Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 132 of 208
Found at i:40424951 original size:20 final size:20
Alignment explanation
Indices: 40424922--40424975 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
40424912 TTAGAGGGGT
* *
40424922 TGTACAGATACATCAGGAGA
1 TGTACTGATACATCAGGACA
* *
40424942 TGTACTGATACTATGAGGCCA
1 TGTACTGATAC-ATCAGGACA
*
40424963 TGTATTGATACAT
1 TGTACTGATACAT
40424976 GCCTCTCTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (20 bp):
TGTACTGATACATCAGGACA
Found at i:40440334 original size:25 final size:25
Alignment explanation
Indices: 40440274--40440354 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
40440264 GTACATGTAT
40440274 GCTCATACGAGC-G-ATAAACGGTAA
1 GCTCATACGAGCTGAAT-AACGGTAA
*
40440298 GCTCCT-CTGAGCTGAATAACGGTAA
1 GCTCATAC-GAGCTGAATAACGGTAA
* * *
40440323 GCTCATACGAGCTGAGTATCGGAAA
1 GCTCATACGAGCTGAATAACGGTAA
40440348 GCTCATA
1 GCTCATA
40440355 AGATCTAGAA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
23 1 0.02
24 9 0.19
25 35 0.73
26 3 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAACGGTAA
Found at i:40443098 original size:24 final size:24
Alignment explanation
Indices: 40443016--40443098 Score: 96
Period size: 24 Copynumber: 3.5 Consensus size: 24
40443006 CACACCACAG
*
40443016 CTCGTATGAGATTACCGATTTCAA
1 CTCGTATGAGCTTACCGATTTCAA
** * *
40443040 CTTATATGGGCTTACCGATTTCAG
1 CTCGTATGAGCTTACCGATTTCAA
*
40443064 CTCGTGA-GAGCTTACCGGTTTCAA
1 CTCGT-ATGAGCTTACCGATTTCAA
40443088 CTCGTATGAGC
1 CTCGTATGAGC
40443099 ATACATGTAC
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
23 1 0.02
24 45 0.96
25 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.33
Consensus pattern (24 bp):
CTCGTATGAGCTTACCGATTTCAA
Found at i:40443270 original size:17 final size:16
Alignment explanation
Indices: 40443244--40443275 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
40443234 AGGTATATAT
40443244 ATGAATTACATGGTAA
1 ATGAATTACATGGTAA
40443260 ATGATATTACATGGTA
1 ATGA-ATTACATGGTA
40443276 TATAGGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.41, C:0.06, G:0.19, T:0.34
Consensus pattern (16 bp):
ATGAATTACATGGTAA
Found at i:40448322 original size:17 final size:17
Alignment explanation
Indices: 40448292--40448324 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
40448282 ATGCGAACAT
40448292 AAAAATAAACTAAAATA
1 AAAAATAAACTAAAATA
40448309 AAAAACTAAA-TAAAAT
1 AAAAA-TAAACTAAAAT
40448325 TGTTTAAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAAATAAACTAAAATA
Found at i:40454196 original size:30 final size:28
Alignment explanation
Indices: 40454161--40454231 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 28
40454151 TATTTAAATC
* * *
40454161 TAAATTTTGAAATCTGAAAAGTAAAATGAT
1 TAAATTTT-AAATAT-AAAAATAAAAAGAT
40454191 TAAATTTCTTAAA-ATAAAAATAAAAAGAT
1 TAAA-TT-TTAAATATAAAAATAAAAAGAT
40454220 TAAATTTTAAAT
1 TAAATTTTAAAT
40454232 TTTCAAAGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
27 5 0.14
28 2 0.06
29 16 0.46
30 5 0.14
31 5 0.14
32 2 0.06
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (28 bp):
TAAATTTTAAATATAAAAATAAAAAGAT
Found at i:40457124 original size:70 final size:70
Alignment explanation
Indices: 40457016--40457595 Score: 426
Period size: 70 Copynumber: 8.3 Consensus size: 70
40457006 GGGAACATAA
* * ** * * * *
40457016 GCTCACGCTAACTGTTTTGGAGGCTATGGTATTGAACCTGCAAGCCTTAAGATGCCAACTAGGAG
1 GCTCGCGCTAACTATTTTGGAGGCTGCGATATTGAACCTGCAAGCCTTAGGATACCAACTGGGAG
*
40457081 TGTAG
66 CGTAG
* * * * **
40457086 GCTCGCACTAACTATTTTGGAGGTTGCAATATTAAACCTGCAAGCCTTAGGATACCAGTTGGGAG
1 GCTCGCGCTAACTATTTTGGAGGCTGCGATATTGAACCTGCAAGCCTTAGGATACCAACTGGGAG
*
40457151 CATAG
66 CGTAG
* * *** * *
40457156 GCTCGCGCTAACTATTTTGAAGGCTACGATATTGAACCTATGAGCCTTATGATACCAGCTGGGAG
1 GCTCGCGCTAACTATTTTGGAGGCTGCGATATTGAACCTGCAAGCCTTAGGATACCAACTGGGAG
** *
40457221 TATAA
66 CGTAG
* * * * * * * * * ** * *
40457226 GCTCACGATAACTGTTTTGAAGGTTGCGGTGTTGTACTTG-AGAGTTTTAGGATATCAATTGGGA
1 GCTCGCGCTAACTATTTTGGAGGCTGCGATATTGAACCTGCA-AGCCTTAGGATACCAACTGGGA
40457290 GCGTAG
65 GCGTAG
* * * * * *
40457296 GCTTGCGCTAACTATTTTAGAGGCTGTTG-TATTGAACCTGCGAGCCTTAGGACACCAGCTGGGA
1 GCTCGCGCTAACTATTTTGGAGGCTG-CGATATTGAACCTGCAAGCCTTAGGATACCAACTGGGA
40457360 GCGTAG
65 GCGTAG
* * * * * * * * **
40457366 GCTTGCACTAATTGTTTTGGAGGCTGTGATATTGAACCTACAAGCCTTAAGATATCAGTTGGGAG
1 GCTCGCGCTAACTATTTTGGAGGCTGCGATATTGAACCTGCAAGCCTTAGGATACCAACTGGGAG
* *
40457431 TGTAA
66 CGTAG
* * * ** * * ** * * *
40457436 GCTCGTGTTAACTGTTTTGGAGGCTATGGTATTAAACCTGTGAGTCTTAGGATATCAACTAGGAG
1 GCTCGCGCTAACTATTTTGGAGGCTGCGATATTGAACCTGCAAGCCTTAGGATACCAACTGGGAG
40457501 CGTAG
66 CGTAG
** * * * * *
40457506 ATTCGCGCTAACTATTTTGGAGGCTACGATATTAAACCTACAAGCCTTAGGATATCAACTAGGAG
1 GCTCGCGCTAACTATTTTGGAGGCTGCGATATTGAACCTGCAAGCCTTAGGATACCAACTGGGAG
40457571 CGTAG
66 CGTAG
* *
40457576 GTTCGTGCTAACTATTTTGG
1 GCTCGCGCTAACTATTTTGG
40457596 GGGTTGTGTG
Statistics
Matches: 396, Mismatches: 110, Indels: 8
0.77 0.21 0.02
Matches are distributed among these distances:
69 2 0.01
70 393 0.99
71 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (70 bp):
GCTCGCGCTAACTATTTTGGAGGCTGCGATATTGAACCTGCAAGCCTTAGGATACCAACTGGGAG
CGTAG
Found at i:40457221 original size:140 final size:140
Alignment explanation
Indices: 40456959--40457594 Score: 522
Period size: 140 Copynumber: 4.5 Consensus size: 140
40456949 CCTCGAGCTG
* * ** * ** * * * * *
40456959 TTTTGGAGGTTGCAATCTTAAGTCGGCAAGCCTTTATAATATCATTTGGGAACATAAGCTCACGC
1 TTTTGGAGGTTGCGATATTAAACCTGCAAGCC-TTAGGATATCAATTGGGAGCGTAGGCTCGCGC
* * * * * *
40457024 TAACTGTTTTGGAGGCTATGGTATTGAACCTGCAAGCCTTAAGATGCCAACTAGGAGTGTAGGCT
65 TAACTATTTTGAAGGCTATGGTATTGAACCTGCGAGCCTTAGGATACCAACTAGGAGCGTAGGCT
40457089 CGCACTAACTA
130 CGCACTAACTA
* * * *
40457100 TTTTGGAGGTTGCAATATTAAACCTGCAAGCCTTAGGATACCAGTTGGGAGCATAGGCTCGCGCT
1 TTTTGGAGGTTGCGATATTAAACCTGCAAGCCTTAGGATATCAATTGGGAGCGTAGGCTCGCGCT
* * ** * * * ** *
40457165 AACTATTTTGAAGGCTACGATATTGAACCTATGAGCCTTATGATACCAGCTGGGAGTATAAGCTC
66 AACTATTTTGAAGGCTATGGTATTGAACCTGCGAGCCTTAGGATACCAACTAGGAGCGTAGGCTC
* *
40457230 ACGA-TAACTG
131 GC-ACTAACTA
* * * ** * ** *
40457240 TTTTGAAGGTTGCGGTGTTGTACTTG-AGAGTTTTAGGATATCAATTGGGAGCGTAGGCTTGCGC
1 TTTTGGAGGTTGCGATATTAAACCTGCA-AGCCTTAGGATATCAATTGGGAGCGTAGGCTCGCGC
* * * * *
40457304 TAACTATTTT-AGAGGCTGTTGTATTGAACCTGCGAGCCTTAGGACACCAGCTGGGAGCGTAGGC
65 TAACTATTTTGA-AGGCTATGGTATTGAACCTGCGAGCCTTAGGATACCAACTAGGAGCGTAGGC
* * *
40457368 TTGCACTAATTG
129 TCGCACTAACTA
* * * * * * * * * *
40457380 TTTTGGAGGCTGTGATATTGAACCTACAAGCCTTAAGATATCAGTTGGGAGTGTAAGCTCGTGTT
1 TTTTGGAGGTTGCGATATTAAACCTGCAAGCCTTAGGATATCAATTGGGAGCGTAGGCTCGCGCT
* * * * * * **
40457445 AACTGTTTTGGAGGCTATGGTATTAAACCTGTGAGTCTTAGGATATCAACTAGGAGCGTAGATTC
66 AACTATTTTGAAGGCTATGGTATTGAACCTGCGAGCCTTAGGATACCAACTAGGAGCGTAGGCTC
*
40457510 GCGCTAACTA
131 GCACTAACTA
* * * * * * *
40457520 TTTTGGAGGCTACGATATTAAACCTACAAGCCTTAGGATATCAACTAGGAGCGTAGGTTCGTGCT
1 TTTTGGAGGTTGCGATATTAAACCTGCAAGCCTTAGGATATCAATTGGGAGCGTAGGCTCGCGCT
40457585 AACTATTTTG
66 AACTATTTTG
40457595 GGGGTTGTGT
Statistics
Matches: 390, Mismatches: 99, Indels: 13
0.78 0.20 0.03
Matches are distributed among these distances:
139 3 0.01
140 357 0.92
141 30 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (140 bp):
TTTTGGAGGTTGCGATATTAAACCTGCAAGCCTTAGGATATCAATTGGGAGCGTAGGCTCGCGCT
AACTATTTTGAAGGCTATGGTATTGAACCTGCGAGCCTTAGGATACCAACTAGGAGCGTAGGCTC
GCACTAACTA
Found at i:40457399 original size:210 final size:210
Alignment explanation
Indices: 40457012--40457594 Score: 585
Period size: 210 Copynumber: 2.8 Consensus size: 210
40457002 ATTTGGGAAC
* * * * * * **
40457012 ATAAGCTCACGCTAACTGTTTTGGAGGCTATGGTATTGAACCTGCA-AGCCTTAAGATGCCAACT
1 ATAAGCTCACGATAACTGTTTTGAAGGCTACGGTATTAAACCTG-AGAGTCTTAGGATATCAACT
* * * * *
40457076 AGGAGTGTAGGCTCGCACTAACTATTTTGGAGGTTGCAATATTAAACCTGCAAGCCTTAGGATAC
65 AGGAGCGTAGGCTTGCGCTAACTATTTTGGAGGCTGCAATATTAAACCTGCAAGCCTTAGGACAC
* * ** *
40457141 CAGTTGGGAGCATAGGCTCGCGCTAACTATTTTGAAGGCTACGATATTGAACCTATGAGCCTTAT
130 CAGCTGGGAGCATAGGCTCGCACTAACTATTTTGAAGGCTACGATATTGAACCTACAAGCCTTAA
40457206 GATACCAGCTGGGAGT
195 GATACCAGCTGGGAGT
* * * ** * * * *
40457222 ATAAGCTCACGATAACTGTTTTGAAGGTTGCGGTGTTGTACTTGAGAGTTTTAGGATATCAATTG
1 ATAAGCTCACGATAACTGTTTTGAAGGCTACGGTATTAAACCTGAGAGTCTTAGGATATCAACTA
* *** * *
40457287 GGAGCGTAGGCTTGCGCTAACTATTTTAGAGGCTGTTGTATTGAACCTGCGAGCCTTAGGACACC
66 GGAGCGTAGGCTTGCGCTAACTATTTTGGAGGCTGCAATATTAAACCTGCAAGCCTTAGGACACC
* * * * * **
40457352 AGCTGGGAGCGTAGGCTTGCACTAATTGTTTTGGAGGCTGTGATATTGAACCTACAAGCCTTAAG
131 AGCTGGGAGCATAGGCTCGCACTAACTATTTTGAAGGCTACGATATTGAACCTACAAGCCTTAAG
* *
40457417 ATATCAGTTGGGAGT
196 ATACCAGCTGGGAGT
* ** * * * *
40457432 GTAAGCTCGTGTTAACTGTTTTGGAGGCTATGGTATTAAACCTGTGAGTCTTAGGATATCAACTA
1 ATAAGCTCACGATAACTGTTTTGAAGGCTACGGTATTAAACCTGAGAGTCTTAGGATATCAACTA
* * * * * *
40457497 GGAGCGTA-GATTCGCGCTAACTATTTTGGAGGCTACGATATTAAACCTACAAGCCTTAGGATAT
66 GGAGCGTAGGCTT-GCGCTAACTATTTTGGAGGCTGCAATATTAAACCTGCAAGCCTTAGGACAC
* * * * **
40457561 CAACTAGGAGCGTAGGTTCGTGCTAACTATTTTG
130 CAGCTGGGAGCATAGGCTCGCACTAACTATTTTG
40457595 GGGGTTGTGT
Statistics
Matches: 296, Mismatches: 75, Indels: 4
0.79 0.20 0.01
Matches are distributed among these distances:
209 4 0.01
210 292 0.99
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (210 bp):
ATAAGCTCACGATAACTGTTTTGAAGGCTACGGTATTAAACCTGAGAGTCTTAGGATATCAACTA
GGAGCGTAGGCTTGCGCTAACTATTTTGGAGGCTGCAATATTAAACCTGCAAGCCTTAGGACACC
AGCTGGGAGCATAGGCTCGCACTAACTATTTTGAAGGCTACGATATTGAACCTACAAGCCTTAAG
ATACCAGCTGGGAGT
Found at i:40458852 original size:40 final size:40
Alignment explanation
Indices: 40458793--40458959 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
40458783 CAAGGAACCA
* ** *
40458793 AAGTACAAA-AGGGGCATGTAGGTGAAATCAGGGGTACCG
1 AAGTACAAACAAGGGCATGTATATGCAATCAGGGGTACCG
*
40458832 AAGTACAAACAAGGGCATGTATATGCAATTAGGGGTACCG
1 AAGTACAAACAAGGGCATGTATATGCAATCAGGGGTACCG
* * *
40458872 AAGTACAAAC-AGAGGCACGTATATGCAATCAGGCGTACTG
1 AAGTACAAACAAG-GGCATGTATATGCAATCAGGGGTACCG
* * * * * *
40458912 AAGTACAAAC-AGTGACACGTCTATGCAATCAGAGCTATCG
1 AAGTACAAACAAG-GGCATGTATATGCAATCAGGGGTACCG
40458952 AAGTACAA
1 AAGTACAA
40458960 TAATTTTCTA
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
39 11 0.10
40 98 0.90
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.18
Consensus pattern (40 bp):
AAGTACAAACAAGGGCATGTATATGCAATCAGGGGTACCG
Found at i:40461151 original size:51 final size:51
Alignment explanation
Indices: 40461079--40461181 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
40461069 GTGCAGCAGT
* * *
40461079 AACATTATCCAGTCCATCTGATGTTGCAAAATCACTAGCATATTCATCAGC
1 AACATTATCCACTCCATCTGATGTTACAAAATCACCAGCATATTCATCAGC
40461130 AACATTATCCACTCCATCTGATGTTACAAAATCACCAGCATATTCATCAGC
1 AACATTATCCACTCCATCTGATGTTACAAAATCACCAGCATATTCATCAGC
40461181 A
1 A
40461182 GCAACTTCAC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (51 bp):
AACATTATCCACTCCATCTGATGTTACAAAATCACCAGCATATTCATCAGC
Found at i:40461390 original size:33 final size:33
Alignment explanation
Indices: 40461308--40461421 Score: 117
Period size: 33 Copynumber: 3.5 Consensus size: 33
40461298 TACCTCTCCT
* * *
40461308 ACATCACCCTTCCCACCAAATTCTACCTTTTACA
1 ACATCACCCTCCCCATCAAATTCTACCCTTT-CA
* *
40461342 A-ATCACCTTCACCATCAAATTCTACCCTTTCA
1 ACATCACCCTCCCCATCAAATTCTACCCTTTCA
* *
40461374 TA-ATCACCCTCCCCATCAACTTCCACCCCTTT-A
1 -ACATCACCCTCCCCATCAAATTCTA-CCCTTTCA
40461407 ACATCACCCTCCCCA
1 ACATCACCCTCCCCA
40461422 AATGTCAACA
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
32 3 0.04
33 58 0.85
34 7 0.10
ACGTcount: A:0.28, C:0.45, G:0.00, T:0.27
Consensus pattern (33 bp):
ACATCACCCTCCCCATCAAATTCTACCCTTTCA
Found at i:40462440 original size:16 final size:16
Alignment explanation
Indices: 40462421--40462468 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
40462411 GAATGCTAAC
*
40462421 GATTTAAGGATTTCAA
1 GATTTAAGGATTTAAA
*
40462437 GATTTAGGGATTTAAA
1 GATTTAAGGATTTAAA
*
40462453 GATTTTAAAGATTTAA
1 GA-TTTAAGGATTTAA
40462469 TAAAGATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 16 0.59
17 11 0.41
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (16 bp):
GATTTAAGGATTTAAA
Found at i:40462456 original size:8 final size:8
Alignment explanation
Indices: 40462421--40462468 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
40462411 GAATGCTAAC
*
40462421 GATTTAAG
1 GATTTAAA
*
40462429 GATTTCAA
1 GATTTAAA
**
40462437 GATTTAGG
1 GATTTAAA
40462445 GATTTAAA
1 GATTTAAA
40462453 GATTTTAAA
1 GA-TTTAAA
40462462 GATTTAA
1 GATTTAA
40462469 TAAAGATTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
8 24 0.75
9 8 0.25
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (8 bp):
GATTTAAA
Found at i:40466145 original size:19 final size:19
Alignment explanation
Indices: 40466121--40466160 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
40466111 TGCAAGTCTG
40466121 ATTGTACTCTCTATCCTTA
1 ATTGTACTCTCTATCCTTA
40466140 ATTGTACTCTCTATCCTTA
1 ATTGTACTCTCTATCCTTA
40466159 AT
1 AT
40466161 ATAACTCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.25, G:0.05, T:0.47
Consensus pattern (19 bp):
ATTGTACTCTCTATCCTTA
Found at i:40467329 original size:67 final size:68
Alignment explanation
Indices: 40467155--40467319 Score: 210
Period size: 67 Copynumber: 2.5 Consensus size: 68
40467145 GTGGATTCCA
* * * * *
40467155 TATGCTGTCATAGTTGG-GCTATGGTCTTACACATCATACCCCATGTTTAATATCCTGGTAGACT
1 TATGTTGTCATAGTCGGAGCTATGGTCTTACACATCATACCCCATGTTTAATAGCCTAGCAGACT
40467219 CTC
66 CTC
* * * * * *
40467222 TATGTTGTCATAGTC-AAACTATGGTCTTGCACATCATACCCTATGTTTAATGGCCTAGCGGACT
1 TATGTTGTCATAGTCGGAGCTATGGTCTTACACATCATACCCCATGTTTAATAGCCTAGCAGACT
40467286 CTC
66 CTC
40467289 TATGTTGTCATAG-CGGAGCTATGGTCTTACA
1 TATGTTGTCATAGTCGGAGCTATGGTCTTACA
40467320 TGTTATACCC
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
66 1 0.01
67 81 0.99
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.35
Consensus pattern (68 bp):
TATGTTGTCATAGTCGGAGCTATGGTCTTACACATCATACCCCATGTTTAATAGCCTAGCAGACT
CTC
Found at i:40468297 original size:13 final size:13
Alignment explanation
Indices: 40468279--40468331 Score: 79
Period size: 13 Copynumber: 4.1 Consensus size: 13
40468269 AGTTTGGCAA
40468279 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
40468292 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
***
40468305 TGCTGCGGAAAAG
1 TGCTTTTGAAAAG
40468318 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
40468331 T
1 T
40468332 TTGGTTTAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.30, C:0.09, G:0.26, T:0.34
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:40475702 original size:40 final size:40
Alignment explanation
Indices: 40475657--40475813 Score: 167
Period size: 40 Copynumber: 3.9 Consensus size: 40
40475647 ACTATGTTTA
*
40475657 GCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATTTATG
1 GCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATATATG
* * *
40475697 ACACTTAGTGTGCGA-TTGGGAATAGCTTCAGCTATATATG
1 GCACTTAGTGTGCGATTTGAG-ATAGCTTCGGCTATATATG
** * * *
40475737 GCACTTAGTGTGCGAGACTGAGATAGGTTCGGCTATGTAAG
1 GCACTTAGTGTGCGA-TTTGAGATAGCTTCGGCTATATATG
40475778 GCACTTAGTGTGCGGGATTAT-A-ATAGCTTCGGCTAT
1 GCACTTAGTGTGC--GATT-TGAGATAGCTTCGGCTAT
40475814 GCAATTGCAT
Statistics
Matches: 97, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
39 4 0.04
40 45 0.46
41 41 0.42
42 4 0.04
43 3 0.03
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATATATG
Found at i:40475784 original size:41 final size:41
Alignment explanation
Indices: 40475657--40475813 Score: 169
Period size: 41 Copynumber: 3.9 Consensus size: 41
40475647 ACTATGTTTA
* *
40475657 GCACTTAGTGTGCGA-TTTGAGATAGCTTCGGCTATTTATG
1 GCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATG
* * *
40475697 ACACTTAGTGTGC--GATTGGGAATAGCTTCAGCTATATATG
1 GCACTTAGTGTGCGAGATTGAG-ATAGCTTCGGCTATATATG
* * * *
40475737 GCACTTAGTGTGCGAGACTGAGATAGGTTCGGCTATGTAAG
1 GCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATG
* *
40475778 GCACTTAGTGTGCGGGATT-ATAATAGCTTCGGCTAT
1 GCACTTAGTGTGCGAGATTGA-GATAGCTTCGGCTAT
40475814 GCAATTGCAT
Statistics
Matches: 96, Mismatches: 16, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
39 4 0.04
40 42 0.44
41 45 0.47
42 5 0.05
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (41 bp):
GCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATG
Found at i:40475814 original size:41 final size:40
Alignment explanation
Indices: 40475657--40475833 Score: 137
Period size: 41 Copynumber: 4.3 Consensus size: 40
40475647 ACTATGTTTA
* *
40475657 GCACTTAGTGTGC-GATT-TGAGATAGCTTCGGCTATTTATG
1 GCACTTAGTGTGCGGATTAT-A-ATAGCTTCGGCTATGTAAG
* ** * * *
40475697 ACACTTAGTGTGC-GATTGGGAATAGCTTCAGCTATATATG
1 GCACTTAGTGTGCGGATT-ATAATAGCTTCGGCTATGTAAG
* * *
40475737 GCACTTAGTGTGCGAGACTGA-GATAGGTTCGGCTATGTAAG
1 GCACTTAGTGTGCG-GA-TTATAATAGCTTCGGCTATGTAAG
* *
40475778 GCACTTAGTGTGCGGGATTATAATAGCTTCGGCTATGCAATT
1 GCACTTAGTGTGC-GGATTATAATAGCTTCGGCTATGTAA-G
*
40475820 GCATTTAGTGTGCG
1 GCACTTAGTGTGCG
40475834 AAACATTAAG
Statistics
Matches: 111, Mismatches: 18, Indels: 15
0.77 0.12 0.10
Matches are distributed among these distances:
40 47 0.42
41 48 0.43
42 15 0.14
43 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGCGGATTATAATAGCTTCGGCTATGTAAG
Found at i:40478587 original size:40 final size:40
Alignment explanation
Indices: 40478543--40478674 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 40
40478533 AGTTTGGCAT
*
40478543 CCAGTGCCTCATCGGATAATTCAAAGTAATAAGTTGACAC
1 CCAGTGCCTCATCGGATAATCCAAAGTAATAAGTTGACAC
* * * *
40478583 CCAGTGTCTCATCGGCTAAACCAAAGT-A-AA-TTGGCAC
1 CCAGTGCCTCATCGGATAATCCAAAGTAATAAGTTGACAC
* * * *
40478620 CTAATGCCTCATCGAATTAATCCGAAGTAAT-AGATTGACAC
1 CCAGTGCCTCATCGGA-TAATCCAAAGTAATAAG-TTGACAC
*
40478661 CCAGTGTCTCATCG
1 CCAGTGCCTCATCG
40478675 ACTCGAGGTC
Statistics
Matches: 71, Mismatches: 16, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
37 17 0.24
38 11 0.15
39 3 0.04
40 23 0.32
41 17 0.24
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (40 bp):
CCAGTGCCTCATCGGATAATCCAAAGTAATAAGTTGACAC
Found at i:40479489 original size:41 final size:43
Alignment explanation
Indices: 40479424--40479506 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 43
40479414 TTTTTCTTTA
*
40479424 TTTAATTATTATAATATAATATAATATATATTTAAATTTTAAGT
1 TTTAATTATTATAATAT-ATATAATATATATTTAAACTTTAAGT
* *
40479468 TTTAA-TATTTTAATAT-TATAATATATATTTTAACTTTAA
1 TTTAATTATTATAATATATATAATATATATTTAAACTTTAA
40479507 AACTTCATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
41 21 0.58
43 10 0.28
44 5 0.14
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (43 bp):
TTTAATTATTATAATATATATAATATATATTTAAACTTTAAGT
Found at i:40482523 original size:13 final size:14
Alignment explanation
Indices: 40482505--40482540 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
40482495 CCCCTCCCCC
40482505 AAAAGAAAAA-AAA
1 AAAAGAAAAAGAAA
40482518 AAAAGAAAAAGAAA
1 AAAAGAAAAAGAAA
*
40482532 GAAAGAAAA
1 AAAAGAAAA
40482541 CTTTAAGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAGAAA
Found at i:40491644 original size:97 final size:95
Alignment explanation
Indices: 40491542--40491814 Score: 271
Period size: 85 Copynumber: 2.9 Consensus size: 95
40491532 TTTTGGGTAG
* *
40491542 ATTAAGATAATTAGGAGTTTAAAATAAATTAGGATCATTAGAGTTTTAATTTAGATAAGATAATT
1 ATTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAGATAAGATAATT
*
40491607 ACAAATTTAATTAATAGGTTAGATAAATTTTA
66 A-AAATTTAATTAATAGGTT-GATAAATTTAA
* * * *
40491639 ATTAAGATAATTGGGATTTTAAATTAAATTAGGATAATTAGAGTTCTAATTT--A-AA-TTAA-T
1 ATTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAGATAAGATAATT
* * *
40491699 -ATA-TTAGA-TAATA--TT-TTAGATTTAA
66 AAAATTTA-ATTAATAGGTTGATAAATTTAA
* * * * **
40491724 ATTAAGATATTTAGGAGTTTAAATTACACTAGGATAATTAGATTTTTAATTTAGATGTGATAATT
1 ATTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAGATAAGATAATT
*
40491789 AGGAATTTAATTAATAGGTTGGATAA
66 A-AAATTTAATTAATAGGTT-GATAA
40491815 TAATTTAGAT
Statistics
Matches: 138, Mismatches: 24, Indels: 28
0.73 0.13 0.15
Matches are distributed among these distances:
85 52 0.38
87 3 0.02
89 11 0.08
90 4 0.03
92 3 0.02
93 11 0.08
94 2 0.01
95 3 0.02
97 49 0.36
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41
Consensus pattern (95 bp):
ATTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAGATAAGATAATT
AAAATTTAATTAATAGGTTGATAAATTTAA
Found at i:40493332 original size:29 final size:26
Alignment explanation
Indices: 40493284--40493340 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 26
40493274 ATTATTAAAA
40493284 TAAAATAAAAATATTAAATAATTTAT
1 TAAAATAAAAATATTAAATAATTTAT
*
40493310 TAAAATAATAAATTATGTTAATAATTTAT
1 TAAAATAA-AAA-TAT-TAAATAATTTAT
40493339 TA
1 TA
40493341 TATGATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.30
27 3 0.11
28 3 0.11
29 13 0.48
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (26 bp):
TAAAATAAAAATATTAAATAATTTAT
Found at i:40494784 original size:20 final size:20
Alignment explanation
Indices: 40494750--40494791 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
40494740 AAATATTTAA
** *
40494750 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
40494770 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
40494790 AT
1 AT
40494792 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:40500791 original size:22 final size:22
Alignment explanation
Indices: 40500764--40500805 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
40500754 ATCAAGACTG
40500764 ATAATATATTTATAATCTATCT
1 ATAATATATTTATAATCTATCT
*
40500786 ATAATATATTTATATTCTAT
1 ATAATATATTTATAATCTAT
40500806 TTAAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (22 bp):
ATAATATATTTATAATCTATCT
Found at i:40500806 original size:11 final size:11
Alignment explanation
Indices: 40500764--40500808 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
40500754 ATCAAGACTG
*
40500764 ATAATATATTT
1 ATAATCTATTT
*
40500775 ATAATCTATCT
1 ATAATCTATTT
*
40500786 ATAATATATTT
1 ATAATCTATTT
*
40500797 ATATTCTATTT
1 ATAATCTATTT
40500808 A
1 A
40500809 AAAATATGAG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (11 bp):
ATAATCTATTT
Found at i:40503179 original size:42 final size:42
Alignment explanation
Indices: 40503077--40503191 Score: 158
Period size: 42 Copynumber: 2.7 Consensus size: 42
40503067 CGATTTAGCT
* * *
40503077 GATGATGCACTTATGTGCCAGTATAATTGCTTCGGTATATCT
1 GATGATGCACTTATGTGCTAGTATAATTGCTTCGATATATCC
* *
40503119 TATGATGCACTTGTGTGCTAGTATAATTGCTTCGATATATCC
1 GATGATGCACTTATGTGCTAGTATAATTGCTTCGATATATCC
* * *
40503161 GATGATGCACTTACGTGCTAGAATGATTGCT
1 GATGATGCACTTATGTGCTAGTATAATTGCT
40503192 CTAGTTTATT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (42 bp):
GATGATGCACTTATGTGCTAGTATAATTGCTTCGATATATCC
Found at i:40506898 original size:23 final size:23
Alignment explanation
Indices: 40506871--40506916 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
40506861 TTATGGCACA
*
40506871 TTTGTGGCGTATTATGTGATGCC
1 TTTGTGGCGTATTATGTAATGCC
* *
40506894 TTTGTGGTGTATTTTGTAATGCC
1 TTTGTGGCGTATTATGTAATGCC
40506917 CTAGAGGCGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.13, C:0.11, G:0.28, T:0.48
Consensus pattern (23 bp):
TTTGTGGCGTATTATGTAATGCC
Found at i:40529753 original size:25 final size:25
Alignment explanation
Indices: 40529719--40529769 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
40529709 CAGCCAAAGT
40529719 ATTGCAAGCCAGATTTTTTTGGCTA
1 ATTGCAAGCCAGATTTTTTTGGCTA
40529744 ATTGCAAGCCAGATTTTTTTGGCTA
1 ATTGCAAGCCAGATTTTTTTGGCTA
40529769 A
1 A
40529770 CACTATTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (25 bp):
ATTGCAAGCCAGATTTTTTTGGCTA
Found at i:40535965 original size:16 final size:18
Alignment explanation
Indices: 40535939--40535971 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
40535929 TTTAATTAGA
40535939 TAAATTAATTTT-TCAAT
1 TAAATTAATTTTCTCAAT
40535956 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
40535972 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:40537989 original size:16 final size:16
Alignment explanation
Indices: 40537968--40537998 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
40537958 CTCCCAAGAC
40537968 ACACCTCAACCTTATA
1 ACACCTCAACCTTATA
*
40537984 ACACCTCAATCTTAT
1 ACACCTCAACCTTAT
40537999 CCATTTATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
ACACCTCAACCTTATA
Found at i:40539686 original size:22 final size:22
Alignment explanation
Indices: 40539673--40539734 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
40539663 TTTTGACTAG
40539673 ATAGATAATCTATTTAAACATA
1 ATAGATAATCTATTTAAACATA
*
40539695 TTAGATAATCTATTTAAACATA
1 ATAGATAATCTATTTAAACATA
* *
40539717 GTATATAAT-TATGTTAAA
1 ATAGATAATCTAT-TTAAA
40539735 TAAGTTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 3 0.08
22 33 0.92
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.40
Consensus pattern (22 bp):
ATAGATAATCTATTTAAACATA
Found at i:40539775 original size:16 final size:15
Alignment explanation
Indices: 40539754--40539783 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
40539744 TTATAGAATT
40539754 ATATAATATACATAAA
1 ATATAATATA-ATAAA
40539770 ATATAATATAATAA
1 ATATAATATAATAA
40539784 TTATTTTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
ATATAATATAATAAA
Found at i:40539925 original size:15 final size:15
Alignment explanation
Indices: 40539895--40539923 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
40539885 ACTATTAGTA
40539895 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
40539910 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
40539924 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:40545062 original size:19 final size:19
Alignment explanation
Indices: 40545040--40545078 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
40545030 TCAATATTAG
*
40545040 ACCCAATAAGCATATGCTA
1 ACCCAATAAGCATATACTA
40545059 ACCCAATAAGCATATACTA
1 ACCCAATAAGCATATACTA
40545078 A
1 A
40545079 GCATCAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.26, G:0.08, T:0.21
Consensus pattern (19 bp):
ACCCAATAAGCATATACTA
Found at i:40545889 original size:246 final size:246
Alignment explanation
Indices: 40545211--40546338 Score: 1805
Period size: 246 Copynumber: 4.6 Consensus size: 246
40545201 AAAACCTTCA
* * * * *
40545211 AATAGATCCATTTTGACTTGGAACATCCATTGATTTGTAGACTTCCTCTAAAAAATCAAGAT-CA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCC-CTCAAAATTCAAGATCCA
* * *
40545275 CCATTAAAGCACCTTAAGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCTC
65 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCA-CTC
* * *
40545339 AAATCATGTAAATAAGCTTCTAATCATCACAACAATAAGTTTAGAAATAATAATTACCTTTAATT
129 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
*
40545404 CGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
194 CGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
*
40545457 AATAGATACATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCCATCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCC-TCAAAATTCAAGATCCA
* * *
40545522 CCATTAAACCACCTTAAGATTTTGAAGAAGATGGCATTAATAAAAAATCATGCAATTATCACTCA
65 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCA
* *
40545587 AATCATGTAAATATGCTTCTAAACATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTC
130 AATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATTC
* *
40545652 GTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
195 GTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
*
40545704 AATAGATCCATTTTGAGGTGGAACATCCATTGATTTGTGGATTTCCCTCAAAATTCAAGATCCAC
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCCTCAAAATTCAAGATCCAC
*
40545769 CATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATTAAAAATCATGCAATTATCACTCAA
66 CATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAA
* * *
40545834 ATCATGTAAATATGATTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATCCG
131 ATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATTCG
* *
40545899 TTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
196 TTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
* *
40545950 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCGTCTAAAAATTCAAGAT-CA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTC-CCTCAAAATTCAAGATCCA
* * * * * *
40546014 CCATTAAAGCATCTTACGCTTTTGAAGGATATGACAGTAATAAAAAATCATGCAATTAT-ATCTC
65 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCA-CTC
* * *
40546078 AAATCATGTAAATATGCTTCTAATCATCAAAAAAATAAGTTTAGAAATAATAATCACATTTAATT
129 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
*
40546143 CGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
194 CGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
*
40546196 AATAGATCCATTTTGAGCTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCC-CTCAAAATTCAAGATCCA
*
40546261 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATTAAAAATCATGCAATTATCACTCA
65 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCA
40546326 AATCATGTAAATA
130 AATCATGTAAATA
40546339 NNNNNNNNNN
Statistics
Matches: 817, Mismatches: 57, Indels: 15
0.92 0.06 0.02
Matches are distributed among these distances:
245 2 0.00
246 514 0.63
247 299 0.37
248 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (246 bp):
AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCCTCAAAATTCAAGATCCAC
CATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAA
ATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATTCG
TTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
Found at i:40546249 original size:493 final size:494
Alignment explanation
Indices: 40545211--40546338 Score: 1838
Period size: 493 Copynumber: 2.3 Consensus size: 494
40545201 AAAACCTTCA
* * * *
40545211 AATAGATCCATTTTGA-CTTGGAACATCCATTGATTTGTAGACTTCCTCTAAAAAATCAAGAT-C
1 AATAGATCCATTTTGAGC-TGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * *
40545274 ACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCT
65 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATTAAAAATCATGCAATTATCA-CT
* *
40545338 CAAATCATGTAAATAAGCTTCTAATCATCACAACAATAAGTTTAGAAATAATAATTACCTTTAAT
129 CAAATCATGTAAATAAGATTCTAATCATCACAAAAATAAGTTTAGAAATAATAATTACCTTTAAT
* *
40545403 TCGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCTAATAGATACAT
194 CCGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATACAT
*
40545468 TTTGAGTTGGAACATCCATTGATTTGTGGATTTCCCATCAAAATTCAAGATCCACCATTAAACCA
259 TTTGAGTTGGAACATCCATTGATTTGTGGATTTCCCATAAAAATTCAAGATCCACCATTAAACCA
* *
40545533 CCTTAAGATTTTGAAGAAGATGGCATTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAA
324 CCTTAAGATTTTGAAGAAGATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAA
* * * * * *
40545598 TATGCTTCTAAACATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTC
389 TATGCTTCTAAACATCAAAAAAATAAGTTTAGAAATAATAATCACATTTAATTCGTTCTAAATCC
40545663 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
454 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
*
40545704 AATAGATCCATTTTGAGGTGGAACATCCATTGATTTGTGGATTTCC-CTCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGCTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
40545768 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATTAAAAATCATGCAATTATCACTCA
66 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATTAAAAATCATGCAATTATCACTCA
* * *
40545833 AATCATGTAAATATGATTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATCC
131 AATCATGTAAATAAGATTCTAATCATCACAAAAATAAGTTTAGAAATAATAATTACCTTTAATCC
* * *
40545898 GTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTT
196 GTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATACATTT
* * *
40545963 TGAGTTGGAACATCCATTGATTTGTGGATTTCGTC-TAAAAATTCAAGAT-CACCATTAAAGCAT
261 TGAGTTGGAACATCCATTGATTTGTGGATTTC-CCATAAAAATTCAAGATCCACCATTAAACCAC
* * * *
40546026 CTTACGCTTTTGAAGGATATGACAGTAATAAAAAATCATGCAATTAT-ATCTCAAATCATGTAAA
325 CTTAAGATTTTGAAGAAGATGACAGTAATAAAAAATCATGCAATTATCA-CTCAAATCATGTAAA
*
40546090 TATGCTTCTAATCATCAAAAAAATAAGTTTAGAAATAATAATCACATTTAATTCGTTCTAAATCC
389 TATGCTTCTAAACATCAAAAAAATAAGTTTAGAAATAATAATCACATTTAATTCGTTCTAAATCC
*
40546155 TTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
454 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
40546196 AATAGATCCATTTTGAGCTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGCTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
40546261 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATTAAAAATCATGCAATTATCACTCA
66 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATTAAAAATCATGCAATTATCACTCA
40546326 AATCATGTAAATA
131 AATCATGTAAATA
40546339 NNNNNNNNNN
Statistics
Matches: 591, Mismatches: 38, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
491 1 0.00
492 224 0.38
493 364 0.62
494 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (494 bp):
AATAGATCCATTTTGAGCTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATTAAAAATCATGCAATTATCACTCA
AATCATGTAAATAAGATTCTAATCATCACAAAAATAAGTTTAGAAATAATAATTACCTTTAATCC
GTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATACATTT
TGAGTTGGAACATCCATTGATTTGTGGATTTCCCATAAAAATTCAAGATCCACCATTAAACCACC
TTAAGATTTTGAAGAAGATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATA
TGCTTCTAAACATCAAAAAAATAAGTTTAGAAATAATAATCACATTTAATTCGTTCTAAATCCTT
TGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
Found at i:40547249 original size:247 final size:247
Alignment explanation
Indices: 40546789--40547978 Score: 1820
Period size: 247 Copynumber: 4.8 Consensus size: 247
40546779 NNNNNNNNNN
* *
40546789 GAAGATGACATTAATAAAAAAATTATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCA
1 GAAGATGACACTAAT-AAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCA
* * * * * *
40546854 TCACAAAAATAAGTTTAGAAATAATAATCACATTTAATTCGTCCTAAATCCTTTGATTGGAAATC
65 TCATAAAAATAAGTTTAGAAATAATAATTACATTTGATTCGTTCTAAATTCTTTGATTGAAAATC
40546919 TTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGT
130 TTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGT
*
40546984 GGATTTCC-CATAAAAATTCAAGATCCACCATTAAAGCACCTTACA-ATTTTGAA
195 GGATTTCCTC-TCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGATTTTGAA
* * *
40547037 GAATATGACAGTAATAAAAAATCATGCAATTAT-ATCTCAAATCATGTAAATATGATTCTAATCA
1 GAAGATGACACTAATAAAAAATCATGCAATTATCA-CTCAAATCATGTAAATATGCTTCTAATCA
* * * * * *
40547101 TCACAAAAATAAGTTTAGAAATAATTATTACATTTAATTTGTTCTAAATCCTTTGATTGAAAAGC
65 TCATAAAAATAAGTTTAGAAATAATAATTACATTTGATTCGTTCTAAATTCTTTGATTGAAAATC
40547166 TTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGT
130 TTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGT
*
40547231 GAATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAA
195 GGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAA
* *
40547284 AAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATTATGTAAATATGCTTCTAATCAT
1 GAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCAT
*
40547349 CATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAAATTCTTTGATTGAAAATCT
66 CATAAAAATAAGTTTAGAAATAATAATTACATTTGATTCGTTCTAAATTCTTTGATTGAAAATCT
* * *
40547414 TGATTCAATAATCTTAAGAAATTTCTATTAGATCCATTTTGAGTTGGAACATCCATTGATTTGTG
131 TGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTG
40547479 GATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAA
196 GATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAA
* *
40547531 GAAGATGACATTAATAAAAAATCATGGAATTATCACTCAAATCATGTAAATATGCTTCTAATCAT
1 GAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCAT
* * *
40547596 CATAAAAATAAGTTTAGAAATAATAATTACCTTTGATCCGTTTTAAATTCTTTGATTGAAAATCT
66 CATAAAAATAAGTTTAGAAATAATAATTACATTTGATTCGTTCTAAATTCTTTGATTGAAAATCT
* ** *
40547661 TGATTCAAGAATCTTAAGCCGAGTAA-CGCTAA-AGAGT--AATTTGAGGTTGGAAGCATCCATT
131 TGATTCAAGAATCTT-----GAGAAATTTCTAATAGA-TCCATTTTGA-GTTGGAA-CATCCATT
* *
40547722 GATTTGTGGATTTTCTATCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAA
188 GATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAA
* **
40547782 GAAGATGACACTAATTAAAAATCATGCAATTATCACTCAAATCATGTAAATATGAATCTAATCAT
1 GAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCAT
*
40547847 ACAATAAAAATAAGTTTAGAAATAATAATTA-ACTTTGATTCGTTTTAAATTCTTTGATTGAAAA
66 -C-ATAAAAATAAGTTTAGAAATAATAATTACA-TTTGATTCGTTCTAAATTCTTTGATTGAAAA
*
40547911 TCTTGATTCAAGAATCTTGGGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTT
128 TCTTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTT
40547976 GTG
193 GTG
40547979 AANNNNNNNN
Statistics
Matches: 868, Mismatches: 55, Indels: 37
0.90 0.06 0.04
Matches are distributed among these distances:
246 2 0.00
247 583 0.67
248 19 0.02
249 27 0.03
250 20 0.02
251 136 0.16
252 5 0.01
253 76 0.09
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (247 bp):
GAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCAT
CATAAAAATAAGTTTAGAAATAATAATTACATTTGATTCGTTCTAAATTCTTTGATTGAAAATCT
TGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTG
GATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAA
Found at i:40549300 original size:247 final size:247
Alignment explanation
Indices: 40548861--40562774 Score: 9404
Period size: 247 Copynumber: 56.3 Consensus size: 247
40548851 NNNNNNNNTT
* * * * **
40548861 ATTACCTTTAATTTGTTCTAAA-TCTTTTGATTGAAAAGCTTGATTCAAGAATCTTGGGAAATTT
1 ATTACCTTTGATTCGTTTTAAATTC-TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTT
*
40548925 CTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATC
65 CTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATC
* * *
40548990 CACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCACTTATCACT
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACT
*
40549055 CAAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* *
40549108 ATTACCTTTCATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40549173 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * *
40549238 ACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTAATAAAACATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
* *
40549303 AAATCATGTATATATG-TTGCTAATCAGCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTT-CTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * *
40549355 ATTACATTTTATTCGTTCTAAATTCTTTGATTCAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40549420 TAATAGATCCATTTTGAGTTGGAAAATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*
40549485 ACCATTAAAGCACCTTTAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
40549550 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*
40549602 ATTACCTTTGATCCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40549667 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGAT-C
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * *
40549731 ACCATTAAAGCATCTTACGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCT
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-CT
* *
40549795 CAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTCAGAAATAATA
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * * * * *
40549848 ATCACATTTAATTCGTTCTAAATCCTTTGATTCAAAATCTTGATTCAAGAATCTTGAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40549913 TAATAGATCCATTTTTAGTTGGAACATCCATTGATTTGAGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40549978 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATTAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
*
40550043 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAACA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* *
40550095 ATTACCTTTGATTCATTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTACGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40550160 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40550225 ACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
*
40550290 AAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * *
40550342 ATTACCATTGAATCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40550407 TAATAGATCCATTTTGTGTTGAAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*
40550472 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTCTCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
*
40550537 AAATCATGTAAATATGATTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* *
40550589 TTTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCCTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40550654 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * * *
40550719 ACCATTAAAGAACCTTACGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-CT
*
40550783 CAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATA
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * * * *
40550836 ATCACATTTAATTCGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40550901 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40550966 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATTAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
40551031 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * *
40551083 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATATTGATTCAAGAATCTTGATAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*************
40551148 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCNNNNNNNNNNNNNN
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTC-AAAATTCAAGATC
*****************************************************************
40551213 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACT
*****************************************************
40551278 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*****************************************************************
40551331 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*****************************************************************
40551396 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
**********************************************************
40551461 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
* *
40551526 AAATCATGTAAATATGATTCTAATCATCAGAAAAAT-AGTTTAG-AAT-ATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
40551575 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40551640 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGAT-C
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * *
40551704 ACCATTAAAGCATCTTACGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCT
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-CT
* *
40551768 TAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATA
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * * * *
40551821 ATCACATTTAATTCGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40551886 TAATAAATCCATTTTGAGTTGGAACATCCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * *
40551951 AGCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
*
40552016 AAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
**
40552068 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTGGGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40552133 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTGGTGAATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* **
40552198 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTAT---NN
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
****************************************************
40552260 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*****************************************************************
40552312 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
************************* *
40552377 NNNNNNNNNNNNNNNNNNNNNNNNNATCCATTGATTTGTGGATTTCCCCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*
40552442 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCATTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
40552507 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * **
40552559 ATTACCTCTGATCCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTGGGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40552624 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCC-CATCAAAATTCAAGATC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTC-TCAAAATTCAAGATC
* * * *
40552688 CACCGTTGAAGCACCTTAAGATTTTGAAGAAGATGGCACTAATAAAAAATCATGCAATTATCACT
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACT
40552753 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*
40552806 ATTACCTTTGATCCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40552871 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * *
40552936 ACCATTAAAGAACCTTACGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCT
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-CT
*
40553000 CAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATA
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * * * * *
40553053 ATCACATTTAATTCGTTCTAAATCCTTTGATTGAAAATCTTGATTCTAGAATCTTGAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
**
40553118 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCGGTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*
40553183 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATTAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
*
40553248 AAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
******************
40553300 ATTACCTTTGATTCGTTTTAAATTCTTTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 ATTACCTTTGATTCGTTTTAAATTCTTTGAT----------------TGAAAATCTTGATTCAAG
*****************************************************************
40553365 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
50 AATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTC
* * *
40553430 NCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAAT
115 TCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAAT
*
40553495 CATGCAATTATCACTCAAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATA
180 CATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATA
40553560 ATA
245 ATA
*
40553563 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40553628 TAACAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * *
40553693 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGGACACTAAAAAAAAAATCATGCAATTCTCAC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGAT-GACA-TTAATAAAAAATCATGCAATTATCAC
*
40553758 TCAAATCATGTAAATATGATTCTAATCATCATAAAAATAAGTTTAGAAATAATA
194 TCAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * ** *
40553812 ATTACCTTTGATTCGTTTTAAATTCCTTGATTAAAAATCTTGATTCAAGAATCTTGGGAATTTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40553877 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTAGTGAATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40553942 ACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
*
40554007 AAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*
40554059 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* * * * *
40554124 TAATAGATCGATTTTGTGTTGAAACATCCATTGATTTGTGGATTTTCTATCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * *
40554189 ACCATTAAAGCACCTTAACATTTTGAAGAAGATGACACTAATTAAAAATCATGCAAGTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
* *
40554254 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTGTACAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*
40554306 ATTACCATTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*****************************************
40554371 TAATAGATCCATTTTGAGTTGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*****************************************************************
40554436 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
****************************************************
40554501 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*****************************************************************
40554553 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*****************************************************************
40554618 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
***************** * *
40554683 NNNNNNNNNNNNNNNNNAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
* *
40554748 AAATTATGTAAATATGATTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* *
40554800 ATTACCTTTCATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40554865 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGTATTTCCTCTCAAGATTCAAGAT-C
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * * *
40554929 ACCATTAAAGCATCTTACGCTTTTGAAGAATATGGCAGTAATAAAAAATCATGC-ATTCAT-ATC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATT-ATCA-C
*
40554992 TCAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATA
194 TCAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * * * *
40555046 ATCACATTTAATTCGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* * *
40555111 TAATAGATCCGTTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAACATTC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * *
40555176 ACCATTAAAGCATCTTACA-ATTTTGAAGAATATGACAGTAATAAAAAACCATGCAATTAT-ATC
131 ACCATTAAAGCACCTTA-AGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-C
* *
40555239 TCAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATT
194 TCAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * ***********************************
40555293 ATTACCTTTAATTTGTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 ATTACCTTTGATTCGTT-T-----------TAAATTCTTTGATTGAAAATCTTGATTCAAGAATC
******************************************************
40555358 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCTCTCAA
54 TTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAA
* * *
40555423 AATTCAAGATCCAGCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATG
119 AATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATG
*
40555488 CAATTATCACTCAAATTATGTAAATATGCTTCTAATCATCA-ATAAAATAAAGTTTAGAAATAAT
184 CAATTATCACTCAAATCATGTAAATATGCTTCTAATCATCATA-AAAAT-AAGTTTAGAAATAAT
40555552 A
247 A
40555553 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40555618 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*
40555683 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCATTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
40555748 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*
40555800 ATTACCTTTGATCCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40555865 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGAT-C
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * *
40555929 ACCATTAAAGCATCTTACGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCT
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-CT
* *
40555993 TAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATA
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * * * *
40556046 ATCACATTTAATTCGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* * *
40556111 TAATAGATCCGTTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAACATTC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * *
40556176 ACCATTAAAGCATCTTACA-ATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATC
131 ACCATTAAAGCACCTTA-AGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-C
* *
40556239 TCAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATT
194 TCAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * * * **
40556293 ATTACCTTTAATTTGTTCTAAATCCTTTGATTGAAAAGCTTGATTCAAGAATCTTGGGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40556358 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40556423 ACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
*
40556488 AAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* *
40556540 ATTACCTTTGATCCGTTTTAAATTCTTTGAATGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40556605 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTTAAGAT-C
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * *
40556669 ACCATTAAAGCATCTTACGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCT
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-CT
* * *
40556733 CAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTTAGAAGTAATT
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * * **
40556786 ATTACATTTAATTCGTTCTAAATTCTTTGATTGAAAATCTTGATTCAAGAATATTGGGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40556851 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGAATTTCCTCCCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * *
40556916 ACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAAGTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
* *
40556981 AAATTATGTAAATATGCTTCTAATCATCATAAAACTAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*
40557033 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40557098 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGTATTTCCTCTCAAGATTCAAGAT-C
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * * * **********
40557162 ACCATTAAAGCATCTTACGCTTTTGAAGAATATGGCAGTAATAAAAAATCATGCANNNNNNNNNN
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
****************************************************
40557227 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*****************************************************************
40557279 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*****************************************************************
40557344 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*****************************************************************
40557409 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
***********************************************
40557474 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* *
40557526 ATTACCTTTGATCCGTTTTAAATTCTTTGATTGAAAATCTTTATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40557591 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * *
40557656 ACCATTAAACCACGTTATGATATTGAAGAAGATGACATTAATAAAAAATCATGCAATTCTCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
* *
40557721 AAATCATGTAAATATGATTCTAATCATCGTAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* *
40557773 ATTACCTTTGATTC-TTTCT-AATTCCTTCGATTGAAAATCTTGATTCAAGAATCTTACGAAATT
1 ATTACCTTTGATTCGTTT-TAAATT-CTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATT
* * * * *
40557836 TCTAATAGATCCATTTTGAGTTGGAATATCCACTGGTTTATGGATTTCCTCTCCAAATTCAAGAT
64 TCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGAT
*
40557901 CCACCATTAACGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCAC
129 CCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCAC
* *
40557966 TCAAGTCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATCATA
194 TCAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* *
40558020 ATTACCTTTTATCCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* * *
40558085 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAGATTCAAAATTC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*
40558150 ACCATTAAAGCACCTTAAGAATTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
* *
40558215 AAATCATGTAAATATGCTTCTAATCATCGTAAGAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * * *
40558267 ATTACCTTTGATTC-TTTCTAAATCCTTTAACTGAAAATATTGATTCAAGAATCTTGAGAAATTT
1 ATTACCTTTGATTCGTTT-TAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTT
40558331 CTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGAT-
65 CTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATC
* * * * * * *
40558395 CACCATTAAAGCATCTTACGCTTTTGAAGAATATGGCAGTAACAAAAAATCATGCAATTAT-ATC
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-C
* **
40558459 TCAAATCATGTAAATATGCTTCTAATAATCA-AAATAATAAGTTTAGAAATGTTA
194 TCAAATCATGTAAATATGCTTCTAATCATCATAAA-AATAAGTTTAGAAATAATA
* * * * **
40558513 ATTACCTTTAATTCGTTCTAAATCCTTTGACTGAAAATCTTGATTCAAGAATCTTGGGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* * * *
40558578 TAACAGATCCATTTTGAGTTGAAACATCCATTGATTTGTGAATTTCCTCCCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * *
40558643 ACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAAGTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
* *
40558708 AAATTATGTAAATATGCTTCTAATCATCATAAAACTAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* *
40558760 ATTACCTTTCATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40558825 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGTATTTCCTCTCAAGATTCAAGAT-C
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * * * *
40558889 ACCATTAAAGCATCTTACGCTTTTGAAGAATATGGCAGTAATAAAAAATCATGCAATCAT-ATCT
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-CT
*
40558953 CAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATA
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
40559006 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40559071 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTTCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*
40559136 ACCATTAAAGCACCTTACGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
*
40559201 AAATCATGTAAATATGCTTCTAATCATCATAAAAACAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * *
40559253 ATTACCTTTGATCCGTTTTAAATTCCTTGATTGAAAATCTTTATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40559318 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * **************
40559383 ACCATTAAACCACGTTATGATATTGAAGAAGATGACATTAATAAAAAATCNNNNNNNNNNNNNNN
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATC-ATGCAATTATCACT
*****************************************************
40559448 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*****************************************************************
40559501 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*****************************************************************
40559566 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
***********************************************
40559631 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
* *
40559696 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTGTACAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*
40559748 ATTACCATTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40559813 TAATAGATCCATTTTGAGTTGGAACACCCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40559878 ACCACTAATGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
*
40559943 AAATCATGTAAATATGCTTCTAATCATCATAAAAACAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* *
40559995 ATTACCTTTGATCCGTTTTAAATTCTTTGATTGAAAATCTTTATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40560060 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * *
40560125 ACCATTAAACCACGTTATGATATTGAAGAAGATGACATTAATAAAAAATCATGCAATTCTCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
* *
40560190 AAATCATGTAAATATGATTCTAATCATCGTAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * *
40560242 ATTACCTTTGATTC-TTTTTAATTCCTTCGATTGAAAATCTTGATTCAAGAATCTTATGAAATTT
1 ATTACCTTTGATTCGTTTTAAATT-CTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTT
* * * *
40560306 CTAATAGATCCATTTTGAGTTGGAATATCCACTGGTTTGTGGATTTCCTCTCCAAATTCAAGATC
65 CTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATC
*
40560371 CACCATTAACGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACT
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACT
* *
40560436 CAAGTCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATCATA
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*
40560489 ATTACC-TTGATCCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40560553 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40560618 ACCACTAAAGCACCTTAAGATTTTGAAGAAGATTACATTAATAAAAAAATCATGCAATTATCACT
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAAT-AAAAAATCATGCAATTATCACT
*
40560683 CAAATCATGTAAATATGCTTCTAATCATCATAAGAATAAGTTTAGAAATAATA
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * * * *
40560736 ATTACCTTTGATTC-TTTCTAAATCCTTTAACTGAAAATATTGATTCAAGAATCTTGATAAATTT
1 ATTACCTTTGATTCGTTT-TAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTT
40560800 CTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGAT-
65 CTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATC
* * * * * *
40560864 CACCATTAAAGCATCTTACGCTTTTGAAGAATATGGCAGTAATAAAAAATCATGCAATTAT-ATC
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-C
* *
40560928 TCAAATCATGTAAATATGCTTCTAATAATCA-AAATAATAAGTTTAGAAATATTA
194 TCAAATCATGTAAATATGCTTCTAATCATCATAAA-AATAAGTTTAGAAATAATA
* * * * **
40560982 ATTACCTTTAATTCGTTCTAAATCCTTTGACTGAAAATCTTGATTCAAGAATCTTGGGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* * *
40561047 TAATAGATCCATTTTGAGTTGAAACATGCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40561112 ACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
*
40561177 AAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*
40561229 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40561294 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGAT-C
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * * *
40561358 ACCATTAAAGCATCTTACGCTTTTGGAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCT
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-CT
*
40561422 AAAATCATGTAAATATGCTTCTAATCATC-TCAAAAATAAGTTTAGAAATAATA
195 CAAATCATGTAAATATGCTTCTAATCATCAT-AAAAATAAGTTTAGAAATAATA
* * * * *
40561475 ATTACCTTTAATTCGTTCTAAATCCTTTGATTGAAAGTCTTTATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40561540 TAATAGATCCATTTTGTGTTGGAACATCCACT-AGTTTGTGGATTTCCTCTCAAAATTCAAGATC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGA-TTTGTGGATTTCCTCTCAAAATTCAAGATC
* *
40561604 CACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTAATAAAAAATCATGCAATTATCACT
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACT
*
40561669 CAAATCATGTAAATATG-TTGCTAATCAGCATAAAAATAAGTTTAGAAATAATA
195 CAAATCATGTAAATATGCTT-CTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * *
40561722 ATTACATTTTATTCGTTCTAAATTCTTTGATTCAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40561787 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*
40561852 ACCATTAAAGCACATTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
40561917 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* *
40561969 ATTACCTTTTATCCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40562034 TAATAGAACCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40562099 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATGATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
40562164 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
40562216 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40562281 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTCTGGATTTTCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
40562346 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
40562411 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
40562463 ATTACCTTTGATTC-TTTCTAAA-TCGTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATT
1 ATTACCTTTGATTCGTTT-TAAATTC-TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATT
* * *
40562526 TCTAATAGATCCATTTTGAGTTGGAACATCCACTGGTTTGTTGATTTCCTCTCAAAATTCAAGAT
64 TCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGAT
* * * * *
40562591 CCACCATTAAAGCACCTTAAGCTTTAGAATAATATGACATTAATAAAAAATCATGCAATTAGCAC
129 CCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCAC
* * *
40562656 TCAAATCGTGTAAATATGCTGCTAATCAGCATAAAAATAAGTTTAGAAATAATA
194 TCAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
* * * * *
40562710 ATTACATTTTATTTGTTCTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40562775 AGAATATTTT
Statistics
Matches: 10256, Mismatches: 3301, Indels: 220
0.74 0.24 0.02
Matches are distributed among these distances:
242 1 0.00
243 38 0.00
244 103 0.01
245 20 0.00
246 2072 0.20
247 7214 0.70
248 277 0.03
249 228 0.02
258 2 0.00
259 110 0.01
260 31 0.00
263 160 0.02
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.32
Consensus pattern (247 bp):
ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
Found at i:40549399 original size:13 final size:14
Alignment explanation
Indices: 40549381--40549409 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
40549371 TCTAAATTCT
40549381 TTGATTCAA-AATC
1 TTGATTCAAGAATC
40549394 TTGATTCAAGAATC
1 TTGATTCAAGAATC
40549408 TT
1 TT
40549410 AAGAAATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.41
Consensus pattern (14 bp):
TTGATTCAAGAATC
Found at i:40549892 original size:13 final size:14
Alignment explanation
Indices: 40549874--40549904 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
40549864 TCTAAATCCT
40549874 TTGATTCAA-AATC
1 TTGATTCAAGAATC
40549887 TTGATTCAAGAATC
1 TTGATTCAAGAATC
40549901 TTGA
1 TTGA
40549905 GAAATTTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (14 bp):
TTGATTCAAGAATC
Found at i:40550031 original size:740 final size:741
Alignment explanation
Indices: 40548861--40562774 Score: 9422
Period size: 740 Copynumber: 18.8 Consensus size: 741
40548851 NNNNNNNNTT
* * * * **
40548861 ATTACCTTTAATTTGTTCTAAA-TCTTTTGATTGAAAAGCTTGATTCAAGAATCTTGGGAAATTT
1 ATTACCTTTGATTCGTTTTAAATTC-TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTT
*
40548925 CTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATC
65 CTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATC
* *
40548990 CACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCACTTATCACT
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACT
* *
40549055 CAAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTCAT
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGAT
*
40549120 TCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTCTAATAGATCCAT
260 TCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCAT
40549185 TTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCA
325 TTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCA
* * * *
40549250 CCTTAAGCTTTTGAAGAATATGACATTAATAAAACATCATGCAATTATCACTCAAATCATGTATA
390 CCTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAA
* * * *
40549315 TATG-TTGCTAATCAGCATAAAAATAAGTTTAGAAATAATAATTACATTTTATTCGTTCTAAATT
455 TATGCTT-CTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATT
*
40549379 CTTTGATTCAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAA
519 CTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAA
* *
40549444 AATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTTAGATTTT
584 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTT
*
40549509 GAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAAT
649 GAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAAT
40549574 CATCATAAAAATAAGTTTAGAAATAATA
714 CATCATAAAAATAAGTTTAGAAATAATA
*
40549602 ATTACCTTTGATCCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40549667 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGAT-C
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * *
40549731 ACCATTAAAGCATCTTACGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCT
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCA-CT
* * * * *
40549795 CAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTCAGAAATAATAATCACATTTAAT
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGAT
* * * *
40549860 TCGTTCTAAATCCTTTGATTCAAAATCTTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCAT
260 TCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCAT
* *
40549925 TTTTAGTTGGAACATCCATTGATTTGAGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCA
325 TTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCA
* * *
40549990 CCTTAAGATTTTGAAGAAGATGACACTAATTAAAAATCATGCAATTATCACTCAAATCATGTAAA
390 CCTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAA
* *
40550055 TATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAACAATTACCTTTGATTCATTTTAAATTC
455 TATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTC
*
40550120 TTTGATTGAAAATCTTGATTCAAGAATCTTACGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
520 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
*
40550185 ATCCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTG
585 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTG
* *
40550250 AAAAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATTATGTAAATATGCTTCTAATC
650 AAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATC
40550315 ATCATAAAAATAAGTTTAGAAATAATA
715 ATCATAAAAATAAGTTTAGAAATAATA
* * *
40550342 ATTACCATTGAATCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40550407 TAATAGATCCATTTTGTGTTGAAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40550472 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTCTCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTC
* *
40550537 AAATCATGTAAATATGATTCTAATCATCATAAAAATAAGTTTAGAAATAATATTTACCTTTGATT
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
*
40550602 CGTTTTAAATTCTTTGATTGAAAATCCTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
261 CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
* *
40550667 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGATCCACCATTAAAGAAC
326 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
* * *
40550732 CTTACGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCCCAAATCATGTAAA
391 CTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCA-CTCAAATCATGTAAA
* * * * * *
40550796 TATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATAATCACATTTAATTCGTTCTAAATCC
455 TATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTC
*
40550861 TTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
520 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
*
40550926 ATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTG
585 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTG
*
40550991 AAGAAGATGACACTAATTAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATC
650 AAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATC
40551056 ATCATAAAAATAAGTTTAGAAATAATA
715 ATCATAAAAATAAGTTTAGAAATAATA
* * *
40551083 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATATTGATTCAAGAATCTTGATAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*************
40551148 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCNNNNNNNNNNNNNN
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTC-AAAATTCAAGATC
*****************************************************************
40551213 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACT
*****************************************************************
40551278 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGAT
*****************************************************************
40551343 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
260 TCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCAT
*****************************************************************
40551408 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
325 TTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCA
**********************************************
40551473 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCACTCAAATCATGTAAA
390 CCTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAA
* *
40551538 TATGATTCTAATCATCAGAAAAAT-AGTTTAG-AAT-ATAATTACCTTTGATTCGTTTTAAATTC
455 TATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTC
40551600 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
520 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
* * * *
40551665 ATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGAT-CACCATTAAAGCATCTTACGCTTTTG
585 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTG
* * *
40551729 AAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCTTAAATCATGTAAATATGCTTCTAAT
650 AAGAAGATGACACTAATAAAAAATCATGCAATTATCA-CTCAAATCATGTAAATATGCTTCTAAT
*
40551793 CATCACAAAAATAAGTTTAGAAATAATA
714 CATCATAAAAATAAGTTTAGAAATAATA
* * * * * *
40551821 ATCACATTTAATTCGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40551886 TAATAAATCCATTTTGAGTTGGAACATCCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40551951 AGCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTC
*
40552016 AAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
**
40552081 CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTGGGAAATTTCTAATAGATCCATT
261 CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
* *
40552146 TTGAGTTGGAACATCCATTGATTGGTGAATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
326 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
* * ***************
40552211 CTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTAT---NNNNNNNNNNNNNNN
391 CTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAAT
*****************************************************************
40552273 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
456 ATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTCT
****************************************************************
40552338 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
521 TTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACA
*
40552403 TCCATTGATTTGTGGATTTCCCCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGA
586 TCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGA
* *
40552468 AGAAGATGACATTAATAAAAAATCATGCAATTATCATTCAAATCATGTAAATATGCTTCTAATCA
651 AGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCA
40552533 TCATAAAAATAAGTTTAGAAATAATA
716 TCATAAAAATAAGTTTAGAAATAATA
* * **
40552559 ATTACCTCTGATCCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTGGGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40552624 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCC-CATCAAAATTCAAGATC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTC-TCAAAATTCAAGATC
* * *
40552688 CACCGTTGAAGCACCTTAAGATTTTGAAGAAGATGGCACTAATAAAAAATCATGCAATTATCACT
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACT
40552753 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGAT
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGAT
*
40552818 CCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCAT
260 TCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCAT
* *
40552883 TTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGATCCACCATTAAAGAA
325 TTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCA
* *
40552948 CCTTACGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCTCAAATCATGTAA
390 CCTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCA-CTCAAATCATGTAA
* * * * * *
40553012 ATATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATAATCACATTTAATTCGTTCTAAATC
454 ATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATT
* *
40553077 CTTTGATTGAAAATCTTGATTCTAGAATCTTGAGAAATTTCTAATAGATCCATTTTGAGTTGGAA
519 CTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAA
**
40553142 CATCCATTGATTTGTGGATTTCCGGTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTT
584 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTT
* * *
40553207 GAAGAAGATGACATTAATTAAAAATCATGCAATTATCACTCAAATTATGTAAATATGCTTCTAAT
649 GAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAAT
40553272 CATCATAAAAATAAGTTTAGAAATAATA
714 CATCATAAAAATAAGTTTAGAAATAATA
******************
40553300 ATTACCTTTGATTCGTTTTAAATTCTTTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 ATTACCTTTGATTCGTTTTAAATTCTTTGAT----------------TGAAAATCTTGATTCAAG
*****************************************************************
40553365 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
50 AATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTC
* *
40553430 NCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAAT
115 TCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAAT
*
40553495 CATGCAATTATCACTCAAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATA
180 CATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATA
*
40553560 ATAATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAAT
245 ATAATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAAT
*
40553625 TTCTAACAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGA
310 TTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGA
* * * *
40553690 TCCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGGACACTAAAAAAAAAATCATGCAATTCT
375 TCCACCATTAAAGCACCTTAAGATTTTGAAGAATAT-GACAGT-AATAAAAAATCATGCAATTAT
*
40553755 CACTCAAATCATGTAAATATGATTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTT
438 CACTCAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTT
* * ** *
40553820 TGATTCGTTTTAAATTCCTTGATTAAAAATCTTGATTCAAGAATCTTGGGAATTTTCTAATAGAT
503 TGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGAT
* *
40553885 CCATTTTGAGTTGGAACATCCATTGATTAGTGAATTTCCTCTCAAAATTCAAGATCCACCATTAA
568 CCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAA
* *
40553950 AGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATTATG
633 AGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATG
40554015 TAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
698 TAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATA
*
40554059 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* * * * *
40554124 TAATAGATCGATTTTGTGTTGAAACATCCATTGATTTGTGGATTTTCTATCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * *
40554189 ACCATTAAAGCACCTTAACATTTTGAAGAAGATGACACTAATTAAAAATCATGCAAGTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTC
* * *
40554254 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTGTACAAATAATAATTACCATTGATT
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
40554319 CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
261 CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
******************************************************
40554384 TTGAGTTGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
326 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
*****************************************************************
40554449 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
391 CTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAAT
*****************************************************************
40554514 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
456 ATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTCT
*****************************************************************
40554579 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
521 TTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACA
********************************************************
40554644 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTTTGA
586 TCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGA
* * *
40554709 AAAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATTATGTAAATATGATTCTAATCA
651 AGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCA
40554774 TCATAAAAATAAGTTTAGAAATAATA
716 TCATAAAAATAAGTTTAGAAATAATA
* *
40554800 ATTACCTTTCATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40554865 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGTATTTCCTCTCAAGATTCAAGAT-C
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * * *
40554929 ACCATTAAAGCATCTTACGCTTTTGAAGAATATGGCAGTAATAAAAAATCATGC-ATTCAT-ATC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATT-ATCA-C
* * * *
40554992 TCAAATCATGTAAATATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATAATCACATTTAA
194 TCAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGA
* * * *
40555057 TTCGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCG
259 TTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCA
* *
40555122 TTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAACATTCACCATTAAAGC
324 TTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGC
* *
40555187 ATCTTACA-ATTTTGAAGAATATGACAGTAATAAAAAACCATGCAATTAT-ATCTCAAATCATGT
389 ACCTTA-AGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCA-CTCAAATCATGT
* * * *
40555250 AAATATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATTATTACCTTTAATTTGTTCTNNN
452 AAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTT-T---
*********************************************************
40555315 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
513 --------TAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCC
******************************** *
40555380 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCTCTCAAAATTCAAGATCCAGCATTAAAG
570 ATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* *
40555445 CACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATTATGTA
635 CACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTA
40555510 AATATGCTTCTAATCATCA-ATAAAATAAAGTTTAGAAATAATA
700 AATATGCTTCTAATCATCATA-AAAAT-AAGTTTAGAAATAATA
40555553 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40555618 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40555683 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCATTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTC
*
40555748 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATC
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
40555813 CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
261 CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
* *
40555878 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGAT-CACCATTAAAGCAT
326 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
* * *
40555942 CTTACGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCTTAAATCATGTAAA
391 CTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCA-CTCAAATCATGTAAA
* * * * * *
40556006 TATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATAATCACATTTAATTCGTTCTAAATCC
455 TATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTC
* *
40556071 TTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCGTTTTGAGTTGGAAC
520 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
* * *
40556136 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAACATTCACCATTAAAGCATCTTACA-ATTTT
585 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGATTTT
* *
40556200 GAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCTCAAATCATGTAAATATGCTTCTAA
649 GAAGAAGATGACACTAATAAAAAATCATGCAATTATCA-CTCAAATCATGTAAATATGCTTCTAA
* *
40556264 TCATCACAAAAATAAGTTTAGAAATAATT
713 TCATCATAAAAATAAGTTTAGAAATAATA
* * * * * **
40556293 ATTACCTTTAATTTGTTCTAAATCCTTTGATTGAAAAGCTTGATTCAAGAATCTTGGGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
*
40556358 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*
40556423 ACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTC
* *
40556488 AAATTATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATC
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
*
40556553 CGTTTTAAATTCTTTGAATGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
261 CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
* *
40556618 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTTAAGAT-CACCATTAAAGCAT
326 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
* *
40556682 CTTACGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCTCAAATCATGTAAA
391 CTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCA-CTCAAATCATGTAAA
* * * * * *
40556746 TATGCTTCTAATCATCACAAAAATAAGTTTAGAAGTAATTATTACATTTAATTCGTTCTAAATTC
455 TATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTC
* **
40556811 TTTGATTGAAAATCTTGATTCAAGAATATTGGGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
520 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
* *
40556876 ATCCATTGATTTGTGAATTTCCTCCCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTG
585 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTG
* * *
40556941 AAAAAGATGACACTAATAAAAAATCATGCAAGTATCACTCAAATTATGTAAATATGCTTCTAATC
650 AAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATC
*
40557006 ATCATAAAACTAAGTTTAGAAATAATA
715 ATCATAAAAATAAGTTTAGAAATAATA
*
40557033 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40557098 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGTATTTCCTCTCAAGATTCAAGAT-C
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * * * **********
40557162 ACCATTAAAGCATCTTACGCTTTTGAAGAATATGGCAGTAATAAAAAATCATGCANNNNNNNNNN
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTC
*****************************************************************
40557227 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
*****************************************************************
40557292 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
261 CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
*****************************************************************
40557357 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
326 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
*****************************************************************
40557422 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
391 CTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAAT
********************************** *
40557487 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATAATTACCTTTGATCCGTTTTAAATTCT
456 ATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTCT
*
40557552 TTGATTGAAAATCTTTATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACA
521 TTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACA
* * * *
40557617 TCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAACCACGTTATGATATTGA
586 TCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGA
* * *
40557682 AGAAGATGACATTAATAAAAAATCATGCAATTCTCACTCAAATCATGTAAATATGATTCTAATCA
651 AGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCA
*
40557747 TCGTAAAAATAAGTTTAGAAATAATA
716 TCATAAAAATAAGTTTAGAAATAATA
* *
40557773 ATTACCTTTGATTC-TTTCT-AATTCCTTCGATTGAAAATCTTGATTCAAGAATCTTACGAAATT
1 ATTACCTTTGATTCGTTT-TAAATT-CTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATT
* * * * *
40557836 TCTAATAGATCCATTTTGAGTTGGAATATCCACTGGTTTATGGATTTCCTCTCCAAATTCAAGAT
64 TCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGAT
* *
40557901 CCACCATTAACGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCAC
129 CCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCAC
* * *
40557966 TCAAGTCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATCATAATTACCTTTTA
194 TCAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGA
*
40558031 TCCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCA
259 TTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCA
* * *
40558096 TTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAGATTCAAAATTCACCATTAAAGC
324 TTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGC
* * *
40558161 ACCTTAAGAATTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCAAATCATGTAA
389 ACCTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAA
* *
40558226 ATATGCTTCTAATCATCGTAAGAATAAGTTTAGAAATAATAATTACCTTTGATTC-TTTCTAAAT
454 ATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTT-TAAAT
* * * * *
40558290 CCTTTAACTGAAAATATTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATTTTGAGTTGGA
518 TCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGA
* * *
40558355 ACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGAT-CACCATTAAAGCATCTTACGCTTT
583 ACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTT
* * * *
40558419 TGAAGAATATGGCAGTAACAAAAAATCATGCAATTAT-ATCTCAAATCATGTAAATATGCTTCTA
648 TGAAGAAGATGACACTAATAAAAAATCATGCAATTATCA-CTCAAATCATGTAAATATGCTTCTA
* **
40558483 ATAATCA-AAATAATAAGTTTAGAAATGTTA
712 ATCATCATAAA-AATAAGTTTAGAAATAATA
* * * * **
40558513 ATTACCTTTAATTCGTTCTAAATCCTTTGACTGAAAATCTTGATTCAAGAATCTTGGGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* * * *
40558578 TAACAGATCCATTTTGAGTTGAAACATCCATTGATTTGTGAATTTCCTCCCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* *
40558643 ACCATTAAAGCACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAAGTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTC
* * *
40558708 AAATTATGTAAATATGCTTCTAATCATCATAAAACTAAGTTTAGAAATAATAATTACCTTTCATT
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
*
40558773 CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTCTAATAGATCCATT
261 CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
* * *
40558838 TTGAGTTGGAACATCCATTGATTTGTGTATTTCCTCTCAAGATTCAAGAT-CACCATTAAAGCAT
326 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
* * * *
40558902 CTTACGCTTTTGAAGAATATGGCAGTAATAAAAAATCATGCAATCAT-ATCTCAAATCATGTAAA
391 CTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCA-CTCAAATCATGTAAA
*
40558966 TATGCTTCTAATCATCACAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTC
455 TATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTC
40559031 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
520 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
* *
40559096 ATCCATTGATTTGTGGATTTTCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTACGATTTTG
585 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTG
*
40559161 AAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATC
650 AAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATC
*
40559226 ATCATAAAAACAAGTTTAGAAATAATA
715 ATCATAAAAATAAGTTTAGAAATAATA
* * *
40559253 ATTACCTTTGATCCGTTTTAAATTCCTTGATTGAAAATCTTTATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40559318 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * * **************
40559383 ACCATTAAACCACGTTATGATATTGAAGAAGATGACATTAATAAAAAATCNNNNNNNNNNNNNNN
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATC-ATGCAATTATCACT
*****************************************************************
40559448 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
195 CAAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGAT
*****************************************************************
40559513 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
260 TCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCAT
*****************************************************************
40559578 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
325 TTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCA
***********************************
40559643 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATGCAATTATCACTCAAATCATGTAAA
390 CCTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAA
* * *
40559708 TATGCTTCTAATCATCATAAAAATAAGTGTACAAATAATAATTACCATTGATTCGTTTTAAATTC
455 TATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTC
40559773 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
520 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
* * * *
40559838 ACCCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCCACCACTAATGCACCTTAAGATTTTG
585 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTG
*
40559903 AAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATC
650 AAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATC
*
40559968 ATCATAAAAACAAGTTTAGAAATAATA
715 ATCATAAAAATAAGTTTAGAAATAATA
* *
40559995 ATTACCTTTGATCCGTTTTAAATTCTTTGATTGAAAATCTTTATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40560060 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
* * * * * *
40560125 ACCATTAAACCACGTTATGATATTGAAGAAGATGACATTAATAAAAAATCATGCAATTCTCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTC
* *
40560190 AAATCATGTAAATATGATTCTAATCATCGTAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
* * *
40560255 C-TTTTTAATTCCTTCGATTGAAAATCTTGATTCAAGAATCTTATGAAATTTCTAATAGATCCAT
261 CGTTTTAAATT-CTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCAT
* * * * *
40560319 TTTGAGTTGGAATATCCACTGGTTTGTGGATTTCCTCTCCAAATTCAAGATCCACCATTAACGCA
325 TTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCA
* * *
40560384 CCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCAAGTCATGTAAA
390 CCTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAA
* *
40560449 TATGCTTCTAATCATCATAAAAATAAGTTTAGAAATCATAATTACC-TTGATCCGTTTTAAATTC
455 TATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTC
40560513 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
520 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAAC
*
40560578 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCACTAAAGCACCTTAAGATTTTG
585 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTG
* *
40560643 AAGAAGATTACATTAATAAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAAT
650 AAGAAGATGACACTAAT-AAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAAT
*
40560708 CATCATAAGAATAAGTTTAGAAATAATA
714 CATCATAAAAATAAGTTTAGAAATAATA
* * * * * *
40560736 ATTACCTTTGATTC-TTTCTAAATCCTTTAACTGAAAATATTGATTCAAGAATCTTGATAAATTT
1 ATTACCTTTGATTCGTTT-TAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTT
40560800 CTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGAT-
65 CTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATC
* * * * * *
40560864 CACCATTAAAGCATCTTACGCTTTTGAAGAATATGGCAGTAATAAAAAATCATGCAATTAT-ATC
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCA-C
* * *
40560928 TCAAATCATGTAAATATGCTTCTAATAATCA-AAATAATAAGTTTAGAAATATTAATTACCTTTA
194 TCAAATCATGTAAATATGCTTCTAATCATCATAAA-AATAAGTTTAGAAATAATAATTACCTTTG
* * * **
40560992 ATTCGTTCTAAATCCTTTGACTGAAAATCTTGATTCAAGAATCTTGGGAAATTTCTAATAGATCC
258 ATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCC
* * *
40561057 ATTTTGAGTTGAAACATGCATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
323 ATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* * * *
40561122 CACCTTAAGATTTTGAAAAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATTATGTA
388 CACCTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTA
40561187 AATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAAT
453 AATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAAT
*
40561252 TCTTTGATTGAAAATCTTGATTCAATAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGA
518 TCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGA
* * *
40561317 ACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGAT-CACCATTAAAGCATCTTACGCTTT
583 ACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTT
* * * *
40561381 TGGAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCTAAAATCATGTAAATATGCTTCTA
648 TGAAGAAGATGACACTAATAAAAAATCATGCAATTATCA-CTCAAATCATGTAAATATGCTTCTA
40561445 ATCATC-TCAAAAATAAGTTTAGAAATAATA
712 ATCATCAT-AAAAATAAGTTTAGAAATAATA
* * * * *
40561475 ATTACCTTTAATTCGTTCTAAATCCTTTGATTGAAAGTCTTTATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40561540 TAATAGATCCATTTTGTGTTGGAACATCCACT-AGTTTGTGGATTTCCTCTCAAAATTCAAGATC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGA-TTTGTGGATTTCCTCTCAAAATTCAAGATC
* * *
40561604 CACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTAATAAAAAATCATGCAATTATCACT
130 CACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACT
* * *
40561669 CAAATCATGTAAATATG-TTGCTAATCAGCATAAAAATAAGTTTAGAAATAATAATTACATTTTA
195 CAAATCATGTAAATATGCTT-CTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGA
* *
40561733 TTCGTTCTAAATTCTTTGATTCAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCA
259 TTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCA
40561798 TTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGC
324 TTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGC
* * *
40561863 ACATTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCAAATCATGTAA
389 ACCTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAA
* *
40561928 ATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTTATCCGTTTTAAATT
454 ATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATT
*
40561993 CTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGAACCATTTTGAGTTGGAA
519 CTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAA
40562058 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTT
584 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTT
*
40562123 GAAGAAGATGACACTAATAAAAAATGATGCAATTATCACTCAAATCATGTAAATATGCTTCTAAT
649 GAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAAT
40562188 CATCATAAAAATAAGTTTAGAAATAATA
714 CATCATAAAAATAAGTTTAGAAATAATA
40562216 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
1 ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
* *
40562281 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTCTGGATTTTCTCTCAAAATTCAAGATCC
66 TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
*
40562346 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC
131 ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTC
40562411 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
196 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
40562476 C-TTTCTAAA-TCGTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCA
261 CGTTT-TAAATTC-TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCA
* * *
40562539 TTTTGAGTTGGAACATCCACTGGTTTGTTGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGC
324 TTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGC
* * * * * *
40562604 ACCTTAAGCTTTAGAATAATATGACATTAATAAAAAATCATGCAATTAGCACTCAAATCGTGTAA
389 ACCTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAA
* * * * * *
40562669 ATATGCTGCTAATCAGCATAAAAATAAGTTTAGAAATAATAATTACATTTTATTTGTTCTAAATT
454 ATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATT
*
40562734 CTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTC
519 CTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
40562775 AGAATATTTT
Statistics
Matches: 9640, Mismatches: 3428, Indels: 210
0.73 0.26 0.02
Matches are distributed among these distances:
737 40 0.00
738 735 0.08
739 601 0.06
740 3736 0.39
741 2500 0.26
742 531 0.06
743 213 0.02
751 1 0.00
752 170 0.02
753 266 0.03
754 222 0.02
755 4 0.00
757 282 0.03
758 5 0.00
759 333 0.03
760 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.32
Consensus pattern (741 bp):
ATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTC
TAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC
ACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTC
AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
CGTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATT
TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
CTTAAGATTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAAT
ATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTCT
TTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACA
TCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGA
AGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCA
TCATAAAAATAAGTTTAGAAATAATA
Found at i:40561766 original size:13 final size:14
Alignment explanation
Indices: 40561748--40561776 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
40561738 TCTAAATTCT
40561748 TTGATTCAA-AATC
1 TTGATTCAAGAATC
40561761 TTGATTCAAGAATC
1 TTGATTCAAGAATC
40561775 TT
1 TT
40561777 AAGAAATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.41
Consensus pattern (14 bp):
TTGATTCAAGAATC
Found at i:40567086 original size:17 final size:18
Alignment explanation
Indices: 40567055--40567091 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
40567045 TTTACTTCCT
40567055 ATTGGTTTTAATTAGTTA
1 ATTGGTTTTAATTAGTTA
*
40567073 ATTGG-TTTATTTAGTTA
1 ATTGGTTTTAATTAGTTA
40567090 AT
1 AT
40567092 GTGAGAGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (18 bp):
ATTGGTTTTAATTAGTTA
Found at i:40567250 original size:41 final size:41
Alignment explanation
Indices: 40567205--40567287 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
40567195 AATTAAATGT
*
40567205 TAAATTAGTAAAAAGCAAAAAAGAAAGTGTCATCTCTTTCA
1 TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
40567246 TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
1 TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
40567287 T
1 T
40567288 TTTAATTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.27
Consensus pattern (41 bp):
TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
Found at i:40572827 original size:17 final size:17
Alignment explanation
Indices: 40572801--40572838 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
40572791 AATATATTGT
*
40572801 ATATTTAACACAAATAA
1 ATATTCAACACAAATAA
*
40572818 ATATTCAACACAAATAG
1 ATATTCAACACAAATAA
40572835 ATAT
1 ATAT
40572839 CAAATTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.55, C:0.13, G:0.03, T:0.29
Consensus pattern (17 bp):
ATATTCAACACAAATAA
Found at i:40573255 original size:48 final size:48
Alignment explanation
Indices: 40573184--40573278 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
40573174 TACATTGCTT
40573184 AAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAGC
1 AAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAGC
* * * *
40573232 AAAAACGGCTAAGTCGGCCTAACTTGCAATGATAAAGGATTTAACAG
1 AAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAG
40573279 AATTTCCTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (48 bp):
AAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAGC
Found at i:40573524 original size:19 final size:19
Alignment explanation
Indices: 40573500--40573553 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 19
40573490 AAAGCTGTAT
40573500 ACAATTAGAACTCTAAGAC
1 ACAATTAGAACTCTAAGAC
*
40573519 ACAATTAGAAC-CT--GTAT
1 ACAATTAGAACTCTAAG-AC
40573536 ACAATTAGAACTCTAAGA
1 ACAATTAGAACTCTAAGA
40573554 TTACATAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 12 0.40
18 4 0.13
19 12 0.40
20 1 0.03
ACGTcount: A:0.46, C:0.19, G:0.11, T:0.24
Consensus pattern (19 bp):
ACAATTAGAACTCTAAGAC
Found at i:40573534 original size:36 final size:36
Alignment explanation
Indices: 40573483--40573553 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
40573473 ATCAAAGGCT
*
40573483 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ACAATTAAAACCTGTATACAATTAGAACTCTAAGAC
*
40573519 ACAATTAGAACCTGTATACAATTAGAACTCTAAGA
1 ACAATTAAAACCTGTATACAATTAGAACTCTAAGA
40573554 TTACATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.25
Consensus pattern (36 bp):
ACAATTAAAACCTGTATACAATTAGAACTCTAAGAC
Found at i:40573541 original size:17 final size:17
Alignment explanation
Indices: 40573482--40573546 Score: 69
Period size: 17 Copynumber: 3.7 Consensus size: 17
40573472 CATCAAAGGC
* *
40573482 TACAATTAAAAGCTGTA
1 TACAATTAGAACCTGTA
40573499 TACAATTAGAACTCTAAG-A
1 TACAATTAGAAC-CT--GTA
*
40573518 CACAATTAGAACCTGTA
1 TACAATTAGAACCTGTA
40573535 TACAATTAGAAC
1 TACAATTAGAAC
40573547 TCTAAGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
16 1 0.03
17 22 0.55
18 4 0.10
19 12 0.30
20 1 0.03
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (17 bp):
TACAATTAGAACCTGTA
Found at i:40573826 original size:24 final size:24
Alignment explanation
Indices: 40573799--40573845 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
40573789 TACTCATACA
*
40573799 TTGCTTTGTTCCATCATCTCAACT
1 TTGCCTTGTTCCATCATCTCAACT
* *
40573823 TTGCCTTGTTCTATCATTTCAAC
1 TTGCCTTGTTCCATCATCTCAAC
40573846 CATTTCAACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.28, G:0.09, T:0.47
Consensus pattern (24 bp):
TTGCCTTGTTCCATCATCTCAACT
Found at i:40574930 original size:126 final size:125
Alignment explanation
Indices: 40574699--40574981 Score: 399
Period size: 126 Copynumber: 2.3 Consensus size: 125
40574689 TTATTTCGAG
* * * *
40574699 TTGACATTTCTG-GTCAAATAGTATAAAATCACTTATACTAGGATGCTATCAGAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTATAAAATCGCTGATACCAGGATGCTATCAGAGAAGAAATTGT
* *
40574763 GAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTTTTTT
65 GAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
40574824 TTGACGTTTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTAT-ATGAGAAGAAATTG
1 TTGACG-TTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTATCA-GAGAAGAAATTG
* * * *
40574888 TGAAATTGCGCCCTCGTGGACGTGGTTTCGCTACAGTTGGTCATGTAGGAAATAATTATTTT
64 TGAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
* * * *
40574950 TTGATGTTTCTAAGCAAATAGTGTCAAATCGC
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGC
40574982 GCCCTCGTGG
Statistics
Matches: 141, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
125 29 0.21
126 111 0.79
127 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (125 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTATCAGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
Found at i:40576203 original size:29 final size:29
Alignment explanation
Indices: 40576136--40576251 Score: 173
Period size: 29 Copynumber: 4.1 Consensus size: 29
40576126 CGTTAAATCA
40576136 AATTAAATTAAATTAGGGTTA-GGTTTTT
1 AATTAAATTAAATTAGGGTTAGGGTTTTT
40576164 AATTAAATTAAATTAGGGTTAGGGTTTTT
1 AATTAAATTAAATTAGGGTTAGGGTTTTT
*
40576193 AATTAATTTAAATTAGGGTTAGGGTTTTT
1 AATTAAATTAAATTAGGGTTAGGGTTTTT
* ** *
40576222 AATTTAATTAGGTTAGGGTT-GAGTTTTT
1 AATTAAATTAAATTAGGGTTAGGGTTTTT
40576250 AA
1 AA
40576252 ACAAATTATA
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
28 30 0.37
29 51 0.63
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (29 bp):
AATTAAATTAAATTAGGGTTAGGGTTTTT
Found at i:40576569 original size:24 final size:24
Alignment explanation
Indices: 40576537--40576592 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
40576527 TGTATGTGGA
* *
40576537 GGTGTTTGCATCGTGAACGGCGAT
1 GGTGTTTGCATCATGAACGGCGAC
40576561 GGTGTTTGCATCATGAACGGCGAC
1 GGTGTTTGCATCATGAACGGCGAC
*
40576585 GGAGTTTG
1 GGTGTTTG
40576593 AAAGCCATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.18, C:0.16, G:0.38, T:0.29
Consensus pattern (24 bp):
GGTGTTTGCATCATGAACGGCGAC
Found at i:40578435 original size:14 final size:15
Alignment explanation
Indices: 40578418--40578451 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
40578408 AATAATTATC
40578418 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
40578432 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
40578447 TAAAA
1 TAAAA
40578452 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:40578582 original size:28 final size:29
Alignment explanation
Indices: 40578550--40578606 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
40578540 TGAAAATATT
40578550 AAAAATATTAAAA-TTATTTAAAAAAATAA
1 AAAAAT-TTAAAATTTATTTAAAAAAATAA
*
40578579 AAAAATTTAAAATTTTCTTTAAAAAAAT
1 AAAAATTTAAAA-TTTATTTAAAAAAAT
40578607 GAAATTGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 6 0.24
29 6 0.24
30 13 0.52
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (29 bp):
AAAAATTTAAAATTTATTTAAAAAAATAA
Found at i:40578678 original size:21 final size:22
Alignment explanation
Indices: 40578643--40578690 Score: 80
Period size: 21 Copynumber: 2.2 Consensus size: 22
40578633 TATGGATTTA
*
40578643 AGAGATTTTTTGAAGGAAATTG
1 AGAGATTTTTGGAAGGAAATTG
40578665 AGAGA-TTTTGGAAGGAAATTG
1 AGAGATTTTTGGAAGGAAATTG
40578686 AGAGA
1 AGAGA
40578691 ATATTTGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.40, C:0.00, G:0.31, T:0.29
Consensus pattern (22 bp):
AGAGATTTTTGGAAGGAAATTG
Found at i:40588300 original size:17 final size:17
Alignment explanation
Indices: 40588278--40588409 Score: 62
Period size: 17 Copynumber: 7.8 Consensus size: 17
40588268 AGAGCTCGCA
*
40588278 GGTGAGCTCTCA-TGCTT
1 GGTGAGCTCGCAGTG-TT
40588295 GGTGAGCTCGCAGTGTT
1 GGTGAGCTCGCAGTGTT
40588312 GGTGAGCT---A-T-TCT
1 GGTGAGCTCGCAGTGT-T
**
40588325 GGTGAGCTCGCAGTTCGCA
1 GGTGAGCTCGCAG-T-GTT
* *
40588344 GGTGAGCTCACAGTCTT
1 GGTGAGCTCGCAGTGTT
* * *
40588361 GGTGAGCTTGCATCTTTT
1 GGTGAGCTCGCA-GTGTT
* * *
40588379 AGTGAGCTTGCACAT-TT
1 GGTGAGCTCGCA-GTGTT
40588396 GGTGAGCTCGCAGT
1 GGTGAGCTCGCAGT
40588410 TCATAGTTAG
Statistics
Matches: 88, Mismatches: 17, Indels: 21
0.70 0.13 0.17
Matches are distributed among these distances:
12 1 0.01
13 10 0.11
14 1 0.01
16 2 0.02
17 43 0.49
18 19 0.22
19 12 0.14
ACGTcount: A:0.15, C:0.20, G:0.33, T:0.32
Consensus pattern (17 bp):
GGTGAGCTCGCAGTGTT
Found at i:40588460 original size:18 final size:18
Alignment explanation
Indices: 40588437--40588507 Score: 81
Period size: 22 Copynumber: 3.8 Consensus size: 18
40588427 GCTCGTACTC
40588437 TTGGTGAGCTCGCATCTT
1 TTGGTGAGCTCGCATCTT
40588455 TTGGTGAGCGAGCTCGCATCTT
1 TTGGT----GAGCTCGCATCTT
*
40588477 TTGGTGAGCTCGCA-CAT
1 TTGGTGAGCTCGCATCTT
*
40588494 TTGGTGAGATCGCA
1 TTGGTGAGCTCGCA
40588508 GTTCACAGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
17 15 0.32
18 14 0.30
22 18 0.38
ACGTcount: A:0.15, C:0.21, G:0.31, T:0.32
Consensus pattern (18 bp):
TTGGTGAGCTCGCATCTT
Found at i:40588470 original size:22 final size:22
Alignment explanation
Indices: 40588442--40588485 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
40588432 TACTCTTGGT
40588442 GAGCTCGCATCTTTTGGTGAGC
1 GAGCTCGCATCTTTTGGTGAGC
40588464 GAGCTCGCATCTTTTGGTGAGC
1 GAGCTCGCATCTTTTGGTGAGC
40588486 TCGCACATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.23, G:0.32, T:0.32
Consensus pattern (22 bp):
GAGCTCGCATCTTTTGGTGAGC
Found at i:40590831 original size:43 final size:42
Alignment explanation
Indices: 40590777--40590906 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
40590767 GAGCTCGCAC
*
40590777 GCAGTTCGCAGGTGAGCTTGCACATTTGGTGAGCTCGTAGTCT
1 GCAGTTAGCAGGTGAGCTTGCACATTTGGTGAGCTCG-AGTCT
*
40590820 GCAGTTAGCAGGTGAGCTTGCAC-TCTTGGTGAGCTCGCG-CT
1 GCAGTTAGCAGGTGAGCTTGCACAT-TTGGTGAGCTCGAGTCT
40590861 -C--TT----GGTGAGCTTGCACATTTGGTGAGCTCGCAGT-T
1 GCAGTTAGCAGGTGAGCTTGCACATTTGGTGAGCTCG-AGTCT
40590896 CGCAGTTAGCA
1 -GCAGTTAGCA
40590907 TAGATGGTCA
Statistics
Matches: 72, Mismatches: 3, Indels: 24
0.73 0.03 0.24
Matches are distributed among these distances:
34 25 0.35
35 3 0.04
37 1 0.01
38 2 0.03
39 2 0.03
40 1 0.01
41 2 0.03
42 2 0.03
43 34 0.47
ACGTcount: A:0.16, C:0.22, G:0.32, T:0.29
Consensus pattern (42 bp):
GCAGTTAGCAGGTGAGCTTGCACATTTGGTGAGCTCGAGTCT
Found at i:40590852 original size:17 final size:17
Alignment explanation
Indices: 40590830--40590888 Score: 84
Period size: 17 Copynumber: 3.5 Consensus size: 17
40590820 GCAGTTAGCA
40590830 GGTGAGCTTGCACTCTT
1 GGTGAGCTTGCACTCTT
* *
40590847 GGTGAGCTCGCGCTCTT
1 GGTGAGCTTGCACTCTT
40590864 GGTGAGCTTGCACAT-TT
1 GGTGAGCTTGCAC-TCTT
40590881 GGTGAGCT
1 GGTGAGCT
40590889 CGCAGTTCGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
17 36 0.97
18 1 0.03
ACGTcount: A:0.12, C:0.22, G:0.34, T:0.32
Consensus pattern (17 bp):
GGTGAGCTTGCACTCTT
Found at i:40591488 original size:27 final size:27
Alignment explanation
Indices: 40591434--40591488 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
40591424 ATTTTAATAA
*
40591434 TTTTTAATTTAAAAAAAAGTTATAAAT
1 TTTTTAATTTAAAAAAAAGTAATAAAT
* *
40591461 TTTTTGAATTTTAAAAAAA-TAATTAAT
1 TTTTT-AATTTAAAAAAAAGTAATAAAT
40591488 T
1 T
40591489 GCTAACGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (27 bp):
TTTTTAATTTAAAAAAAAGTAATAAAT
Found at i:40600083 original size:40 final size:40
Alignment explanation
Indices: 40600039--40600209 Score: 168
Period size: 40 Copynumber: 4.3 Consensus size: 40
40600029 GTTTGAATAA
* * * *
40600039 AAAAATGCCGCTGTAGATTGTGCATTAGCAGCGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCAGAGCTTTTTG
* * *
40600079 AAAAACGCCGCTATAGATCAAGCATTAGCGGAGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCAGAGCTTTTTG
*
40600119 AAAAATGCCGCTATAGATCGAGCATTAGC-G-GCATTTTTC
1 AAAAATGCCGCTATAGATCGAGCATTAGCAGAGC-TTTTTG
** * * *
40600158 AAAAGGCGCCGCTATAGGTCGAGCATTAGCGGCGCTTCTTT-
1 AAAA-ATGCCGCTATAGATCGAGCATTAGCAGAGCTT-TTTG
*
40600199 AAAAACGCCGC
1 AAAAATGCCGC
40600210 AAAAAAATTA
Statistics
Matches: 112, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 10 0.09
40 88 0.79
41 7 0.06
42 5 0.04
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (40 bp):
AAAAATGCCGCTATAGATCGAGCATTAGCAGAGCTTTTTG
Found at i:40600136 original size:80 final size:80
Alignment explanation
Indices: 40600039--40600209 Score: 213
Period size: 80 Copynumber: 2.1 Consensus size: 80
40600029 GTTTGAATAA
* * * *
40600039 AAAAATGCCGCTGTAGATTGTGCATTAGCAGCGC-TTTTTGAAAA-ACGCCGCTATAGATCAAGC
1 AAAAATGCCGCTATAGATCGAGCATTAGC-G-GCATTTTTCAAAAGACGCCGCTATAGATCAAGC
40600102 ATTAGCGGAGCTT-TTT
64 ATTAGCGGAGCTTCTTT
* * *
40600118 GAAAAATGCCGCTATAGATCGAGCATTAGCGGCATTTTTCAAAAGGCGCCGCTATAGGTCGAGCA
1 -AAAAATGCCGCTATAGATCGAGCATTAGCGGCATTTTTCAAAAGACGCCGCTATAGATCAAGCA
*
40600183 TTAGCGGCGCTTCTTT
65 TTAGCGGAGCTTCTTT
*
40600199 AAAAACGCCGC
1 AAAAATGCCGC
40600210 AAAAAAATTA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
78 2 0.03
79 10 0.13
80 64 0.81
81 3 0.04
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (80 bp):
AAAAATGCCGCTATAGATCGAGCATTAGCGGCATTTTTCAAAAGACGCCGCTATAGATCAAGCAT
TAGCGGAGCTTCTTT
Found at i:40600439 original size:141 final size:139
Alignment explanation
Indices: 40600192--40600464 Score: 406
Period size: 141 Copynumber: 1.9 Consensus size: 139
40600182 ATTAGCGGCG
40600192 CTTCTTTAAAAACGCCGCAAAAAAATTAAGCACAACGCCAATTTATGTTGAGCTTTGGTGGCATT
1 CTTCTTTAAAAACGCCGCAAAAAAATTAAGCACAACGCCAATTTATGTTGAGCTTTGGTGGCATT
* * * *
40600257 AGTGGCGCTTCTTAGAAAACGCTGCTATAAATCAAGTATTAGTGGCACTTTTTGAAAA-CGCCGC
66 AGCGGCGCTTCTTAGAAAACGCTACTATAAATCAAGCATTAGCGGCACTTTTTGAAAATCGCCGC
40600321 TAAGCGGTA
131 TAAGCGGTA
* *
40600330 CTTCTTTAAAAATGCCGCAAAAAAATTAAGCACAACGCCATCGTTCTATGTTGAGCTTTGGTGGC
1 CTTCTTTAAAAACGCCGCAAAAAAATTAAGCACAACGCCA--ATT-TATGTTGAGCTTTGGTGGC
* * **
40600395 ATTAGCGGCGCTTTTTAGAAAACG-TCACTATAGATCAAGCATTAGCGGTGCTTTTTGAAAATCG
63 ATTAGCGGCGCTTCTTAGAAAACGCT-ACTATAAATCAAGCATTAGCGGCACTTTTTGAAAATCG
40600459 CCGCTA
127 CCGCTA
40600465 TAGGTCGAGC
Statistics
Matches: 120, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
138 39 0.32
140 3 0.03
141 70 0.58
142 8 0.07
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (139 bp):
CTTCTTTAAAAACGCCGCAAAAAAATTAAGCACAACGCCAATTTATGTTGAGCTTTGGTGGCATT
AGCGGCGCTTCTTAGAAAACGCTACTATAAATCAAGCATTAGCGGCACTTTTTGAAAATCGCCGC
TAAGCGGTA
Found at i:40600448 original size:40 final size:40
Alignment explanation
Indices: 40600393--40600496 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 40
40600383 AGCTTTGGTG
* *
40600393 GCATTAGCGGCGCTTTTTAGAAAA-CGTCACTATAGATCAA
1 GCATTAGCGGTGCTTTTT-GAAAATCGCCACTATAGATCAA
* * *
40600433 GCATTAGCGGTGCTTTTTGAAAATCGCCGCTATAGGTCGA
1 GCATTAGCGGTGCTTTTTGAAAATCGCCACTATAGATCAA
40600473 GCATTAGCGGTGCTTTTTTGAAAA
1 GCATTAGCGGTGC-TTTTTGAAAA
40600497 ACACCGCAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
39 5 0.09
40 42 0.74
41 10 0.18
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (40 bp):
GCATTAGCGGTGCTTTTTGAAAATCGCCACTATAGATCAA
Found at i:40600815 original size:7 final size:7
Alignment explanation
Indices: 40600800--40600952 Score: 78
Period size: 7 Copynumber: 21.6 Consensus size: 7
40600790 ATCATTATAA
40600800 TTTAGGG
1 TTTAGGG
*
40600807 TTTATGG
1 TTTAGGG
40600814 TTTAGGG
1 TTTAGGG
* *
40600821 ATTATGTG
1 TTTA-GGG
40600829 TTTAGGG
1 TTTAGGG
* *
40600836 ATTATGGA
1 TTTA-GGG
*
40600844 TTAAGGG
1 TTTAGGG
*
40600851 -TTGGGG
1 TTTAGGG
*
40600857 GTTAGGG
1 TTTAGGG
*
40600864 GTTAGGG
1 TTTAGGG
*
40600871 GTTAGGG
1 TTTAGGG
*
40600878 TTTAGAAG
1 TTTAG-GG
40600886 -TTAGGG
1 TTTAGGG
*
40600892 GTTAGGGG
1 TTTA-GGG
*
40600900 TTAAGGG
1 TTTAGGG
40600907 -TTAGGGG
1 TTTA-GGG
40600914 TTTAGGG
1 TTTAGGG
* *
40600921 GTTAAGG
1 TTTAGGG
* *
40600928 TTTATGT
1 TTTAGGG
*
40600935 TTTATGG
1 TTTAGGG
40600942 TTTAGGG
1 TTTAGGG
40600949 TTTA
1 TTTA
40600953 AGAGATAGGG
Statistics
Matches: 111, Mismatches: 27, Indels: 16
0.72 0.18 0.10
Matches are distributed among these distances:
6 7 0.06
7 86 0.77
8 18 0.16
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.40
Consensus pattern (7 bp):
TTTAGGG
Found at i:40600850 original size:15 final size:14
Alignment explanation
Indices: 40600800--40600842 Score: 68
Period size: 15 Copynumber: 3.0 Consensus size: 14
40600790 ATCATTATAA
*
40600800 TTTAGGGTTTATGG
1 TTTAGGGATTATGG
40600814 TTTAGGGATTATGTG
1 TTTAGGGATTATG-G
40600829 TTTAGGGATTATGG
1 TTTAGGGATTATGG
40600843 ATTAAGGGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 13 0.48
15 14 0.52
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.47
Consensus pattern (14 bp):
TTTAGGGATTATGG
Found at i:40600872 original size:21 final size:21
Alignment explanation
Indices: 40600848--40600924 Score: 100
Period size: 21 Copynumber: 3.6 Consensus size: 21
40600838 TATGGATTAA
*
40600848 GGGTTGGGGGTTAGGGGTTAG
1 GGGTTAGGGGTTAGGGGTTAG
* **
40600869 GGGTTAGGGTTTAGAAGTTAG
1 GGGTTAGGGGTTAGGGGTTAG
*
40600890 GGGTTAGGGGTTAAGGGTTAG
1 GGGTTAGGGGTTAGGGGTTAG
40600911 GGGTTTAGGGGTTA
1 GGG-TTAGGGGTTA
40600925 AGGTTTATGT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
21 37 0.79
22 10 0.21
ACGTcount: A:0.17, C:0.00, G:0.52, T:0.31
Consensus pattern (21 bp):
GGGTTAGGGGTTAGGGGTTAG
Found at i:40603195 original size:31 final size:31
Alignment explanation
Indices: 40603160--40603223 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
40603150 TATTGGGTCT
40603160 AATTATATGTGTTTTTTGGACTTTTAACCCA
1 AATTATATGTGTTTTTTGGACTTTTAACCCA
40603191 AATTATATGTGTTTTTTGGACTTTTAACCCA
1 AATTATATGTGTTTTTTGGACTTTTAACCCA
40603222 AA
1 AA
40603224 ACTTTATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (31 bp):
AATTATATGTGTTTTTTGGACTTTTAACCCA
Found at i:40606323 original size:32 final size:32
Alignment explanation
Indices: 40606287--40606456 Score: 138
Period size: 32 Copynumber: 5.5 Consensus size: 32
40606277 AGTTTTGCTG
* *
40606287 CAAAGGCTGTCCTTTACATCCAGTAATTGCCA
1 CAAAGGCTTTCCTTTACATCCAGTACTTGCCA
** *
40606319 CAAAGGCTTT-CTTGT-C-TAGAGT-TTTGCCA
1 CAAAGGCTTTCCTT-TACATCCAGTACTTGCCA
* * *
40606348 CAAAGGCTTTCTTTTGCATCCAGTACTTGACA
1 CAAAGGCTTTCCTTTACATCCAGTACTTGCCA
* * * **
40606380 TAAAGACTTTCCTTTACATCCAATACTCACCA
1 CAAAGGCTTTCCTTTACATCCAGTACTTGCCA
* *
40606412 CAAAGGCTTTCCTTTCCA--GAGT-CTTGCCA
1 CAAAGGCTTTCCTTTACATCCAGTACTTGCCA
*
40606441 CAAAGGCTATCCTTTA
1 CAAAGGCTTTCCTTTA
40606457 ATTGGTGTTT
Statistics
Matches: 107, Mismatches: 26, Indels: 13
0.73 0.18 0.09
Matches are distributed among these distances:
29 36 0.34
30 9 0.08
31 8 0.07
32 54 0.50
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.32
Consensus pattern (32 bp):
CAAAGGCTTTCCTTTACATCCAGTACTTGCCA
Found at i:40606326 original size:61 final size:61
Alignment explanation
Indices: 40606256--40606390 Score: 164
Period size: 61 Copynumber: 2.2 Consensus size: 61
40606246 ACAGAGGTTG
**
40606256 CACAAAGGCTTATCTT-TCCAGAGTTTTGCTGCAAAGGCTGTCCTTTACATCCAGTAATTGC
1 CACAAAGGCTT-TCTTGTCCAGAGTTTTGCCACAAAGGCTGTCCTTTACATCCAGTAATTGC
* * * * * *
40606317 CACAAAGGCTTTCTTGTCTAGAGTTTTGCCACAAAGGCTTTCTTTTGCATCCAGTACTTGA
1 CACAAAGGCTTTCTTGTCCAGAGTTTTGCCACAAAGGCTGTCCTTTACATCCAGTAATTGC
* *
40606378 CATAAAGACTTTC
1 CACAAAGGCTTTC
40606391 CTTTACATCC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 4 0.06
61 59 0.94
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (61 bp):
CACAAAGGCTTTCTTGTCCAGAGTTTTGCCACAAAGGCTGTCCTTTACATCCAGTAATTGC
Found at i:40627042 original size:45 final size:44
Alignment explanation
Indices: 40626977--40627076 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 44
40626967 ACAGATAATG
** * * * *
40626977 CCATAGTTGAAAGACCCTATGGCACTATATCGGAACTGAATAAGA
1 CCATAGTTGAAAGAAACTATGG-ACCATACCAGAAATGAATAAGA
*
40627022 CCATAGTTGAAAGAAACTATGGACCATACCAGAAATGAGTAAGA
1 CCATAGTTGAAAGAAACTATGGACCATACCAGAAATGAATAAGA
*
40627066 CCATAGCTGAA
1 CCATAGTTGAA
40627077 TGACGTTATG
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 27 0.57
45 20 0.43
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (44 bp):
CCATAGTTGAAAGAAACTATGGACCATACCAGAAATGAATAAGA
Found at i:40627182 original size:45 final size:45
Alignment explanation
Indices: 40627055--40627182 Score: 159
Period size: 45 Copynumber: 2.8 Consensus size: 45
40627045 CCATACCAGA
* *
40627055 AATGAGTAAGACCATAGCTGAATGACGTTATGGA-ATCACGATTTT
1 AATGAGTAAGACCATAGCTGAAAGACGTTAT-GACATCACGATTCT
* * * *
40627100 AACGAGTAAGACCATAACTGAAAGACGTTATGTCATCAGGATTCT
1 AATGAGTAAGACCATAGCTGAAAGACGTTATGACATCACGATTCT
* * *
40627145 AATGAGTAAGACCATAGTTGAAAGATGCTATGACATCA
1 AATGAGTAAGACCATAGCTGAAAGACGTTATGACATCA
40627183 TGAATCAGAT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
44 1 0.01
45 69 0.99
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (45 bp):
AATGAGTAAGACCATAGCTGAAAGACGTTATGACATCACGATTCT
Found at i:40631810 original size:21 final size:20
Alignment explanation
Indices: 40631772--40631810 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
40631762 TTGAATTTTT
*
40631772 TTTCAAACATTCTCAAAGCA
1 TTTCAAACATTCTAAAAGCA
*
40631792 TTTCAAAGACTTCTAAAAG
1 TTTCAAACA-TTCTAAAAG
40631811 TACTCAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (20 bp):
TTTCAAACATTCTAAAAGCA
Found at i:40633478 original size:55 final size:56
Alignment explanation
Indices: 40633379--40633572 Score: 232
Period size: 55 Copynumber: 3.5 Consensus size: 56
40633369 TAATGCCAGA
* * * *
40633379 GGTCTTAACCACATGGTTTTACATACATTCTTTCAGTCATTTCATATATTGTAATG
1 GGTCTTAACCACATGGTTTTACATTCATTCATTCAGTCATTTCATATCTTGTCATG
* * *
40633435 GGTCTTAACCACATGTTTTTA-ATTCATTCATTCAGTCATTTCATAGCTCGTCATG
1 GGTCTTAACCACATGGTTTTACATTCATTCATTCAGTCATTTCATATCTTGTCATG
* ** * *
40633490 GGTCTTAA-CATATGGCCTTACA-TCATTCATTTAGTCATTTCATATCTTGCCATG
1 GGTCTTAACCACATGGTTTTACATTCATTCATTCAGTCATTTCATATCTTGTCATG
* * *
40633544 GGTTTTAACCACATGGTCTTACATACATT
1 GGTCTTAACCACATGGTTTTACATTCATT
40633573 TATGTATCAT
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
54 43 0.37
55 49 0.42
56 24 0.21
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (56 bp):
GGTCTTAACCACATGGTTTTACATTCATTCATTCAGTCATTTCATATCTTGTCATG
Found at i:40640780 original size:27 final size:26
Alignment explanation
Indices: 40640735--40640987 Score: 235
Period size: 27 Copynumber: 9.4 Consensus size: 26
40640725 GGTATAACAA
*
40640735 TCATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCT-TCGGGGTATTTCAG
*
40640762 TCATTTTACCCTTCAGGGGAATTTC-G
1 TCATTTTACCCTTC-GGGGTATTTCAG
**
40640788 ATCATTTTACCCTTCGGGGGTATTTTGG
1 -TCATTTTACCCTTC-GGGGTATTTCAG
* *
40640816 TCATTTTACCCTTCGAAGGCATTTCAG
1 TCATTTTACCCTTCG-GGGTATTTCAG
* *
40640843 TTATTTTACCCTTTGGGGGTATTTC-G
1 TCATTTTACCC-TTCGGGGTATTTCAG
40640869 ATCATTTTACCCTTCGAGGGTATTTCAG
1 -TCATTTTACCCTTCG-GGGTATTTCAG
* **
40640897 TTATTTTACCCTTCGAGGGTATTTTGG
1 TCATTTTACCCTTCG-GGGTATTTCAG
* *
40640924 TCATTTTTACCCTTCAAGGGTA-TTCGG
1 TCA-TTTTACCCTTC-GGGGTATTTCAG
*
40640951 TCATTTTACCCTTCGAGGGTGTTTCAG
1 TCATTTTACCCTTCG-GGGTATTTCAG
*
40640978 TTA-TTTACCC
1 TCATTTTACCC
40640988 ATGAATCGCA
Statistics
Matches: 189, Mismatches: 25, Indels: 25
0.79 0.10 0.10
Matches are distributed among these distances:
26 29 0.15
27 139 0.74
28 21 0.11
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.42
Consensus pattern (26 bp):
TCATTTTACCCTTCGGGGTATTTCAG
Found at i:40640849 original size:81 final size:81
Alignment explanation
Indices: 40640755--40640987 Score: 299
Period size: 81 Copynumber: 2.9 Consensus size: 81
40640745 CTATGGGGGT
* * **
40640755 ATTTCAGTCATTTTACCCTTCAGGGGAATTTCGATCATTTTACCCTTCGGGGGTATTTTGGTCAT
1 ATTTCAGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCAT
40640820 TTTACCCTTCGAAGGC
66 TTTACCCTTCGAAGGC
* ** *
40640836 ATTTCAGTTATTTTACCCTTTGGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTTAT
1 ATTTCAGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCAT
* *
40640901 TTTACCCTTCGAGGGT
66 TTTACCCTTCGAAGGC
** * * * *
40640917 ATTTTGGTCATTTTTACCCTTCAAGGGTA-TTCGGTCATTTTACCCTTCGAGGGTGTTTCAGTTA
1 ATTTCAGTCA-TTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCA
40640981 -TTTACCC
65 TTTTACCC
40640988 ATGAATCGCA
Statistics
Matches: 133, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 7 0.05
81 111 0.83
82 15 0.11
ACGTcount: A:0.18, C:0.21, G:0.19, T:0.42
Consensus pattern (81 bp):
ATTTCAGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCAT
TTTACCCTTCGAAGGC
Found at i:40641593 original size:15 final size:16
Alignment explanation
Indices: 40641570--40641602 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
40641560 GCACTAGAAT
40641570 GAAGAGGAGAAGAAGA
1 GAAGAGGAGAAGAAGA
*
40641586 GAAG-GGAGGAGAAGA
1 GAAGAGGAGAAGAAGA
40641601 GA
1 GA
40641603 TGAGAAGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (16 bp):
GAAGAGGAGAAGAAGA
Found at i:40641599 original size:10 final size:10
Alignment explanation
Indices: 40641572--40641615 Score: 56
Period size: 10 Copynumber: 4.6 Consensus size: 10
40641562 ACTAGAATGA
40641572 AGAGGAGAAG
1 AGAGGAGAAG
40641582 A-A-GAGAAG
1 AGAGGAGAAG
*
40641590 GGAGGAGAAG
1 AGAGGAGAAG
*
40641600 AGATGAGAAG
1 AGAGGAGAAG
40641610 AGAGGA
1 AGAGGA
40641616 TTCGGCAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
8 6 0.21
9 2 0.07
10 20 0.71
ACGTcount: A:0.50, C:0.00, G:0.48, T:0.02
Consensus pattern (10 bp):
AGAGGAGAAG
Found at i:40644969 original size:25 final size:25
Alignment explanation
Indices: 40644902--40644971 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
40644892 ACCTACCGCT
* *
40644902 CCTTCAAAGTTCGCCACACACTGTC
1 CCTTCAGAGTTCACCACACACTGTC
* *
40644927 CCTTTAGAGTTCGCCACACACTGTC
1 CCTTCAGAGTTCACCACACACTGTC
*
40644952 CCTTCAGAGTTCATCACACA
1 CCTTCAGAGTTCACCACACA
40644972 TTCTAACCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.24, C:0.37, G:0.13, T:0.26
Consensus pattern (25 bp):
CCTTCAGAGTTCACCACACACTGTC
Found at i:40644971 original size:27 final size:25
Alignment explanation
Indices: 40644902--40644963 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
40644892 ACCTACCGCT
*
40644902 CCTTCAAAGTTCGCCACACACTGTC
1 CCTTCAGAGTTCGCCACACACTGTC
*
40644927 CCTTTAGAGTTCGCCACACACTGTC
1 CCTTCAGAGTTCGCCACACACTGTC
40644952 CCTTCAGAGTTC
1 CCTTCAGAGTTC
40644964 ATCACACATT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.21, C:0.37, G:0.15, T:0.27
Consensus pattern (25 bp):
CCTTCAGAGTTCGCCACACACTGTC
Found at i:40645146 original size:28 final size:28
Alignment explanation
Indices: 40645105--40645160 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
40645095 TTCATCATTT
40645105 GCCACAAAAGCTTTCCTTTCCTTAGATC
1 GCCACAAAAGCTTTCCTTTCCTTAGATC
40645133 GCCA-AAAAGGCTTTCCTTTCCTTAGATC
1 GCCACAAAA-GCTTTCCTTTCCTTAGATC
40645161 ACTATAAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 4 0.15
28 23 0.85
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.32
Consensus pattern (28 bp):
GCCACAAAAGCTTTCCTTTCCTTAGATC
Found at i:40645169 original size:28 final size:28
Alignment explanation
Indices: 40645110--40645173 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
40645100 CATTTGCCAC
*
40645110 AAAA-GCTTTCCTTTCCTTAGATCGCCA
1 AAAAGGCTTTCCTTTCCTTAGATCACCA
*
40645137 AAAAGGCTTTCCTTTCCTTAGATCACTA
1 AAAAGGCTTTCCTTTCCTTAGATCACCA
*
40645165 TAAAGGCTT
1 AAAAGGCTT
40645174 CGATTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 4 0.12
28 29 0.88
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.34
Consensus pattern (28 bp):
AAAAGGCTTTCCTTTCCTTAGATCACCA
Found at i:40654693 original size:24 final size:24
Alignment explanation
Indices: 40654666--40654711 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
40654656 ACTGATTCTC
*
40654666 AGCTCGT-ATGAGCTTATCGATTGT
1 AGCTCGTGA-GAGCTTACCGATTGT
40654690 AGCTCGTGAGAGCTTACCGATT
1 AGCTCGTGAGAGCTTACCGATT
40654712 CTCAACTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.33
Consensus pattern (24 bp):
AGCTCGTGAGAGCTTACCGATTGT
Found at i:40654736 original size:49 final size:49
Alignment explanation
Indices: 40654654--40654762 Score: 130
Period size: 49 Copynumber: 2.2 Consensus size: 49
40654644 TCATTAGGGA
* * * *
40654654 TTACTGATTCTCAGCTCGTATGAGCTTATCGATTGT-AGCTCGTGAGAGC
1 TTACTGATTCTCAACTCATATGAGCATACCGATT-TAAGCTCGTGAGAGC
* *
40654703 TTACCGATTCTCAACTCATATGAGCATACCGATTTACAGCTCTTGAGAGC
1 TTACTGATTCTCAACTCATATGAGCATACCGATTTA-AGCTCGTGAGAGC
*
40654753 ATACTGATTC
1 TTACTGATTC
40654763 ATAGCTTGTC
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
48 1 0.02
49 29 0.58
50 20 0.40
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (49 bp):
TTACTGATTCTCAACTCATATGAGCATACCGATTTAAGCTCGTGAGAGC
Found at i:40654752 original size:25 final size:25
Alignment explanation
Indices: 40654659--40654762 Score: 72
Period size: 25 Copynumber: 4.2 Consensus size: 25
40654649 AGGGATTACT
* * *
40654659 GATTCTCAGCTCGT-ATGAGCTTATC
1 GATTCTCAGCTCATGA-GAGCATACC
* * *
40654684 GATTGT-AGCTCGTGAGAGCTTACC
1 GATTCTCAGCTCATGAGAGCATACC
*
40654708 GATTCTCAACTCAT-ATGAGCATACC
1 GATTCTCAGCTCATGA-GAGCATACC
* *
40654733 GATT-TACAGCTCTTGAGAGCATACT
1 GATTCT-CAGCTCATGAGAGCATACC
40654758 GATTC
1 GATTC
40654763 ATAGCTTGTC
Statistics
Matches: 64, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
24 22 0.34
25 41 0.64
26 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (25 bp):
GATTCTCAGCTCATGAGAGCATACC
Found at i:40661020 original size:24 final size:25
Alignment explanation
Indices: 40660980--40661049 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
40660970 TACCGATTCT
* *
40660980 CAGCTCAT-ATGAACTTACC-AATTG
1 CAGCTCATGA-GAGCTTACCGAATTA
*
40661004 CAGCTCATGAGAGCTTACCGATTTA
1 CAGCTCATGAGAGCTTACCGAATTA
*
40661029 CAGCTCTTGAGAG-TATACCGA
1 CAGCTCATGAGAGCT-TACCGA
40661050 TTCATAACTC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
24 17 0.44
25 22 0.56
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (25 bp):
CAGCTCATGAGAGCTTACCGAATTA
Found at i:40661039 original size:25 final size:25
Alignment explanation
Indices: 40661004--40661051 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
40660994 TTACCAATTG
40661004 CAGCTCATGAGAGCT-TACCGATTTA
1 CAGCTCATGAGAG-TATACCGATTTA
*
40661029 CAGCTCTTGAGAGTATACCGATT
1 CAGCTCATGAGAGTATACCGATT
40661052 CATAACTCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
CAGCTCATGAGAGTATACCGATTTA
Found at i:40661259 original size:30 final size:30
Alignment explanation
Indices: 40661220--40661281 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
40661210 TACATGAAAT
40661220 ACATAGAAAT-GAT-ATTACATGATATATTGAA
1 ACATAGAAATGGATGA-TACATG-TATA-TGAA
40661251 ACAT-GAAATGGATGATACATGTATATGAA
1 ACATAGAAATGGATGATACATGTATATGAA
40661280 AC
1 AC
40661282 TTGCTTAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 6 0.21
30 9 0.31
31 13 0.45
32 1 0.03
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.29
Consensus pattern (30 bp):
ACATAGAAATGGATGATACATGTATATGAA
Found at i:40664672 original size:32 final size:31
Alignment explanation
Indices: 40664617--40664676 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 31
40664607 CATGCTCAAC
* *
40664617 CTTTACTTTTCAGACTTTTAGCAAACTTTGCT
1 CTTTACTTTTCAGAATTTGAGC-AACTTTGCT
* *
40664649 CTTTATTTTTGAGAATTTGAGCAACTTT
1 CTTTACTTTTCAGAATTTGAGCAACTTT
40664677 TCTTTGCTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 6 0.25
32 18 0.75
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.48
Consensus pattern (31 bp):
CTTTACTTTTCAGAATTTGAGCAACTTTGCT
Found at i:40668786 original size:26 final size:28
Alignment explanation
Indices: 40668743--40668795 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
40668733 AAATTACAAA
40668743 AAGGAAAAAAGAGCCAAAGAAAAGAAAG
1 AAGGAAAAAAGAGCCAAAGAAAAGAAAG
* *
40668771 AAGGAAAATAG-G-CAAAGAGAAGAAA
1 AAGGAAAAAAGAGCCAAAGAAAAGAAA
40668796 AGAAATATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 12 0.52
27 1 0.04
28 10 0.43
ACGTcount: A:0.66, C:0.06, G:0.26, T:0.02
Consensus pattern (28 bp):
AAGGAAAAAAGAGCCAAAGAAAAGAAAG
Found at i:40670797 original size:11 final size:12
Alignment explanation
Indices: 40670781--40670813 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
40670771 TTTTTCCAAC
40670781 TTATTTTTCT-T
1 TTATTTTTCTCT
40670792 TTATTTTTCTCT
1 TTATTTTTCTCT
40670804 TT-TTTTTCTC
1 TTATTTTTCTC
40670814 CTCGAGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 18 0.86
12 3 0.14
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (12 bp):
TTATTTTTCTCT
Found at i:40670855 original size:2 final size:2
Alignment explanation
Indices: 40670850--40670876 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
40670840 ATCTTTTTTC
40670850 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
40670877 TACAAGCTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:40671089 original size:17 final size:17
Alignment explanation
Indices: 40671067--40671104 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
40671057 TCATGTCTGG
40671067 TTCATCAAGAAAATGGA
1 TTCATCAAGAAAATGGA
*
40671084 TTCATCATGAAAATGGA
1 TTCATCAAGAAAATGGA
40671101 TTCA
1 TTCA
40671105 AACTTCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (17 bp):
TTCATCAAGAAAATGGA
Found at i:40677614 original size:22 final size:19
Alignment explanation
Indices: 40677587--40677636 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 19
40677577 TGAAGTGCAA
40677587 TCTTCATCTTTCCTCAATTG
1 TCTTCATCTTTCCTC-ATTG
40677607 CTCTTTCATACTTTCCTCATTG
1 -TC-TTCAT-CTTTCCTCATTG
40677629 TCTTCATC
1 TCTTCATC
40677637 CACCTCGTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 1 0.04
20 5 0.19
21 4 0.15
22 9 0.33
23 8 0.30
ACGTcount: A:0.14, C:0.32, G:0.04, T:0.50
Consensus pattern (19 bp):
TCTTCATCTTTCCTCATTG
Found at i:40701943 original size:21 final size:21
Alignment explanation
Indices: 40701917--40701959 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
40701907 AAAAAAAGTG
40701917 ATATTTATACCTAGGTTTACT
1 ATATTTATACCTAGGTTTACT
40701938 ATATTTATACCTAGGTTTACT
1 ATATTTATACCTAGGTTTACT
40701959 A
1 A
40701960 GGTAGGGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.14, G:0.09, T:0.47
Consensus pattern (21 bp):
ATATTTATACCTAGGTTTACT
Found at i:40707082 original size:11 final size:12
Alignment explanation
Indices: 40707054--40707086 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
40707044 TCCATGTAAA
*
40707054 TATTGTACATTG
1 TATTGTAAATTG
40707066 TATTGTAAATT-
1 TATTGTAAATTG
40707077 TATTGTAAAT
1 TATTGTAAAT
40707087 AGGTAGTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (12 bp):
TATTGTAAATTG
Found at i:40707630 original size:38 final size:38
Alignment explanation
Indices: 40707574--40707646 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
40707564 GGTGGGGGAA
* *
40707574 TGTTGGAGTGATTTTAGGAGGAAAATATGATATTGGAG
1 TGTTGGAGTGACTTTAGGAGGAAAATATGAGATTGGAG
*
40707612 TGTTTGAGTGACTTTAGGAGGAAAATATGAGATTG
1 TGTTGGAGTGACTTTAGGAGGAAAATATGAGATTG
40707647 TGGAGTTATC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.32, C:0.01, G:0.33, T:0.34
Consensus pattern (38 bp):
TGTTGGAGTGACTTTAGGAGGAAAATATGAGATTGGAG
Found at i:40714976 original size:38 final size:38
Alignment explanation
Indices: 40714925--40715001 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
40714915 GCGTGGTGGG
* ** *
40714925 GGAGTGTTGGAGTGATTTTAGGAGGAAAATATGATATT
1 GGAGTGTTGGAGTGACTTTAAAAGGAAAATATGAGATT
40714963 GGAGTGTTGGAGTGACTTTAAAAGGAAAATATGAGATT
1 GGAGTGTTGGAGTGACTTTAAAAGGAAAATATGAGATT
40715001 G
1 G
40715002 TAGAGTTATC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.34, C:0.01, G:0.34, T:0.31
Consensus pattern (38 bp):
GGAGTGTTGGAGTGACTTTAAAAGGAAAATATGAGATT
Found at i:40715793 original size:25 final size:23
Alignment explanation
Indices: 40715765--40715831 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
40715755 GCCCCACACG
*
40715765 ATTAACCACACGAGCGTGTGGGAAT
1 ATTAACC-CA-GAGCGTGTGAGAAT
**
40715790 ATTAGGCCAGAGCGTGTGAGAAT
1 ATTAACCCAGAGCGTGTGAGAAT
** *
40715813 ATTAGGCCAGACCGTGTGA
1 ATTAACCCAGAGCGTGTGA
40715832 ACCACACGGC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
23 31 0.82
24 2 0.05
25 5 0.13
ACGTcount: A:0.30, C:0.18, G:0.31, T:0.21
Consensus pattern (23 bp):
ATTAACCCAGAGCGTGTGAGAAT
Found at i:40715802 original size:23 final size:23
Alignment explanation
Indices: 40715776--40715831 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
40715766 TTAACCACAC
*
40715776 GAGCGTGTGGGAATATTAGGCCA
1 GAGCGTGTGAGAATATTAGGCCA
40715799 GAGCGTGTGAGAATATTAGGCCA
1 GAGCGTGTGAGAATATTAGGCCA
*
40715822 GACCGTGTGA
1 GAGCGTGTGA
40715832 ACCACACGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.27, C:0.14, G:0.38, T:0.21
Consensus pattern (23 bp):
GAGCGTGTGAGAATATTAGGCCA
Found at i:40718144 original size:46 final size:47
Alignment explanation
Indices: 40718086--40718192 Score: 146
Period size: 46 Copynumber: 2.3 Consensus size: 47
40718076 CAGTTAAACT
* **
40718086 GCCAG-ATCAGATATATGTGGTCAAGCCACTAT-ATTGTTGTCAAGCA
1 GCCAGAAT-AGATATATGCGGTCAAGCCACTATAATTGCAGTCAAGCA
* *
40718132 GCCAGAATAGATATATGCGGTCTAGCCACTATAATTGCAGTCAAGCC
1 GCCAGAATAGATATATGCGGTCAAGCCACTATAATTGCAGTCAAGCA
40718179 GCCAGAATAGATAT
1 GCCAGAATAGATAT
40718193 GTGGTTAAAC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
46 27 0.50
47 27 0.50
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (47 bp):
GCCAGAATAGATATATGCGGTCAAGCCACTATAATTGCAGTCAAGCA
Found at i:40720569 original size:20 final size:20
Alignment explanation
Indices: 40720535--40720576 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
40720525 AACTATTTAA
** *
40720535 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
40720555 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
40720575 AT
1 AT
40720577 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:40723912 original size:22 final size:22
Alignment explanation
Indices: 40723879--40723938 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 22
40723869 AAACAAAATT
40723879 AAGAAAAA-GAAATAGAAAAAGA
1 AAGAAAAATGAAA-AGAAAAAGA
* * *
40723901 AA-AAAAGTGAAACGAAACAGA
1 AAGAAAAATGAAAAGAAAAAGA
40723922 AAGAAAAATG-AAAGAAA
1 AAGAAAAATGAAAAGAAA
40723939 GAAGGAGAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
21 19 0.61
22 12 0.39
ACGTcount: A:0.73, C:0.03, G:0.18, T:0.05
Consensus pattern (22 bp):
AAGAAAAATGAAAAGAAAAAGA
Found at i:40723934 original size:11 final size:10
Alignment explanation
Indices: 40723879--40723938 Score: 50
Period size: 11 Copynumber: 5.6 Consensus size: 10
40723869 AAACAAAATT
40723879 AAGAAAAAGAA
1 AAGAAAAAG-A
40723890 ATAGAAAAAGA
1 A-AGAAAAAGA
*
40723901 AA-AAAAGTGA
1 AAGAAAA-AGA
*
40723911 AACGAAACAGA
1 AA-GAAAAAGA
40723922 AAGAAAAATGA
1 AAGAAAAA-GA
40723933 AAGAAA
1 AAGAAA
40723939 GAAGGAGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
9 4 0.10
10 10 0.25
11 15 0.38
12 11 0.28
ACGTcount: A:0.73, C:0.03, G:0.18, T:0.05
Consensus pattern (10 bp):
AAGAAAAAGA
Found at i:40724317 original size:20 final size:20
Alignment explanation
Indices: 40724281--40724318 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
40724271 GTGAAATTTG
*
40724281 TGTGAAAATATAGAATTAAT
1 TGTGAAAATATAAAATTAAT
40724301 TGTGAAGAA-ATAAAATTA
1 TGTGAA-AATATAAAATTA
40724319 GTCTCGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.32
Consensus pattern (20 bp):
TGTGAAAATATAAAATTAAT
Found at i:40724881 original size:40 final size:40
Alignment explanation
Indices: 40724816--40724944 Score: 122
Period size: 40 Copynumber: 3.3 Consensus size: 40
40724806 GACTTCGAGT
* * *
40724816 CGATGAGACATTGGGTGTCAATTTACTACTTCGGATTAATT
1 CGATGAGACACTAGGTGTCAATTTACTACTTCGGATT-ATC
* * * *
40724857 CGATGAGGCACT-GGTGCCAATTTACT--TT-GGTTTAGC
1 CGATGAGACACTAGGTGTCAATTTACTACTTCGGATTATC
* * *
40724893 CGATGAGACATTAGGTGTCAATTTATTACTTCGAATTATC
1 CGATGAGACACTAGGTGTCAATTTACTACTTCGGATTATC
*
40724933 CGATGAGGCACT
1 CGATGAGACACT
40724945 GAGTTCCAAA
Statistics
Matches: 69, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
36 11 0.16
37 16 0.23
38 2 0.03
39 2 0.03
40 28 0.41
41 10 0.14
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (40 bp):
CGATGAGACACTAGGTGTCAATTTACTACTTCGGATTATC
Found at i:40726022 original size:27 final size:27
Alignment explanation
Indices: 40725987--40726165 Score: 247
Period size: 27 Copynumber: 6.7 Consensus size: 27
40725977 GACCAAAATA
* *
40725987 CCCTATAGGATAAAATGACCGTAATGC
1 CCCTGTAGGGTAAAATGACCGTAATGC
*
40726014 CCCTGTAGGGTAAAATAACCGTAATGC
1 CCCTGTAGGGTAAAATGACCGTAATGC
*
40726041 CCCTGTAGGGTAAAATAACCGTAATGC
1 CCCTGTAGGGTAAAATGACCGTAATGC
*
40726068 CCCTGTAGGGTAAAATGACTGTAATGC
1 CCCTGTAGGGTAAAATGACCGTAATGC
* * * *
40726095 TCTTGTAGGGTAAAATGATCGTAATAC
1 CCCTGTAGGGTAAAATGACCGTAATGC
40726122 CCCTGTAGGGTAAAATGACCGTAATG-
1 CCCTGTAGGGTAAAATGACCGTAATGC
40726148 CCCTGGT-GGGT-AAATGAC
1 CCCT-GTAGGGTAAAATGAC
40726166 TATTTTTACC
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
25 7 0.05
26 8 0.06
27 122 0.89
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.25
Consensus pattern (27 bp):
CCCTGTAGGGTAAAATGACCGTAATGC
Found at i:40726441 original size:32 final size:32
Alignment explanation
Indices: 40726394--40726528 Score: 126
Period size: 32 Copynumber: 4.2 Consensus size: 32
40726384 CTGCAAAACC
* *
40726394 ACTGATGGCTTTGTGCCAATCATATTACCGTT
1 ACTGATGGCTGTGTGCCGATCATATTACCGTT
* ** ***
40726426 ACCGATGGCTGTGTGCCGATCATAACACTACT
1 ACTGATGGCTGTGTGCCGATCATATTACCGTT
* * * *
40726458 ACTAATGGCTTTGTACCGATCATGTTACCGTT
1 ACTGATGGCTGTGTGCCGATCATATTACCGTT
* * * *
40726490 ACTGATGGCTGTATGCCGATCATATCACTGCT
1 ACTGATGGCTGTGTGCCGATCATATTACCGTT
40726522 ACTGATG
1 ACTGATG
40726529 AATTTGTACC
Statistics
Matches: 77, Mismatches: 26, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
32 77 1.00
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.33
Consensus pattern (32 bp):
ACTGATGGCTGTGTGCCGATCATATTACCGTT
Found at i:40726499 original size:64 final size:64
Alignment explanation
Indices: 40726398--40726549 Score: 205
Period size: 64 Copynumber: 2.4 Consensus size: 64
40726388 AAAACCACTG
* *
40726398 ATGGCTTTGTGCCAATCATATTACCGTTACCGATGGCTGTGTGCCGATCATAACACTACTACTA
1 ATGGCTTTGTACCAATCATATTACCGTTACCGATGGCTGTATGCCGATCATAACACTACTACTA
* * * * * *
40726462 ATGGCTTTGTACCGATCATGTTACCGTTACTGATGGCTGTATGCCGATCATATCACTGCTACTG
1 ATGGCTTTGTACCAATCATATTACCGTTACCGATGGCTGTATGCCGATCATAACACTACTACTA
** *
40726526 ATGAATTTGTACCAATCACATTAC
1 ATGGCTTTGTACCAATCATATTAC
40726550 TGTACTTATG
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
64 75 1.00
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (64 bp):
ATGGCTTTGTACCAATCATATTACCGTTACCGATGGCTGTATGCCGATCATAACACTACTACTA
Found at i:40734911 original size:4 final size:4
Alignment explanation
Indices: 40734869--40734904 Score: 63
Period size: 4 Copynumber: 8.8 Consensus size: 4
40734859 AATTGTGTAG
40734869 AAAT AATAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAA
40734905 AATAAATCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 27 0.87
5 4 0.13
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:40735252 original size:12 final size:12
Alignment explanation
Indices: 40735235--40735265 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
40735225 AAAAAAATAG
40735235 ATATATACATAT
1 ATATATACATAT
40735247 ATATATACATAT
1 ATATATACATAT
*
40735259 AAATATA
1 ATATATA
40735266 AAAGAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (12 bp):
ATATATACATAT
Found at i:40736354 original size:525 final size:523
Alignment explanation
Indices: 40735456--40736487 Score: 1895
Period size: 525 Copynumber: 2.0 Consensus size: 523
40735446 CATATGAAAA
40735456 TTATAAAAAATAAAAATAATAATATCAATTAATTTCAAGGAAAATAAAAAAGGGACTAAATTGAA
1 TTATAAAAAATAAAAATAATAATATCAATTAATTTCAAGGAAAATAAAAAAGGGACTAAATTGAA
40735521 CTGCAAATAAAAAAATCTGGGGTAAATCTACAAATAAATAAAGTCCAAAGGACCGTATTGAACGC
66 CTGCAAATAAAAAAATCTGGGGTAAATCTACAAATAAATAAAGTCCAAAGGACCGTATTGAACGC
*
40735586 GAGAATAATCCTGGAGGGACTAGAAGGAAATTTTCCCTTTCCCTCTAAATGGCGTCGTTCCATAA
131 GAGAATAATCCTGGAGGGACTAGAAGGAAATTTTCCCTTTCCCTCTAAACGGCGTCGTTCCATAA
*
40735651 GGACCAAATTGAAATTGAAAAGAAATTAAAGGGCGAATTTAAAAAATATAAAAAATTTAATTGTA
196 GGACCAAATTGAAATTAAAAAGAAATTAAAGGGCGAATTTAAAAAATATAAAAAATTTAATTGTA
* *
40735716 AACATATTAAAAGGCGGAGGGGCTAAAAGCGCAATTTTCCCCTCCGCTCAAAAACGTTCGGATCC
261 AACATATTAAAAGGCGGAGGGGCTAAAAGCACAATTTTCCCCTCCGCTCAAAAACGCTCGGATCC
40735781 TAGGCCGGGTCGCATCGGTGTCGGGTCGACCCATGCCCAAAACGACGCCATCTTGAAGGGCTATT
326 TAGGCCGGGTCGCATCGGTGTCGGGTCGACCCATGCCCAAAACGACGCCATCTTGAAGGGCTATT
* *
40735846 TAAACCAATTTTTGTTCAAAAAAACACATTTTCATTCTTTCTCAGAAAAAACCAAAAAAAACTCC
391 TAAACCAATTTTTGTTCAAAAAAACACATTTTCATTCCTTCTCAG-AAAAACAAAAAAAAACTCC
40735911 TTAAAAACTCTCTCCCCTCCCCAAACATCCGGCCAGGATCCGATCACCGGCCAGGATCCGGTCAT
455 TTAAAAACTCTCTCCCCTCCCCAAACATCCGGCCAGGATCCGATCACCGGCCAGGATCCGGTCAT
40735976 CGGC
520 CGGC
40735980 TTATAAAAAATAAAAATAATAATATCAATTAATTTCAAGGAAAATAAAAAAAGGGACTAAATTGA
1 TTATAAAAAATAAAAATAATAATATCAATTAATTTCAAGGAAAAT-AAAAAAGGGACTAAATTGA
40736045 ACTGCAAATAAAAAAATCTGGGGTAAATCTACAAATAAATAAAGTCCAAAGGACCGTATTGAACG
65 ACTGCAAATAAAAAAATCTGGGGTAAATCTACAAATAAATAAAGTCCAAAGGACCGTATTGAACG
*
40736110 CGCA-AATAATCCTGGAGGGACTAGAAGGAAATTTTCCTTTTCCCTCTAAACGGCGTCGTTCCAT
130 CG-AGAATAATCCTGGAGGGACTAGAAGGAAATTTTCCCTTTCCCTCTAAACGGCGTCGTTCCAT
* *
40736174 AAGGACCAAATTGAAATTAAAAATAAATTAAATGGCGAATTTAAAAAATATAAAAAATTTAATTG
194 AAGGACCAAATTGAAATTAAAAAGAAATTAAAGGGCGAATTTAAAAAATATAAAAAATTTAATTG
40736239 TAAACATATTAAAAGGCGGAGGGGCTAAAAGCACAATTTTCCCCTCCGCTCAAAAACGCTCGGAT
259 TAAACATATTAAAAGGCGGAGGGGCTAAAAGCACAATTTTCCCCTCCGCTCAAAAACGCTCGGAT
**
40736304 CCTAGGCCGGGTCGGGTCGGTGTCGGGTCGACCCATGCCCAAAACGACGCCATCTTGAAGGGCTA
324 CCTAGGCCGGGTCGCATCGGTGTCGGGTCGACCCATGCCCAAAACGACGCCATCTTGAAGGGCTA
*
40736369 TTTAAACCAATTTTTGTTTAAAAAAACACATTTTCATTCCTTCTCAGAAAAACAAAAAAAAACTC
389 TTTAAACCAATTTTTGTTCAAAAAAACACATTTTCATTCCTTCTCAGAAAAACAAAAAAAAACTC
* * *
40736434 CTTAAAAACTCTCTCCCCTCCCTAAACATCCGGCCAGGATCCGGTCATCGGCCA
454 CTTAAAAACTCTCTCCCCTCCCCAAACATCCGGCCAGGATCCGATCACCGGCCA
40736488 CCGCACCGAC
Statistics
Matches: 491, Mismatches: 15, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
524 113 0.23
525 377 0.77
526 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (523 bp):
TTATAAAAAATAAAAATAATAATATCAATTAATTTCAAGGAAAATAAAAAAGGGACTAAATTGAA
CTGCAAATAAAAAAATCTGGGGTAAATCTACAAATAAATAAAGTCCAAAGGACCGTATTGAACGC
GAGAATAATCCTGGAGGGACTAGAAGGAAATTTTCCCTTTCCCTCTAAACGGCGTCGTTCCATAA
GGACCAAATTGAAATTAAAAAGAAATTAAAGGGCGAATTTAAAAAATATAAAAAATTTAATTGTA
AACATATTAAAAGGCGGAGGGGCTAAAAGCACAATTTTCCCCTCCGCTCAAAAACGCTCGGATCC
TAGGCCGGGTCGCATCGGTGTCGGGTCGACCCATGCCCAAAACGACGCCATCTTGAAGGGCTATT
TAAACCAATTTTTGTTCAAAAAAACACATTTTCATTCCTTCTCAGAAAAACAAAAAAAAACTCCT
TAAAAACTCTCTCCCCTCCCCAAACATCCGGCCAGGATCCGATCACCGGCCAGGATCCGGTCATC
GGC
Found at i:40736851 original size:9 final size:9
Alignment explanation
Indices: 40736837--40736867 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
40736827 GTTAAACGAA
40736837 TCGAGTTAT
1 TCGAGTTAT
*
40736846 TCGAGTTAA
1 TCGAGTTAT
40736855 TCGAGTTAT
1 TCGAGTTAT
40736864 TCGA
1 TCGA
40736868 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:40739679 original size:169 final size:169
Alignment explanation
Indices: 40739150--40739656 Score: 813
Period size: 169 Copynumber: 3.0 Consensus size: 169
40739140 TCTTTTAAAT
* * * *
40739150 TGCAATGTTGGGGAAATAAGATTCGC--CGTCGTAGCTTCAATCTGTTCCACTATAATGCCAAAG
1 TGCAATGCTAGGGAAATAAGATTCGCTACCTC-TAGCTTTAATCTGTTCCACTATAATGCCAAAG
*
40739213 AGATAGGATTCGCTGCCCACAGCTTTAATCCACTCCACTTCAGCTATTTCAAGTCTTAACACCAG
65 AGATAGGATTCGCTGCCCACAGCTTTAATCCGCTCCACTTCAGCTATTTCAAGTCTTAACACCAG
40739278 GGAGATAAGATTCACTGCCCTCAGCTTTAATCTGCTCCGC
130 GGAGATAAGATTCACTGCCCTCAGCTTTAATCTGCTCCGC
* * *
40739318 TGCAATGCTAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTATTCCACTATAATGCCAAAGA
1 TGCAATGCTAGGGAAATAAGATTCGCTACCTCTAGCTTTAATCTGTTCCACTATAATGCCAAAGA
* *
40739383 GATAGGATTCGCTGCCCACAGCTTTAATCCGCTTCACTTCAGCTATTTCAAGTCTGAACACCAGG
66 GATAGGATTCGCTGCCCACAGCTTTAATCCGCTCCACTTCAGCTATTTCAAGTCTTAACACCAGG
* * * *
40739448 GAGATAAGATTCGCCGCCCTCAACTTTAATCTGCTCCGT
131 GAGATAAGATTCACTGCCCTCAGCTTTAATCTGCTCCGC
* *
40739487 TGCAATGCTAGGGAAAAAAGATTCGCTACCTCTAGCTTTAATCTGTTTCACTATAATGCCAAAGA
1 TGCAATGCTAGGGAAATAAGATTCGCTACCTCTAGCTTTAATCTGTTCCACTATAATGCCAAAGA
*
40739552 GATAGGATTCTCTGCCCACAGCTTTAATCCGCTCCACTTCAGCTATTTCAAGTCTTAACATCC-G
66 GATAGGATTCGCTGCCCACAGCTTTAATCCGCTCCACTTCAGCTATTTCAAGTCTTAACA-CCAG
*
40739616 GGAGATAAGATTCACTACCCTCAGCTTTAATCTGCTCCGC
130 GGAGATAAGATTCACTGCCCTCAGCTTTAATCTGCTCCGC
40739656 T
1 T
40739657 ATAACGTCAG
Statistics
Matches: 310, Mismatches: 26, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
168 23 0.07
169 283 0.91
170 4 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (169 bp):
TGCAATGCTAGGGAAATAAGATTCGCTACCTCTAGCTTTAATCTGTTCCACTATAATGCCAAAGA
GATAGGATTCGCTGCCCACAGCTTTAATCCGCTCCACTTCAGCTATTTCAAGTCTTAACACCAGG
GAGATAAGATTCACTGCCCTCAGCTTTAATCTGCTCCGC
Found at i:40739739 original size:44 final size:44
Alignment explanation
Indices: 40739675--40739851 Score: 237
Period size: 44 Copynumber: 4.0 Consensus size: 44
40739665 AGGAAAGTAA
* *
40739675 GATTCACGATCTTCAGCCTATTCCACTGCTAACCAGGGAGATAG
1 GATTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAG
* * *
40739719 GATTCACAACCTTTAACCTATTCCACTGCTGACCAGGGAGATAG
1 GATTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAG
* * *
40739763 GATTCACAATCTTCAACCCATTCCACTGTTGACCAGGGAGATAG
1 GATTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAG
* * * **
40739807 GATTCACAATCTTCAGCCTATTCTACTGCTATCCAAAGAGATAG
1 GATTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAG
40739851 G
1 G
40739852 GCTGGGGTCA
Statistics
Matches: 116, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 116 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (44 bp):
GATTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAG
Done.