TTCAGGGGCACTAAAGTACAGACAGGGGCACGCATGTGCAA
1 TTCAGGGGTACCAAAGTACAAACAGGGGCACATATGTGCAA
* *
39339185 TTCGGGGGTACCAAAGTACAAACAGGGGCGCATATGTGCAA
1 TTCAGGGGTACCAAAGTACAAACAGGGGCACATATGTGCAA
* * **
39339226 TTCAGGGGTACCAAAGTACAAATATGGGCACATATGTGTTA
1 TTCAGGGGTACCAAAGTACAAACAGGGGCACATATGTGCAA
* *
39339267 TTCAAGGGG-GCCAAAGTACAAATAGGGGCA-ACTATGTGCAA
1 TTC-AGGGGTACCAAAGTACAAACAGGGGCACA-TATGTGCAA
* ** * *
39339308 TTCAAGGGTACTGAAGTACAAACAGGGGCACGTAAGTGCAA
1 TTCAGGGGTACCAAAGTACAAACAGGGGCACATATGTGCAA
* * *
39339349 TTTAGGGGTACCGAAGTACAAACAGGGGCACATATGTGTAA
1 TTCAGGGGTACCAAAGTACAAACAGGGGCACATATGTGCAA
39339390 TTCA
1 TTCA
39339394 AAAATATTCT
Statistics
Matches: 174, Mismatches: 31, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
40 5 0.03
41 164 0.94
42 5 0.03
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.20
Consensus pattern (41 bp):
TTCAGGGGTACCAAAGTACAAACAGGGGCACATATGTGCAA
Found at i:39366657 original size:44 final size:44
Alignment explanation
Indices: 39366541--39367354 Score: 839
Period size: 44 Copynumber: 18.4 Consensus size: 44
39366531 ACCGATATGG
* * * * *
39366541 GAAGACAAGATCTGCTATCTTTGATCTATTTCACTGCCAGTACAG
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCCAATACAT
* * *
39366586 GAAGATAAGATCTGCTATCTTCTATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* * * * ***
39366630 GAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCCAATACAT
* * * * * *
39366675 GAAGACAAGATCTGC-ATCTTCGATCCACTTCGCTACCAATATAG
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCCAATACAT
* * * *
39366719 GAAGACAGGATTTGCTATCTTCGATCTATTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* ***
39366763 GAAGACAAGATCTACTTTCTTCGATCTACTT--CGCCACAGTATGG
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCA-A-TACAT
* ** * * * *
39366807 GAAGACAAGATCTGC-ATCTTCGATCCGCTTCGCTACCAATATAG
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GCCAATACAT
*
39366851 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* * * * * * ***
39366895 TAAGACAAGATCTACTTTCATCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCCAATACAT
39366940 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
39366984 GAAGACAAGATCTG-TTGTCTTTGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTT-TCTTCGATCTACTTCACGCCAATACAT
* *
39367028 GAAGACAAGATTTGTTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* * ***
39367072 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGG
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCA-CGCCAATACAT
* * *
39367117 GAAGACAATATCTGCTATCTTCGATCTATTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
39367161 GAAGACAAGATCTGCTTTCTTTGATCTATTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
39367205 GAAGACAAGATCTGCTTTCTTTGATCTACTTCACACCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* * * ***
39367249 GAAGTA-AATATCTGCTTTCTTCGATCTACTTCACCACCAGTATGG
1 GAAG-ACAAGATCTGCTTTCTTCGATCTACTTCA-CGCCAATACAT
* * * *
39367294 GAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCACTACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
39367338 GAAGATAAGATCTGCTT
1 GAAGACAAGATCTGCTT
39367355 CTTTTTAATC
Statistics
Matches: 643, Mismatches: 110, Indels: 33
0.82 0.14 0.04
Matches are distributed among these distances:
42 5 0.01
43 16 0.02
44 428 0.67
45 191 0.30
46 3 0.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:39366757 original size:133 final size:134
Alignment explanation
Indices: 39366513--39367325 Score: 969
Period size: 133 Copynumber: 6.1 Consensus size: 134
39366503 AAGACTTGTA
* * *
39366513 TCTTCGATCTACTTCGCCACC-GATATGGGAAGACAAGATCTGCTATCTTTGATCTATTTCACTG
1 TCTTCGATCTACTTCGCCACCAG-TATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTA
* * *
39366577 CCAGTACAGGAAGATAAGATCTGCTATCTTCTATCTACTTCACGCCAATACATGAAGACAAGATC
65 CCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
39366642 TGCTT
130 TGCTT
* * *
39366647 TCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCGCTAC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTAC
* * * *
39366711 CAATATAGGAAGACAGGATTTGCTATCTTCGATCTATTTCACGCCAATACATGAAGACAAGATCT
66 CAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
*
39366776 ACTT
131 GCTT
** *
39366780 TCTTCGATCTACTTCGCCA-CAGTATGGGAAGACAAGATCTGC-ATCTTCGATCCGCTTCGCTAC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTAC
* *
39366843 CAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATTAAGACAAGATCT
66 CAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
*
39366908 ACTT
131 GCTT
* * *
39366912 TCATCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-GC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTAC
* * * * *
39366976 CAATACATGAAGACAAGATCTGTTGTCTTTGATCTACTTCACGCCAATACATGAAGACAAGATTT
66 CAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
*
39367041 GTTT
131 GCTT
* * * *** * *
39367045 TCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCAC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTAC
* ** * *
39367109 CAGTATGGGAAGACAATATCTGCTATCTTCGATCTATTTCACGCCAATACATGAAGACAAGATCT
66 CAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
39367174 GCTT
131 GCTT
* * * * * *** * *
39367178 TCTTTGATCTATTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCAC-AC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTAC
* * * * * ***
39367241 CAATACATGAAGTA-AATATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGAT
66 CAATACAGGAAG-ACAAGATCTGCTATCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGAT
* *
39367305 CTGGTA
129 CTGCTT
*
39367311 TCTTTGATCTACTTC
1 TCTTCGATCTACTTC
39367326 ACGCCACTAC
Statistics
Matches: 602, Mismatches: 71, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
132 201 0.33
133 346 0.57
134 54 0.09
135 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (134 bp):
TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTAC
CAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
GCTT
Found at i:39366946 original size:177 final size:176
Alignment explanation
Indices: 39366511--39367358 Score: 945
Period size: 177 Copynumber: 4.8 Consensus size: 176
39366501 ATAAGACTTG
* * *** * * * *
39366511 TATCTTCGATCTACTTCGCCACCGATATGGGAAGACAAGATCTGCTATCTTTGATCTATTTCACT
1 TATCTTCGATCTACTTC-ACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACC
* ** * *
39366576 GCCAGTACAGGAAGATAAGATCTGCTATCTTCTATCTACTTCACGCCAATACATGAAGACAAGAT
65 ACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTT-ACGCCAATACATGAAGACAAGAT
* * **
39366641 CTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGC
129 CTGCTTTCTTTGATCTACTTC-ACACCAATACAGGAAGACAAGATCTGC
* * * * * * * *
39366690 -ATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATTTGCTATCTTCGATCTATTTCA-C
1 TATCTTCGATCTACTTCAC-ACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACC
* * *** * * ***
39366753 GCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTT-CGCCACAGTATGGGAAGACAAGA
65 ACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTACGCCA-A-TACATGAAGACAAGA
* * ** * *
39366817 TCTGC-ATCTTCGATCCGCTTCGCTACCAATATAGGAAGACAAGATCTGC
128 TCTGCTTTCTTTGATCTACTTCAC-ACCAATACAGGAAGACAAGATCTGC
* * * * *
39366866 TATCTTCGATCTACTTCACGCCAATACATTAAGACAAGATCTACTTTCATCGATCTACTTCGCCA
1 TATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCA
*
39366931 CCAGTATGGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
66 CCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTT-ACGCCAATACATGAAGACAAGATC
* * * *
39366996 TG-TTGTCTTTGATCTACTTCACGCCAATACATGAAGACAAGATTTGT
130 TGCTT-TCTTTGATCTACTTCACACCAATACAGGAAGACAAGATCTGC
* *
39367043 TTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCA
1 TATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCA
* *
39367108 CCAGTATGGGAAGACAATATCTGCTATCTTCGATCTATTTCACGCCAATACATGAAGACAAGATC
66 CCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTT-ACGCCAATACATGAAGACAAGATC
* * *
39367173 TGCTTTCTTTGATCTATTTCACGCCAATACATGAAGACAAGATCTGC
130 TGCTTTCTTTGATCTACTTCACACCAATACAGGAAGACAAGATCTGC
* * *
39367220 TTTCTTTGATCTACTTCACACCAATACATGAAGTA-AATATCTGCTTTCTTCGATCTACTTCACC
1 TATCTTCGATCTACTTCACACCAATACATGAAG-ACAAGATCTGCTTTCTTCGATCTACTTCACC
* * * *
39367284 ACCAGTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCACTACATGAAGATAAGAT
65 ACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTT-ACGCCAATACATGAAGACAAGAT
39367349 CTGC-TTCTTT
129 CTGCTTTCTTT
39367359 TTAATCTGCT
Statistics
Matches: 581, Mismatches: 76, Indels: 27
0.85 0.11 0.04
Matches are distributed among these distances:
175 6 0.01
176 74 0.13
177 426 0.73
178 70 0.12
179 5 0.01
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (176 bp):
TATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCA
CCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTACGCCAATACATGAAGACAAGATCT
GCTTTCTTTGATCTACTTCACACCAATACAGGAAGACAAGATCTGC
Found at i:39368668 original size:20 final size:20
Alignment explanation
Indices: 39368645--39368689 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
39368635 TAGCCTCTCT
*
39368645 ATTTTACTTTTTCA-TTCTTC
1 ATTTTACATTTTCACTT-TTC
*
39368665 ATTTTTCATTTTCACTTTTC
1 ATTTTACATTTTCACTTTTC
39368685 ATTTT
1 ATTTT
39368690 TTTACGACTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTTTACATTTTCACTTTTC
Found at i:39368678 original size:13 final size:13
Alignment explanation
Indices: 39368652--39368689 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
39368642 TCTATTTTAC
39368652 TTTTTCATTCTTCA
1 TTTTTCATT-TTCA
39368666 TTTTTCATTTTCA
1 TTTTTCATTTTCA
*
39368679 CTTTTCATTTT
1 TTTTTCATTTT
39368690 TTTACGACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTTCATTTTCA
Found at i:39368690 original size:7 final size:7
Alignment explanation
Indices: 39368652--39368690 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
39368642 TCTATTTTAC
39368652 TTTTTCA
1 TTTTTCA
*
39368659 TTCTTCA
1 TTTTTCA
39368666 TTTTTCA
1 TTTTTCA
39368673 -TTTTCA
1 TTTTTCA
*
39368679 CTTTTCA
1 TTTTTCA
39368686 TTTTT
1 TTTTT
39368691 TTACGACTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 6 0.21
7 22 0.79
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTTTCA
Found at i:39368690 original size:20 final size:20
Alignment explanation
Indices: 39368653--39368690 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
39368643 CTATTTTACT
39368653 TTTTCATTCTTCATTTTTCA
1 TTTTCATTCTTCATTTTTCA
39368673 TTTTCACTT-TTCATTTTT
1 TTTTCA-TTCTTCATTTTT
39368691 TTACGACTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTCATTCTTCATTTTTCA
Found at i:39372071 original size:17 final size:17
Alignment explanation
Indices: 39372045--39372080 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
39372035 TTCTATGATG
*
39372045 AAATGCCATGCAGTCAA
1 AAATGCCATGCAGCCAA
*
39372062 AAATGTCATGCAGCCAA
1 AAATGCCATGCAGCCAA
39372079 AA
1 AA
39372081 CAAAACACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.22, G:0.17, T:0.17
Consensus pattern (17 bp):
AAATGCCATGCAGCCAA
Found at i:39376571 original size:23 final size:22
Alignment explanation
Indices: 39376544--39376595 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 22
39376534 TTGATACACA
39376544 TCTTTCTCATTTTCTCTTC-TTTT
1 TCTTTCTCATTTT-T-TTCATTTT
*
39376567 TCTTTTTTCATTTTTTTCATTTT
1 TC-TTTCTCATTTTTTTCATTTT
39376590 TCTTTC
1 TCTTTC
39376596 CTACCATGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 6 0.24
23 9 0.36
24 10 0.40
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (22 bp):
TCTTTCTCATTTTTTTCATTTT
Found at i:39377105 original size:19 final size:20
Alignment explanation
Indices: 39377062--39377107 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
39377052 AGTATGAACA
*
39377062 TTTTTATAATTTTTTTACAT
1 TTTTTATAATTTCTTTACAT
* *
39377082 ATTTTAT-ATTTCTTTACGT
1 TTTTTATAATTTCTTTACAT
39377101 TTTTTAT
1 TTTTTAT
39377108 GATATTGTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTTTATAATTTCTTTACAT
Found at i:39377214 original size:19 final size:18
Alignment explanation
Indices: 39377189--39377260 Score: 65
Period size: 19 Copynumber: 3.9 Consensus size: 18
39377179 ATTTATATAA
39377189 AATTTTATAATTTTTAAT
1 AATTTTATAATTTTTAAT
*
39377207 AATATTTA-AATATTTAAAT
1 AAT-TTTATAAT-TTTTAAT
* *
39377226 ATTTTTATTAAATTTTAAT
1 AATTTTA-TAATTTTTAAT
* *
39377245 TATTTTATAACTTTTA
1 AATTTTATAATTTTTA
39377261 TTTTTCTTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
18 18 0.42
19 23 0.53
20 2 0.05
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.58
Consensus pattern (18 bp):
AATTTTATAATTTTTAAT
Found at i:39377248 original size:20 final size:21
Alignment explanation
Indices: 39377212--39377250 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
39377202 TTAATAATAT
39377212 TTAAATATTTAAATATTTTTA
1 TTAAATATTTAAATATTTTTA
*
39377233 TTAAAT-TTTAATTATTTT
1 TTAAATATTTAAATATTTT
39377251 ATAACTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTAAATATTTAAATATTTTTA
Found at i:39377261 original size:28 final size:28
Alignment explanation
Indices: 39377130--39377262 Score: 94
Period size: 28 Copynumber: 4.6 Consensus size: 28
39377120 ACTTTATAAG
* * *
39377130 ATTTTATAATTTTTTTGCTATATTTCTATAT
1 ATTTTATAATTTTTAT--TAAATTT-TAAAT
*
39377161 ATTTTATAA-TTTT-TTAAGATTTATATAAA
1 ATTTTATAATTTTTATTAA-ATTT-TA-AAT
*
39377190 ATTTTATAATTTTTAAT-AATATTTAAAT
1 ATTTTATAATTTTTATTAAAT-TTTAAAT
* *
39377218 A-TTTAAATATTTTTATTAAATTTTAATT
1 ATTTTATA-ATTTTTATTAAATTTTAAAT
*
39377246 ATTTTATAACTTTTATT
1 ATTTTATAATTTTTATT
39377263 TTTCTTTTTA
Statistics
Matches: 83, Mismatches: 11, Indels: 19
0.73 0.10 0.17
Matches are distributed among these distances:
27 7 0.08
28 32 0.39
29 23 0.28
30 11 0.13
31 10 0.12
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (28 bp):
ATTTTATAATTTTTATTAAATTTTAAAT
Found at i:39378918 original size:23 final size:23
Alignment explanation
Indices: 39378875--39378918 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
39378865 AAAGGTTAAG
**
39378875 ATTTTGTTGAATTTTTTTATATT
1 ATTTTGTTGAATTTTCCTATATT
39378898 ATTTTG-TGAATTATTCCTATA
1 ATTTTGTTGAATT-TTCCTATA
39378919 AAATTTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.25, C:0.05, G:0.09, T:0.61
Consensus pattern (23 bp):
ATTTTGTTGAATTTTCCTATATT
Found at i:39385440 original size:30 final size:31
Alignment explanation
Indices: 39385404--39385466 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 31
39385394 GTGGAAAGGA
39385404 AAAGATCACTGAGTAGACGTCTTC-ATTCAT
1 AAAGATCACTGAGTAGACGTCTTCGATTCAT
39385434 AAAGATCACTGAGTAGACGTCTTCGATTCAT
1 AAAGATCACTGAGTAGACGTCTTCGATTCAT
39385465 AA
1 AA
39385467 CATCCATCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 24 0.75
31 8 0.25
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (31 bp):
AAAGATCACTGAGTAGACGTCTTCGATTCAT
Found at i:39385793 original size:35 final size:34
Alignment explanation
Indices: 39385745--39385916 Score: 98
Period size: 34 Copynumber: 5.0 Consensus size: 34
39385735 TTCACTAATC
* *
39385745 ATTTCGTCGGTTTATCCAACTAGCGTTGGGCGCA
1 ATTTCGTCAGTTTATCCAACTAGCGCTGGGCGCA
** * * *
39385779 ATTTCCGTCAGTTTATCTGAC-AGTGCTAGGCACA
1 ATTT-CGTCAGTTTATCCAACTAGCGCTGGGCGCA
* * *
39385813 CA-TTCGTCGGTTTATCCGACTAGCGCTGGGTGCA
1 -ATTTCGTCAGTTTATCCAACTAGCGCTGGGCGCA
* * * ** * *
39385847 ACTTCCGTCAGTTTGTCTAACTATTGCTGGACACA
1 A-TTTCGTCAGTTTATCCAACTAGCGCTGGGCGCA
* * * *
39385882 CATTT-ATCGGTTTATCTAACTAGCACTGGGCGCA
1 -ATTTCGTCAGTTTATCCAACTAGCGCTGGGCGCA
39385916 A
1 A
39385917 ACTCTTTCAC
Statistics
Matches: 100, Mismatches: 32, Indels: 13
0.69 0.22 0.09
Matches are distributed among these distances:
33 16 0.16
34 45 0.45
35 38 0.38
36 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (34 bp):
ATTTCGTCAGTTTATCCAACTAGCGCTGGGCGCA
Found at i:39385856 original size:68 final size:69
Alignment explanation
Indices: 39385747--39385916 Score: 218
Period size: 68 Copynumber: 2.5 Consensus size: 69
39385737 CACTAATCAT
* * *
39385747 TTCGTCGGTTTATCCAACTAGCGTTGGGCGCAATTTCCGTCAGTTTATCTGAC-AGTGCTAGG-C
1 TTCGTCGGTTTATCCAACTAGCGCTGGGCGCAACTTCCGTCAGTTTATCTAACTAGTGCT-GGAC
39385810 ACACA
65 ACACA
* * * *
39385815 TTCGTCGGTTTATCCGACTAGCGCTGGGTGCAACTTCCGTCAGTTTGTCTAACTATTGCTGGACA
1 TTCGTCGGTTTATCCAACTAGCGCTGGGCGCAACTTCCGTCAGTTTATCTAACTAGTGCTGGACA
39385880 CACA
66 CACA
** * *
39385884 TTTATCGGTTTATCTAACTAGCACTGGGCGCAA
1 TTCGTCGGTTTATCCAACTAGCGCTGGGCGCAA
39385917 ACTCTTTCAC
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
68 49 0.56
69 38 0.44
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.32
Consensus pattern (69 bp):
TTCGTCGGTTTATCCAACTAGCGCTGGGCGCAACTTCCGTCAGTTTATCTAACTAGTGCTGGACA
CACA
Found at i:39387372 original size:43 final size:43
Alignment explanation
Indices: 39387324--39387486 Score: 254
Period size: 43 Copynumber: 3.8 Consensus size: 43
39387314 GCGTCGCTAA
39387324 CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCAGGAC
* * *
39387367 CTTTAGCGACGCTTTTCCCACAAACGCCATTAAAGACTAGGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCAGGAC
* * *
39387410 CTTTAGCGGCACTTTTCTCACAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCAGGAC
* *
39387453 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAA
39387487 AACATGACTT
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 108 1.00
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.21
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCAGGAC
Found at i:39387708 original size:18 final size:18
Alignment explanation
Indices: 39387685--39387744 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
39387675 TTAAAACAAG
39387685 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
*** * *
39387703 TTACATAAGAAAATT-G-T
1 TTACAT-TCTATATTAGAA
39387720 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
39387738 TTACATT
1 TTACATT
39387745 AGAATTACAT
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 4 0.14
17 7 0.24
18 14 0.48
19 4 0.14
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (18 bp):
TTACATTCTATATTAGAA
Found at i:39390610 original size:22 final size:22
Alignment explanation
Indices: 39390567--39390636 Score: 95
Period size: 22 Copynumber: 3.2 Consensus size: 22
39390557 GCTTGTAATT
**
39390567 AGAGCTTAGTACGTTAGCCATG
1 AGAGCTTAGTACGTTAAACATG
* * *
39390589 AGGGTTTAGTTCGTTAAACATG
1 AGAGCTTAGTACGTTAAACATG
39390611 AGAGCTTAGTACGTTAAACATG
1 AGAGCTTAGTACGTTAAACATG
39390633 AGAG
1 AGAG
39390637 GAAAAAAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (22 bp):
AGAGCTTAGTACGTTAAACATG
Found at i:39393921 original size:7 final size:7
Alignment explanation
Indices: 39393911--39393948 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
39393901 CACTAACTCT
*
39393911 TAACCTC
1 TAACCCC
39393918 TAACCCC
1 TAACCCC
39393925 TAACCCC
1 TAACCCC
39393932 TAACCCC
1 TAACCCC
39393939 TAACCCC
1 TAACCCC
39393946 TAA
1 TAA
39393949 ATCTTATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (7 bp):
TAACCCC
Found at i:39393927 original size:21 final size:21
Alignment explanation
Indices: 39393903--39393954 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
39393893 CCCTAAATCA
*
39393903 CTAACTCTTAACCTCTAACCC
1 CTAACTCTTAACCCCTAACCC
* *
39393924 CTAACCCCTAACCCCTAACCC
1 CTAACTCTTAACCCCTAACCC
*
39393945 CTAAATCTTA
1 CTAACTCTTA
39393955 TTTAATATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.44, G:0.00, T:0.25
Consensus pattern (21 bp):
CTAACTCTTAACCCCTAACCC
Found at i:39394021 original size:27 final size:27
Alignment explanation
Indices: 39393991--39394045 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
39393981 ATTAATCTAG
*
39393991 ACCCTAAAT-CCTAAATCCTAAACCCTA
1 ACCC-AAATCCCTAAACCCTAAACCCTA
* *
39394018 ACCCAAATCCCTAACCCCTAACCCCTA
1 ACCCAAATCCCTAAACCCTAAACCCTA
39394045 A
1 A
39394046 ACCTTATTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.18
Consensus pattern (27 bp):
ACCCAAATCCCTAAACCCTAAACCCTA
Found at i:39394036 original size:20 final size:19
Alignment explanation
Indices: 39394003--39394041 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
39393993 CCTAAATCCT
39394003 AAATCCTAAACCCTAACCC
1 AAATCCTAAACCCTAACCC
*
39394022 AAATCCCTAACCCCTAACCC
1 AAAT-CCTAAACCCTAACCC
39394042 CTAAACCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (19 bp):
AAATCCTAAACCCTAACCC
Found at i:39394039 original size:97 final size:97
Alignment explanation
Indices: 39393889--39394093 Score: 281
Period size: 95 Copynumber: 2.1 Consensus size: 97
39393879 CTCAAATCTT
* * * *
39393889 TAAACCCTAAATCACTAACTCTTAACCTCTAACCCCTAACCCCTAACCCCTAACCCCTAAATCTT
1 TAAACCCTAAATCACTAAATCTAAACCTCTAACCCCAAACCCCTAACCCCTAACCCCTAAACCTT
39393954 ATTTAATATATAAATTAAAAAACACTAATTAATC
66 A-TTAA-ATATAAATTAAAAAACACTAATTAATC
* *
39393988 TAGACCCTAAATC-CTAAATCCTAAACC-CTAA-CCCAAATCCCTAACCCCTAACCCCTAAACCT
1 TAAACCCTAAATCACTAAAT-CTAAACCTCTAACCCCAAACCCCTAACCCCTAACCCCTAAACCT
* * *
39394050 TATTCAATATAAATTAGAACACACTAATTAATC
65 TATTAAATATAAATTAAAAAACACTAATTAATC
39394083 TAAACCCTAAA
1 TAAACCCTAAA
39394094 CTCTAACCTG
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
95 35 0.37
96 3 0.03
97 30 0.32
98 9 0.09
99 18 0.19
ACGTcount: A:0.42, C:0.31, G:0.01, T:0.26
Consensus pattern (97 bp):
TAAACCCTAAATCACTAAATCTAAACCTCTAACCCCAAACCCCTAACCCCTAACCCCTAAACCTT
ATTAAATATAAATTAAAAAACACTAATTAATC
Found at i:39394277 original size:14 final size:14
Alignment explanation
Indices: 39394255--39394291 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
39394245 ATCCTAAATT
39394255 AACCATATACCCTA
1 AACCATATACCCTA
*
39394269 AATCATATACCCTA
1 AACCATATACCCTA
39394283 AACCATATA
1 AACCATATA
39394292 TATTAAACCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (14 bp):
AACCATATACCCTA
Found at i:39394726 original size:41 final size:41
Alignment explanation
Indices: 39394662--39394948 Score: 414
Period size: 41 Copynumber: 7.0 Consensus size: 41
39394652 TCAAAAACGG
* * *
39394662 GCATTAGCGGCGCTTTTTAAAAAATGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* * *
39394703 GCACTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGTCTGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* * * * *
39394744 GCATTAGCGACACTTCTTCAAAAATGCCGCTAAAGGTCTGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
*
39394785 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCAA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* * *
39394826 GCATTAGCGGCG-TTTTTTAAAAAGCGCTGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAA-CGCCGCTAAAGGCCCGA
*
39394867 GCATTAGTGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
39394908 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
39394949 AAAACTCAAT
Statistics
Matches: 219, Mismatches: 25, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 9 0.04
41 201 0.92
42 9 0.04
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (41 bp):
GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
Found at i:39395052 original size:39 final size:38
Alignment explanation
Indices: 39394982--39395115 Score: 144
Period size: 40 Copynumber: 3.4 Consensus size: 38
39394972 GGGCTTAGGC
*
39394982 TTTTT-GTGGCGCTTTTCAAAAAACGCCGCTAATGCTTA
1 TTTTTAGTGGCG-TTTTCCAAAAACGCCGCTAATGCTTA
* *
39395020 TTTTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGA
1 TTTTTAGTGGCGTTTTCCAAAAA-CGCCGCTAATGCT-TA
** * * *
39395060 CCTTTAGTGGCACTTTTCTACAAACGCCGCTAATGCTTGA
1 TTTTTAGTGGC-GTTTTCCAAAAACGCCGCTAATGCTT-A
39395100 TTTTTAGTGGCGTTTT
1 TTTTTAGTGGCGTTTT
39395116 TTATCCAAAC
Statistics
Matches: 78, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
38 15 0.19
39 22 0.28
40 32 0.41
41 9 0.12
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (38 bp):
TTTTTAGTGGCGTTTTCCAAAAACGCCGCTAATGCTTA
Found at i:39395088 original size:40 final size:38
Alignment explanation
Indices: 39394982--39395133 Score: 135
Period size: 40 Copynumber: 3.8 Consensus size: 38
39394972 GGGCTTAGGC
* *
39394982 TTTTT-GTGGCGCTTTTCAAAAAACGCCGCTAATGCTTA
1 TTTTTAGTGGC-CTTTTCTAAAAACGCCGCTAATGCTGA
* * *
39395020 TTTTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGA
1 TTTTTAGTGGCCTTTTCTAAAAA-CGCCGCTAATGCT-GA
** *
39395060 CCTTTAGTGGCACTTTTCTACAAACGCCGCTAATGCTTGA
1 TTTTTAGTGGC-CTTTTCTAAAAACGCCGCTAATGC-TGA
* * *
39395100 TTTTTAGTGGCGTTTTTTATCCAAACGCCGCTAA
1 TTTTTAGTGGCCTTTTCTA--AAAACGCCGCTAA
39395134 AAATGCCGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
38 15 0.16
39 23 0.25
40 32 0.34
41 23 0.25
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (38 bp):
TTTTTAGTGGCCTTTTCTAAAAACGCCGCTAATGCTGA
Found at i:39398720 original size:14 final size:15
Alignment explanation
Indices: 39398701--39398732 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
39398691 TTATAGTAAT
39398701 AATAACA-AAAAGAA
1 AATAACATAAAAGAA
39398715 AATAACATAAAAGAA
1 AATAACATAAAAGAA
39398730 AAT
1 AAT
39398733 TAAATTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.75, C:0.06, G:0.06, T:0.12
Consensus pattern (15 bp):
AATAACATAAAAGAA
Found at i:39403231 original size:50 final size:50
Alignment explanation
Indices: 39403115--39403307 Score: 260
Period size: 50 Copynumber: 3.8 Consensus size: 50
39403105 GATAATAACA
* * ** *
39403115 TGCCAAAGCCATGTCCCATACATGATCTTACATGGGATGTACTCATGTCGG
1 TGCCAATGCCATGTCCCATACATGGTCTTACATGGGACCT-CTCATCTCGG
* * * **
39403166 TTCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCATACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
39403216 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATTTAGG
1 TGCCAATGCCATGTCCCATACATGGTCTTACATGGGACCTCTCATCTCGG
39403266 TGCCAATGCCATGTCCCATACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCATACATGGTCTTACATGGGACCTCT
39403308 TTACCCCAAT
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
50 93 0.75
51 31 0.25
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCATACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:39403423 original size:13 final size:13
Alignment explanation
Indices: 39403402--39403431 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
39403392 GCTTGGATCA
39403402 TCATCAAATAAAT
1 TCATCAAATAAAT
*
39403415 TCATGAAATAAAT
1 TCATCAAATAAAT
39403428 TCAT
1 TCAT
39403432 TGTTGCTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:39408886 original size:14 final size:15
Alignment explanation
Indices: 39408867--39408896 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
39408857 TATAGTAATG
39408867 ATAACA-AAAAGAAA
1 ATAACATAAAAGAAA
39408881 ATAACATAAAAGAAA
1 ATAACATAAAAGAAA
39408896 A
1 A
39408897 CTAAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.77, C:0.07, G:0.07, T:0.10
Consensus pattern (15 bp):
ATAACATAAAAGAAA
Found at i:39411134 original size:14 final size:14
Alignment explanation
Indices: 39411115--39411148 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
39411105 CTTATGGATT
39411115 TGTGCATGCATAAA
1 TGTGCATGCATAAA
*
39411129 TGTGCATGCATAGA
1 TGTGCATGCATAAA
39411143 TGTGCA
1 TGTGCA
39411149 CTATCAACAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (14 bp):
TGTGCATGCATAAA
Found at i:39411382 original size:29 final size:28
Alignment explanation
Indices: 39411350--39411413 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
39411340 CCTATAACCG
39411350 TATATATTATATATAATAAAACCCACACA
1 TATATATTATATATAATAAAA-CCACACA
* * * *
39411379 TATATATTATGTATAGTAGAACCATACA
1 TATATATTATATATAATAAAACCACACA
39411407 TATATAT
1 TATATAT
39411414 GTACTATGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 13 0.42
29 18 0.58
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.36
Consensus pattern (28 bp):
TATATATTATATATAATAAAACCACACA
Found at i:39417427 original size:29 final size:29
Alignment explanation
Indices: 39417364--39417639 Score: 193
Period size: 29 Copynumber: 9.6 Consensus size: 29
39417354 CAGTAAAAGT
* * *
39417364 AAGCCTTTGTGGCTATTTCTA--AAA-GA
1 AAGCCTTTGTGGCGATCTCTATTAAATGG
* * *
39417390 AAGCATTTGTGGCGATCTTTGTTAAATGG
1 AAGCCTTTGTGGCGATCTCTATTAAATGG
* *
39417419 AAGTCTTTGTGGCGATCTGTATTAAATGG
1 AAGCCTTTGTGGCGATCTCTATTAAATGG
* * * *
39417448 AATACC-TTGTGGCGATCTTTGTTAAATGAA
1 AA-GCCTTTGTGGCGATCTCTATTAAATG-G
* * * * *
39417478 AAG-CTTTATAGTGATCTCTGTTAAATAG
1 AAGCCTTTGTGGCGATCTCTATTAAATGG
* * *
39417506 AAACCTTTGTGGAGATCTCTATTAAATGA
1 AAGCCTTTGTGGCGATCTCTATTAAATGG
** * * *
39417535 AAGTATTTTTGGAGATCTCTATTAAATGA
1 AAGCCTTTGTGGCGATCTCTATTAAATGG
*
39417564 AAGCCTTTGTGGAGATCTCTATTAAATGG
1 AAGCCTTTGTGGCGATCTCTATTAAATGG
* * * * *
39417593 AAGCCTTTTTAGTGATCTATGTTAAATGG
1 AAGCCTTTGTGGCGATCTCTATTAAATGG
* * *
39417622 ATGCCCTTGTGGCTATCT
1 AAGCCTTTGTGGCGATCT
39417640 TAACTAAATG
Statistics
Matches: 195, Mismatches: 48, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
26 16 0.08
28 6 0.03
29 170 0.87
30 3 0.02
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (29 bp):
AAGCCTTTGTGGCGATCTCTATTAAATGG
Found at i:39417462 original size:58 final size:58
Alignment explanation
Indices: 39417395--39417651 Score: 223
Period size: 58 Copynumber: 4.4 Consensus size: 58
39417385 AAAGAAAGCA
* * * * * *
39417395 TTTGTGGCGATCTTTGTTAAATGGAAGTCTTTGTGGCGATCTGTATTAAATGGAATACC
1 TTTGTGGCGATCTTTATTAAATGAAAGTCTTTTTAGTGATCTCTATTAAATGGAA-ACC
* * * *
39417454 -TTGTGGCGATCTTTGTTAAATGAAAAG-CTTTATAGTGATCTCTGTTAAATAGAAACC
1 TTTGTGGCGATCTTTATTAAATG-AAAGTCTTTTTAGTGATCTCTATTAAATGGAAACC
* * * * *
39417511 TTTGTGGAGATCTCTATTAAATGAAAGTATTTTTGGAGATCTCTATTAAAT-GAAAGCC
1 TTTGTGGCGATCTTTATTAAATGAAAGTCTTTTTAGTGATCTCTATTAAATGGAAA-CC
* * * * * * **
39417569 TTTGTGGAGATCTCTATTAAATGGAAGCCTTTTTAGTGATCTATGTTAAATGGATGCC
1 TTTGTGGCGATCTTTATTAAATGAAAGTCTTTTTAGTGATCTCTATTAAATGGAAACC
* * * *
39417627 CTTGTGGCTATCTTAACTAAATGAA
1 TTTGTGGCGATCTTTATTAAATGAA
39417652 TGCTTTGTGG
Statistics
Matches: 162, Mismatches: 31, Indels: 11
0.79 0.15 0.05
Matches are distributed among these distances:
57 11 0.07
58 146 0.90
59 5 0.03
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (58 bp):
TTTGTGGCGATCTTTATTAAATGAAAGTCTTTTTAGTGATCTCTATTAAATGGAAACC
Found at i:39417610 original size:87 final size:87
Alignment explanation
Indices: 39417383--39417620 Score: 228
Period size: 87 Copynumber: 2.7 Consensus size: 87
39417373 TGGCTATTTC
* * * * * * * *
39417383 TAAAAGAAAGCATTTGTGGCGATCTTTGTTAAATGGAAGTCTTTGTGGCGATCTGTATTAAATGG
1 TAAATGAAAGCCTTTGTGGAGATCTCTGTTAAATGGAAGCCTTTGTGGAGATCTATATTAAATGA
* * *
39417448 AATACCTTGTGGCGATCTTTGT
66 AATACCTTGTGGAGATCTCTAT
* * * * * *
39417470 TAAATGAAAAG-CTTTATAGTGATCTCTGTTAAATAGAAACCTTTGTGGAGATCTCTATTAAATG
1 TAAATG-AAAGCCTTTGTGGAGATCTCTGTTAAATGGAAGCCTTTGTGGAGATCTATATTAAATG
* *
39417534 AAAGTA-TTTTTGGAGATCTCTAT
65 AAA-TACCTTGTGGAGATCTCTAT
* * * * *
39417557 TAAATGAAAGCCTTTGTGGAGATCTCTATTAAATGGAAGCCTTTTTAGTGATCTATGTTAAATG
1 TAAATGAAAGCCTTTGTGGAGATCTCTGTTAAATGGAAGCCTTTGTGGAGATCTATATTAAATG
39417621 GATGCCCTTG
Statistics
Matches: 120, Mismatches: 28, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
86 4 0.03
87 110 0.92
88 6 0.05
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (87 bp):
TAAATGAAAGCCTTTGTGGAGATCTCTGTTAAATGGAAGCCTTTGTGGAGATCTATATTAAATGA
AATACCTTGTGGAGATCTCTAT
Found at i:39425505 original size:95 final size:95
Alignment explanation
Indices: 39425239--39425587 Score: 366
Period size: 95 Copynumber: 3.7 Consensus size: 95
39425229 TTTATCTATT
* * * * * * ** *
39425239 ATGAAAAATTTTCTTTGAGTTAGTTGATTTAACATCAGTTCTCCAAACAGCAAGTTGATTTAAGA
1 ATGAACAATTTTCTTTGAGTTAGTTGATTCAATATCACTACGCCAAACAGCTCGCTGATTTAAGA
*
39425304 -T-CATAGCCTAAGTTTAATCGATTTAATATC
66 TTGCA-A-CCTAAGTTTATTCGATTTAATATC
* * * * * * *
39425334 ATTAACAATTTTC--TGAGTTAGTTGATTCAATTTCGCTACTG-TAAATAGCTCGTTGATTTAAT
1 ATGAACAATTTTCTTTGAGTTAGTTGATTCAATATCACTAC-GCCAAACAGCTCGCTGATTTAAG
* * *
39425396 ATCGCAGCCTAAGTTTATTTGATTTAATATC
65 ATTGCAACCTAAGTTTATTCGATTTAATATC
* * * *
39425427 ATGAACAATTTTCTTTGAGTTAGCTAATTTAATATCACTACGCCATACAGCTCGCTGATTTAAGA
1 ATGAACAATTTTCTTTGAGTTAGTTGATTCAATATCACTACGCCAAACAGCTCGCTGATTTAAGA
*
39425492 TTGCAACCTAAGTTCATTCGATTTAATATC
66 TTGCAACCTAAGTTTATTCGATTTAATATC
* * * * *
39425522 ATGAACAATTTTCTTTGAGATAGTTGATTCAATATCACTACTCCAAATAGCTTGCTAATTTAAGA
1 ATGAACAATTTTCTTTGAGTTAGTTGATTCAATATCACTACGCCAAACAGCTCGCTGATTTAAGA
39425587 T
66 T
39425588 CACGGTTAAT
Statistics
Matches: 206, Mismatches: 42, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
93 71 0.34
94 1 0.00
95 134 0.65
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.39
Consensus pattern (95 bp):
ATGAACAATTTTCTTTGAGTTAGTTGATTCAATATCACTACGCCAAACAGCTCGCTGATTTAAGA
TTGCAACCTAAGTTTATTCGATTTAATATC
Found at i:39425920 original size:95 final size:95
Alignment explanation
Indices: 39425745--39425970 Score: 310
Period size: 95 Copynumber: 2.4 Consensus size: 95
39425735 TTGATTTAAT
* * ** * * *
39425745 ATCACAGCCTATGTTCATTAAATTTAATATCATGAACAATTTTTTTTGAGTTAGCTGAATCAATA
1 ATCACAACCTAAGTTCATTCGATTTGATATCATGAAAAATTTTCTTTGAGTTAGCTGAATCAATA
*
39425810 TCGCTACTCTAAATAGCTCTG-TGATATAAG
66 TCGCTACTCTAAATAGCT-TGCTAATATAAG
* *
39425840 ATCGCAACCTAAGTTCATTCGATTTGATATCATGAAAAATTTTCTTTGAGTTAGCTGATTCAATA
1 ATCACAACCTAAGTTCATTCGATTTGATATCATGAAAAATTTTCTTTGAGTTAGCTGAATCAATA
*
39425905 TCGCTACTCTAAATAGCTTGCTAATTTAAG
66 TCGCTACTCTAAATAGCTTGCTAATATAAG
* * *
39425935 ATCACAGCCTAGGTTCATTCGATTTGACATCATGAA
1 ATCACAACCTAAGTTCATTCGATTTGATATCATGAA
39425971 TGATCTCATT
Statistics
Matches: 115, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
94 2 0.02
95 113 0.98
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (95 bp):
ATCACAACCTAAGTTCATTCGATTTGATATCATGAAAAATTTTCTTTGAGTTAGCTGAATCAATA
TCGCTACTCTAAATAGCTTGCTAATATAAG
Found at i:39442926 original size:23 final size:23
Alignment explanation
Indices: 39442893--39442990 Score: 99
Period size: 23 Copynumber: 4.3 Consensus size: 23
39442883 AGGGCATTAT
*
39442893 AGAATACGCCACAAAGGTTTTAC
1 AGAATACGCCACAAAGGATTTAC
* * *
39442916 AGATTATGCCACAAATGCA-TTAC
1 AGAATACGCCACAAA-GGATTTAC
*
39442939 AGAATACGCCTCAAAGGATTTAC
1 AGAATACGCCACAAAGGATTTAC
* * *
39442962 AGAATACACCATAAAGGCTTTAC
1 AGAATACGCCACAAAGGATTTAC
*
39442985 AAAATA
1 AGAATA
39442991 ACACATGTTT
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
22 2 0.03
23 57 0.95
24 1 0.02
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.22
Consensus pattern (23 bp):
AGAATACGCCACAAAGGATTTAC
Found at i:39442985 original size:46 final size:46
Alignment explanation
Indices: 39442885--39442990 Score: 122
Period size: 46 Copynumber: 2.3 Consensus size: 46
39442875 TTGCCTCAAG
* * * **
39442885 GGCATTATAGAATACGCCACAAAGGTTTTACAGATTATGCCACAAA
1 GGCATTACAGAATACGCCACAAAGGATTTACAGAATACACCACAAA
* * *
39442931 TGCATTACAGAATACGCCTCAAAGGATTTACAGAATACACCATAAA
1 GGCATTACAGAATACGCCACAAAGGATTTACAGAATACACCACAAA
* *
39442977 GGCTTTACAAAATA
1 GGCATTACAGAATA
39442991 ACACATGTTT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.24
Consensus pattern (46 bp):
GGCATTACAGAATACGCCACAAAGGATTTACAGAATACACCACAAA
Found at i:39447974 original size:22 final size:22
Alignment explanation
Indices: 39447949--39448010 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
39447939 ACTGCTAAGA
*
39447949 AGAGAGCACCGAAGTGTTGATC
1 AGAGAGCACCGAAGTGTTGAAC
*
39447971 AGAGAGCACCGAAGTGATGAAC
1 AGAGAGCACCGAAGTGTTGAAC
**
39447993 AGAGAGCACAAAAGTGTT
1 AGAGAGCACCGAAGTGTT
39448011 AAACCCGTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.39, C:0.16, G:0.31, T:0.15
Consensus pattern (22 bp):
AGAGAGCACCGAAGTGTTGAAC
Found at i:39451685 original size:25 final size:25
Alignment explanation
Indices: 39451657--39451742 Score: 75
Period size: 25 Copynumber: 3.2 Consensus size: 25
39451647 GGCGAAATAA
39451657 AAATGAAAACGATAATTAAAAATTG
1 AAATGAAAACGATAATTAAAAATTG
* * *
39451682 AAATGAAATTATTGATCGTGGATT-GAAATTG
1 AAATGAAA--A-CGA---T-AATTAAAAATTG
39451713 AAATGAAAACGATAATTAAAAATTG
1 AAATGAAAACGATAATTAAAAATTG
39451738 AAATG
1 AAATG
39451743 CATAGTTAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 16
0.68 0.09 0.23
Matches are distributed among these distances:
24 3 0.06
25 20 0.43
27 1 0.02
28 4 0.09
29 1 0.02
31 15 0.32
32 3 0.06
ACGTcount: A:0.52, C:0.03, G:0.16, T:0.28
Consensus pattern (25 bp):
AAATGAAAACGATAATTAAAAATTG
Found at i:39458599 original size:19 final size:19
Alignment explanation
Indices: 39458575--39458612 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
39458565 AAAAACTACT
39458575 TTACAAAATAGTTCTATTA
1 TTACAAAATAGTTCTATTA
39458594 TTACAAAATAGTTCTATTA
1 TTACAAAATAGTTCTATTA
39458613 AACAATCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (19 bp):
TTACAAAATAGTTCTATTA
Found at i:39460407 original size:22 final size:22
Alignment explanation
Indices: 39460381--39460521 Score: 201
Period size: 22 Copynumber: 6.4 Consensus size: 22
39460371 AAAAAAAGAA
*
39460381 CTCATGTTTCACGTACTAAGCT
1 CTCATGTTTAACGTACTAAGCT
39460403 CTCATGTTTAACGTACTAAGCT
1 CTCATGTTTAACGTACTAAGCT
* * *
39460425 CTCATGTTTAACGAACTAAACC
1 CTCATGTTTAACGTACTAAGCT
**
39460447 CTCATGGCTAACGTACTAAGCT
1 CTCATGTTTAACGTACTAAGCT
**
39460469 CTCATGGCTAACGTACTAAGCT
1 CTCATGTTTAACGTACTAAGCT
*
39460491 CTCATGTTTCACGTACTAAGCT
1 CTCATGTTTAACGTACTAAGCT
39460513 CTCATGTTT
1 CTCATGTTT
39460522 GAACAATAAA
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 107 1.00
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.33
Consensus pattern (22 bp):
CTCATGTTTAACGTACTAAGCT
Found at i:39467278 original size:7 final size:7
Alignment explanation
Indices: 39467266--39467314 Score: 64
Period size: 7 Copynumber: 7.1 Consensus size: 7
39467256 GATAGGGGTC
39467266 GGGAAAT
1 GGGAAAT
39467273 GGGAAAT
1 GGGAAAT
39467280 GGGAAAT
1 GGGAAAT
39467287 GGGAAAT
1 GGGAAAT
* *
39467294 GGG-GAG
1 GGGAAAT
*
39467300 GGGAATT
1 GGGAAAT
39467307 GGGAAAT
1 GGGAAAT
39467314 G
1 G
39467315 CAAATGTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
6 4 0.11
7 31 0.89
ACGTcount: A:0.37, C:0.00, G:0.49, T:0.14
Consensus pattern (7 bp):
GGGAAAT
Found at i:39467309 original size:20 final size:21
Alignment explanation
Indices: 39467266--39467314 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
39467256 GATAGGGGTC
*
39467266 GGGAAATGGGAAATGGGAAAT
1 GGGAAATGGGAAAGGGGAAAT
* *
39467287 GGGAAATGGG-GAGGGGAATT
1 GGGAAATGGGAAAGGGGAAAT
39467307 GGGAAATG
1 GGGAAATG
39467315 CAAATGTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.37, C:0.00, G:0.49, T:0.14
Consensus pattern (21 bp):
GGGAAATGGGAAAGGGGAAAT
Found at i:39470524 original size:25 final size:25
Alignment explanation
Indices: 39470495--39470547 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
39470485 TTGATTACTT
*
39470495 ATTTGAATTCAATTACAAACAATTA
1 ATTTGAATTCAATTACAAACAATCA
*
39470520 ATTTGAATTTAATTACAAACAATCA
1 ATTTGAATTCAATTACAAACAATCA
39470545 ATT
1 ATT
39470548 CTTAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.38
Consensus pattern (25 bp):
ATTTGAATTCAATTACAAACAATCA
Found at i:39471229 original size:17 final size:17
Alignment explanation
Indices: 39471207--39471244 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
39471197 GAAAGTTTTT
39471207 AAGCTCTGTACTAATAA
1 AAGCTCTGTACTAATAA
*
39471224 AAGCTCTGTAGTAATAA
1 AAGCTCTGTACTAATAA
39471241 AAGC
1 AAGC
39471245 ATGGCAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (17 bp):
AAGCTCTGTACTAATAA
Found at i:39475289 original size:61 final size:60
Alignment explanation
Indices: 39475185--39475386 Score: 214
Period size: 68 Copynumber: 3.2 Consensus size: 60
39475175 ATTAAACTTA
*
39475185 ATATTAAATTAATATAATACTTA-T-CAAGATAAATATTAGATTAAATTTAATATTAAAT
1 ATATTAAATTAATATAATACTTATTACAAGATAAATATTAAATTAAATTTAATATTAAAT
*
39475243 ATATTAAATTAATATAATACTTATCTACAAGATAAATGTTAAATTAAATTTAATATTAATAT
1 ATATTAAATTAATATAATACTTAT-TACAAGATAAATATTAAATTAAATTTAATATTAA-AT
** * *
39475305 AATCACTTTAATATTAA-ATTAATAAAATATTATCAAGATAAATATTAACTTTAATTTAATATTA
1 -AT-A--TTAA-ATTAATA-TAAT-ACTTATTA-CAAGATAAATATTAAATTAAATTTAATATTA
39475369 AA-
58 AAT
*
39475371 ACTATTAAAATAATAT
1 A-TATTAAATTAATAT
39475387 CATTTTTGGA
Statistics
Matches: 122, Mismatches: 8, Indels: 24
0.79 0.05 0.16
Matches are distributed among these distances:
58 23 0.19
60 1 0.01
61 30 0.25
62 7 0.06
63 7 0.06
64 1 0.01
65 2 0.02
66 6 0.05
67 12 0.10
68 33 0.27
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.41
Consensus pattern (60 bp):
ATATTAAATTAATATAATACTTATTACAAGATAAATATTAAATTAAATTTAATATTAAAT
Found at i:39478913 original size:19 final size:18
Alignment explanation
Indices: 39478861--39478914 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
39478851 TATTTACAAT
*
39478861 ATATTTATTTCAATTCAA
1 ATATTTATATCAATTCAA
* * *
39478879 ATAATCA-ATAAATTCATA
1 ATATTTATATCAATTCA-A
39478897 ATATTTATATCAATTCAA
1 ATATTTATATCAATTCAA
39478915 TCCATTTCAA
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
17 7 0.26
18 12 0.44
19 8 0.30
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (18 bp):
ATATTTATATCAATTCAA
Found at i:39480263 original size:19 final size:20
Alignment explanation
Indices: 39480241--39480279 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
39480231 ATTTTAATTA
*
39480241 ATTTGATC-AATTTAATTTT
1 ATTTGATCAAAATTAATTTT
39480260 ATTTGATCAAAATTAATTTT
1 ATTTGATCAAAATTAATTTT
39480280 CCTAAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (20 bp):
ATTTGATCAAAATTAATTTT
Found at i:39487983 original size:16 final size:15
Alignment explanation
Indices: 39487948--39487981 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
39487938 ATTTTAAAGG
*
39487948 AAAATTAATATTGTA
1 AAAATGAATATTGTA
39487963 AAAATGAATATTGTA
1 AAAATGAATATTGTA
39487978 AAAA
1 AAAA
39487982 ATCTTGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (15 bp):
AAAATGAATATTGTA
Found at i:39498359 original size:30 final size:32
Alignment explanation
Indices: 39498290--39498359 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
39498280 TTAAAAAATA
* *
39498290 TCAATTGTGACTCTTTTTTAAAAAGTTGATGGT
1 TCAATT-TGACTCTTTTTTAAAAAGTTGAAGGG
* *
39498323 TAAATTTGACTC-TTTTTAAAAGGTT-AAGGG
1 TCAATTTGACTCTTTTTTAAAAAGTTGAAGGG
39498353 TCAATTT
1 TCAATTT
39498360 TAGCTCAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
30 9 0.28
31 12 0.38
32 6 0.19
33 5 0.16
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.44
Consensus pattern (32 bp):
TCAATTTGACTCTTTTTTAAAAAGTTGAAGGG
Found at i:39499697 original size:40 final size:40
Alignment explanation
Indices: 39499641--39499739 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
39499631 GGCGTTTAGA
*
39499641 TAAAAAACGCCGCTAAAAATCAAGCATTAGCAGCGCTT-T
1 TAAAAAACGCCACTAAAAATCAAGCATTAGCAGCGCTTCT
* * * * *
39499680 TAAAAAAATGCCACTAAAGATCGAGTATTAGCGGCGCTTCT
1 T-AAAAAACGCCACTAAAAATCAAGCATTAGCAGCGCTTCT
39499721 TAAAAAACGCCACTAAAAA
1 TAAAAAACGCCACTAAAAA
39499740 AAAGAATTAG
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.02
40 47 0.94
41 2 0.04
ACGTcount: A:0.43, C:0.21, G:0.15, T:0.20
Consensus pattern (40 bp):
TAAAAAACGCCACTAAAAATCAAGCATTAGCAGCGCTTCT
Found at i:39499749 original size:39 final size:38
Alignment explanation
Indices: 39499641--39499751 Score: 114
Period size: 40 Copynumber: 2.8 Consensus size: 38
39499631 GGCGTTTAGA
* * *
39499641 TAAAAAACGCCGCTAAAAATCAAGCATTAGCAGCGCTTT
1 TAAAAAACGCCACTAAAAA-CAAGAATTAGCGGCGCTTT
* * * *
39499680 TAAAAAAATGCCACTAAAGATCGAGTATTAGCGGCGCTTCT
1 T-AAAAAACGCCACTAAA-AACAAGAATTAGCGGCGCTT-T
*
39499721 TAAAAAACGCCACTAAAAAAAAGAATTAGCG
1 TAAAAAACGCCACTAAAAACAAGAATTAGCG
39499752 ACGTTTTCCA
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
39 11 0.19
40 44 0.76
41 3 0.05
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.20
Consensus pattern (38 bp):
TAAAAAACGCCACTAAAAACAAGAATTAGCGGCGCTTT
Found at i:39501280 original size:36 final size:35
Alignment explanation
Indices: 39501210--39501281 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 35
39501200 AAGATTATGT
* * *
39501210 TTTTAGCGGCGTTTTGCTAGAAGCGCCGCTAAAGG
1 TTTTAGCGGCGTTTTGCGAAAAGAGCCGCTAAAGG
*
39501245 TTTTAGCGGCGTTTGTGGGAAAAGAGCCG-TGAAAGG
1 TTTTAGCGGCGTTT-TGCGAAAAGAGCCGCT-AAAGG
39501281 T
1 T
39501282 CATGGTCATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
35 15 0.48
36 16 0.52
ACGTcount: A:0.22, C:0.15, G:0.35, T:0.28
Consensus pattern (35 bp):
TTTTAGCGGCGTTTTGCGAAAAGAGCCGCTAAAGG
Found at i:39501308 original size:43 final size:42
Alignment explanation
Indices: 39501247--39501364 Score: 155
Period size: 43 Copynumber: 2.7 Consensus size: 42
39501237 GCTAAAGGTT
*
39501247 TTAGCGGCGTTTGTGGGAAAAGAGCCGTGAAAGGTCATGGTCA
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGT-AAAGGTCATGGTCA
* * *
39501290 TTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCGTGGTCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCC-GTAAAGGTCATGGTCA
* *
39501333 TTAGTGGCGTTTGTGGTAAAAGCGCCGCTAAA
1 TTAGCGGCGTTTGTGGGAAAAGCGCCG-TAAA
39501365 ATTAGCGACA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
43 65 0.98
44 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.25
Consensus pattern (42 bp):
TTAGCGGCGTTTGTGGGAAAAGCGCCGTAAAGGTCATGGTCA
Found at i:39502936 original size:21 final size:21
Alignment explanation
Indices: 39502912--39502952 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
39502902 AGGGACTAAA
39502912 TAGAAA-ACTTAGAAATTTTTT
1 TAGAAATACTTA-AAATTTTTT
*
39502933 TAGAAATATTTAAAATTTTT
1 TAGAAATACTTAAAATTTTT
39502953 AACACTGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.46
Consensus pattern (21 bp):
TAGAAATACTTAAAATTTTTT
Found at i:39504388 original size:42 final size:42
Alignment explanation
Indices: 39504341--39504476 Score: 130
Period size: 42 Copynumber: 3.2 Consensus size: 42
39504331 AGGCTAAATA
*
39504341 GAAGCTCATGAGAGCTAAATGAAAACCCATAAGGGTTGAA-T
1 GAAGCTCATAAGAGCTAAATGAAAACCCATAAGGGTTGAACT
* * * * *
39504382 GGAAGCTCGTAAGATCTTAATGAAAACCCATAATGGTTAAACT
1 -GAAGCTCATAAGAGCTAAATGAAAACCCATAAGGGTTGAACT
* * * * * * *
39504425 GAAGCTCAAAAGAGTTGAACGAAAACCCATTAGGTTTGAACA
1 GAAGCTCATAAGAGCTAAATGAAAACCCATAAGGGTTGAACT
*
39504467 GAAACTCATA
1 GAAGCTCATA
39504477 TGAGTTAACA
Statistics
Matches: 74, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
42 73 0.99
43 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.21, T:0.21
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTAAATGAAAACCCATAAGGGTTGAACT
Found at i:39504596 original size:24 final size:24
Alignment explanation
Indices: 39504569--39504632 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
39504559 TAATTTGCCA
* *
39504569 TCAATTCATCATTTTCATTTATCG
1 TCAATTCATCCTTTTCATTTACCG
39504593 TCAATTCATCCTTTGT-ATTTACCG
1 TCAATTCATCCTTT-TCATTTACCG
39504617 TCAATTCATCCTTTTC
1 TCAATTCATCCTTTTC
39504633 CACATAACAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
23 1 0.03
24 34 0.94
25 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.05, T:0.48
Consensus pattern (24 bp):
TCAATTCATCCTTTTCATTTACCG
Found at i:39511797 original size:18 final size:18
Alignment explanation
Indices: 39511759--39511797 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
39511749 TGAACTCTAC
* * *
39511759 AATTCGAATAATTTAAGT
1 AATTCGAATAACTCAAAT
39511777 AATTCGAATAACTCAAAT
1 AATTCGAATAACTCAAAT
39511795 AAT
1 AAT
39511798 AGATTGGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.33
Consensus pattern (18 bp):
AATTCGAATAACTCAAAT
Found at i:39511929 original size:18 final size:19
Alignment explanation
Indices: 39511892--39511945 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
39511882 GTTCCAAAAT
* *
39511892 AATTCAAAATAATTTTTAAA
1 AATTCCAAAT-ATTTATAAA
39511912 AA-TCCAAATATTTATAAA
1 AATTCCAAATATTTATAAA
39511930 AATTCCAAAT-TTTATA
1 AATTCCAAATATTTATA
39511946 TTTTTTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 16 0.52
19 13 0.42
20 2 0.06
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (19 bp):
AATTCCAAATATTTATAAA
Found at i:39511931 original size:19 final size:18
Alignment explanation
Indices: 39511909--39511945 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
39511899 AATAATTTTT
39511909 AAAAATCCAAATATTTATA
1 AAAAATCCAAAT-TTTATA
*
39511928 AAAATTCCAAATTTTATA
1 AAAAATCCAAATTTTATA
39511946 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAAATCCAAATTTTATA
Found at i:39511966 original size:10 final size:10
Alignment explanation
Indices: 39511951--39512014 Score: 62
Period size: 9 Copynumber: 6.6 Consensus size: 10
39511941 TTATATTTTT
39511951 TAAAAAATTC
1 TAAAAAATTC
39511961 T-AAAAATT-
1 TAAAAAATTC
*
39511969 AAAAAAATTC
1 TAAAAAATTC
* *
39511979 TAAAGAA-TA
1 TAAAAAATTC
*
39511988 TAAAAAATGC
1 TAAAAAATTC
39511998 TAAAAAAATTC
1 T-AAAAAATTC
39512009 TAAAAA
1 TAAAAA
39512015 TATAATTCCG
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
9 21 0.50
10 12 0.29
11 9 0.21
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.25
Consensus pattern (10 bp):
TAAAAAATTC
Found at i:39511975 original size:18 final size:18
Alignment explanation
Indices: 39511951--39512003 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
39511941 TTATATTTTT
39511951 TAAAAAATTCTAAAAAT-
1 TAAAAAATTCTAAAAATA
39511968 TAAAAAAATTCTAAAGAATA
1 T-AAAAAATTCTAAA-AATA
*
39511988 TAAAAAATGCTAAAAA
1 TAAAAAATTCTAAAAA
39512004 AATTCTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
17 1 0.03
18 15 0.47
19 15 0.47
20 1 0.03
ACGTcount: A:0.66, C:0.06, G:0.04, T:0.25
Consensus pattern (18 bp):
TAAAAAATTCTAAAAATA
Found at i:39512132 original size:16 final size:17
Alignment explanation
Indices: 39512102--39512134 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
39512092 CTTTAAAAGA
39512102 GTTTTCAAATATATATG
1 GTTTTCAAATATATATG
*
39512119 GTTTT-AAATTTATATG
1 GTTTTCAAATATATATG
39512135 CTCTAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (17 bp):
GTTTTCAAATATATATG
Found at i:39513993 original size:4 final size:4
Alignment explanation
Indices: 39513984--39514052 Score: 52
Period size: 4 Copynumber: 16.0 Consensus size: 4
39513974 TGTCTTTCTC
39513984 CTTT CTTT CTTT CCTTT -TTT -TTT CTTTT CTTT CTTT CCTTT CTGTTT
1 CTTT CTTT CTTT -CTTT CTTT CTTT C-TTT CTTT CTTT -CTTT C--TTT
*
39514031 CGTTTT GTTT CTTT CTTT CTTT
1 C--TTT CTTT CTTT CTTT CTTT
39514053 ATTCATTTAC
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
3 6 0.11
4 30 0.55
5 12 0.22
6 7 0.13
ACGTcount: A:0.00, C:0.22, G:0.04, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:39514013 original size:24 final size:25
Alignment explanation
Indices: 39513985--39514050 Score: 91
Period size: 24 Copynumber: 2.7 Consensus size: 25
39513975 GTCTTTCTCC
* *
39513985 TTTCTTTCTTTCCTTTTTTTTTC-T
1 TTTCTTTCTTTCCTTTCTGTTTCGT
39514009 TTTCTTTCTTTCCTTTCTGTTTCGT
1 TTTCTTTCTTTCCTTTCTGTTTCGT
*
39514034 TTTGTTTCTTT-CTTTCT
1 TTTCTTTCTTTCCTTTCT
39514051 TTATTCATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 27 0.71
25 11 0.29
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74
Consensus pattern (25 bp):
TTTCTTTCTTTCCTTTCTGTTTCGT
Found at i:39515084 original size:25 final size:25
Alignment explanation
Indices: 39515056--39515105 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
39515046 ATATAGTTTT
39515056 TATATTAT-TTATAAAGGTTATAATA
1 TATATTATATTAT-AAGGTTATAATA
*
39515081 TATATTATATTATAATGTTATAATA
1 TATATTATATTATAAGGTTATAATA
39515106 ACACAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (25 bp):
TATATTATATTATAAGGTTATAATA
Found at i:39516053 original size:43 final size:43
Alignment explanation
Indices: 39515988--39516115 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 43
39515978 ATAGGATTCT
* * *
39515988 GATATGTGTTTTCGTGTAAGACCACATCTGGGGCGTTGGCATC
1 GATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCATC
**
39516031 GACT-TGTGTTTACGTGTAAGACCTTGTCT-GGA-GTAGTGGCATC
1 GA-TATGTGTTTACGTGTAAGACCACGTCTGGGACGT--TGGCATC
* * *
39516074 GATATGTGATTACATGTAAGACCACGTCCGGGACGTTGGCAT
1 GATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
39516116 TGTCCGAGCC
Statistics
Matches: 69, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
41 2 0.03
42 3 0.04
43 58 0.84
44 4 0.06
45 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (43 bp):
GATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:39527706 original size:87 final size:87
Alignment explanation
Indices: 39527560--39527737 Score: 338
Period size: 87 Copynumber: 2.0 Consensus size: 87
39527550 TTCTTCCCAT
*
39527560 ATGCTTGAAAGAATAGCAGTTTGAGTATCCATCGTGCATTACTCGACGATCAAATTGCCACGGAC
1 ATGCTTGAAAGAATAGCAGTTTGAGTATCCATCGTGCATGACTCGACGATCAAATTGCCACGGAC
39527625 GACCAAGTAGCAAATGACCCGC
66 GACCAAGTAGCAAATGACCCGC
39527647 ATGCTTGAAAGAATAGCAGTTTGAGTATCCATCGTGCATGACTCGACGATCAAATTGCCACGGAC
1 ATGCTTGAAAGAATAGCAGTTTGAGTATCCATCGTGCATGACTCGACGATCAAATTGCCACGGAC
*
39527712 GACCAAGTAGCAAGTGACCCGC
66 GACCAAGTAGCAAATGACCCGC
39527734 ATGC
1 ATGC
39527738 ATTGGAACAA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 89 1.00
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.21
Consensus pattern (87 bp):
ATGCTTGAAAGAATAGCAGTTTGAGTATCCATCGTGCATGACTCGACGATCAAATTGCCACGGAC
GACCAAGTAGCAAATGACCCGC
Found at i:39539422 original size:14 final size:15
Alignment explanation
Indices: 39539400--39539476 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
39539390 CAATCAAACA
39539400 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
39539414 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
39539429 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
39539449 CCA-AAAATCATTTT
1 CCAGAAAATCATTTT
* *
39539463 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
39539477 TCTGACAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 20 0.40
15 16 0.32
16 1 0.02
18 1 0.02
19 4 0.08
20 8 0.16
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:39539460 original size:34 final size:35
Alignment explanation
Indices: 39539404--39539470 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
39539394 CAAACACCAG
* *
39539404 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGAAAATCATTTTACAGAAAAGT
*
39539439 AAAACATTTTCCA-AAAATCATTTTACGGAAAA
1 AAAACATTTTCCAGAAAATCATTTTACAGAAAA
39539471 TATTTTTCTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGAAAATCATTTTACAGAAAAGT
Found at i:39540489 original size:17 final size:17
Alignment explanation
Indices: 39540465--39540502 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
39540455 TCACAACCAT
* *
39540465 CATC-ACCATTCCATAC
1 CATCTACCATTCAACAC
39540481 CATCTACCATTCAACAC
1 CATCTACCATTCAACAC
39540498 CATCT
1 CATCT
39540503 CTTTTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.32, C:0.42, G:0.00, T:0.26
Consensus pattern (17 bp):
CATCTACCATTCAACAC
Found at i:39543835 original size:85 final size:83
Alignment explanation
Indices: 39543721--39544003 Score: 352
Period size: 85 Copynumber: 3.3 Consensus size: 83
39543711 CTAACTTTTT
* * *
39543721 GCGGCGCTTACAGAAAAAAACTCCGCTAAAGATCATGTTCTTTAGCGGCGCTAAGAAAATAATCG
1 GCGGCGCTTA-TG-AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAA-AA-CG
39543786 CCGCTAAAGATCATGTTCTTTA
62 CCGCTAAAGATCATGTTCTTTA
* *
39543808 GCGGCGCTTATGAAAAAACGCCGCTAAAGATCACGTTCTTTAGCGGTGCTTAGAAAAAAACGCCG
1 GCGGCGCTTATGAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG-AAAAAACGCCG
*
39543873 CTAAAGATCATATTCTTTA
65 CTAAAGATCATGTTCTTTA
* * * *
39543892 GCAGCGCTTAGGAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGGATGAAAACGCC
1 GCGGCGCTTATGAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC-TTAGA-AAAAACGCC
* *
39543957 GCTAAA-AGTAATGTTCTATA
64 GCTAAAGA-TCATGTTCTTTA
* **
39543977 GCGGCGCTTGTTCAAAAACGCCGCTAA
1 GCGGCGCTTATGAAAAAACGCCGCTAA
39544004 TAGTAGTGTT
Statistics
Matches: 172, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
84 70 0.41
85 87 0.51
86 5 0.03
87 10 0.06
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (83 bp):
GCGGCGCTTATGAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAACGCCGC
TAAAGATCATGTTCTTTA
Found at i:39543846 original size:42 final size:42
Alignment explanation
Indices: 39543721--39544003 Score: 340
Period size: 42 Copynumber: 6.6 Consensus size: 42
39543711 CTAACTTTTT
* *
39543721 GCGGCGCTTACAGAAAAAAACTCCGCTAAAGATCATGTTCTTTA
1 GCGGCGCTTA-TG-AAAAAACGCCGCTAAAGATCATGTTCTTTA
*
39543765 GCGGCGC-TAAGAAAATAATCGCCGCTAAAGATCATGTTCTTTA
1 GCGGCGCTTATGAAAA-AA-CGCCGCTAAAGATCATGTTCTTTA
*
39543808 GCGGCGCTTATGAAAAAACGCCGCTAAAGATCACGTTCTTTA
1 GCGGCGCTTATGAAAAAACGCCGCTAAAGATCATGTTCTTTA
* *
39543850 GCGGTGCTTA-GAAAAAAACGCCGCTAAAGATCATATTCTTTA
1 GCGGCGCTTATG-AAAAAACGCCGCTAAAGATCATGTTCTTTA
* *
39543892 GCAGCGCTTAGGAAAAAACGCCGCTAAAGATCATGTTCTTTA
1 GCGGCGCTTATGAAAAAACGCCGCTAAAGATCATGTTCTTTA
* * *
39543934 GCGGCGCTT-TGGATGAAAACGCCGCTAAA-AGTAATGTTCTATA
1 GCGGCGCTTAT-GA-AAAAACGCCGCTAAAGA-TCATGTTCTTTA
* **
39543977 GCGGCGCTTGTTCAAAAACGCCGCTAA
1 GCGGCGCTTATGAAAAAACGCCGCTAA
39544004 TAGTAGTGTT
Statistics
Matches: 213, Mismatches: 17, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
41 5 0.02
42 125 0.59
43 68 0.32
44 15 0.07
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (42 bp):
GCGGCGCTTATGAAAAAACGCCGCTAAAGATCATGTTCTTTA
Found at i:39543973 original size:127 final size:127
Alignment explanation
Indices: 39543721--39544003 Score: 369
Period size: 127 Copynumber: 2.2 Consensus size: 127
39543711 CTAACTTTTT
* * *
39543721 GCGGCGCTTACAGAAAAAAACTCCGCTAAAGATCATGTTCTTTAGCGGCGCTAAGAAAATAATCG
1 GCGGCGCTT--AGAAAAAAACGCCGCTAAAGATCATATTCTTTAGCAGCGCTAAGAAAATAATCG
* *
39543786 CCGCTAAAGATCATGTTCTTTAGCGGCGCTTATGAAAAAACGCCGCTAAAGATCACGTTCTTTA
64 CCGCTAAAGATCATGTTCTTTAGCGGCGCTTATGAAAAAACGCCGCTAAAGATAACGTTCTATA
* *
39543850 GCGGTGCTTAGAAAAAAACGCCGCTAAAGATCATATTCTTTAGCAGCGCTTAGGAAAA-AA-CGC
1 GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATATTCTTTAGCAGCGC-TAAGAAAATAATCGC
* *
39543913 CGCTAAAGATCATGTTCTTTAGCGGCGCTT-TGGATGAAAACGCCGCTAAA-AGTAATGTTCTAT
65 CGCTAAAGATCATGTTCTTTAGCGGCGCTTAT-GA-AAAAACGCCGCTAAAGA-TAACGTTCTAT
39543976 A
127 A
**
39543977 GCGGCGCTT-GTTCAAAAACGCCGCTAA
1 GCGGCGCTTAG-AAAAAAACGCCGCTAA
39544004 TAGTAGTGTT
Statistics
Matches: 137, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
125 1 0.01
126 37 0.27
127 84 0.61
128 7 0.05
129 8 0.06
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (127 bp):
GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATATTCTTTAGCAGCGCTAAGAAAATAATCGCC
GCTAAAGATCATGTTCTTTAGCGGCGCTTATGAAAAAACGCCGCTAAAGATAACGTTCTATA
Done.