Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 150 of 208
Found at i:45789759 original size:98 final size:98
Alignment explanation
Indices: 45789415--45789792 Score: 461
Period size: 98 Copynumber: 3.8 Consensus size: 98
45789405 AGGATTTAAT
* ** * ** * *
45789415 TTGTAACTTTAATCTGCTTAACTGTAATGTCGGGGAAGCAAGATTCATCATTGTGG-TTTCTATC
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTT-AATC
45789479 TGTTCCACTGCACCGTCTGGGAAGTAAGATTCGCTG
65 TGTTCCACTGCACC--CTGGGAAGTAAGATTCGCTG
* * ** *
45789515 TTGTAGCTTTAATCTTTTCTTAACTGTAGTGTCGGGGAAGCAAGATTCGCCAATGTGGCTTCAAT
1 TTGTAGCTTTAATC-TTT-TTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAAT
* *
45789580 CTGTTCCACTGCACCGCCTAGGAAGTAAGATTCGTTG
64 CTGTTCCACTGCA-C-CCTGGGAAGTAAGATTCGCTG
45789617 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
* *
45789682 GTTCTACTGCACCCTGGGAAGTAAGATTCGCTA
66 GTTCCACTGCACCCTGGGAAGTAAGATTCGCTG
* * * * * * * *
45789715 TTGTACCTTTAATCTTTTTAATTACAATGTCAGGGACGTAAGATTCGCCGTTGTAGCTTTAATTT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
45789780 GTTCCACTGCACC
66 GTTCCACTGCACC
45789793 GCAATCTTCA
Statistics
Matches: 244, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
98 87 0.36
99 1 0.00
100 66 0.27
101 4 0.02
102 82 0.34
103 3 0.01
104 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (98 bp):
TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
GTTCCACTGCACCCTGGGAAGTAAGATTCGCTG
Found at i:45792256 original size:50 final size:48
Alignment explanation
Indices: 45792155--45792269 Score: 117
Period size: 50 Copynumber: 2.3 Consensus size: 48
45792145 TGGCCTCTCC
*
45792155 TTTTCTTTTTTCTTTTTGTCATTTTGATTTTGATTTTGATTTTTTTCTTT
1 TTTTCTTTTTT-TTTTTGTCATTTTGATTTTCATTTT-ATTTTTTTCTTT
** * *
45792205 TTTTCTTTCTTTTTTTTGTTTTTTTTATTTTCATTTT-TTTGATTTTGTTT
1 TTTTCTTT-TTTTTTTTGTCATTTTGATTTTCATTTTATTT--TTTTCTTT
*
45792255 TTTT-TTTATTTTTTT
1 TTTTCTTTTTTTTTTT
45792270 ATTTCAATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
48 10 0.18
49 3 0.05
50 40 0.71
51 3 0.05
ACGTcount: A:0.07, C:0.06, G:0.06, T:0.81
Consensus pattern (48 bp):
TTTTCTTTTTTTTTTTGTCATTTTGATTTTCATTTTATTTTTTTCTTT
Found at i:45792259 original size:15 final size:14
Alignment explanation
Indices: 45792182--45792259 Score: 66
Period size: 14 Copynumber: 5.4 Consensus size: 14
45792172 GTCATTTTGA
* *
45792182 TTTTGATTTTGATT
1 TTTTTATTTTGTTT
* *
45792196 TTTTTCTTTTTTTCT
1 TTTTTATTTTGTT-T
*
45792211 TTCTTTTTTTTGTTT
1 TT-TTTATTTTGTTT
*
45792226 TTTTTATTTTCATTT
1 TTTTTATTTT-GTTT
*
45792241 TTTTGATTTTGTTT
1 TTTTTATTTTGTTT
45792255 TTTTT
1 TTTTT
45792260 TTATTTTTTT
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
14 23 0.46
15 18 0.36
16 9 0.18
ACGTcount: A:0.06, C:0.05, G:0.06, T:0.82
Consensus pattern (14 bp):
TTTTTATTTTGTTT
Found at i:45792270 original size:8 final size:8
Alignment explanation
Indices: 45792188--45792273 Score: 66
Period size: 8 Copynumber: 10.1 Consensus size: 8
45792178 TTGATTTTGA
*
45792188 TTTTGATT
1 TTTTTATT
*
45792196 TTTTTCTT
1 TTTTTATT
*
45792204 TTTTTCTT
1 TTTTTATT
*
45792212 TCTTTTTTT
1 T-TTTTATT
*
45792221 TGTTTTTTT
1 T-TTTTATT
45792230 TATTTTCATT
1 T-TTTT-ATT
45792240 TTTTTGATT
1 TTTTT-ATT
45792249 TTGTTT-TT
1 TT-TTTATT
45792257 TTTTTATT
1 TTTTTATT
45792265 TTTTTATT
1 TTTTTATT
45792273 T
1 T
45792274 CAATTTTTCT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
7 3 0.04
8 30 0.45
9 28 0.42
10 6 0.09
ACGTcount: A:0.07, C:0.05, G:0.05, T:0.84
Consensus pattern (8 bp):
TTTTTATT
Found at i:45792280 original size:25 final size:24
Alignment explanation
Indices: 45792225--45792298 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 24
45792215 TTTTTTTGTT
**
45792225 TTTTTTATTTTCATTTTTTTGATTTTG
1 TTTTTT-TTTT-ATTTTTTT-ATTTAA
45792252 TTTTTTTTTTATTTTTTTATTTCAA
1 TTTTTTTTTTATTTTTTTATTT-AA
* * *
45792277 TTTTTCTTTTCTTTTTTGATTT
1 TTTTTTTTTTATTTTTTTATTT
45792299 TGATTGTGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 4 0.10
25 27 0.66
26 4 0.10
27 6 0.15
ACGTcount: A:0.11, C:0.05, G:0.04, T:0.80
Consensus pattern (24 bp):
TTTTTTTTTTATTTTTTTATTTAA
Found at i:45792281 original size:1 final size:1
Alignment explanation
Indices: 45792194--45792269 Score: 53
Period size: 1 Copynumber: 76.0 Consensus size: 1
45792184 TTGATTTTGA
* * * * * ** ** *
45792194 TTTTTTTCTTTTTTTCTTTCTTTTTTTTGTTTTTTTTATTTTCATTTTTTTGATTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
45792259 TTTATTTTTTT
1 TTTTTTTTTTT
45792270 ATTTCAATTT
Statistics
Matches: 55, Mismatches: 20, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.05, C:0.05, G:0.04, T:0.86
Consensus pattern (1 bp):
T
Found at i:45797513 original size:3 final size:3
Alignment explanation
Indices: 45797505--45797573 Score: 129
Period size: 3 Copynumber: 23.0 Consensus size: 3
45797495 AAAGATAAAC
*
45797505 ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
45797553 ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA
45797574 CATATACTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:45800042 original size:21 final size:21
Alignment explanation
Indices: 45800012--45800073 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
45800002 TGATCAGTTT
*
45800012 AACCCTTATGGGTTTTCGTTC
1 AACCCTTATGGGTTTCCGTTC
* * *
45800033 AACTCTTATGAGCTTCCGTTC
1 AACCCTTATGGGTTTCCGTTC
45800054 AACCCTTATGGGTTTCCGTT
1 AACCCTTATGGGTTTCCGTT
45800074 TAGCACTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.40
Consensus pattern (21 bp):
AACCCTTATGGGTTTCCGTTC
Found at i:45802347 original size:59 final size:59
Alignment explanation
Indices: 45802271--45802428 Score: 196
Period size: 59 Copynumber: 2.7 Consensus size: 59
45802261 GAGGGAGAAA
* * *
45802271 CCCATAGCA-CTTACTGTGAAAGCCCGTCGGGACTGTAAACATACGATTCTGTGTGTTGC
1 CCCATAGCACCTT-CTGTGAAAGTCCGTCGGGACAGTAAACACACGATTCTGTGTGTTGC
* * *
45802330 CTCATAGCACCTTCTGTGAAAGTCTG-CTGGGACAGTAAACACATGATTCTGTGTGTTGC
1 CCCATAGCACCTTCTGTGAAAGTCCGTC-GGGACAGTAAACACACGATTCTGTGTGTTGC
* *
45802389 CCCAT-GACACCTTCTATGAAAGTCCGTCGGGACAATAAAC
1 CCCATAG-CACCTTCTGTGAAAGTCCGTCGGGACAGTAAAC
45802429 TCGTAATTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
58 2 0.02
59 79 0.93
60 4 0.05
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (59 bp):
CCCATAGCACCTTCTGTGAAAGTCCGTCGGGACAGTAAACACACGATTCTGTGTGTTGC
Found at i:45802442 original size:59 final size:59
Alignment explanation
Indices: 45802316--45802448 Score: 153
Period size: 59 Copynumber: 2.3 Consensus size: 59
45802306 TAAACATACG
* * * * *
45802316 ATTCTGTGTGTTGCCTCATAGCACCTTCTGTGAAAGTCTGCTGGGACAGTAAACACATG
1 ATTCTGTGTGTTGCCCCATAGCACCTTCTATGAAAGTCCGCTGGGACAATAAACACATA
* *
45802375 ATTCTGTGTGTTGCCCCAT-GACACCTTCTATGAAAGTCCG-TCGGGACAATAAACTCGTA
1 ATTCTGTGTGTTGCCCCATAG-CACCTTCTATGAAAGTCCGCT-GGGACAATAAACACATA
* *
45802434 ATTTTGTGTATTGCC
1 ATTCTGTGTGTTGCC
45802449 TATGTGTCGT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
58 2 0.03
59 61 0.97
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (59 bp):
ATTCTGTGTGTTGCCCCATAGCACCTTCTATGAAAGTCCGCTGGGACAATAAACACATA
Found at i:45805301 original size:2 final size:2
Alignment explanation
Indices: 45805294--45805334 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
45805284 CAACCAACTA
45805294 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45805335 ATTTTTTAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:45807329 original size:16 final size:17
Alignment explanation
Indices: 45807308--45807341 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
45807298 AATTATTTTC
45807308 TAAAA-TTTAATTTTAT
1 TAAAATTTTAATTTTAT
*
45807324 TAAAATTTTTATTTTAT
1 TAAAATTTTAATTTTAT
45807341 T
1 T
45807342 TTATCTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TAAAATTTTAATTTTAT
Found at i:45807910 original size:10 final size:10
Alignment explanation
Indices: 45807889--45807963 Score: 75
Period size: 10 Copynumber: 7.5 Consensus size: 10
45807879 TCTCAACAAA
45807889 AATTATAAAAT
1 AATT-TAAAAT
*
45807900 AATTCAAAAT
1 AATTTAAAAT
45807910 AATTTTAAAAT
1 AA-TTTAAAAT
45807921 AATTTAAAAT
1 AATTTAAAAT
**
45807931 AATTTTTAA-
1 AATTTAAAAT
45807940 AATTTAAAAT
1 AATTTAAAAT
45807950 -ATTTATAAA-
1 AATTTA-AAAT
45807959 AATTT
1 AATTT
45807964 TTAAAAAATA
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
9 12 0.22
10 29 0.54
11 13 0.24
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (10 bp):
AATTTAAAAT
Found at i:45807918 original size:21 final size:21
Alignment explanation
Indices: 45807889--45807942 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
45807879 TCTCAACAAA
*
45807889 AATTATAAAATAATTCAAAAT
1 AATTTTAAAATAATTCAAAAT
*
45807910 AATTTTAAAATAATTTAAAAT
1 AATTTTAAAATAATTCAAAAT
45807931 AATTTTTAAAAT
1 AA-TTTTAAAAT
45807943 TTAAAATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 21 0.70
22 9 0.30
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTTTAAAATAATTCAAAAT
Found at i:45807958 original size:18 final size:19
Alignment explanation
Indices: 45807900--45807959 Score: 68
Period size: 21 Copynumber: 3.1 Consensus size: 19
45807890 ATTATAAAAT
* *
45807900 AATTCAAAATAATTTTAAAA
1 AATTTAAAATAA-TTTATAA
*
45807920 TAATTTAAAATAATTTTTAA
1 -AATTTAAAATAATTTATAA
45807940 AATTTAAAAT-ATTTATAA
1 AATTTAAAATAATTTATAA
45807958 AA
1 AA
45807960 ATTTTTAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
18 9 0.26
19 10 0.29
20 5 0.14
21 11 0.31
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTTAAAATAATTTATAA
Found at i:45807960 original size:19 final size:19
Alignment explanation
Indices: 45807921--45807987 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 19
45807911 ATTTTAAAAT
*
45807921 AATTTAAAATAATTT-TTAA
1 AATTTAAAAT-ATTTATAAA
45807940 AATTTAAAATATTTATAAA
1 AATTTAAAATATTTATAAA
* *
45807959 AATTTTTAAAAAATATATAAAA
1 AA--TTTAAAATATTTAT-AAA
45807981 AATTTAA
1 AATTTAA
45807988 GATTTAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 4 0.10
19 15 0.37
20 5 0.12
21 12 0.29
22 5 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTTAAAATATTTATAAA
Found at i:45807962 original size:28 final size:29
Alignment explanation
Indices: 45807913--45807969 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
45807903 TCAAAATAAT
45807913 TTTAAAATAATTTAAAATAATTTTTAAAA
1 TTTAAAATAATTTAAAATAATTTTTAAAA
45807942 TTTAAAAT-ATTTATAAA-AATTTTTAAAA
1 TTTAAAATAATTTA-AAATAATTTTTAAAA
45807970 AATATATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 16 0.59
29 11 0.41
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
TTTAAAATAATTTAAAATAATTTTTAAAA
Found at i:45807968 original size:21 final size:21
Alignment explanation
Indices: 45807942--45807981 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
45807932 ATTTTTAAAA
* *
45807942 TTTAAAATATTTATAAAAATT
1 TTTAAAAAATATATAAAAATT
45807963 TTTAAAAAATATATAAAAA
1 TTTAAAAAATATATAAAAA
45807982 ATTTAAGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TTTAAAAAATATATAAAAATT
Found at i:45807970 original size:11 final size:11
Alignment explanation
Indices: 45807945--45807983 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
45807935 TTTAAAATTT
45807945 AAAATATTTATA
1 AAAATATTTA-A
*
45807957 AAAATTTTTAA
1 AAAATATTTAA
*
45807968 AAAATATATAA
1 AAAATATTTAA
45807979 AAAAT
1 AAAAT
45807984 TTAAGATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AAAATATTTAA
Found at i:45814860 original size:7 final size:8
Alignment explanation
Indices: 45814837--45814861 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
45814827 AAAAAGAGAG
45814837 AAGGAAAA
1 AAGGAAAA
45814845 AAGGAAAA
1 AAGGAAAA
45814853 AAGGAAAA
1 AAGGAAAA
45814861 A
1 A
45814862 TAAAAGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (8 bp):
AAGGAAAA
Found at i:45815729 original size:15 final size:15
Alignment explanation
Indices: 45815709--45815767 Score: 70
Period size: 14 Copynumber: 4.0 Consensus size: 15
45815699 TTGAGTAAAA
45815709 AAAAAGTGAAAAATG
1 AAAAAGTGAAAAATG
45815724 AAAAAGTG-AAAATG
1 AAAAAGTGAAAAATG
*
45815738 AAAAA-TAAAAATGATG
1 AAAAAGTGAAAA--ATG
45815754 AAAAAGT-AAAAATG
1 AAAAAGTGAAAAATG
45815768 GAGAGGCTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
13 1 0.03
14 17 0.44
15 8 0.21
16 12 0.31
17 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (15 bp):
AAAAAGTGAAAAATG
Found at i:45815756 original size:16 final size:17
Alignment explanation
Indices: 45815735--45815767 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
45815725 AAAAGTGAAA
45815735 ATGAAAAA-TAAAAATG
1 ATGAAAAAGTAAAAATG
45815751 ATGAAAAAGTAAAAATG
1 ATGAAAAAGTAAAAATG
45815768 GAGAGGCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (17 bp):
ATGAAAAAGTAAAAATG
Found at i:45815764 original size:7 final size:8
Alignment explanation
Indices: 45815709--45815765 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 8
45815699 TTGAGTAAAA
45815709 AAAAAGTG
1 AAAAAGTG
45815717 AAAAA-TG
1 AAAAAGTG
45815724 AAAAAGTG
1 AAAAAGTG
45815732 -AAAA-TG
1 AAAAAGTG
45815738 AAAAA-T-
1 AAAAAGTG
45815744 AAAAATGATG
1 AAAAA-G-TG
45815754 AAAAAGT-
1 AAAAAGTG
45815761 AAAAA
1 AAAAA
45815766 TGGAGAGGCT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
6 7 0.16
7 21 0.49
8 8 0.19
9 2 0.05
10 5 0.12
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (8 bp):
AAAAAGTG
Found at i:45817028 original size:44 final size:44
Alignment explanation
Indices: 45816970--45817096 Score: 209
Period size: 44 Copynumber: 2.9 Consensus size: 44
45816960 GGTGAAATCA
* *
45816970 CAAGTTCTAGCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTG
1 CAAGTCCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATTG
* * *
45817014 CAAGTCTTAACTCCCTGACCAGTAGTGGAATAGGTAGAAGATTG
1 CAAGTCCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATTG
45817058 CAAGTCCTAACTCCCTGACCAGCAGTGGAATAGGTTGAA
1 CAAGTCCTAACTCCCTGACCAGCAGTGGAATAGGTTGAA
45817097 AATTACAGTC
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 75 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (44 bp):
CAAGTCCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATTG
Found at i:45817397 original size:129 final size:128
Alignment explanation
Indices: 45817058--45817449 Score: 603
Period size: 129 Copynumber: 3.1 Consensus size: 128
45817048 TAGAAGATTG
** *
45817058 CAAGTCCTA-ACTCCCTGACCAGCAGTGGAATAGGTTGAAAATTACAG-TCTTGTCTCCCTAAGC
1 CAAGTCCTATA-TCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
* * * *
45817121 AATAGCAGAGCAGATCGAAGAGGGCAAATCTTATCTTCAAGTGTAAGGAAGCATA-TT-AGCCA
65 AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCA
* * *
45817183 TAAGTCCTATTTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGAA
1 CAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCA
*
45817248 GTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCA
66 GTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCA
45817311 CAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGC
1 CAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTT-GGAAATTACAGATCTTGTCTCCCTAAGC
* * *
45817376 AGTAGCGGAGCAGATCAAAGACTGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCA
65 AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCA
*
45817440 CAAATCCTAT
1 CAAGTCCTAT
45817450 CTCCTTGAAG
Statistics
Matches: 243, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
125 41 0.17
126 65 0.27
127 2 0.01
128 39 0.16
129 96 0.40
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (128 bp):
CAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCA
GTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCA
Found at i:45817685 original size:44 final size:45
Alignment explanation
Indices: 45817576--45817685 Score: 107
Period size: 45 Copynumber: 2.5 Consensus size: 45
45817566 AAGCTAGTCT
* * * * *
45817576 TATCCCCCTGAAGTTGCAGTGGGACAGATTGAAGATGACAAATCT
1 TATCTCCCTGAAGTTGCAGTGAGACAAATTGAAGACGACAAATCC
* * * * *
45817621 TATCTCCTTGAGGTTACAGTGA-AGCAAATTGAAGCCGA-TAATCC
1 TATCTCCCTGAAGTTGCAGTGAGA-CAAATTGAAGACGACAAATCC
45817665 TATCTCCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTG
45817686 GAGTGGATTA
Statistics
Matches: 51, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
44 23 0.45
45 28 0.55
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (45 bp):
TATCTCCCTGAAGTTGCAGTGAGACAAATTGAAGACGACAAATCC
Found at i:45817857 original size:44 final size:44
Alignment explanation
Indices: 45817747--45817861 Score: 110
Period size: 44 Copynumber: 2.6 Consensus size: 44
45817737 TGGCATCAGG
* * * *
45817747 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAAG
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAGAAAACAAA
* * * *
45817791 TCTTAT-TCCCCT-AAAGTCACAGTGGGGCAGACCGA-ATAAGCAAA
1 TCTTATCT-CCCTGAGA-TTACAGTGGAGCAGACCGAGA-AAACAAA
45817835 TCTTATCTCCCTGAGATTACAGTGGAG
1 TCTTATCTCCCTGAGATTACAGTGGAG
45817862 TAGATTGAAG
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
43 3 0.05
44 49 0.89
45 3 0.05
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAGAAAACAAA
Found at i:45817942 original size:217 final size:218
Alignment explanation
Indices: 45817445--45817959 Score: 681
Period size: 218 Copynumber: 2.4 Consensus size: 218
45817435 AGCCACAAAT
* * *
45817445 CCTATCTCCTTGAAGTTTTAGTGGAGCGGATTAAAGTAATAAATCTTATCTCTCTGAAGTTGCAG
1 CCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAG
* * * * * *
45817510 TAGAGTGGATCGCATTAGGTCTTATCTCTCTAAGGTTGCGGCGGAACAGACTGAGTAAGCTAGTC
66 TAGAGTGGATCGCATCAGGTCTTATCTCCCTAAGGTTGCAGCGGAACAGACTGAGAAAACAAGTC
* ** ** * * *
45817575 TTATCCCCCTGAAGTTGCAGTGGGACAGATTGAAGATGACAAATCTTATCTCCTTGAGGTTACAG
131 TTATCCCCCTAAAGTCACAGTGGGACAGACCGAAGAAGACAAATCTTATCTCCCTGAGATTACAG
*
45817640 TGAAGCAAATTGAAGCCGATAAT
196 TGAAGCAAATTGAAGCCGATAAC
* * * *
45817663 CCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATAATAGATCTTATCTTTCTGAAGTTGCAG
1 CCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAG
* * * *
45817728 TAGAGTGGATGGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAAGTC
66 TAGAGTGGATCGCATCAGGTCTTATCTCCCTAAGGTTGCAGCGGAACAGACTGAGAAAACAAGTC
* * *
45817793 TTATTCCCCTAAAGTCACAGTGGGGCAGACCGAATAAG-CAAATCTTATCTCCCTGAGATTACAG
131 TTATCCCCCTAAAGTCACAGTGGGACAGACCGAAGAAGACAAATCTTATCTCCCTGAGATTACAG
* * * *
45817857 TGGAGTAGATTGAAGTCGATAAC
196 TGAAGCAAATTGAAGCCGATAAC
* * *
45817880 CCTATCTCCCTAAAGTTGTAGTTGAGCGGGTTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAG
1 CCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAG
**
45817945 TAGAGCAGATCGCAT
66 TAGAGTGGATCGCAT
45817960 AAATTCTTGC
Statistics
Matches: 254, Mismatches: 43, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
217 112 0.44
218 142 0.56
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (218 bp):
CCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAG
TAGAGTGGATCGCATCAGGTCTTATCTCCCTAAGGTTGCAGCGGAACAGACTGAGAAAACAAGTC
TTATCCCCCTAAAGTCACAGTGGGACAGACCGAAGAAGACAAATCTTATCTCCCTGAGATTACAG
TGAAGCAAATTGAAGCCGATAAC
Found at i:45823076 original size:287 final size:286
Alignment explanation
Indices: 45822519--45823140 Score: 670
Period size: 289 Copynumber: 2.2 Consensus size: 286
45822509 TTTTTAATTT
* * * ** * * * ** *
45822519 AAAAGACTAAAATATCTTCGAATAATATAAGTTATTTTAAATATGGTATGACATTTTTTTAATTT
1 AAAAGACTAAAATACCTTCGAATAATATAACTCATTTTAAATACAGAAGGACATCTTCGTAATTC
* *
45822584 CCTAAACAAGTTGGTGCCTGGTTGACTCATGATACCAACTCAGCCAAGAATTTTATTAATAGTTT
66 CCTAAACAAGTTGGTGCCTGGTTGACTCATGATACCAACTCAGCCAAGAATCTTA-TAATAG-AT
* *
45822649 AGATACAATTGATGGAATTAATAAGTGTGCATAATAAAATTAAAATGTATAAAAGTATTAAAAAA
129 AGATACAATTGATGGAAGTAATAAGTGTGCATAATAAAATTAAAATGTATAAAAGTATAAAAAAA
* * * *
45822714 ACTTTTAGTGGTAAATTAAATATTTTACTAATGCAATTGACTTATGTGGGTTCAAATCTCACCAT
194 ACTTTTAGCGGTAAATTAAAGATTTTACTAATACAATTG---TATGTAGGTTCAAATCTCACCAT
* *
45822779 GTGCATATTTTTATT-G-GTGTTTTAAAGTA
256 ATGCATATTTTTATTAGTGTGTTTTAAAATA
*
45822808 AAAAGATTAAAATACCTTCGAATAATATAACTCATTTTAAATACAGAAGGACATCTTCGTAATTC
1 AAAAGACTAAAATACCTTCGAATAATATAACTCATTTTAAATACAGAAGGACATCTTCGTAATT-
* * * * *
45822873 CCCTAATCGAGTTGGTGTCTGGTTTACTCAT-ATCACCAACTCAGTCAAGAA-CTTA-AATA-AT
65 CCCTAAACAAGTTGGTGCCTGGTTGACTCATGAT-ACCAACTCAGCCAAGAATCTTATAATAGAT
* * *
45822934 AG-TACAATTGATGGAGGTAATAAAGTGTGCATAATAAATTTAGAATGTATAAAAATGTCA-AAA
129 AGATACAATTGATGGAAGTAAT-AAGTGTGCATAATAAAATTAAAATGTAT-AAAA-GT-ATAAA
* * * *
45822997 AAAAAGTTTAGGTAAGCGGTAATTTAAAGGTTTTTCTAATACAATTG-ATGTAGGTTCAAATCTC
190 AAAAACTTT---T-AGCGGTAAATTAAAGATTTTACTAATACAATTGTATGTAGGTTCAAATCTC
* *
45823061 ACCATATGCATATTTTTATTAGTTTTTTTTAAAATA
251 ACCATATGCATATTTTTATTAGTGTGTTTTAAAATA
** * *
45823097 AAACCACTAAAATACCCTT-GAATAATATTACCCATTTTAAATAC
1 AAAAGACTAAAATA-CCTTCGAATAATATAACTCATTTTAAATAC
45823141 GAAAATACAT
Statistics
Matches: 279, Mismatches: 41, Indels: 26
0.81 0.12 0.08
Matches are distributed among these distances:
284 17 0.06
285 29 0.10
286 4 0.01
287 51 0.18
288 2 0.01
289 102 0.37
290 47 0.17
291 27 0.10
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (286 bp):
AAAAGACTAAAATACCTTCGAATAATATAACTCATTTTAAATACAGAAGGACATCTTCGTAATTC
CCTAAACAAGTTGGTGCCTGGTTGACTCATGATACCAACTCAGCCAAGAATCTTATAATAGATAG
ATACAATTGATGGAAGTAATAAGTGTGCATAATAAAATTAAAATGTATAAAAGTATAAAAAAAAC
TTTTAGCGGTAAATTAAAGATTTTACTAATACAATTGTATGTAGGTTCAAATCTCACCATATGCA
TATTTTTATTAGTGTGTTTTAAAATA
Found at i:45823190 original size:289 final size:281
Alignment explanation
Indices: 45822652--45823223 Score: 605
Period size: 289 Copynumber: 2.0 Consensus size: 281
45822642 ATAGTTTAGA
* *
45822652 TACAATTGATGGAATTAATAAGTGTGCATAATAAAATTAAAATGTATAAAAGTATTAAAAAAACT
1 TACAATTGATGGAAGTAATAAGTGTGCATAATAAAATTAAAATGTATAAAAGTATAAAAAAAACT
* * * * *
45822717 TTTAGTGGTAAATTAAATATTTTACTAATGCAATTGACTTATGTGGGTTCAAATCTCACCATGTG
66 TTTAGCGGTAAATTAAAGATTTTACTAATACAATTG---TATGTAGGTTCAAATCTCACCATATG
* * * *
45822782 CATATTTTTATTGGTGTTTTAAAGTAAAAAGATTAAAATACCTTCGAATAATATAACTCATTTTA
128 CATATTTTTATTGGTGTTTTAAAATAAAAACACTAAAATACCTTCGAATAATATAACCCATTTTA
* * **** * *
45822847 AATACAGAAGGACATCTTCGTAATTCCCCTAATCGAGTTGGTGTCTGGTTTACTCAT-ATCACCA
193 AATACAGAAAGACATCTTCGTAATTCCCCTAATCAAGTTGACACCCGATTTACTCATGAT-ACCA
* *
45822911 ACTCAGTCAAGAACTTAAATAATAG
257 ACTCAATCAAGAACATAAATAATAG
* * *
45822936 TACAATTGATGGAGGTAATAAAGTGTGCATAATAAATTTAGAATGTATAAAAATGTCA-AAAAAA
1 TACAATTGATGGAAGTAAT-AAGTGTGCATAATAAAATTAAAATGTAT-AAAA-GT-ATAAAAAA
* * * *
45823000 AAGTTTAGGTAAGCGGTAATTTAAAGGTTTTTCTAATACAATTG-ATGTAGGTTCAAATCTCACC
62 AACTTT---T-AGCGGTAAATTAAAGATTTTACTAATACAATTGTATGTAGGTTCAAATCTCACC
* * * *
45823064 ATATGCATATTTTTATTAGTTTTTTTTAAAATAAAACCACTAAAATACCCTT-GAATAATATTAC
123 ATATGCATATTTTTATT-G-GTGTTTTAAAATAAAAACACTAAAATA-CCTTCGAATAATATAAC
* * * * *
45823128 CCATTTTAAATAC-GAAAATACATTTTTGTAATTTCTCTAATCAAGTTGACACCCGATTTACTCA
185 CCATTTTAAATACAG-AAAGACATCTTCGTAATTCCCCTAATCAAGTTGACACCCGATTTACTCA
* * *
45823192 TGATACCAATTCAATCAATAGCATAAATAATA
249 TGATACCAACTCAATCAAGAACATAAATAATA
45823224 TATAGATGTT
Statistics
Matches: 235, Mismatches: 40, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
284 17 0.07
285 26 0.11
286 4 0.02
287 47 0.20
288 3 0.01
289 104 0.44
290 7 0.03
291 27 0.11
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (281 bp):
TACAATTGATGGAAGTAATAAGTGTGCATAATAAAATTAAAATGTATAAAAGTATAAAAAAAACT
TTTAGCGGTAAATTAAAGATTTTACTAATACAATTGTATGTAGGTTCAAATCTCACCATATGCAT
ATTTTTATTGGTGTTTTAAAATAAAAACACTAAAATACCTTCGAATAATATAACCCATTTTAAAT
ACAGAAAGACATCTTCGTAATTCCCCTAATCAAGTTGACACCCGATTTACTCATGATACCAACTC
AATCAAGAACATAAATAATAG
Found at i:45825899 original size:17 final size:17
Alignment explanation
Indices: 45825873--45825906 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
45825863 TCAAAACAAC
*
45825873 ATAATGAACATTCAAAT
1 ATAATGAACATTAAAAT
*
45825890 ATAATTAACATTAAAAT
1 ATAATGAACATTAAAAT
45825907 GATTACGGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.32
Consensus pattern (17 bp):
ATAATGAACATTAAAAT
Found at i:45834861 original size:2 final size:2
Alignment explanation
Indices: 45834849--45834885 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
45834839 AAATAGTGAT
*
45834849 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45834886 GAATAATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:45838368 original size:12 final size:12
Alignment explanation
Indices: 45838351--45838379 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
45838341 AATTGTGATC
45838351 TATTTTATTGGG
1 TATTTTATTGGG
45838363 TATTTTATTGGG
1 TATTTTATTGGG
45838375 TATTT
1 TATTT
45838380 ATCATAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (12 bp):
TATTTTATTGGG
Found at i:45840151 original size:13 final size:13
Alignment explanation
Indices: 45840133--45840174 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
45840123 AGATTTTTCT
45840133 TAAATATTATCAC
1 TAAATATTATCAC
45840146 TAAATA--ATC-C
1 TAAATATTATCAC
45840156 TAAATATTATCAC
1 TAAATATTATCAC
45840169 TAAATA
1 TAAATA
45840175 AATCAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 7 0.27
11 3 0.12
12 3 0.12
13 13 0.50
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:45840183 original size:23 final size:23
Alignment explanation
Indices: 45840134--45840183 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
45840124 GATTTTTCTT
*
45840134 AAATATTATCACTAAATAATCCT
1 AAATATTATCACTAAATAATCCA
45840157 AAATATTATCACTAAATAAAT-CA
1 AAATATTATCACTAAAT-AATCCA
45840180 AAAT
1 AAAT
45840184 TTAAAAATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 22 0.88
24 3 0.12
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATATTATCACTAAATAATCCA
Found at i:45846591 original size:21 final size:21
Alignment explanation
Indices: 45846567--45846610 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
45846557 CAATATGGAA
45846567 TCAGATTCTGTTTAAAGGCTT
1 TCAGATTCTGTTTAAAGGCTT
45846588 TCAGATTCTGTTTAAAGGCTT
1 TCAGATTCTGTTTAAAGGCTT
45846609 TC
1 TC
45846611 TTTTGATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (21 bp):
TCAGATTCTGTTTAAAGGCTT
Found at i:45848349 original size:23 final size:23
Alignment explanation
Indices: 45848319--45848370 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
45848309 ATTTCGATGC
* *
45848319 CTGTAATATCCCGAAAATTACTA
1 CTGTAATACCCCAAAAATTACTA
45848342 CTGTAATACCCCAAAAATTACTA
1 CTGTAATACCCCAAAAATTACTA
*
45848365 CAGTAA
1 CTGTAA
45848371 GAAAATAGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (23 bp):
CTGTAATACCCCAAAAATTACTA
Found at i:45865209 original size:2 final size:2
Alignment explanation
Indices: 45865202--45865238 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
45865192 ATTCATACTT
45865202 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45865239 TATTTTTATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:45865867 original size:15 final size:14
Alignment explanation
Indices: 45865849--45865878 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
45865839 AATGACTATT
45865849 ACATTAATAATGAAA
1 ACATTAATAAT-AAA
45865864 ACATTAATAATAAA
1 ACATTAATAATAAA
45865878 A
1 A
45865879 TAAGTATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (14 bp):
ACATTAATAATAAA
Found at i:45866252 original size:2 final size:2
Alignment explanation
Indices: 45866243--45866278 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
45866233 CAATATATTG
45866243 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45866279 ACGTTAATCC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45866467 original size:16 final size:16
Alignment explanation
Indices: 45866440--45866479 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
45866430 CCAAATATAT
* *
45866440 TTAATGATTTTATTTA
1 TTAATAATTTTATTAA
*
45866456 TTTATAATTTTATTAA
1 TTAATAATTTTATTAA
45866472 TTAATAAT
1 TTAATAAT
45866480 ATATTGTGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (16 bp):
TTAATAATTTTATTAA
Found at i:45866694 original size:45 final size:45
Alignment explanation
Indices: 45866643--45866732 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
45866633 TAATAAAAAA
45866643 AGATATTCTAGCCAATTCAAAATTTTTTCTAAATTTGCATGTGAT
1 AGATATTCTAGCCAATTCAAAATTTTTTCTAAATTTGCATGTGAT
45866688 AGATATTCTAGCCAATTCAAAATTTTTTCTAAATTTGCATGTGAT
1 AGATATTCTAGCCAATTCAAAATTTTTTCTAAATTTGCATGTGAT
45866733 TTTACACGTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.42
Consensus pattern (45 bp):
AGATATTCTAGCCAATTCAAAATTTTTTCTAAATTTGCATGTGAT
Found at i:45869809 original size:39 final size:38
Alignment explanation
Indices: 45869762--45869863 Score: 116
Period size: 39 Copynumber: 2.6 Consensus size: 38
45869752 ATAAAGATGC
* * *
45869762 TTTAGAGTATTGTGGTATATGCTTAAATGTTATGTGAT
1 TTTAGAGTATTGTGGTATATGCTTAAACGTCATGAGAT
*
45869800 TTTACGAGTATTATGAG-ATATGCTTAAACGTCATGAGAT
1 TTTA-GAGTATTGTG-GTATATGCTTAAACGTCATGAGAT
* *
45869839 TTTATGAGTATGGTGATATATGCTT
1 TTTA-GAGTATTGTGGTATATGCTT
45869864 GTATGTTAAG
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
38 4 0.08
39 48 0.91
40 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.43
Consensus pattern (38 bp):
TTTAGAGTATTGTGGTATATGCTTAAACGTCATGAGAT
Found at i:45877264 original size:54 final size:54
Alignment explanation
Indices: 45877201--45877880 Score: 388
Period size: 54 Copynumber: 12.6 Consensus size: 54
45877191 CTCATTTTCA
* * * * *
45877201 ATCAGAACCTTCAACTTACGAGATTTTACGAATCTTGGAGTTTGCTGATTTACG
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCTTAGAGTCTGCTGATTTACG
* * * * * *
45877255 ATCACAACCTTCTCCTTACGGGATTTTACGGATCTCACAGTCTGCCGATTTACG
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCTTAGAGTCTGCTGATTTACG
* * * * ** *
45877309 ATCACAACTTTCTACTTTCGGGATTTTACAAATCTCGCGATTCAT--TGATTTACG
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCT-TAGAGTC-TGCTGATTTACG
* * * * * * *
45877363 ATCATGACCTTTTACTGACGAGACTTTACAAATC-TCGTAGTCTGCTGATTTACG
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCTTAG-AGTCTGCTGATTTACG
*** ** * * * *
45877417 AT--T-ACGACCTACTTACAAGATTTTACGACTCTCACGA-TCTACTTATTTACG
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCTTA-GAGTCTGCTGATTTACG
* * *
45877468 ATGATAACCTTTTACTTATGGGATTTTACGAAT-TTCATG-GTCTGCTGATTTACG
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCTT-A-GAGTCTGCTGATTTACG
* * * * ** * * *
45877522 ATAATGACCTTTTACTTATGAAATTTTATGAATCTCACGA-T-TAGCTAATTTACG
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCTTA-GAGTCT-GCTGATTTACG
* * * ** *
45877576 ATCA-AGACCTTCTACTTATGAGATTTTACGAATCTTACAGTCCACTGATTTATG
1 ATCATA-ACCTTCTACTTACGGGATTTTACGAATCTTAGAGTCTGCTGATTTACG
* * * * * *
45877630 ATCATGACCTTCTACTTACGGGATTTTACAAACCTTATAGTCCT-TTAATTTACG
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCTTAGAGT-CTGCTGATTTACG
* * * * *
45877684 ATCATGATCTTCTACTTACGGGATTTTACGAATCTCACG-GT-TCGTTGATTTATG
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCTTA-GAGTCT-GCTGATTTACG
* * * * * *
45877738 ATCATAACCTCCTACTTATGGGATTTTACGAATC-TAGCGATCCGTTAATTTACG
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCTTAGAG-TCTGCTGATTTACG
* * * * * *
45877792 TTCATGAGCTTCTACTTACGGGATTTTATGAATCTCACG-GTCCT-CTAATTTACG
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCTTA-GAGT-CTGCTGATTTACG
* * * *
45877846 TTCATAACCTTCTAATTACGTGATTTTATGAATCT
1 ATCATAACCTTCTACTTACGGGATTTTACGAATCT
45877881 AGGTGTGTTT
Statistics
Matches: 485, Mismatches: 112, Indels: 58
0.74 0.17 0.09
Matches are distributed among these distances:
51 33 0.07
52 7 0.01
53 10 0.02
54 425 0.88
55 8 0.02
56 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (54 bp):
ATCATAACCTTCTACTTACGGGATTTTACGAATCTTAGAGTCTGCTGATTTACG
Found at i:45877881 original size:108 final size:108
Alignment explanation
Indices: 45877102--45877882 Score: 485
Period size: 108 Copynumber: 7.3 Consensus size: 108
45877092 AATCACGACT
* * * * * * * * * *
45877102 TTCTACTTACAGGATTTTATGAATCTCGCGGTCC-TCTGATTTAAGATCATGACATTTTACATAT
1 TTCTACTTACGGGATTTTACGAATCTAGCGATCCGT-TAATTTACGATCATGACCTTCTACTTAC
* * * * * * *
45877166 AGGATTTTACGAATCTCATGGGCCACTCATTT-TCAATCAGAACC
65 GGGATTTTACGAATCTCACGGTCCTCTGATTTAT-GATCATAACC
* * * ** * * ** *
45877210 TTCAACTTACGAGATTTTACGAATCTTG-GAGTTTGCTGATTTACGATCACAACCTTCTCCTTAC
1 TTCTACTTACGGGATTTTACGAATCTAGCGA-TCCGTTAATTTACGATCATGACCTTCTACTTAC
* * * * * *
45877274 GGGATTTTACGGATCTCACAGT-CTGCCGATTTACGATCACAACT
65 GGGATTTTACGAATCTCACGGTCCT-CTGATTTATGATCATAACC
* * * * * * * *
45877318 TTCTACTTTCGGGATTTTACAAATCTCGCGATTCATTGATTTACGATCATGACCTTTTACTGACG
1 TTCTACTTACGGGATTTTACGAATCTAGCGATCCGTTAATTTACGATCATGACCTTCTACTTACG
* * * *** * *
45877383 AGACTTTACAAATCTCGTAGT-CTGCTGATTTACGAT--T-ACG
66 GGATTTTACGAATCTCACGGTCCT-CTGATTTATGATCATAACC
** ** * * * *
45877423 ACCTACTTACAAGATTTTACGACTCTCA-CGATCTAC-TT-ATTTACGATGATAACCTTTTACTT
1 TTCTACTTACGGGATTTTACGAATCT-AGCGATC--CGTTAATTTACGATCATGACCTTCTACTT
* * * * * *
45877485 ATGGGATTTTACGAATTTCATGGT-CTGCTGATTTACGATAATGACC
63 ACGGGATTTTACGAATCTCACGGTCCT-CTGATTTATGATCATAACC
* * ** * ** * * *
45877531 TTTTACTTATGAAATTTTATGAATCTCA-CGATTAGCTAATTTACGATCAAGACCTTCTACTTAT
1 TTCTACTTACGGGATTTTACGAATCT-AGCGATCCGTTAATTTACGATCATGACCTTCTACTTAC
* * * * *
45877595 GAGATTTTACGAATCTTACAGTCCACTGATTTATGATCATGACC
65 GGGATTTTACGAATCTCACGGTCCTCTGATTTATGATCATAACC
* * ** * *
45877639 TTCTACTTACGGGATTTTACAAACCTTATAG-TCCTTTAATTTACGATCATGATCTTCTACTTAC
1 TTCTACTTACGGGATTTTACGAATC-TAGCGATCCGTTAATTTACGATCATGACCTTCTACTTAC
*
45877703 GGGATTTTACGAATCTCACGGTTCGT-TGATTTATGATCATAACC
65 GGGATTTTACGAATCTCACGG-TCCTCTGATTTATGATCATAACC
* * * *
45877747 TCCTACTTATGGGATTTTACGAATCTAGCGATCCGTTAATTTACGTTCATGAGCTTCTACTTACG
1 TTCTACTTACGGGATTTTACGAATCTAGCGATCCGTTAATTTACGATCATGACCTTCTACTTACG
* * * *
45877812 GGATTTTATGAATCTCACGGTCCTCTAATTTACGTTCATAACC
66 GGATTTTACGAATCTCACGGTCCTCTGATTTATGATCATAACC
* * *
45877855 TTCTAATTACGTGATTTTATGAATCTAG
1 TTCTACTTACGGGATTTTACGAATCTAG
45877883 GTGTGTTTAG
Statistics
Matches: 520, Mismatches: 134, Indels: 38
0.75 0.19 0.05
Matches are distributed among these distances:
105 78 0.15
106 2 0.00
107 11 0.02
108 422 0.81
109 7 0.01
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (108 bp):
TTCTACTTACGGGATTTTACGAATCTAGCGATCCGTTAATTTACGATCATGACCTTCTACTTACG
GGATTTTACGAATCTCACGGTCCTCTGATTTATGATCATAACC
Found at i:45878324 original size:54 final size:54
Alignment explanation
Indices: 45878212--45878389 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
45878202 TGGTCTATTG
* * * * * *** *
45878212 ATTTACAATGATGACCTTTTACTTATGGGATTTTACGAATCTCACAGTTTGCTG
1 ATTTACGATCATGACCTTCTACTTATGAGATTTTACAAATCTCACAGTCCACTA
* *
45878266 ATTTATGATCATGACCTTCTACTTATGAGATTTTACAAATC-CTACGGTCCACTA
1 ATTTACGATCATGACCTTCTACTTATGAGATTTTACAAATCTC-ACAGTCCACTA
** * *
45878320 ATTTACGATCATGATTTTCTACATA-CAGGATTTTA-AGAATCTCACAGTCCACTA
1 ATTTACGATCATGACCTTCTACTTATGA-GATTTTACA-AATCTCACAGTCCACTA
*
45878374 ATTTACGATCACGACC
1 ATTTACGATCATGACC
45878390 ACCTATTTAC
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
53 3 0.03
54 96 0.96
55 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.37
Consensus pattern (54 bp):
ATTTACGATCATGACCTTCTACTTATGAGATTTTACAAATCTCACAGTCCACTA
Found at i:45878324 original size:108 final size:108
Alignment explanation
Indices: 45878158--45878403 Score: 242
Period size: 108 Copynumber: 2.3 Consensus size: 108
45878148 CTACCTCGTA
* * * ** * * * *
45878158 ATTTATGATGACGACCTTTTACTTACGAGATTTGACAAATCTTGTGGTCTATTGATTTACAATGA
1 ATTTATGATCACGACCTTCTACTTACGAGATTTGACAAATCCTACGGTCCACTAATTTACAATCA
* ** *
45878223 TGACCTTT-TACTTATGGGATTTTACGAATCTCACAGTTTGCTG
66 TGA-CTTTCTACATACAGGATTTTAAGAATCTCACAGTTTGCTG
* * * *
45878266 ATTTATGATCATGACCTTCTACTTATGAGATTTTACAAATCCTACGGTCCACTAATTTACGATCA
1 ATTTATGATCACGACCTTCTACTTACGAGATTTGACAAATCCTACGGTCCACTAATTTACAATCA
* *** *
45878331 TGATTTTCTACATACAGGATTTTAAGAATCTCACAGTCCACTA
66 TGACTTTCTACATACAGGATTTTAAGAATCTCACAGTTTGCTG
* ** *
45878374 ATTTACGATCACGACCACCTATTTACGAGA
1 ATTTATGATCACGACCTTCTACTTACGAGA
45878404 CCTTACGAAT
Statistics
Matches: 109, Mismatches: 28, Indels: 2
0.78 0.20 0.01
Matches are distributed among these distances:
107 3 0.03
108 106 0.97
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (108 bp):
ATTTATGATCACGACCTTCTACTTACGAGATTTGACAAATCCTACGGTCCACTAATTTACAATCA
TGACTTTCTACATACAGGATTTTAAGAATCTCACAGTTTGCTG
Found at i:45878978 original size:54 final size:54
Alignment explanation
Indices: 45878720--45878978 Score: 173
Period size: 54 Copynumber: 4.8 Consensus size: 54
45878710 AAGCTTTAGT
* ** * * * *
45878720 TGATTTACAATCACGAGTTTTTACTTATGGGATTTTACAAATCTCACAGTCCGT
1 TGATTTACGATCACGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCCGC
* * * * * * ** *
45878774 TAATTTATGATGACGACCTTTTACTTACAGGATTTCT-CGATTCTCATGGTTCGC
1 TGATTTACGATCACGACCTTCTACTTACGGGATTT-TACGAATCTCACAGTCCGC
* * *** * *
45878828 TGATTTACGATCACGACTTTCTA-TTATGACTTTTTAAGAATCTCACAAG-CTGC
1 TGATTTACGATCACGACCTTCTACTTACGGGATTTTACGAATCTCAC-AGTCCGC
* * * * * ** * *
45878881 TGATTTACTACCACAAGCTTCTACTTACGGGTTTTTAAAAATCTCGCGGTCCGC
1 TGATTTACGATCACGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCCGC
* *
45878935 TGATTTACGATTACGACCTTCTACTTACGTGATTTTACGAATCT
1 TGATTTACGATCACGACCTTCTACTTACGGGATTTTACGAATCT
45878979 AGACGTGTTG
Statistics
Matches: 149, Mismatches: 51, Indels: 10
0.71 0.24 0.05
Matches are distributed among these distances:
52 1 0.01
53 34 0.23
54 113 0.76
55 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.38
Consensus pattern (54 bp):
TGATTTACGATCACGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCCGC
Found at i:45879359 original size:508 final size:509
Alignment explanation
Indices: 45878438--45879360 Score: 1158
Period size: 508 Copynumber: 1.8 Consensus size: 509
45878428 AATTGCAATC
* * * ** * *
45878438 ACGACCTTTTACTTACGTGATTTTACGAATCTAGGCGTGTTGTGGAAGAAATCAAAATTGACCTT
1 ACGACCTTCTACTTACGTGATTTTACGAATCTAGACGTGTTGAGGAAGAAATCAAAACCGACATC
* * * * *
45878503 TCTACCCTTCAGATCAAGTTAGATGCTAGCCATAATGAATATTGACGTGTTAAGAAAGAACTCAA
66 TCTACCCTTCAAAGCAAGTTAGAAGCTAGACATAATGAATATAGACGTGTTAAGAAAGAACTCAA
* * * *
45878568 CACTGACCTTTAAAGAAAGAGGATAGAGAAATATATATTTTTTACATTGCCTTTGTGAAGCTGAA
131 AACTGAACTTTAAAGAAAGAGGATAGAGAAACATATATTTGTTACATTGCCTTTGTGAAGCTGAA
* * * *
45878633 GCTAGTTTTCTTGACCATACGTTTGAAATAAGGCTTAAAATGAATCGATCTACTCAGAAAACAAG
196 GCTAGTTCTCATCACCATACATTTGAAATAAGGCTTAAAATGAATCGATCTACTCAGAAAACAAG
* * ** *
45878698 GAACTTTTTGTAAAGCTTTAGTTGATTTACAATCACGAGTTTTTACTTATGGGATTTTACAAATC
261 GAACTTTTTGAAAAGCTTTAGTTGATTTACAATCACAACATCTTACTTATGGGATTTTACAAATC
* * * * ** *
45878763 TCACAGTCCGTTAATTTATGATGACGACCTTTTACTTACAGGATTTCTCGATTCTCATGGTTCGC
326 TCACAGTCCGTTAATTTACGATGACGACCATTTACTTACAGGATTTCTAGAGTCTCACAGTTCAC
*
45878828 TGATTTACGATCACGACTTTCTATTATGACTTTTTAAGAATCTCACAAGCTGCTGATTTACTACC
391 TGATTTAAGATCACGACTTTCTATTATGACTTTTTAAGAATCTCACAAGCTGCTGATTTACTACC
45878893 ACAAGCTTCTACTTACGGGTTTTTAAAAATCTCGCGGTCCGCTGATTTACGATT
456 ACAAGCTTCTACTTACGGGTTTTTAAAAATCTCGCGGTCCGCTGATTTACGATT
*
45878947 ACGACCTTCTACTTACGTGATTTTACGAATCTAGACGTGTTGAGGAAGAACTCAAAACCGACATC
1 ACGACCTTCTACTTACGTGATTTTACGAATCTAGACGTGTTGAGGAAGAAATCAAAACCGACATC
* * * ** * *
45879012 TCTACCCTTCAAAGCAAGTTAGAAGCTAGAGATGATTAATATAGGTGTGTTGAGGAAGAACTCAA
66 TCTACCCTTCAAAGCAAGTTAGAAGCTAGACATAATGAATATAGACGTGTTAAGAAAGAACTCAA
* * *
45879077 AACT-AACTTTAAAGAAGGAGGATAGAGGAAACA-AT-TTTGTTACATTGCCTTTGTGAGGCTGG
131 AACTGAACTTTAAAGAAAGAGGATAGA-GAAACATATATTTGTTACATTGCCTTTGTGAAGCTGA
* * * **
45879139 AGGTAGTTCTCATCACCATACATTTGAAATGAGGCTTCAAATGGGTCGATCTACTCAGAAAAACA
195 AGCTAGTTCTCATCACCATACATTTGAAATAAGGCTTAAAATGAATCGATCTACTCAG-AAAACA
* * * * * * **
45879204 ATGAACTTTCTT-AAAAGTTTTAGTTGATTTACAATTACAACATCTTATTTTTTGGATTTTATGA
259 AGGAACTTT-TTGAAAAGCTTTAGTTGATTTACAATCACAACATCTTACTTATGGGATTTTACAA
** * * * *
45879268 ATCTCATGGAT-TGTTGATTTACGATGACGATCATTTACTTACGGGATTT-TAAGAGTCTCACAG
323 ATCTCACAG-TCCGTTAATTTACGATGACGACCATTTACTTACAGGATTTCT-AGAGTCTCACAG
* *
45879331 -TCTACTGATTTAAGATCATGATTTTCTATT
386 TTC-ACTGATTTAAGATCACGACTTTCTATT
45879361 TACGCTGTAC
Statistics
Matches: 343, Mismatches: 65, Indels: 13
0.81 0.15 0.03
Matches are distributed among these distances:
507 76 0.22
508 146 0.43
509 121 0.35
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (509 bp):
ACGACCTTCTACTTACGTGATTTTACGAATCTAGACGTGTTGAGGAAGAAATCAAAACCGACATC
TCTACCCTTCAAAGCAAGTTAGAAGCTAGACATAATGAATATAGACGTGTTAAGAAAGAACTCAA
AACTGAACTTTAAAGAAAGAGGATAGAGAAACATATATTTGTTACATTGCCTTTGTGAAGCTGAA
GCTAGTTCTCATCACCATACATTTGAAATAAGGCTTAAAATGAATCGATCTACTCAGAAAACAAG
GAACTTTTTGAAAAGCTTTAGTTGATTTACAATCACAACATCTTACTTATGGGATTTTACAAATC
TCACAGTCCGTTAATTTACGATGACGACCATTTACTTACAGGATTTCTAGAGTCTCACAGTTCAC
TGATTTAAGATCACGACTTTCTATTATGACTTTTTAAGAATCTCACAAGCTGCTGATTTACTACC
ACAAGCTTCTACTTACGGGTTTTTAAAAATCTCGCGGTCCGCTGATTTACGATT
Found at i:45879560 original size:13 final size:13
Alignment explanation
Indices: 45879542--45879567 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45879532 GAAACAAAGA
45879542 AACCCTAGCCTCT
1 AACCCTAGCCTCT
45879555 AACCCTAGCCTCT
1 AACCCTAGCCTCT
45879568 GTCGCCGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.46, G:0.08, T:0.23
Consensus pattern (13 bp):
AACCCTAGCCTCT
Found at i:45880512 original size:3 final size:3
Alignment explanation
Indices: 45880504--45880586 Score: 60
Period size: 3 Copynumber: 26.7 Consensus size: 3
45880494 TCTAATCCAT
*** * * *
45880504 TTA TTA TTA TTA TTA TTA AGC TTA TTA TGA TTA TTA TTC TTG TTA TTGCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A
*
45880554 TTTA TTA TTA TTA CTT- TCA TTA TTA TTA TTA TT
1 -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT
45880587 TACCCACTTA
Statistics
Matches: 62, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
2 1 0.02
3 55 0.89
4 3 0.05
5 1 0.02
6 2 0.03
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:45880549 original size:21 final size:21
Alignment explanation
Indices: 45880503--45880586 Score: 80
Period size: 21 Copynumber: 3.9 Consensus size: 21
45880493 ATCTAATCCA
**
45880503 TTTATTATTATTATTATTAAG
1 TTTATTATTATTATTATTACT
* *
45880524 CTTATTATGATTATTATT-CT
1 TTTATTATTATTATTATTACT
45880544 TGTTATTGCATTTATTATTATTACT
1 T-TTATT--A-TTATTATTATTACT
*
45880569 TTCATTATTATTATTATT
1 TTTATTATTATTATTATT
45880587 TACCCACTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
21 32 0.63
22 1 0.02
23 1 0.02
24 14 0.27
25 3 0.06
ACGTcount: A:0.27, C:0.06, G:0.05, T:0.62
Consensus pattern (21 bp):
TTTATTATTATTATTATTACT
Found at i:45880854 original size:25 final size:27
Alignment explanation
Indices: 45880803--45880863 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
45880793 AGGCTTTATA
*
45880803 ATTTATATATATACATAGATATGCATAT
1 ATTT-TATATATACATACATATGCATAT
* *
45880831 TTTTTATATGTACATACAT-T-CATAT
1 ATTTTATATATACATACATATGCATAT
45880856 ATTTTATA
1 ATTTTATA
45880864 ATTTATAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 12 0.41
26 1 0.03
27 13 0.45
28 3 0.10
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (27 bp):
ATTTTATATATACATACATATGCATAT
Found at i:45881487 original size:108 final size:106
Alignment explanation
Indices: 45881349--45881552 Score: 309
Period size: 107 Copynumber: 1.9 Consensus size: 106
45881339 AAAAATAACA
* * *
45881349 AAGGTAATATTTTGCTTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTTTCGATTTTTT
1 AAGGAAATATTTTGCTTTGGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTTTCGA-TTTCT
* *
45881414 CGTTTGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAAT
65 CATTTGACCAAATAGCCAAATATCCTCTTAAAATTTCAAAAT
* *
45881456 AAGGAAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTCT
1 AAGGAAATATTTTGC-TTTGGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTTTCGATTTCT
* *
45881521 CATTTGACCAAATAGTCAAATATTCTCTTAAA
65 CATTTGACCAAATAGCCAAATATCCTCTTAAA
45881553 TCTTAATCCA
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
107 45 0.52
108 42 0.48
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (106 bp):
AAGGAAATATTTTGCTTTGGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTTTCGATTTCTC
ATTTGACCAAATAGCCAAATATCCTCTTAAAATTTCAAAAT
Found at i:45885199 original size:29 final size:25
Alignment explanation
Indices: 45885145--45885202 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 25
45885135 AAAAAGAGGG
45885145 AAAAGAAAAAAGAAAAATCAAAGTC
1 AAAAGAAAAAAGAAAAATCAAAGTC
45885170 AAAAGCAAAAAAGAAAATCAATCAAAGTC
1 AAAAG-AAAAAAG-AAA--AATCAAAGTC
45885199 AAAA
1 AAAA
45885203 ATAAGAGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 5 0.17
26 7 0.24
27 3 0.10
29 14 0.48
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.09
Consensus pattern (25 bp):
AAAAGAAAAAAGAAAAATCAAAGTC
Found at i:45885219 original size:17 final size:17
Alignment explanation
Indices: 45885199--45885241 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
45885189 AATCAAAGTC
*
45885199 AAAAATAAGAGAAAAAG
1 AAAAAAAAGAGAAAAAG
*
45885216 AAAAAAAATAGAAAAAG
1 AAAAAAAAGAGAAAAAG
45885233 AAAAGAAAA
1 AAAA-AAAA
45885242 AGGAGAGGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (17 bp):
AAAAAAAAGAGAAAAAG
Found at i:45885243 original size:11 final size:11
Alignment explanation
Indices: 45885211--45885243 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
45885201 AAATAAGAGA
45885211 AAAAGAAAAA-
1 AAAAGAAAAAG
45885221 AAATAGAAAAAG
1 AAA-AGAAAAAG
45885233 AAAAGAAAAAG
1 AAAAGAAAAAG
45885244 GAGAGGTCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.14
11 15 0.71
12 3 0.14
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:45887416 original size:88 final size:88
Alignment explanation
Indices: 45887267--45888724 Score: 2351
Period size: 88 Copynumber: 16.6 Consensus size: 88
45887257 AACAGATCAA
* *
45887267 TGAAGACAACAAATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGTCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
45887332 CTTTCGGTTGTAGCGGAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
45887355 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
45887420 CTCTCGGTTGTAGCGGAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
* * *
45887443 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAACAGATCGAAGACACAAACCTTACCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
45887508 CTCTCGGTTGTAGCGGAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
*
45887531 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
45887596 CTCTCGGTTGTAGTGGAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
* * * * * *
45887619 TGAAGACAACAGATCTTGCCTTCTTGAATCGACATCGAAAC-GAATCGAAGACACAAAACTTGCC
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAG-ATCGAAGACACAAACCTTGCC
*
45887683 TCTCTCGGTTGTAGTGGAGCTGGT
65 TCTCTCGGTTGTAGCGGAGCTGGT
* * * * * *
45887707 TGATGACAACAGATCTTGTCTTCCTGAATCGACAGCGAAGCGGATCGAAGACACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
* * *
45887772 CCCTCGGTTGTAGTGAAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
* *
45887795 TGAAGACAATAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
* *
45887860 GTCTCGGTTGTAGCGGAGTTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
* **
45887883 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAACGAAGCAGATCGAACCCACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
* *
45887948 GTCTCGGTTGTAGCGGAGTTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
*
45887971 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
45888036 CTCTCGGTTGTAGCAGAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
* * * *
45888059 TGAAGACAACAGATCTTGTCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAGAAACCTTACTT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
* *
45888124 CTCTCAGTTGTATCGGAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
* *
45888147 TGAAGACAACAAATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTTCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
45888212 CTCTCGGTTGTAGCGGAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
* * *
45888235 TGAAGACAACAGATCTTGCCTTCCTACATTGACAGTGAAGCAGATCGAAGACACAAACCTTACCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
45888300 CTCTCGGTTGTAGCGGAGCTGAT
66 CTCTCGGTTGTAGCGGAGCTGGT
*
45888323 TGAAGACAACAGATCTTGCTTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
45888388 CTCTCGATTGTAGCGGAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
*
45888411 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGTCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
45888476 CTGTCGGTTGTAGCGGAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
* * * *
45888499 TGAAGACAACAGATCTTGCCTTCCTACATTGATAGCAAAGCAGATCGAAAACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
45888564 CTCTCGGTTGTAGCGGAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
* * *
45888587 TGAAGACAACAAATCTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACATAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
45888652 CTCTCGGTTATAGCGGAGCTGGT
66 CTCTCGGTTGTAGCGGAGCTGGT
* *
45888675 TGAAGACAACAGATCTTGCCTTCCTGCATTAACGGCGAAGCAGATCGAAG
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAG
45888725 TTACAAATCC
Statistics
Matches: 1268, Mismatches: 100, Indels: 4
0.92 0.07 0.00
Matches are distributed among these distances:
87 1 0.00
88 1266 1.00
89 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.24
Consensus pattern (88 bp):
TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
CTCTCGGTTGTAGCGGAGCTGGT
Found at i:45889026 original size:129 final size:128
Alignment explanation
Indices: 45888727--45889129 Score: 637
Period size: 128 Copynumber: 3.1 Consensus size: 128
45888717 GATCGAAGTT
* * *
45888727 ACAAATCCTATCTCCCTGGTCAGTAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCTTAAGT
1 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
* *
45888792 AGTAGCGGAGCAGATCGAAGATGGAAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
66 AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
*
45888855 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTAGAAATTACAGATCTTGTCTCCCTAAGC
1 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
* *
45888920 AGTAACGGAGCAGATCGAAGACGGCAAATCTTATCTTTCAAGAGTAATGAAGCAGATTTAAGCC
66 AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATC-TTCAAGAGTAAGGAAGCAGATTTAAGCC
* * * *
45888984 ACAAGTCCTATTTCCCTGGTCAGCAGTGGAATAAGTTGGAAATTACAGATCTTGTCTCCCTAAGC
1 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
* * *
45889049 AGTAGCAGAGCAGATC-AATGACGACAAATCTTATCTTCAAGAGTAAGGAAGCAAATTTAAGCC
66 AGTAGCGGAGCAGATCGAA-GACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
*
45889112 ACAAATCCTATTTCCCTG
1 ACAAATCCTATCTCCCTG
45889130 AAGTTGCAGT
Statistics
Matches: 254, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
128 138 0.54
129 116 0.46
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (128 bp):
ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
Found at i:45889304 original size:113 final size:113
Alignment explanation
Indices: 45889156--45889360 Score: 340
Period size: 113 Copynumber: 1.8 Consensus size: 113
45889146 AGTTGAAGCT
* * * * *
45889156 ACAAGTCTTATCTCACTGAGGTTGCAGTGTAGCAGACTGAAGATAGTAAATGTTTTC-TCGAAGA
1 ACAAGTCTTATCTCACTAAAGTTGCAGTATAGCAGACTAAAGATAGCAAATG-TTTCATCGAAGA
45889220 GCCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATTACACCATA
65 GCCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATTACACCATA
45889269 ACAAGTCTTATCTCACTAAAGTTGCAGTATAGCAGACTAAAGATAGCAAATGTTTCATCGAAGAG
1 ACAAGTCTTATCTCACTAAAGTTGCAGTATAGCAGACTAAAGATAGCAAATGTTTCATCGAAGAG
*
45889334 CCACAGATCTTATCTTTCTGAAGTTGC
66 CCACAGATCTTATCTCTCTGAAGTTGC
45889361 CATGGAGCAG
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
112 4 0.05
113 81 0.95
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (113 bp):
ACAAGTCTTATCTCACTAAAGTTGCAGTATAGCAGACTAAAGATAGCAAATGTTTCATCGAAGAG
CCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATTACACCATA
Found at i:45890177 original size:19 final size:19
Alignment explanation
Indices: 45890155--45890193 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
45890145 GGGAAAAACC
45890155 GATTCAA-AAAAAATACAAA
1 GATTCAAGAAAAAATA-AAA
*
45890174 GATTCAAGAAGAAATAAAA
1 GATTCAAGAAAAAATAAAA
45890193 G
1 G
45890194 TAACATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.64, C:0.08, G:0.13, T:0.15
Consensus pattern (19 bp):
GATTCAAGAAAAAATAAAA
Found at i:45890249 original size:6 final size:7
Alignment explanation
Indices: 45890232--45890257 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
45890222 TTAATCTTTT
45890232 TTTTTAA
1 TTTTTAA
45890239 TTTTTAA
1 TTTTTAA
45890246 TTTTTAA
1 TTTTTAA
45890253 TTTTT
1 TTTTT
45890258 TTCTGTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAA
Found at i:45890889 original size:3 final size:3
Alignment explanation
Indices: 45890881--45890963 Score: 51
Period size: 3 Copynumber: 26.7 Consensus size: 3
45890871 TCTAATCCAT
*** * * *
45890881 TTA TTA TTA TTA TTA TTA AGC TTA TTA TGA TTA TTA TTC TTG TTA TTGCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A
**
45890931 TTTA TTA TTA TTA CTT- TCC TTA TTA TTA TTA TT
1 -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT
45890964 TATCCACTTA
Statistics
Matches: 61, Mismatches: 14, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
2 1 0.02
3 54 0.89
4 3 0.05
5 1 0.02
6 2 0.03
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:45891243 original size:25 final size:27
Alignment explanation
Indices: 45891192--45891252 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
45891182 AGGCTTTATA
*
45891192 ATTTATATATATACATAGATATGCATAT
1 ATTT-TATATATACATACATATGCATAT
* *
45891220 TTTTTATATGTACATACAT-T-CATAT
1 ATTTTATATATACATACATATGCATAT
45891245 ATTTTATA
1 ATTTTATA
45891253 ATTTATAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 12 0.41
26 1 0.03
27 13 0.45
28 3 0.10
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (27 bp):
ATTTTATATATACATACATATGCATAT
Found at i:45892738 original size:54 final size:55
Alignment explanation
Indices: 45892679--45892854 Score: 173
Period size: 54 Copynumber: 3.3 Consensus size: 55
45892669 TTACTTCTGG
*
45892679 GACTTTACGAATCTCATGGTCT-ATCGATTT-TCGATAACGACCTTCAACTTACGA
1 GACTTTACGAATCTCATGGTCTCATCGATTTAT-GATAACGACCTTCTACTTACGA
* * * * * *
45892733 GACTTTACGAATCTCGTGGTCTGAT-GATTTATGATAATGACCTTTTACTTATGG
1 GACTTTACGAATCTCATGGTCTCATCGATTTATGATAACGACCTTCTACTTACGA
* * * * * *
45892787 GATTTTACGAATGTCACGGT-TCA-CTGATTTGTGATCACGACCTTCTACTTACGT
1 GACTTTACGAATCTCATGGTCTCATC-GATTTATGATAACGACCTTCTACTTACGA
*
45892841 GATTTTACGAATCT
1 GACTTTACGAATCT
45892855 AGGTGTGTTG
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
53 2 0.02
54 95 0.95
55 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38
Consensus pattern (55 bp):
GACTTTACGAATCTCATGGTCTCATCGATTTATGATAACGACCTTCTACTTACGA
Found at i:45893161 original size:451 final size:446
Alignment explanation
Indices: 45892367--45893281 Score: 1129
Period size: 451 Copynumber: 2.0 Consensus size: 446
45892357 TAGTCTAATA
* *
45892367 ATTTACGATCACAACCTTCCAGTTACGTGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
1 ATTTACGATCACGACCTTCCACTTACGTGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
* * * * *
45892432 AACTGACCTTTTTGCCTTTCAGAGCAAGTTAGATGCCAGAGATGATGAATATAAGCGTGTTGAGG
66 AACTGACCTCTTTGCCCTTCAGAGCAAGTGAAATGCCAGAAATGATGAATATAAGCGTGTTGAGG
* *
45892497 AAGAACTGACATTAAAAGGAGAATAAATGAATCAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
131 AAGAACTAACATTAAAAGGAGAATAAAGGAATCAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
* * * * **
45892562 TTAGTTCTATTCACCATGTGTCTGAAATGAGGCTTGAAATAGATCGATTTCCTCACAAAAACAAG
196 CTAGTTCTATACACCATATGTATGAAATGAGGCTTGAAATAGATCGAGCTCCTCACAAAAACAAG
** * *
45892627 GAACTTTTTGAAAAACTTTAGTTGATTTACAATCACAACCTTTTACTTCTGGGACTTTACGAATC
261 GAACTTTTTGAAAAAAATTAGTTGATTTACAATCACAACCTTTTACTTCTGAGACTTTACAAATC
* * * * * ** *
45892692 TCATGGTCTATCGATTTTCGATAACGACCTTCAACTTACGAGACTTTACGAATCTCGTGGTCTGA
326 TCACGGTCGATCGATTTTCAACAACAAAATTCAACTTACGAGACTTTACAAATCTCGTGGTCTGA
* * * * *
45892757 TGATTTATGATAATGA-CCTTTTACTTATGGGATTTTACGAATGTCACGGTTCACTG
391 TGATTTACGATAA-CATCCTTTTACTTATAGGATTTTACGAATCTCACGGTACACTG
** *
45892813 ATTTGTGATCACGACCTTCTACTTACGTGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
1 ATTTACGATCACGACCTTCCACTTACGTGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
* * * *
45892878 AATTGACCTCTTTGCCCTTCAGAGTAAGTGAAATGCTAGAAATGATGAATATAGGCGTGTTGAGG
66 AACTGACCTCTTTGCCCTTCAGAGCAAGTGAAATGCCAGAAATGATGAATATAAGCGTGTTGAGG
* * ** * *
45892943 -AGAACTCAAACTAAACTTGAAAGGAGGATAGCGGTATCAATTTTGTTCTATTGCCATT-GTG-A
131 AAGAACT--AAC---A-TTAAAAGGAGAATAAAGGAATCAATTTTGTTATATTGCC-TTAG-GAA
* * * *
45893005 GGCTGAAGCTAGTTCTCTACACCATATGTATGAAATGAGGCTTGAAATGGATCGAGCTGCTCAGA
188 GGCTGAAGCTAGTTCTATACACCATATGTATGAAATGAGGCTTGAAATAGATCGAGCTCCTCACA
* * *
45893070 AAAATAAGGAACTTTTTGAAAAAAATTAGTTGATTTACAATCACGATCTTTTACTTCTGAGACTT
253 AAAACAAGGAACTTTTTGAAAAAAATTAGTTGATTTACAATCACAACCTTTTACTTCTGAGACTT
* * * * * *
45893135 TATAAATTTCACGGTTCGCT-GATTTTCAACGACAAAATTCTACTTACGAGATTTTACAAATCTC
318 TACAAATCTCACGG-TCGATCGATTTTCAACAACAAAATTCAACTTACGAGACTTTACAAATCTC
* ** **
45893199 GTGGTCTGTTGATTTACGATAACATTTTTTTACTTATAGGATTTTATTAATCTCACGGTACACTG
382 GTGGTCTGATGATTTACGATAACATCCTTTTACTTATAGGATTTTACGAATCTCACGGTACACTG
*
45893264 ATTTACAATCACGACCTT
1 ATTTACGATCACGACCTT
45893282 TTATTTATTA
Statistics
Matches: 393, Mismatches: 66, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
445 6 0.02
446 116 0.30
447 2 0.01
450 2 0.01
451 261 0.66
452 6 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (446 bp):
ATTTACGATCACGACCTTCCACTTACGTGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
AACTGACCTCTTTGCCCTTCAGAGCAAGTGAAATGCCAGAAATGATGAATATAAGCGTGTTGAGG
AAGAACTAACATTAAAAGGAGAATAAAGGAATCAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
CTAGTTCTATACACCATATGTATGAAATGAGGCTTGAAATAGATCGAGCTCCTCACAAAAACAAG
GAACTTTTTGAAAAAAATTAGTTGATTTACAATCACAACCTTTTACTTCTGAGACTTTACAAATC
TCACGGTCGATCGATTTTCAACAACAAAATTCAACTTACGAGACTTTACAAATCTCGTGGTCTGA
TGATTTACGATAACATCCTTTTACTTATAGGATTTTACGAATCTCACGGTACACTG
Found at i:45893284 original size:54 final size:54
Alignment explanation
Indices: 45893226--45893359 Score: 157
Period size: 53 Copynumber: 2.5 Consensus size: 54
45893216 GATAACATTT
*
45893226 TTTTACTTATAGGATTTTATTAATCTCACGGTAC-ACTGATTTACAATCACGACC
1 TTTTACTTATAGGATTTTATGAATCTCACGGT-CTACTGATTTACAATCACGACC
* * *
45893280 TTTTATTTATTA-GA-TTTACGAATCTCACGGTCTATTGATTTACAATCACGACC
1 TTTTACTTA-TAGGATTTTATGAATCTCACGGTCTACTGATTTACAATCACGACC
* * **
45893333 CTCTACTTACGGGATTTTATGAATCTC
1 TTTTACTTATAGGATTTTATGAATCTC
45893360 GTGATCCTCT
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
52 1 0.02
53 42 0.64
54 21 0.32
55 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (54 bp):
TTTTACTTATAGGATTTTATGAATCTCACGGTCTACTGATTTACAATCACGACC
Found at i:45893464 original size:54 final size:53
Alignment explanation
Indices: 45893333--45893466 Score: 164
Period size: 54 Copynumber: 2.5 Consensus size: 53
45893323 AATCACGACC
*
45893333 CTCTACTTACGGGATTTTATGAATCTCGTGATCCTCTAATTTAAGATAACAAA
1 CTCTACTTACGGGATTTTATGAATCTCGTGATCCGCTAATTTAAGATAACAAA
* **
45893386 CTTCTACTTACAGGGATTTT-TGAATCTCGTGATCCGCTAATTTATGATCTCGACAA
1 C-TCTACTTAC-GGGATTTTATGAATCTCGTGATCCGCTAATTTAAGATAAC-A-AA
* *
45893442 -TCTAATTACGTGATTTTATGAATCT
1 CTCTACTTACGGGATTTTATGAATCT
45893467 AAGTGTGTTG
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
53 8 0.11
54 51 0.73
55 9 0.13
56 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (53 bp):
CTCTACTTACGGGATTTTATGAATCTCGTGATCCGCTAATTTAAGATAACAAA
Found at i:45893854 original size:54 final size:54
Alignment explanation
Indices: 45893761--45893916 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
45893751 AATCTCACAG
* * * * * * * *
45893761 TCCACTGATTTTCGATGACGACCTTCTAATTA-TGAGATTTTGCGAATCTCGTGG
1 TCCACTGATTTACGATAACGACCTTTTACTTACAG-GATTTTGCAAATCTCATGA
** * *
45893815 TCTGCTGATTTACGATAACGACCTTTTA-TATACAGGATTTTACTAATCTCATGA
1 TCCACTGATTTACGATAACGACCTTTTACT-TACAGGATTTTGCAAATCTCATGA
*
45893869 TCCACTGATTTATGATAACGACCTTTTACTTACAGGATTTTGCAAATC
1 TCCACTGATTTACGATAACGACCTTTTACTTACAGGATTTTGCAAATC
45893917 CCACAATACG
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
53 1 0.01
54 81 0.96
55 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (54 bp):
TCCACTGATTTACGATAACGACCTTTTACTTACAGGATTTTGCAAATCTCATGA
Found at i:45893934 original size:54 final size:54
Alignment explanation
Indices: 45893822--45893951 Score: 145
Period size: 54 Copynumber: 2.4 Consensus size: 54
45893812 TGGTCTGCTG
* * ** * *
45893822 ATTTACGATAACGACCTTTTATATACAGGATTTTACTAATCTCATGATCCACTG
1 ATTTACGATAACGACCTTTTATATACAGGATTTTACAAATCCCACAATACACTA
* * *
45893876 ATTTATGATAACGACCTTTTACT-TACAGGATTTTGCAAATCCCACAATACGCTA
1 ATTTACGATAACGACCTTTTA-TATACAGGATTTTACAAATCCCACAATACACTA
* *
45893930 ATTTACGATCACAACCTTTTAT
1 ATTTACGATAACGACCTTTTAT
45893952 TTATAGGGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.02
54 61 0.97
55 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.10, T:0.36
Consensus pattern (54 bp):
ATTTACGATAACGACCTTTTATATACAGGATTTTACAAATCCCACAATACACTA
Found at i:45894025 original size:54 final size:55
Alignment explanation
Indices: 45893981--45894110 Score: 174
Period size: 54 Copynumber: 2.4 Consensus size: 55
45893971 TTGCAGTCCG
* * * *
45893981 CTGATTTATGATCAAGACCTTCCT-TTTACAAGATCTTACGAATCTCGTGGTCTA
1 CTGATTTAAGATCACGACCTTCCTATTTACAAGATATTACGAATCTCGCGGTCTA
* * * *
45894035 CTAATTTACGATCACGA-CTTCCTATTTACAGGATATTATGAATCTCGCGGTCTA
1 CTGATTTAAGATCACGACCTTCCTATTTACAAGATATTACGAATCTCGCGGTCTA
45894089 CTGATTTAAGATCACGACCTTC
1 CTGATTTAAGATCACGACCTTC
45894111 TACTTACGTC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
53 6 0.09
54 55 0.85
55 4 0.06
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (55 bp):
CTGATTTAAGATCACGACCTTCCTATTTACAAGATATTACGAATCTCGCGGTCTA
Found at i:45894132 original size:54 final size:54
Alignment explanation
Indices: 45894016--45894133 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 54
45894006 TTACAAGATC
* * * *
45894016 TTACGAATCTCGTGGTCTACTAATTTACGATCACGACTTCCTATTTACAGGATA
1 TTACGAATCTCGCGGTCTACTAATTTAAGATCACGACTTCCTACTTACAGCATA
* * *
45894070 TTATGAATCTCGCGGTCTACTGATTTAAGATCACGACCTT-CTACTTAC-GTCATT
1 TTACGAATCTCGCGGTCTACTAATTTAAGATCACGA-CTTCCTACTTACAG-CATA
45894124 TTACGAATCT
1 TTACGAATCT
45894134 AGGTGTGTTA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
53 1 0.02
54 50 0.93
55 3 0.06
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (54 bp):
TTACGAATCTCGCGGTCTACTAATTTAAGATCACGACTTCCTACTTACAGCATA
Found at i:45894860 original size:54 final size:53
Alignment explanation
Indices: 45894793--45894967 Score: 181
Period size: 54 Copynumber: 3.3 Consensus size: 53
45894783 TTGCTTTTTG
* * *
45894793 GATTTTACGAATCTTACGGTCCATTAATTTACGATCATGACCTTCTACTTATGA
1 GATTTTACAAATCTCACGGTCCGTTAATTTACGATCA-GACCTTCTACTTATGA
* * * * * *
45894847 GATTTTACAAATCTCGCAGTCCGTTGATTTACAATC-GCACCTTCTACCTACGA
1 GATTTTACAAATCTCACGGTCCGTTAATTTACGATCAG-ACCTTCTACTTATGA
* * * * * *
45894900 GATTTTACGAATCTCACGGTCCGCTAATTTACGGTTACGACCTTTTACTTATGT
1 GATTTTACAAATCTCACGGTCCGTTAATTTACGATCA-GACCTTCTACTTATGA
45894954 GATTTTACAAATCT
1 GATTTTACAAATCT
45894968 AGATGTGTTG
Statistics
Matches: 96, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
52 1 0.01
53 41 0.43
54 53 0.55
55 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (53 bp):
GATTTTACAAATCTCACGGTCCGTTAATTTACGATCAGACCTTCTACTTATGA
Found at i:45894922 original size:53 final size:53
Alignment explanation
Indices: 45894793--45894931 Score: 163
Period size: 53 Copynumber: 2.6 Consensus size: 53
45894783 TTGCTTTTTG
* * * * *
45894793 GATTTTACGAATCTTACGGTCCATTAATTTACGATCATGACCTTCTACTTATGA
1 GATTTTACGAATCTCACGGTCCGTTAATTTACAATCA-GACCTTCTACCTACGA
* * * *
45894847 GATTTTACAAATCTCGCAGTCCGTTGATTTACAATC-GCACCTTCTACCTACGA
1 GATTTTACGAATCTCACGGTCCGTTAATTTACAATCAG-ACCTTCTACCTACGA
*
45894900 GATTTTACGAATCTCACGGTCCGCTAATTTAC
1 GATTTTACGAATCTCACGGTCCGTTAATTTAC
45894932 GGTTACGACC
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
52 1 0.01
53 40 0.57
54 29 0.41
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (53 bp):
GATTTTACGAATCTCACGGTCCGTTAATTTACAATCAGACCTTCTACCTACGA
Found at i:45894958 original size:380 final size:378
Alignment explanation
Indices: 45894200--45894996 Score: 863
Period size: 380 Copynumber: 2.1 Consensus size: 378
45894190 GCTAGAGATG
* * * * * * *
45894200 ATGAATGTAGACGTGTTGAGGAAGAACTTAAAACTGACCTTTAAATAAGGAGGATAGAGGAATCA
1 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
* * * * *
45894265 ATTTTGTTATATTGCCTTTGTGAAGCTGAAGCTAGTTCTCTTACCATACGTCTGAAATGAGGCTT
66 ATTTTGTTACATTGCCTCTGTGAAGCTGAAGCTAGTTCTCTCACCACACATCTGAAATGAGGCTT
* ** * * *
45894330 AAAATATATCAATCTGCTTAGACAAACAAGAAACTTTTTGAAAAGCTTCAGTTGATTTACAATCA
131 AAAATATATAAATCAACTCAGAAAAACAAGAAACTTTTTAAAAAGCTTCAGTTGATTTACAATCA
* * * *
45894395 TGACTTTTTACTTACATGATTTTATGAATCTCACGATCTACAAATTTACGATGAGAACCTTCTAC
196 CGACTTTTTACTTACATGATTTTACGAATCTCACGATCCACAAATTTACGATCAGAACCTTCTAC
* * *
45894460 TTATGGGATTTTACAAATCTCATGATCCGCTGATTTACTATAATGACTTTCTACTAACGGGACTT
261 TTATGAGATTTTACAAATCTCATGATCCGCTGATTTAC--TAATGACCTTCTACTAACGAGACTT
* * * * *
45894525 TATGAATATCACAGTCTGTTGATTTACAATCATGACCTTCTACTTACGTGATTTT
324 TACGAATATCACAGTCCGCTAATTTACAATCACGACCTTCTACTTACGTGATTTT
45894580 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
1 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
* * * *
45894645 ATTTTGTTACATTGCCTCTGTGAGGCTGAAGCTAGTTCTCATCATCACACATTTTAAATGAGGCT
66 ATTTTGTTACATTGCCTCTGTGAAGCTGAAGCTAGTTCTC-TCACCACACATCTGAAATGAGGCT
* * * * * *
45894710 TCAAAT-TGA-AAGATCAACTCAGAAAAATAAGGAATTTTTTAAAAAGTTTTAGTTGATTTACAA
130 TAAAATAT-ATAA-ATCAACTCAGAAAAACAAGAAACTTTTTAAAAAGCTTCAGTTGATTTACAA
* * * ** * * **
45894773 TCGCGATTTTTTGCTT-TTTGGATTTTACGAATCTTACGGTCCATTAATTTACGATCATG-ACCT
193 TCACGACTTTTTACTTACAT-GATTTTACGAATCTCACGATCCACAAATTTACGATCA-GAACCT
*
45894836 TCTACTTATGAGATTTTACAAATCTC--GCAGTCCGTTGATTTAC-AATCGCACCTTCTACCT-A
256 TCTACTTATGAGATTTTACAAATCTCATG-A-TCCGCTGATTTACTAAT-G-ACCTTCTA-CTAA
* * * ** * * *
45894897 CGAGATTTTACGAATCTCACGGTCCGCTAATTTACGGTTACGACCTTTTACTTATGTGATTTT
316 CGAGACTTTACGAATATCACAGTCCGCTAATTTACAATCACGACCTTCTACTTACGTGATTTT
** * * *
45894960 ACAAATCTAGATGTGTTGAGAAATAGCTCAAAACTGA
1 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGA
45894997 TATCTTTTTC
Statistics
Matches: 344, Mismatches: 63, Indels: 20
0.81 0.15 0.05
Matches are distributed among these distances:
378 3 0.01
379 2 0.01
380 188 0.55
381 150 0.44
382 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (378 bp):
ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
ATTTTGTTACATTGCCTCTGTGAAGCTGAAGCTAGTTCTCTCACCACACATCTGAAATGAGGCTT
AAAATATATAAATCAACTCAGAAAAACAAGAAACTTTTTAAAAAGCTTCAGTTGATTTACAATCA
CGACTTTTTACTTACATGATTTTACGAATCTCACGATCCACAAATTTACGATCAGAACCTTCTAC
TTATGAGATTTTACAAATCTCATGATCCGCTGATTTACTAATGACCTTCTACTAACGAGACTTTA
CGAATATCACAGTCCGCTAATTTACAATCACGACCTTCTACTTACGTGATTTT
Found at i:45895312 original size:54 final size:54
Alignment explanation
Indices: 45895215--45895471 Score: 185
Period size: 54 Copynumber: 4.8 Consensus size: 54
45895205 AAACATCAAT
* * * ** * *
45895215 TGATTTACAATCACGACCTTTTACTT-CTGAGACATTACGAATCTCACGGTCCGT
1 TGATTTACTATAACGACCTTCTACTTAC-GAGATTTTACGAATCTCACGGTCTGC
* * * * *
45895269 TGATTTTCTATGACGACCTTCTACTTACGAGATTTTACAAATCTCATGGTCTAC
1 TGATTTACTATAACGACCTTCTACTTACGAGATTTTACGAATCTCACGGTCTGC
* * * * * *
45895323 TGATTTACAATAACGACCTTTTAATTATGAGATTTTATGAACCTCACGGTCTGC
1 TGATTTACTATAACGACCTTCTACTTACGAGATTTTACGAATCTCACGGTCTGC
* * ** * * * *** *
45895377 TGATTTACTATCATGACCTTCTACAAATGGGATTTTTCGAATCTTGTGGTCTAC
1 TGATTTACTATAACGACCTTCTACTTACGAGATTTTACGAATCTCACGGTCTGC
* * * *
45895431 TGATTTACGATCACAACCTTCTCCTTAC-ATGATTTTACGAA
1 TGATTTACTATAACGACCTTCTACTTACGA-GATTTTACGAA
45895472 AGTAGGCGTG
Statistics
Matches: 155, Mismatches: 46, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
54 154 0.99
55 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (54 bp):
TGATTTACTATAACGACCTTCTACTTACGAGATTTTACGAATCTCACGGTCTGC
Found at i:45895450 original size:108 final size:108
Alignment explanation
Indices: 45895215--45895450 Score: 274
Period size: 108 Copynumber: 2.2 Consensus size: 108
45895205 AAACATCAAT
* * * * *
45895215 TGATTTACAATCACGACCTTTTACTTCTGAGACATTACGAATCTCACGGTCCGTTGATTTTCTAT
1 TGATTTACAATCACGACCTTTTAATTATGAGACATTACGAACCTCACGGTCCGCTGATTTACTAT
* **
45895280 GACGACCTTCTACTTACGAGATTTTACAAATCTCATGGTCTAC
66 CACGACCTTCTACAAACGAGATTTTACAAATCTCATGGTCTAC
* ** * *
45895323 TGATTTACAATAACGACCTTTTAATTATGAGATTTTATGAACCTCACGGTCTGCTGATTTACTAT
1 TGATTTACAATCACGACCTTTTAATTATGAGACATTACGAACCTCACGGTCCGCTGATTTACTAT
* * * * * **
45895388 CATGACCTTCTACAAATGGGATTTTTCGAATCTTGTGGTCTAC
66 CACGACCTTCTACAAACGAGATTTTACAAATCTCATGGTCTAC
* *
45895431 TGATTTACGATCACAACCTT
1 TGATTTACAATCACGACCTT
45895451 CTCCTTACAT
Statistics
Matches: 105, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
108 105 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (108 bp):
TGATTTACAATCACGACCTTTTAATTATGAGACATTACGAACCTCACGGTCCGCTGATTTACTAT
CACGACCTTCTACAAACGAGATTTTACAAATCTCATGGTCTAC
Found at i:45896415 original size:54 final size:54
Alignment explanation
Indices: 45896312--45896433 Score: 147
Period size: 54 Copynumber: 2.3 Consensus size: 54
45896302 CTAAATATGA
* ** * *
45896312 GATTTTACGAACCTCGTGGTCTGTTGATTTACGATAATGACATTTTACTTACGG
1 GATTTTACGAATCTCGTGGTCTAATGATTTACGATAATGACATTCTACTTACAG
* * *
45896366 GATTTTACGAATCTCTTGGTCTAATGATTTACGATCATGACCA-TCTACTTATAG
1 GATTTTACGAATCTCGTGGTCTAATGATTTACGATAATGA-CATTCTACTTACAG
*
45896420 GATTTTATGAATCT
1 GATTTTACGAATCT
45896434 TCTGTTCCGT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 56 0.97
55 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.40
Consensus pattern (54 bp):
GATTTTACGAATCTCGTGGTCTAATGATTTACGATAATGACATTCTACTTACAG
Found at i:45896835 original size:54 final size:53
Alignment explanation
Indices: 45896748--45896952 Score: 160
Period size: 54 Copynumber: 3.8 Consensus size: 53
45896738 TTTTTTTATA
* * * *
45896748 ATCATGACCTTTTACTTTCTAGATTTTACGAATCTCACGGTCCACTGATTTACG
1 ATCATGACCTTCTACTTACGAGATTTTATGAATCTCACGGTCCA-TGATTTACG
* * * * ** * **
45896802 ATCACGACCTTCTAGTTACGAGATTTTATGAATCTCTCGATTTGATAATTTTAAA
1 ATCATGACCTTCTACTTACGAGATTTTATGAATCTCACG-GTCCATGA-TTTACG
* * * * *
45896857 ATCATGATCTTCTACTAACGGGATTTT-TCAAATCTCACAGTCCATTGATTTACG
1 ATCATGACCTTCTACTTACGAGATTTTAT-GAATCTCACGGTCCA-TGATTTACG
* * * *
45896911 ATCATGACCTTCTACCTATGGGATTTTATGAATCTCATGGTC
1 ATCATGACCTTCTACTTACGAGATTTTATGAATCTCACGGTC
45896953 TGCTAATTTA
Statistics
Matches: 112, Mismatches: 34, Indels: 10
0.72 0.22 0.06
Matches are distributed among these distances:
54 74 0.66
55 38 0.34
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (53 bp):
ATCATGACCTTCTACTTACGAGATTTTATGAATCTCACGGTCCATGATTTACG
Found at i:45897537 original size:506 final size:506
Alignment explanation
Indices: 45894819--45898442 Score: 3314
Period size: 507 Copynumber: 7.1 Consensus size: 506
45894809 CGGTCCATTA
* * * * * * * ** *
45894819 ATTTACGATCATGACCTTCTACTTATGAGATTTTACAAATCTCGCAGTCCGTTGATTTACAATC-
1 ATTTACGATAACGACCTTTTACTTACGAGATTTTACGAATCTCACGGTCCACTGATTTACGATCA
* * * * * * * * * *
45894883 -GCACCTTCTACCTA-CGAGATTTTACGAATC-TCACGGTCCGCTAATTTACGGTTACGACCTTT
66 TG-ACCTTCTACCTATAG-GATTTTATGAATCTTC-TGGTCTGTTGATTTACGATCACAACCTTC
* *** * * ** **
45894945 TACTTA-TGTGATTTTACAAATCTAGATGTGTTGAGAAATAGCTCAAAACTGATATCTTTTTCCT
128 TACTTACT-TGATTTTACGAATCTAGGCATGTTGAGGAATAACTCAAAACTGACCTCTTTACCCT
* * * * *
45895009 TTAGAGCAAGATAGATGCTAAAGATGATGAATATAGGTGTGCTGAGGAAGAACTCAAAACTGACC
192 TCAGAGCAAGCTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACC
* * * **
45895074 TTGAAAGGAGGATAGAGGTATTAATTTTATTATATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTT
257 TTGAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTGTGAGGCTGAAGCTAGTTCTCAA
* * * * *
45895139 CACCGTACGTTTGAAATGAGGCTTGAAATGGATCAATCTGTTCATAAGAACAAGGAACTTTCTGA
322 CACCATACATTTGAAATGAGGCTTGAAATGGATCGATCTGTTCAAAAAAACAAGGAACTTTCTGA
** * * * *** *
45895204 AAAACATCAATTGATTTACAATCACGACCTTTTACTTCTGAGACATTACGAATCTCACGGTCCGT
387 AAAATTTTAGTTGATTTACAATCATGACCTTTTACTTCT-AGGTTTTACGAATCTCACGGTCCGC
* * *
45895269 TGATTTTCT-ATGACGACCTTCTACTTACGAGATTTTACAAATCTCATGGTCTACTG
451 TGATTTT-TGATGACGACCTTCTACTTACGAGATTTTACGAATCTCGTGGTCTGCTG
* * * * * ** *
45895325 ATTTACAATAACGACCTTTTAATTATGAGATTTTATGAACCTCACGGTCTGCTGATTTACTATCA
1 ATTTACGATAACGACCTTTTACTTACGAGATTTTACGAATCTCACGGTCCACTGATTTACGATCA
** * * ** *
45895390 TGACCTTCTACAAATGGGATTTT-TCGAATCTTGTGGTCTACTGATTTACGATCACAACCTTCTC
66 TGACCTTCTACCTATAGGATTTTAT-GAATCTTCTGGTCTGTTGATTTACGATCACAACCTTCTA
* ** * * *
45895454 CTTACATGATTTTACGAAAGTAGGCGTGTTGAAGAATAACTCAAAACTGACAT-TTCTACCCTTC
130 CTTACTTGATTTTACGAATCTAGGCATGTTGAGGAATAACTCAAAACTGACCTCTT-TACCCTTC
* * * * * *
45895518 AAAGCAAGTTAGAAGATAGAGATGATGAATATAGGCGTGTTTAGGAAGAACTCAAAAGTGACCTT
194 AGAGCAAGCTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTT
* * * * ** *
45895583 GAAAGAAGGAGGATAAATGAATCAATTTTGTTAGATTTTCTTTGTGAAGCTGAAGCTAGTTCTCA
259 G--A-AAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTGTGAGGCTGAAGCTAGTTCTCA
* * * * * ** * * * *
45895648 AAACGATACATTTGAAATGAGGTTTGTAATGGATCGATTTACTCAGAAAAACAATGAAATTTCTT
321 ACACCATACATTTGAAATGAGGCTTGAAATGGATCGATCTGTTCAAAAAAACAAGGAACTTTCTG
* * * * * * *
45895713 TAAAGTTTCAATTGATTTACAATCATGACCTTTTACTTTCTAGATTTTACGAATATCACGGTCTG
386 AAAAATTTTAGTTGATTTACAATCATGACCTTTTAC-TTCTAGGTTTTACGAATCTCACGGTCCG
* * * * * * **
45895778 CTGAATTATGATCACGACCTTCTACTTACGAGATTTTACGAATCTAGTGATTTGCCA
450 CTGATTTTTGATGACGACCTTCTACTTACGAGATTTTACGAATCTCGTGGTCTGCTG
* * * * * * * * * * * *
45895835 ATTTTAAGATCATGATCTTCTACTAATGGGATTTTAC-AAGCCTCGCGGTCCATTGATTTATGAT
1 A-TTTACGATAACGACCTTTTACTTACGAGATTTTACGAA-TCTCACGGTCCACTGATTTACGAT
* *
45895899 CATGA-C--CTACCTACT-GGATTTTATGAATCTTATGGTCTGCTT-ATTTACGATCACGACCTT
64 CATGACCTTCTACCTA-TAGGATTTTATGAATCTTCTGGTCTG-TTGATTTACGATCACAACCTT
* * *
45895959 CTACTTA-TATGCTTTTATGAATCTAGGCATGTTGAGGAATAACTCAAAACTGACCTCTTTGCCC
127 CTACTTACT-TGATTTTACGAATCTAGGCATGTTGAGGAATAACTCAAAACTGACCTCTTTACCC
* * * *
45896023 TTCAGAGCAAGCTAGATGCTAGAGATGATGAATATAGGCATGTTGAGAAAGAACTC-AAACTAAA
191 TTCAGAGCAAGCTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGAAGAACTCAAAACTGAC
** * * * *
45896087 CTTGAAAAAAGGATAGAGGTATCAATTTTGTTATATTACCTTTGTAAGGCAGAAGCTAGTTCTCT
256 CTTGAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTGTGAGGCTGAAGCTAGTTCTCA
* * * * * * * *
45896152 TCACCAAACGTCTGAAATGAGGCTTGAAATGCATCAATCTGCT-AAAAAAACAAGGAACTTTCTA
321 ACACCATACATTTGAAATGAGGCTTGAAATGGATCGATCTGTTCAAAAAAACAAGGAACTTTCTG
* * * * **
45896216 AAAAACTTTAGTTGATTTACAGTCATGACCTTTTACTTCCAGGTTTTTACGAATCTCATGGTCTA
386 AAAAATTTTAGTTGATTTACAATCATGACCTTTTACTTCTAGG-TTTTACGAATCTCACGGTCCG
* * ** * * *
45896281 CTGATTTTTTATGACAACCTTCTAAATATGAGATTTTACGAACCTCGTGGTCTGTTG
450 CTGATTTTTGATGACGACCTTCTACTTACGAGATTTTACGAATCTCGTGGTCTGCTG
* * * ** * *
45896338 ATTTACGATAATGACATTTTACTTACGGGATTTTACGAATCTCTTGGTCTAATGATTTACGATCA
1 ATTTACGATAACGACCTTTTACTTACGAGATTTTACGAATCTCACGGTCCACTGATTTACGATCA
* * * * * * * ** *
45896403 TGACCATCTACTTATAGGATTTTATGAATCTTCTGTTCCGTTTATTTACAACCATGACCTTCAAC
66 TGACCTTCTACCTATAGGATTTTATGAATCTTCTGGTCTGTTGATTTACGATCACAACCTTCTAC
* * *
45896468 TTACTTGATTTTACGAATCTAGGCATGTTGAGGACTAACTCAAAATTGACCT-TTCTACCCTTTA
131 TTACTTGATTTTACGAATCTAGGCATGTTGAGGAATAACTCAAAACTGACCTCTT-TACCCTTCA
* * * * * *
45896532 GAGCAAGTTAGAAGCTAGAGATGATGAATATAGACATGCTGAGGAAGAACTCAAAATTGACCTTG
195 GAGCAAGCTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTG
* * ** * *
45896597 AAAGAAGGAGGATAGAGGAATCAATTTTGTTACATTTTCTTTGTGAGGCTGGAGCTAGTTTTCAA
260 --A-AAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTGTGAGGCTGAAGCTAGTTCTCAA
* ** ** *
45896662 CACCATACATTTGAAATGAGGCTTCAAATGGATCGATCTACTCAAAAAAACAAGGAACTTAATTA
322 CACCATACATTTGAAATGAGGCTTGAAATGGATCGATCTGTTCAAAAAAACAAGGAACTTTCTGA
* ** * * *
45896727 AAAGTTTTAGTTTTTTTTATAATCATGACCTTTTACTTTCTAGATTTTACGAATCTCACGGTCCA
387 AAAATTTTAG-TTGATTTACAATCATGACCTTTTAC-TTCTAGGTTTTACGAATCTCACGGTCCG
** * * * * * * *
45896792 CTGATTTACGATCACGACCTTCTAGTTACGAGATTTTATGAATCTC-TCGATTTGATA
450 CTGATTTTTGATGACGACCTTCTACTTACGAGATTTTACGAATCTCGT-GGTCTGCTG
** * * * * * * * * * *
45896849 ATTTTAAAATCATGATCTTCTACTAACGGGATTTTTCAAATCTCACAGTCCATTGATTTACGATC
1 A-TTTACGATAACGACCTTTTACTTACGAGATTTTACGAATCTCACGGTCCACTGATTTACGATC
* * * * *
45896914 ATGACCTTCTACCTATGGGATTTTATGAATC-TCATGGTCTGCTAATTTACGACCGCAACCTTCT
65 ATGACCTTCTACCTATAGGATTTTATGAATCTTC-TGGTCTGTTGATTTACGATCACAACCTTCT
** *
45896978 ACTTA-TGTTCTTTTACGAATCTAGGCATGTTGAGGAATAACTCAAAACTGACCTCTTTGCCCTT
129 ACTTACT-TGATTTTACGAATCTAGGCATGTTGAGGAATAACTCAAAACTGACCTCTTTACCCTT
* * * * *
45897042 TAGAGCAAGCTAGATGCTAAAGATGATGACTATAAGCGTGTTGAGGAAGAACTC-AAACTAACCT
193 CAGAGCAAGCTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCT
* * * * **
45897106 TGAAAGGAGGATAGGGGTATCAATTTTTTTATATTGCCTTTGTAATGCTGAAGCTAGTTCTCTTC
258 TGAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTGTGAGGCTGAAGCTAGTTCTCAAC
* * * * * * * * * *
45897171 GCGAAACGTCTGAAATGAGGCTTGAAATGCATCGATCTGTTCAGAAAAATAAGGAACTGTATGAA
323 ACCATACATTTGAAATGAGGCTTGAAATGGATCGATCTGTTCAAAAAAACAAGGAACTTTCTGAA
* * ** *
45897236 AAATTTTAGTTAATTTACAATCATGACCTTTTACTTCTGGGTCTTTACGAATCTCATTGTCTGCT
388 AAATTTTAGTTGATTTACAATCATGACCTTTTACTTCTAGGT-TTTACGAATCTCACGGTCCGCT
* * ** * * *
45897301 GATTTTTTATGACAACCTTCTAAATATGAGATTTTACAAATCTCGTGGTCTGTTG
452 GATTTTTGATGACGACCTTCTACTTACGAGATTTTACGAATCTCGTGGTCTGCTG
* *
45897356 ATTTACGATAACAACCTTTTACTTACGAGATTTTACGAATCTCCCGGTCCACTGATTTACGATCA
1 ATTTACGATAACGACCTTTTACTTACGAGATTTTACGAATCTCACGGTCCACTGATTTACGATCA
* * * * ** * * * * *
45897421 CGACCATCTACTTATAGGATTTTACGAATCTTCTATTCCGTTGATTTACAATCACGACCCTCAAC
66 TGACCTTCTACCTATAGGATTTTATGAATCTTCTGGTCTGTTGATTTACGATCACAACCTTCTAC
45897486 TTACTTGATTTTACGAATCTAGGCATGTTGAGGAATAACTCAAAACTGACCT-TTCTACCCTTCA
131 TTACTTGATTTTACGAATCTAGGCATGTTGAGGAATAACTCAAAACTGACCTCTT-TACCCTTCA
* * * * * * *
45897550 GAGCAAGTTAGAAGCTAGAGATGATGGATATAGGTGTGTTGAGGAAGAACTCAAAATTGACATTA
195 GAGCAAGCTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTG
* * *
45897615 AAAGGAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTGAGGCT-AGAGCTAGTTCTCAACA
260 AAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTGTGAGGCTGA-AGCTAGTTCTCAACA
* * * * * * * *
45897679 CCATATATTTGAAATGAGGTTTGTAATGGATAGATCTGTTCAGAAAAACAAAGAAATTTCTTAAA
324 CCATACATTTGAAATGAGGCTTGAAATGGATCGATCTGTTCAAAAAAACAAGGAACTTTCTGAAA
* * * * * * *
45897744 AGTTTCAATTGATTTACAATCATGAACTTTTA-TTTTTGGATTTTACGAATCTCACAGTCCGCTG
389 AATTTTAGTTGATTTACAATCATGACCTTTTACTTCTAGG-TTTTACGAATCTCACGGTCCGCTG
* * * * * * *
45897808 ATTTATGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGCGATTTGCTA
453 ATTTTTGATGACGACCTTCTACTTACGAGATTTTACGAATCTCGTGGTCTGCTG
* * * * * * * *
45897862 ATTTTAAGATCACGATCTTCTACTAACGAGATTTTACAAATCTCGCGGTTCC-CTAATTTACGAT
1 A-TTTACGATAACGACCTTTTACTTACGAGATTTTACGAATCTCACGG-TCCACTGATTTACGAT
* * * * * * *
45897926 CATGACCTTCTACCCATAGGATTTTATGAACCTTGC-GGTCTATTTATTTACGATGACAACTTTT
64 CATGACCTTCTACCTATAGGATTTTATGAATCTT-CTGGTCTGTTGATTTACGATCACAACCTTC
* * * * *
45897990 TACTTACGTGCTTTTATGAATCTAGGCGTGTTGAGGAATAACTCAAAACTGACCTCTTTGCCCTT
128 TACTTACTTGATTTTACGAATCTAGGCATGTTGAGGAATAACTCAAAACTGACCTCTTTACCCTT
* * * * * *
45898055 CAGAGAAAACT-GATTGCTAGAGATGATGAATATAAGTGTGTTGAGGAAGAACTC-AAACTAAGC
193 CAGAGCAAGCTAGA-TGCTAGAGATGATGAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACC
* ** *
45898118 TTGAAAGAAGGATAGAGGTATCAATTTTGTTATATTGCCTTTGTGAGTATGAAACTAGTTCTCAA
257 TTGAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTGTGAGGCTGAAGCTAGTTCTCAA
* * * * * * * *
45898183 CACCATACATATGAAATGAGACTTAAAATGAATCGAACTACTT-AAAAAAATAAGGAACTTTGTG
322 CACCATACATTTGAAATGAGGCTTGAAATGGATCGATCT-GTTCAAAAAAACAAGGAACTTTCTG
* * * * * * * * *
45898247 AAAAA-TTTAGTTGATTTACGATCACGACATTTTATTTCCAGGACTATACGAATTTCATGGTCCG
386 AAAAATTTTAGTTGATTTACAATCATGACCTTTTACTTCTAGG-TTTTACGAATCTCACGGTCCG
* * * *
45898311 TTGATTTTTAATGACGACCTTCTACTTACGAGATTTTACGAATCTCATGGTCTACTG
450 CTGATTTTTGATGACGACCTTCTACTTACGAGATTTTACGAATCTCGTGGTCTGCTG
** * * * ** *
45898368 ATTGCCGATAACAACCTTTTACTTACGAGATTTTATGAATCTCATGGTCTGCTGATTTTCGATCA
1 ATTTACGATAACGACCTTTTACTTACGAGATTTTACGAATCTCACGGTCCACTGATTTACGATCA
45898433 TGACCTTCTA
66 TGACCTTCTA
45898443 TTTATGTGAT
Statistics
Matches: 2495, Mismatches: 566, Indels: 115
0.79 0.18 0.04
Matches are distributed among these distances:
502 56 0.02
503 111 0.04
504 86 0.03
505 227 0.09
506 511 0.20
507 575 0.23
508 261 0.10
509 92 0.04
510 224 0.09
511 147 0.06
512 203 0.08
513 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (506 bp):
ATTTACGATAACGACCTTTTACTTACGAGATTTTACGAATCTCACGGTCCACTGATTTACGATCA
TGACCTTCTACCTATAGGATTTTATGAATCTTCTGGTCTGTTGATTTACGATCACAACCTTCTAC
TTACTTGATTTTACGAATCTAGGCATGTTGAGGAATAACTCAAAACTGACCTCTTTACCCTTCAG
AGCAAGCTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTGA
AAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTGTGAGGCTGAAGCTAGTTCTCAACACC
ATACATTTGAAATGAGGCTTGAAATGGATCGATCTGTTCAAAAAAACAAGGAACTTTCTGAAAAA
TTTTAGTTGATTTACAATCATGACCTTTTACTTCTAGGTTTTACGAATCTCACGGTCCGCTGATT
TTTGATGACGACCTTCTACTTACGAGATTTTACGAATCTCGTGGTCTGCTG
Found at i:45897848 original size:54 final size:54
Alignment explanation
Indices: 45897782--45897938 Score: 165
Period size: 55 Copynumber: 2.9 Consensus size: 54
45897772 TTTATTTTTG
* * * *
45897782 GATTTTACGAATCTCAC-AGTCCGCTGATTTATGATCACGACCTTCTACTTACGA
1 GATTTTACGAATCTCGCGA-TCCGCTAATTTAAGATCACGACCTTCTACTAACGA
* ** *
45897836 GATTTTATGAATCTCGCGATTTGCTAATTTTAAGATCACGATCTTCTACTAACGA
1 GATTTTACGAATCTCGCGATCCGCTAA-TTTAAGATCACGACCTTCTACTAACGA
* * * *
45897891 GATTTTACAAATCTCGCGGTTCC-CTAATTTACGATCATGACCTTCTAC
1 GATTTTACGAATCTCGC-GATCCGCTAATTTAAGATCACGACCTTCTAC
45897939 CCATAGGATT
Statistics
Matches: 84, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
54 38 0.45
55 44 0.52
56 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.36
Consensus pattern (54 bp):
GATTTTACGAATCTCGCGATCCGCTAATTTAAGATCACGACCTTCTACTAACGA
Found at i:45898351 original size:54 final size:54
Alignment explanation
Indices: 45898293--45898427 Score: 162
Period size: 54 Copynumber: 2.5 Consensus size: 54
45898283 TCCAGGACTA
* * * * * *
45898293 TACGAATTTCATGGTCCGTTGATTTTTAATGACGACCTTCTACTTACGAGATTT
1 TACGAATCTCATGGTCTGCTGATTTTCAATAACAACCTTCTACTTACGAGATTT
* ** * *
45898347 TACGAATCTCATGGTCTACTGATTGCCGATAACAACCTTTTACTTACGAGATTT
1 TACGAATCTCATGGTCTGCTGATTTTCAATAACAACCTTCTACTTACGAGATTT
*
45898401 TATGAATCTCATGGTCTGCTGATTTTC
1 TACGAATCTCATGGTCTGCTGATTTTC
45898428 GATCATGACC
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.39
Consensus pattern (54 bp):
TACGAATCTCATGGTCTGCTGATTTTCAATAACAACCTTCTACTTACGAGATTT
Found at i:45898454 original size:54 final size:54
Alignment explanation
Indices: 45898324--45898442 Score: 166
Period size: 54 Copynumber: 2.2 Consensus size: 54
45898314 ATTTTTAATG
*
45898324 ACGACCTTCTACTTACGAGATTTTACGAATCTCATGGTCTACTGATTGCCGATA
1 ACGACCTTCTACTTACGAGATTTTATGAATCTCATGGTCTACTGATTGCCGATA
* * * ** *
45898378 ACAACCTTTTACTTACGAGATTTTATGAATCTCATGGTCTGCTGATTTTCGATC
1 ACGACCTTCTACTTACGAGATTTTATGAATCTCATGGTCTACTGATTGCCGATA
*
45898432 ATGACCTTCTA
1 ACGACCTTCTA
45898443 TTTATGTGAT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (54 bp):
ACGACCTTCTACTTACGAGATTTTATGAATCTCATGGTCTACTGATTGCCGATA
Found at i:45898600 original size:54 final size:54
Alignment explanation
Indices: 45898458--45898600 Score: 171
Period size: 54 Copynumber: 2.6 Consensus size: 54
45898448 GTGATTTATG
*
45898458 ATCACAACCTTCTACTTACGGGATTTTATGAATCTCGCAATCTACTAATTTAAA
1 ATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATCTACTAATTTAAA
* ** * * **
45898512 ATAATGACCTTCTACTTACGGGGA-TTTACAAATCTCGCAATCTGCTAATTTGCA
1 ATCACAACCTTCTACTTAC-GGGATTTTACGAATCTCGCAATCTACTAATTTAAA
* * *
45898566 ATCACAACCTTCTAATTACGTGATTTTGCGAATCT
1 ATCACAACCTTCTACTTACGGGATTTTACGAATCT
45898601 AGGAATATTA
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
53 3 0.04
54 65 0.90
55 4 0.06
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (54 bp):
ATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATCTACTAATTTAAA
Found at i:45899097 original size:54 final size:54
Alignment explanation
Indices: 45899039--45899165 Score: 139
Period size: 54 Copynumber: 2.4 Consensus size: 54
45899029 CACGAAATTT
* **
45899039 TGATTTATGATCACGACCTTATACATATGGGGAT-ATACGAATCTCACGGTCTAC
1 TGATTTACGATCACGACCTTATACATA-CAGGATCATACGAATCTCACGGTCTAC
** * *** *
45899093 TGATTTACGATCAATACCTTCTTTTTACAGGATCTTACGAATCTCACGGTCTAC
1 TGATTTACGATCACGACCTTATACATACAGGATCATACGAATCTCACGGTCTAC
*
45899147 TAATTTACGATCACGACCT
1 TGATTTACGATCACGACCT
45899166 CCTATTTACG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
53 4 0.07
54 55 0.93
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (54 bp):
TGATTTACGATCACGACCTTATACATACAGGATCATACGAATCTCACGGTCTAC
Found at i:45899174 original size:54 final size:54
Alignment explanation
Indices: 45899069--45899219 Score: 178
Period size: 54 Copynumber: 2.8 Consensus size: 54
45899059 ATACATATGG
* ** * *
45899069 GGATA-TACGAATCTCACGGTCTACTGATTTACGATCAATACCTTCTTTTTACA
1 GGATATTACGAATCTCACGGTCTACTAATTTACGATCACGACCTCCTATTTACA
* *
45899122 GGATCTTACGAATCTCACGGTCTACTAATTTACGATCACGACCTCCTATTTACG
1 GGATATTACGAATCTCACGGTCTACTAATTTACGATCACGACCTCCTATTTACA
* *** * *
45899176 GGATATTACAAATCTTGTGATCTACTAATTTATGATCACGACCT
1 GGATATTACGAATCTCACGGTCTACTAATTTACGATCACGACCT
45899220 TTTACTTACG
Statistics
Matches: 83, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 4 0.05
54 79 0.95
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.34
Consensus pattern (54 bp):
GGATATTACGAATCTCACGGTCTACTAATTTACGATCACGACCTCCTATTTACA
Found at i:45899229 original size:54 final size:54
Alignment explanation
Indices: 45899142--45899244 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 54
45899132 AATCTCACGG
*
45899142 TCTACTAATTTACGATCACGACCTCCTATTTACGGGATATTACAAATCTTGTGA
1 TCTACTAATTTACGATCACGACCTCCTACTTACGGGATATTACAAATCTTGTGA
* ** * * *
45899196 TCTACTAATTTATGATCACGACCTTTTACTTACGTGATTTTACGAATCT
1 TCTACTAATTTACGATCACGACCTCCTACTTACGGGATATTACAAATCT
45899245 AGGCGTGTTG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (54 bp):
TCTACTAATTTACGATCACGACCTCCTACTTACGGGATATTACAAATCTTGTGA
Found at i:45899694 original size:54 final size:54
Alignment explanation
Indices: 45899619--45899753 Score: 153
Period size: 54 Copynumber: 2.5 Consensus size: 54
45899609 TATGATAACA
* * ** *
45899619 ACCTTCTACTAACGGGATTTTATGAATATCACGTTCCGTTAATTTACAATTACG
1 ACCTTCTACTTACGTGATTTTATGAATATCACGGCCCGTTAATTTACAATCACG
* * * *** *
45899673 ACCTTCTACTTACGTGTTTTTAAGAATCTTGTGGCCCGTTAATTTACGATCACG
1 ACCTTCTACTTACGTGATTTTATGAATATCACGGCCCGTTAATTTACAATCACG
*
45899727 ACTTTCTACTTACGTGATTTTATGAAT
1 ACCTTCTACTTACGTGATTTTATGAAT
45899754 CTATACATGT
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (54 bp):
ACCTTCTACTTACGTGATTTTATGAATATCACGGCCCGTTAATTTACAATCACG
Found at i:45900993 original size:54 final size:54
Alignment explanation
Indices: 45900801--45900996 Score: 189
Period size: 54 Copynumber: 3.6 Consensus size: 54
45900791 AGCTATAGTT
* *
45900801 GATTTTACGAAT-TGCACGGTCCACTAATTTATGATGATGACCTTTTACTTATGA
1 GATTTTACGAATCT-CACGGTCCGCTAATTTATGATGATGACCTTTTACTTATGG
* * ** * * * * *
45900855 GATTTTATGAATCTCGCGGTTAGCTCATTTACGATGACGACCTTTTACATACGG
1 GATTTTACGAATCTCACGGTCCGCTAATTTATGATGATGACCTTTTACTTATGG
* * * * *
45900909 GACTTTATGAATCTCACGATCCG-TAAATTTATGATCATGACTTTTTACTTATGG
1 GATTTTACGAATCTCACGGTCCGCT-AATTTATGATGATGACCTTTTACTTATGG
* * *
45900963 GATTTTACAAATATCACGGTCCGCTGATTTATGA
1 GATTTTACGAATCTCACGGTCCGCTAATTTATGA
45900997 CCACAACCTT
Statistics
Matches: 110, Mismatches: 29, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
53 1 0.01
54 107 0.97
55 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (54 bp):
GATTTTACGAATCTCACGGTCCGCTAATTTATGATGATGACCTTTTACTTATGG
Found at i:45901455 original size:54 final size:55
Alignment explanation
Indices: 45901388--45901514 Score: 136
Period size: 54 Copynumber: 2.3 Consensus size: 55
45901378 AAGCTTTAGT
** * *
45901388 TGATTTACAATCACGACCTTT-TACAT-CTGAAATTTTACGAATCTCACGGT-TCGC
1 TGATTTATGATCACGACCTTTCTACATAC-GAAATTTTACAAATATCACGGTCT-GC
* **
45901442 TGATTTATGATCACGA-CTTTCTACTTACGGGATTTTACAAATATCACGGTCTGC
1 TGATTTATGATCACGACCTTTCTACATACGAAATTTTACAAATATCACGGTCTGC
*
45901496 TGATTTATGATCACAACCT
1 TGATTTATGATCACGACCT
45901515 ACTATTTACA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
53 4 0.07
54 53 0.87
55 4 0.07
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (55 bp):
TGATTTATGATCACGACCTTTCTACATACGAAATTTTACAAATATCACGGTCTGC
Found at i:45901700 original size:54 final size:54
Alignment explanation
Indices: 45901419--45901701 Score: 237
Period size: 54 Copynumber: 5.2 Consensus size: 54
45901409 TACATCTGAA
* * *
45901419 ATTTTACGAATCTCACGGTTCGCTGATTTATGATCACGACTTTCTACTTACGGG
1 ATTTTACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTACGTG
* * * * * *
45901473 ATTTTACAAATATCACGGTCTGCTGATTTATGATCACAACCTACTATTTACAG-G
1 ATTTTACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTAC-GTG
* * *** * * *
45901527 ATTCTATGAATCTTGTGATCCACTGATTTATGATCACGACCTTCTACTTACATG
1 ATTTTACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTACGTG
* ** * * * ** * *
45901581 GTTTTAAAAATCTCACGGTCTGTTCATTTACAATCACGACCTTTTACTTA-TTAG
1 ATTTTACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTACGT-G
* * * * * *
45901635 TTTTTAAGAATCTCGCGGTCCACTAATTTATGATCACGACCTACTACTTACGTG
1 ATTTTACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTACGTG
45901689 ATTTTACGAATCT
1 ATTTTACGAATCT
45901702 AGACGTGTTG
Statistics
Matches: 173, Mismatches: 52, Indels: 8
0.74 0.22 0.03
Matches are distributed among these distances:
53 1 0.01
54 170 0.98
55 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (54 bp):
ATTTTACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTACGTG
Found at i:45901701 original size:108 final size:108
Alignment explanation
Indices: 45901390--45901701 Score: 320
Period size: 108 Copynumber: 2.9 Consensus size: 108
45901380 GCTTTAGTTG
* * * * * * * *
45901390 ATTTACAATCACGACCTTTTACATCTGAAATTTTACGAATCTCACGGTTCGCTGATTTATGATCA
1 ATTTACAATCACGACCTTTTACTTATCAGATTTTAAGAATCTCGCGGTCCACTGATTTATGATCA
* * * *
45901455 CGACTTTCTACTTACGGGATTTTACAAATATCACGGTCTGCTG
66 CGACCTTCTACTTACGTGATTTTACAAATCTCACGGTCTGCTC
** * ** * * * * * *
45901498 ATTTATGATCACAACCTACTATTTA-CAGGATTCTATGAATCTTGTGATCCACTGATTTATGATC
1 ATTTACAATCACGACCTTTTACTTATCA-GATTTTAAGAATCTCGCGGTCCACTGATTTATGATC
* * * *
45901562 ACGACCTTCTACTTACATGGTTTTAAAAATCTCACGGTCTGTTC
65 ACGACCTTCTACTTACGTGATTTTACAAATCTCACGGTCTGCTC
* * *
45901606 ATTTACAATCACGACCTTTTACTTATTAGTTTTTAAGAATCTCGCGGTCCACTAATTTATGATCA
1 ATTTACAATCACGACCTTTTACTTATCAGATTTTAAGAATCTCGCGGTCCACTGATTTATGATCA
* *
45901671 CGACCTACTACTTACGTGATTTTACGAATCT
66 CGACCTTCTACTTACGTGATTTTACAAATCT
45901702 AGACGTGTTG
Statistics
Matches: 157, Mismatches: 45, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
107 1 0.01
108 155 0.99
109 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.38
Consensus pattern (108 bp):
ATTTACAATCACGACCTTTTACTTATCAGATTTTAAGAATCTCGCGGTCCACTGATTTATGATCA
CGACCTTCTACTTACGTGATTTTACAAATCTCACGGTCTGCTC
Found at i:45902100 original size:563 final size:563
Alignment explanation
Indices: 45901043--45902102 Score: 1215
Period size: 563 Copynumber: 1.9 Consensus size: 563
45901033 TGTTTCGCTG
* * * * **
45901043 ATTTACAATCATGACCTTCTACTTATAGGATTTTACGAATCACGTGGTTCGTTAATTTACGATCA
1 ATTTACAATCACGACCTTCTACTTATAGGATTTTAAGAATCACGCGGTCCACTAATTTACGATCA
* * **
45901108 CGAATTTCTACTACGTTCCTTTAAGAATCTAAGAGTGTTGAAGAAGAACTCAAAACTAACCTCTC
66 CGAACTACTACTACGTGACTTTAAGAATCTAAGAGTGTTGAAGAAGAACTCAAAACTAACCTCTC
* ** * * * *
45901173 TGCTGTTCAGAGTAAGTTAGATGCTAGATATGATGAATACATGCGTGATGAGGAAGAACTCAAAA
131 TACCCTTCAGAGCAAATTAGAAGCTAGATATGATGAATACAGGCGTGATGAGGAAGAACTCAAAA
45901238 CAGACCTTGAAAGAATGAGGATAGAGGAATCAATTTTGATACATTACCTTTGTGAGACTGAAGCT
196 CAGACCTTGAAAGAATGAGGATAGAGGAATCAATTTTGATACATTACCTTTGTGAGACTGAAGCT
* * * ** *
45901303 AGTTCTCTTCACCATACATTTGAAATGATGCTTGAAATGGATCAACCTGCTAAGAAAAATAATGA
261 AGTTCTCTTCACCATACATCTGAAATGAGGCTTCAAATAAATCAACCTGCTAAGAAAAACAATGA
* *
45901368 ATTTTCTAAAAAGCTTTAGTTGATTTACAATCACGACCTTTTACATCTGAAATTTTACGAATCTC
326 ACTTTCTAAAAAGCTTTAGTTGATTTACAATCACGACCTTTTACATCTGAAATTTTAAGAATCTC
* * * * * * *
45901433 ACGGTTCGCTGATTTATGATCACGACTTTCTACTTACGGGATTTTACAAATATCACGGTCTGCTG
391 ACAGTTCGCTAAATTACGATCACAACTTTCTACTTACGAGATTTTACAAATATCACGGTCTACTG
** * * *
45901498 ATTTATGATCACAACCTACTATTTACAGGATTCTATGAATCTTGTGATCCACTGATTTATGATCA
456 ACGTACGATCACAACATACTACTTACAGGATTCTATGAATCTTGTGATCCACTGATTTATGATCA
45901563 CGACCTTCTACTTACATGGTTTTAAAAATCTCACGGTCTGTTC
521 CGACCTTCTACTTACATGGTTTTAAAAATCTCACGGTCTGTTC
* * * *
45901606 ATTTACAATCACGACCTTTTACTTATTA-GTTTTTAAGAATCTCGCGGTCCACTAATTTATGATC
1 ATTTACAATCACGACCTTCTACTTA-TAGGATTTTAAGAATCACGCGGTCCACTAATTTACGATC
* * * * *
45901670 ACGACCTACTACTTACGTGATTTTACGAATCT-AGACGTGTTGAGGAAGAACTCAAAACTGACCT
65 ACGAACTACTAC-TACGTGACTTTAAGAATCTAAGA-GTGTTGAAGAAGAACTCAAAACTAACCT
* * * * *
45901734 CTCTACCCTTTAGAGCAAATTAGAAGGTAGA-GTGATGAATATAGGCGTGTTGAGGAAGAACTCA
128 CTCTACCCTTCAGAGCAAATTAGAAGCTAGATATGATGAATACAGGCGTGATGAGGAAGAACTCA
* * * * * * *
45901798 AAACTA-ACTTTGAAATAATGAGGGTTGAGGAATCAATTTTGTTACATTGCCTTTGTTATG-CTT
193 AAAC-AGACCTTGAAAGAATGAGGATAGAGGAATCAATTTTGATACATTACCTTTGTGA-GAC-T
* * *
45901861 G-AGCTAGTTCTCATT-ACCATACATCTGAAATGAGGCTTCAAATAAATCGATCTGCTTAGAAAA
255 GAAGCTAGTTCTC-TTCACCATACATCTGAAATGAGGCTTCAAATAAATCAACCTGCTAAGAAAA
* ** * * * *
45901924 ACACA-GAACTTTCTTAAAATTTTTAGTTTATTTACAATCACGATCTTTTACTTTCTG-GATTTT
319 ACA-ATGAACTTTCTAAAAAGCTTTAGTTGATTTACAATCACGACCTTTTAC-ATCTGAAATTTT
* * * ** * **
45901987 AAGAATCTTACAGTTCGTTAAATTACGATCACAA-TCTTCTACTTATGAGATTTTATGAATCTTG
382 AAGAATCTCACAGTTCGCTAAATTACGATCACAACT-TTCTACTTACGAGATTTTACAAATATCA
* ** * *
45902051 CGGTTTACTGACGTACGATCATGACATTCTACTTAC-GTGATTTTATGAATCT
446 CGGTCTACTGACGTACGATCACAACATACTACTTACAG-GATTCTATGAATCT
45902103 AGGTGTGTTG
Statistics
Matches: 405, Mismatches: 81, Indels: 22
0.80 0.16 0.04
Matches are distributed among these distances:
562 2 0.00
563 326 0.80
564 77 0.19
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (563 bp):
ATTTACAATCACGACCTTCTACTTATAGGATTTTAAGAATCACGCGGTCCACTAATTTACGATCA
CGAACTACTACTACGTGACTTTAAGAATCTAAGAGTGTTGAAGAAGAACTCAAAACTAACCTCTC
TACCCTTCAGAGCAAATTAGAAGCTAGATATGATGAATACAGGCGTGATGAGGAAGAACTCAAAA
CAGACCTTGAAAGAATGAGGATAGAGGAATCAATTTTGATACATTACCTTTGTGAGACTGAAGCT
AGTTCTCTTCACCATACATCTGAAATGAGGCTTCAAATAAATCAACCTGCTAAGAAAAACAATGA
ACTTTCTAAAAAGCTTTAGTTGATTTACAATCACGACCTTTTACATCTGAAATTTTAAGAATCTC
ACAGTTCGCTAAATTACGATCACAACTTTCTACTTACGAGATTTTACAAATATCACGGTCTACTG
ACGTACGATCACAACATACTACTTACAGGATTCTATGAATCTTGTGATCCACTGATTTATGATCA
CGACCTTCTACTTACATGGTTTTAAAAATCTCACGGTCTGTTC
Found at i:45902809 original size:54 final size:54
Alignment explanation
Indices: 45902751--45902984 Score: 199
Period size: 54 Copynumber: 4.3 Consensus size: 54
45902741 CAAATCACAT
* * *
45902751 GGTCTGCTGACTTACGATAATG-ACCTTCTACTTAAGAGATTTTGCGAATCTCAC
1 GGTCTGCTGATTTACGATCA-GAACCTTCTACTTAAGAGATTTTGCGAATCTTAC
* * * * * *
45902805 GGTCTACTAATTTACAATGAGAACCTTTTACTTATAG-GATTTTACGAATC-TATC
1 GGTCTGCTGATTTACGATCAGAACCTTCTACTTA-AGAGATTTTGCGAATCTTA-C
** * **
45902859 GGTCCACTGATTTACGATCAGAACCTTCTACTTAAGGGATTCTATG-G-ATCTTGT
1 GGTCTGCTGATTTACGATCAGAACCTTCTACTTAAGAGATT-T-TGCGAATCTTAC
* * * ** *
45902913 GGTCTGCTGATTTACAATCACAACCTTCTACTTACGAGATTTTGTAAATCTTGC
1 GGTCTGCTGATTTACGATCAGAACCTTCTACTTAAGAGATTTTGCGAATCTTAC
*
45902967 AGTCTGCTGATTTACGAT
1 GGTCTGCTGATTTACGAT
45902985 TACGACATTA
Statistics
Matches: 145, Mismatches: 26, Indels: 18
0.77 0.14 0.10
Matches are distributed among these distances:
52 2 0.01
53 5 0.03
54 132 0.91
55 5 0.03
56 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (54 bp):
GGTCTGCTGATTTACGATCAGAACCTTCTACTTAAGAGATTTTGCGAATCTTAC
Found at i:45902954 original size:108 final size:107
Alignment explanation
Indices: 45902704--45902955 Score: 242
Period size: 108 Copynumber: 2.3 Consensus size: 107
45902694 AAGCATGAGT
* * * **
45902704 TGATTTAAAATCACGACCTTCTACTTTCAGTATTTTACAAATCACATGGTCTGCTGACTTACGAT
1 TGATTTACAATCACAACCTTCTACTTACAG-ATTTTACAAATCACATGGTCCACTGACTTACGAT
45902769 AATGACCTTCTACTTAAGAGATTTTGCGAATCTCACGGTCTAC
65 AATGACCTTCTACTTAAGAGATTTTGCGAATCTCACGGTCTAC
* * * * * * * *
45902812 TAATTTACAATGAGAACCTTTTACTTATAGGATTTTACGAATC-TATCGGTCCACTGATTTACGA
1 TGATTTACAATCACAACCTTCTACTTACA-GATTTTACAAATCACAT-GGTCCACTGACTTACGA
* * *** *
45902876 TCA-GAACCTTCTACTTAAGGGATTCTATG-G-ATCTTGTGGTCTGC
64 TAATG-ACCTTCTACTTAAGAGATT-T-TGCGAATCTCACGGTCTAC
45902920 TGATTTACAATCACAACCTTCTACTTACGAGATTTT
1 TGATTTACAATCACAACCTTCTACTTAC-AGATTTT
45902956 GTAAATCTTG
Statistics
Matches: 114, Mismatches: 24, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
107 3 0.03
108 105 0.92
109 4 0.04
110 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.37
Consensus pattern (107 bp):
TGATTTACAATCACAACCTTCTACTTACAGATTTTACAAATCACATGGTCCACTGACTTACGATA
ATGACCTTCTACTTAAGAGATTTTGCGAATCTCACGGTCTAC
Found at i:45903330 original size:54 final size:54
Alignment explanation
Indices: 45903262--45903414 Score: 207
Period size: 54 Copynumber: 2.8 Consensus size: 54
45903252 AAAGCTTCAA
* * * **
45903262 TTGATTTACAATCACGACATTTTACTTACGAGATTTTATGAATCTGACAGTCTT
1 TTGATTTACGATCACGACCTTTTACTTACGTGATTTTATGAATCTGACAGTCCG
* * * *
45903316 TTGATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTTACTGTCCG
1 TTGATTTACGATCACGACCTTTTACTTACGTGATTTTATGAATCTGACAGTCCG
* *
45903370 TTGATTTACGATCACAACCTTTTACTTATGTGATTTTATGAATCT
1 TTGATTTACGATCACGACCTTTTACTTACGTGATTTTATGAATCT
45903415 AGGCATGTTG
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 86 1.00
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (54 bp):
TTGATTTACGATCACGACCTTTTACTTACGTGATTTTATGAATCTGACAGTCCG
Found at i:45903727 original size:401 final size:397
Alignment explanation
Indices: 45902919--45903815 Score: 1040
Period size: 401 Copynumber: 2.2 Consensus size: 397
45902909 TTGTGGTCTG
* * *** * * * *
45902919 CTGATTTACAATCACAACCTTCTACTTACGAGATTTTGTAAATCTTGCAGTCTGCTGATTTACGA
1 CTGATTTACGATCACGACCTTCTACTTACGAGATTTTACGAATCTTACTGTCCGTTGATTTACGA
* * * * * * * * *
45902984 TTACGACATTATACTTATATGATTTTACGGATCTAGACGTGTTGAAGAAGAACTTAAAATCAACC
66 TCACAACCTTATACTTATGTGATTTTATGAATCTAGACATGTTGAAGAAGAACTCAAAACCAACC
* * * * * ** * *
45903049 TCTTTGCCTTTAAAGCAAGTTAGATGTTAGAGATGATGAATATAGGGGTGTTGAGAATGAATTCA
131 ACTCTGCCTTTAAAGCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGAGAATAAACTCA
* *
45903114 AAACTGACCATGAAAGATGGATGATAGAGGAATTAATTTTGTTAAATTGCCTTTGTGAGGCTGAA
196 AAACTGACCATGAAAGATGGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGAGGCTGAA
* * * *
45903179 GCTAGTTTTCTTCACCATAGGTCTGTAATGAGGCTTGAAATGGATCAATCTACTAAAAAAAGTAA
261 GCTAGTTCTCTTCACCATACGTCTGAAATGAGGCTTGAAATGGATCAATCTACTAAAAAAAGGAA
*
45903244 CTTTTTAAAAAGCTTCAATTGATTTACAATCACGACATTTTACTTACGAGATTTTATGAATCTGA
326 CTCTTTAAAAAGCTTCAATTGATTTACAATCACGACATTTTACTTACGAGATTTTATGAATCTGA
**
45903309 CAGTCTT
391 CAGTCCA
* *
45903316 TTGATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTTACTGTCCGTTGATTTACGA
1 CTGATTTACGATCACGACCTTCTACTTACGAGATTTTACGAATCTTACTGTCCGTTGATTTACGA
* * * * *
45903381 TCACAACCTTTTACTTATGTGATTTTATGAATCTAGGCATGTTGAGGATGAACTCAAAACCGACC
66 TCACAACCTTATACTTATGTGATTTTATGAATCTAGACATGTTGAAGAAGAACTCAAAACCAACC
*
45903446 ACTCTGCCTTTCAGAA-CAAGTTAAATGCTAGAAATGATGAATATAAATGTGTTGAGGAA-AAAC
131 ACTCTGCCTTT-A-AAGCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGA-GAATAAAC
* * *
45903509 TCAAAACTGACCTTG-AA-A-GGAGGATAGCGGAATTAATTTTGTTATATTACCTTTGTGAGG-T
193 TCAAAACTGACCATGAAAGATGGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGAGGCT
** *
45903570 AGAAGCTAGTTCTCTTCACCATACGTCTGAAATGAGGCTTGAAATGGATTGATCTGCTCAGAAAA
258 -GAAGCTAGTTCTCTTCACCATACGTCTGAAATGAGGCTTGAAATGGATCAATCTACT------A
* * ** * *
45903635 AAAAAAGGAACTCTTTGAAAAGCTTCAGTTGATTTACAATCATTACCTTTTACTTACGGGATTTT
316 AAAAAAGGAACTCTTTAAAAAGCTTCAATTGATTTACAATCACGACATTTTACTTACGAGATTTT
45903700 ATGAATCT-AGCAGTCCA
381 ATGAATCTGA-CAGTCCA
* * * *
45903717 CTGATTTACGATCATGACCTTCTACTTATGAGATTTTACGAATC--CCGTGGTCCGTTGATTTAT
1 CTGATTTACGATCACGACCTTCTACTTACGAGATTTTACGAATCTTAC-T-GTCCGTTGATTTAC
* *
45903780 GATCATAACCTTCTACTTATG-GTATTTTATGAATCT
64 GATCACAACCTTATACTTATGTG-ATTTTATGAATCT
45903816 CATGGTCCAC
Statistics
Matches: 422, Mismatches: 64, Indels: 24
0.83 0.13 0.05
Matches are distributed among these distances:
394 1 0.00
395 89 0.21
396 1 0.00
397 116 0.27
398 50 0.12
399 6 0.01
400 3 0.01
401 156 0.37
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (397 bp):
CTGATTTACGATCACGACCTTCTACTTACGAGATTTTACGAATCTTACTGTCCGTTGATTTACGA
TCACAACCTTATACTTATGTGATTTTATGAATCTAGACATGTTGAAGAAGAACTCAAAACCAACC
ACTCTGCCTTTAAAGCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGAGAATAAACTCA
AAACTGACCATGAAAGATGGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGAGGCTGAA
GCTAGTTCTCTTCACCATACGTCTGAAATGAGGCTTGAAATGGATCAATCTACTAAAAAAAGGAA
CTCTTTAAAAAGCTTCAATTGATTTACAATCACGACATTTTACTTACGAGATTTTATGAATCTGA
CAGTCCA
Found at i:45903860 original size:108 final size:107
Alignment explanation
Indices: 45903662--45903868 Score: 267
Period size: 108 Copynumber: 1.9 Consensus size: 107
45903652 AAAAGCTTCA
* *
45903662 GTTGATTTACAATCATTACCTTTTACTTACGGGATTTTATGAATCTAGCAGTCCACTGATTTACG
1 GTTGATTTACAATCATAACCTTCTACTTACGGGATTTTATGAATCTAG-AGTCCACTGATTTACG
* *
45903727 ATCATGACCTTCTACTTATGAGATTTTACGAATCCCGTGGTCC
65 ATCATAACCTTCTAATTATGAGATTTTACGAATCCCGTGGTCC
** * * *
45903770 GTTGATTTATGATCATAACCTTCTACTTATGGTATTTTATGAATCTCATG-GTCCACTTATTTAC
1 GTTGATTTACAATCATAACCTTCTACTTACGGGATTTTATGAATCT-A-GAGTCCACTGATTTAC
45903834 GATCATAACCTTCTAATTCCA-G-GATTTTACGAATC
64 GATCATAACCTTCTAATT--ATGAGATTTTACGAATC
45903869 TAGGCATGTT
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
108 82 0.95
109 2 0.02
110 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (107 bp):
GTTGATTTACAATCATAACCTTCTACTTACGGGATTTTATGAATCTAGAGTCCACTGATTTACGA
TCATAACCTTCTAATTATGAGATTTTACGAATCCCGTGGTCC
Found at i:45903861 original size:54 final size:53
Alignment explanation
Indices: 45903666--45903869 Score: 191
Period size: 54 Copynumber: 3.8 Consensus size: 53
45903656 GCTTCAGTTG
* * * * * *
45903666 ATTTACAATCATTACCTTTTACTTACGGGATTTTATGAATCT-A-GCAGTCCACTG
1 ATTTACGATCATAACCTTCTACTTA-TGGATTTTACGAATCTCATG--GTCCACTT
* * * *
45903720 ATTTACGATCATGACCTTCTACTTATGAGATTTTACGAATCCCGTGGTCC-GTT
1 ATTTACGATCATAACCTTCTACTTATG-GATTTTACGAATCTCATGGTCCACTT
* *
45903773 GATTTATGATCATAACCTTCTACTTATGGTATTTTATGAATCTCATGGTCCACTT
1 -ATTTACGATCATAACCTTCTACTTATGG-ATTTTACGAATCTCATGGTCCACTT
*
45903828 ATTTACGATCATAACCTTCTAATTCCA-GGATTTTACGAATCT
1 ATTTACGATCATAACCTTCTACTT--ATGGATTTTACGAATCT
45903870 AGGCATGTTG
Statistics
Matches: 124, Mismatches: 18, Indels: 16
0.78 0.11 0.10
Matches are distributed among these distances:
53 3 0.02
54 115 0.93
55 4 0.03
56 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (53 bp):
ATTTACGATCATAACCTTCTACTTATGGATTTTACGAATCTCATGGTCCACTT
Found at i:45905390 original size:162 final size:161
Alignment explanation
Indices: 45905113--45905483 Score: 377
Period size: 162 Copynumber: 2.3 Consensus size: 161
45905103 TTACTTACAG
* * * * *
45905113 GATTTTACGAATCTCAGTATCTGCTGATTTACGATGACGACCTTCTACTTATAGGATTTTACTAA
1 GATTTTACGAATCTC-GGATTTGCTAATTTACGATCACGACCTTCTACTTATAGGATTTTACAAA
* * * * * * * ***
45905178 TCTTGCAATCTGTTGATTTACAATCACGACCATCTATTTATAAAATTTTATGGATCTAGTGGTCC
65 TCTCGCAATCCGCTGATTTACAATCACAACCATCTACTTACAAAATTTTATGAATCTAGCAATCC
45905243 ACTAATTTAAGATCACAACCTTCTACTTATG-
130 ACTAATTTAAGATCACAACCTTCTACTTATGA
*
45905274 GCATTTTACGAATCTCGCGATTTGCTAATTTGCGATCACGACCTTCTACTTA-AGGGATTTTACA
1 G-ATTTTACGAATCTCG-GATTTGCTAATTTACGATCACGACCTTCTACTTATA-GGATTTTACA
*** ** * * * *
45905338 AATCTCGTGGTCCGCTGATTTATGATCACAACCTTCTACTTACGAGATTTTATGAATCTCGCAAT
63 AATCTCGCAATCCGCTGATTTACAATCACAACCATCTACTTACAAAATTTTATGAATCTAGCAAT
* ** *
45905403 CCACTAATTTACGATCATGACCTTTTACTTATGA
128 CCACTAATTTAAGATCACAACCTTCTACTTATGA
** * * *
45905437 GATTTTACGAATCTCGTGATTTATTGATTCACGATCACAACCTTCTA
1 GATTTTACGAATCTCG-GATTTGCTAATTTACGATCACGACCTTCTA
45905484 TTGACTTGAT
Statistics
Matches: 170, Mismatches: 36, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
161 3 0.02
162 166 0.98
163 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (161 bp):
GATTTTACGAATCTCGGATTTGCTAATTTACGATCACGACCTTCTACTTATAGGATTTTACAAAT
CTCGCAATCCGCTGATTTACAATCACAACCATCTACTTACAAAATTTTATGAATCTAGCAATCCA
CTAATTTAAGATCACAACCTTCTACTTATGA
Found at i:45905451 original size:108 final size:107
Alignment explanation
Indices: 45905113--45905454 Score: 330
Period size: 108 Copynumber: 3.2 Consensus size: 107
45905103 TTACTTACAG
* * * * * *
45905113 GATTTTACGAATCTCAGT-ATCTGCTGATTTACGATGACGACCTTCTACTTATAGGATTTTACT-
1 GATTTTACGAATCTC-GTGGTCCGCTGATTTAAGATCACAACCTTCTACTTAGA-GATTTTA-TG
* * * * * * *
45905176 AATCTTGCAATCTGTTGATTTACAATCACGACCATCTATTTATAA
63 AATCTCGCAATCTGCTAATTTACGATCACGACCTTCTACTTATGA
* * * * * * *
45905221 AATTTTATGGATCTAGTGGTCCACTAATTTAAGATCACAACCTTCTACTTATG-GCATTTTACGA
1 GATTTTACGAATCTCGTGGTCCGCTGATTTAAGATCACAACCTTCTACTTA-GAG-ATTTTATGA
* * * * *
45905285 ATCTCGCGATTTGCTAATTTGCGATCACGACCTTCTACTTAAGG
64 ATCTCGCAATCTGCTAATTTACGATCACGACCTTCTACTTATGA
* *
45905329 GATTTTACAAATCTCGTGGTCCGCTGATTTATGATCACAACCTTCTACTTACGAGATTTTATGAA
1 GATTTTACGAATCTCGTGGTCCGCTGATTTAAGATCACAACCTTCTACTTA-GAGATTTTATGAA
** * *
45905394 TCTCGCAATCCACTAATTTACGATCATGACCTTTTACTTATGA
65 TCTCGCAATCTGCTAATTTACGATCACGACCTTCTACTTATGA
45905437 GATTTTACGAATCTCGTG
1 GATTTTACGAATCTCGTG
45905455 ATTTATTGAT
Statistics
Matches: 184, Mismatches: 45, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
107 3 0.02
108 180 0.98
109 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.37
Consensus pattern (107 bp):
GATTTTACGAATCTCGTGGTCCGCTGATTTAAGATCACAACCTTCTACTTAGAGATTTTATGAAT
CTCGCAATCTGCTAATTTACGATCACGACCTTCTACTTATGA
Found at i:45905465 original size:108 final size:108
Alignment explanation
Indices: 45905104--45905504 Score: 294
Period size: 108 Copynumber: 3.7 Consensus size: 108
45905094 CACAACCTAT
* ** * * * *
45905104 TACTTACAG-GATTTTACGAATCTCAGT-ATCTGCTGATTTACGATGACGACCTTCTACTTATAG
1 TACTTA-AGAGATTTTACAAATCTC-GTGATCCACTGATTTAAGATCACAACCTTCTACTTA-CG
* * *** * * *
45905167 G-ATTTTACTAATCTTGCAATCTGTTGATTTACAATCACGACCATC
63 GCATTTTACGAATCTCGCAATCCACTAATTTACGATCACGACCTTC
* * *** * * * *
45905212 TATTTATA-AAATTTTATGGATCTAGTGGTCCACTAATTTAAGATCACAACCTTCTACTTATGGC
1 TACTTA-AGAGATTTTACAAATCTCGTGATCCACTGATTTAAGATCACAACCTTCTACTTACGGC
* *** *
45905276 ATTTTACGAATCTCGCGATTTGCTAATTTGCGATCACGACCTTC
65 ATTTTACGAATCTCGCAATCCACTAATTTACGATCACGACCTTC
* * * *
45905320 TACTTAAGGGATTTTACAAATCTCGTGGTCCGCTGATTTATGATCACAACCTTCTACTTACGAG-
1 TACTTAAGAGATTTTACAAATCTCGTGATCCACTGATTTAAGATCACAACCTTCTACTTACG-GC
* * *
45905384 ATTTTATGAATCTCGCAATCCACTAATTTACGATCATGACCTTT
65 ATTTTACGAATCTCGCAATCCACTAATTTACGATCACGACCTTC
* * ** * * * *
45905428 TACTTATGAGATTTTACGAATCTCGTGATTTATTGATTCACGATCACAACCTTCTA-TTGACTTG
1 TACTTAAGAGATTTTACAAATCTCGTGATCCACTGATTTAAGATCACAACCTTCTACTT-AC-GG
45905492 -ATTTTACGAATCT
64 CATTTTACGAATCT
45905505 AAGCGTGTTC
Statistics
Matches: 232, Mismatches: 54, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
107 7 0.03
108 224 0.97
109 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (108 bp):
TACTTAAGAGATTTTACAAATCTCGTGATCCACTGATTTAAGATCACAACCTTCTACTTACGGCA
TTTTACGAATCTCGCAATCCACTAATTTACGATCACGACCTTC
Found at i:45905471 original size:54 final size:54
Alignment explanation
Indices: 45905113--45905504 Score: 254
Period size: 54 Copynumber: 7.3 Consensus size: 54
45905103 TTACTTACAG
* ** * *
45905113 GATTTTACGAATCTCAG-TATCTGCTGATTTACGATGACGACCTTCTACTTAT-A
1 GATTTTACGAATCTC-GCGATCCACTAATTTACGATCACGACCTTCTACTTATGA
* * * *** * * * * *
45905166 GGATTTTACTAATCTTGCAATCTGTTGATTTACAATCACGACCATCTATTTATAA
1 -GATTTTACGAATCTCGCGATCCACTAATTTACGATCACGACCTTCTACTTATGA
* * * * * * * *
45905221 AATTTTATGGATCTAGTGGTCCACTAATTTAAGATCACAACCTTCTACTTATG-
1 GATTTTACGAATCTCGCGATCCACTAATTTACGATCACGACCTTCTACTTATGA
*** * * *
45905274 GCATTTTACGAATCTCGCGATTTGCTAATTTGCGATCACGACCTTCTACTTAAGG
1 G-ATTTTACGAATCTCGCGATCCACTAATTTACGATCACGACCTTCTACTTATGA
* * * * * * * *
45905329 GATTTTACAAATCTCGTGGTCCGCTGATTTATGATCACAACCTTCTACTTACGA
1 GATTTTACGAATCTCGCGATCCACTAATTTACGATCACGACCTTCTACTTATGA
* * * *
45905383 GATTTTATGAATCTCGCAATCCACTAATTTACGATCATGACCTTTTACTTATGA
1 GATTTTACGAATCTCGCGATCCACTAATTTACGATCACGACCTTCTACTTATGA
* ** * * * * *
45905437 GATTTTACGAATCTCGTGATTTATTGATTCACGATCACAACCTTCTA-TTGACT-T
1 GATTTTACGAATCTCGCGATCCACTAATTTACGATCACGACCTTCTACTT-A-TGA
45905491 GATTTTACGAATCT
1 GATTTTACGAATCT
45905505 AAGCGTGTTC
Statistics
Matches: 258, Mismatches: 74, Indels: 12
0.75 0.22 0.03
Matches are distributed among these distances:
53 3 0.01
54 252 0.98
55 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (54 bp):
GATTTTACGAATCTCGCGATCCACTAATTTACGATCACGACCTTCTACTTATGA
Found at i:45905819 original size:54 final size:55
Alignment explanation
Indices: 45905737--45906035 Score: 187
Period size: 54 Copynumber: 5.5 Consensus size: 55
45905727 AAAGAGCTTT
* * * *
45905737 ACCTTTTACTTACGGGATTTTACGAATCTTGA-AGT-TCGCTAACTTACGATGATG
1 ACCTTCTACTTACGGGATTTTACGAATCTTCACAGTCT-GCTAACTTACGATCACG
* *
45905791 ACCTTCTACTTACGGGATTTTACGAATC-TCACAGTCTGCTGATTTACGATCACG
1 ACCTTCTACTTACGGGATTTTACGAATCTTCACAGTCTGCTAACTTACGATCACG
* * *** ** * * *
45905845 ACCTTCTACTTATGGGATTTTACAAATC-TCGTGGTCCACTGATTTACGATCACA
1 ACCTTCTACTTACGGGATTTTACGAATCTTCACAGTCTGCTAACTTACGATCACG
* ** * * * * * * *
45905899 ACCTTCTAGTTATAGGATTTTACGAATC-TCGCGGTCTACTGATTTATGATCATG
1 ACCTTCTACTTACGGGATTTTACGAATCTTCACAGTCTGCTAACTTACGATCACG
* ** * ** * * * *
45905953 ACCTTCTACTTAAGAAATTTTACAAATC-TCATGGTCCGTTAATTTACGATCATG
1 ACCTTCTACTTACGGGATTTTACGAATCTTCACAGTCTGCTAACTTACGATCACG
* * * *
45906007 TCCTTTTACTTATGGGATTTTACAAATCT
1 ACCTTCTACTTACGGGATTTTACGAATCT
45906036 ACCTATCCAT
Statistics
Matches: 202, Mismatches: 40, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
53 2 0.01
54 199 0.99
55 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (55 bp):
ACCTTCTACTTACGGGATTTTACGAATCTTCACAGTCTGCTAACTTACGATCACG
Found at i:45905926 original size:108 final size:108
Alignment explanation
Indices: 45905780--45906122 Score: 402
Period size: 108 Copynumber: 3.2 Consensus size: 108
45905770 GTTCGCTAAC
* * * * *
45905780 TTACGATGATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCTGCTGATTTACGATCACG
1 TTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCACAGTCTACTGATTTACGATCATG
*
45905845 ACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCACTGAT
66 ACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCATTGAT
* * * * * *
45905888 TTACGATCACAACCTTCTAGTTATAGGATTTTACGAATCTCGCGGTCTACTGATTTATGATCATG
1 TTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCACAGTCTACTGATTTACGATCATG
* ** * * *
45905953 ACCTTCTACTTAAGAAATTTTACAAATCTCATGGTCCGTTAAT
66 ACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCATTGAT
* * * * * * *
45905996 TTACGATCATGTCCTTTTACTTATGGGATTTTACAAATCT-ACCTA-TCCATTGATTTACAATCA
1 TTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCA-C-AGTCTACTGATTTACGATCA
* * *
45906059 TGACATTCTACTTATAGGATTTTACGAATCTCGTGGTCCATTGAT
64 TGACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCATTGAT
45906104 TTACGATCACGACCTTCTA
1 TTACGATCACGACCTTCTA
45906123 TTGACGTAAT
Statistics
Matches: 190, Mismatches: 43, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
108 190 1.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (108 bp):
TTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCACAGTCTACTGATTTACGATCATG
ACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCATTGAT
Found at i:45906019 original size:162 final size:162
Alignment explanation
Indices: 45905780--45906122 Score: 436
Period size: 162 Copynumber: 2.1 Consensus size: 162
45905770 GTTCGCTAAC
* * ** * * *
45905780 TTACGATGATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCTGCTGATTTACGATCACG
1 TTACGATCATGACCTTCTACTTAAGAAATTTTACAAATCTCACAGTCCGCTAATTTACGATCACG
* * * * *
45905845 ACCTTCTACTTATGGGATTTTACAAATCT-CGTGGTCCACTGATTTACGATCACAACCTTCTAGT
66 ACCTTCTACTTATGGGATTTTACAAATCTACCT-ATCCACTGATTTACAATCACAACATTCTACT
*
45905909 TATAGGATTTTACGAATCTCGCGGTCTACTGAT
130 TATAGGATTTTACGAATCTCGCGGTCCACTGAT
* ** * *
45905942 TTATGATCATGACCTTCTACTTAAGAAATTTTACAAATCTCATGGTCCGTTAATTTACGATCATG
1 TTACGATCATGACCTTCTACTTAAGAAATTTTACAAATCTCACAGTCCGCTAATTTACGATCACG
* * * **
45906007 TCCTTTTACTTATGGGATTTTACAAATCTACCTATCCATTGATTTACAATCATGACATTCTACTT
66 ACCTTCTACTTATGGGATTTTACAAATCTACCTATCCACTGATTTACAATCACAACATTCTACTT
* *
45906072 ATAGGATTTTACGAATCTCGTGGTCCATTGAT
131 ATAGGATTTTACGAATCTCGCGGTCCACTGAT
*
45906104 TTACGATCACGACCTTCTA
1 TTACGATCATGACCTTCTA
45906123 TTGACGTAAT
Statistics
Matches: 153, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
162 151 0.99
163 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (162 bp):
TTACGATCATGACCTTCTACTTAAGAAATTTTACAAATCTCACAGTCCGCTAATTTACGATCACG
ACCTTCTACTTATGGGATTTTACAAATCTACCTATCCACTGATTTACAATCACAACATTCTACTT
ATAGGATTTTACGAATCTCGCGGTCCACTGAT
Found at i:45906052 original size:54 final size:54
Alignment explanation
Indices: 45905780--45906122 Score: 341
Period size: 54 Copynumber: 6.4 Consensus size: 54
45905770 GTTCGCTAAC
* * * * ***
45905780 TTACGATGATGACCTTCTACTTACGGGATTTTACGAATCTCAC-AGTCTGCTGAT
1 TTACGATCATGACCTTCTACTTATGGGATTTTACAAATCTC-CTGGTCCATTGAT
* * *
45905834 TTACGATCACGACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCACTGAT
1 TTACGATCATGACCTTCTACTTATGGGATTTTACAAATCTCCTGGTCCATTGAT
** * * * * *
45905888 TTACGATCACAACCTTCTAGTTATAGGATTTTACGAATCTCGC-GGTCTACTGAT
1 TTACGATCATGACCTTCTACTTATGGGATTTTACAAATCTC-CTGGTCCATTGAT
* * ** * * *
45905942 TTATGATCATGACCTTCTACTTAAGAAATTTTACAAATCTCATGGTCCGTTAAT
1 TTACGATCATGACCTTCTACTTATGGGATTTTACAAATCTCCTGGTCCATTGAT
* * *
45905996 TTACGATCATGTCCTTTTACTTATGGGATTTTACAAATCTACCT-ATCCATTGAT
1 TTACGATCATGACCTTCTACTTATGGGATTTTACAAATCT-CCTGGTCCATTGAT
* * * * *
45906050 TTACAATCATGACATTCTACTTATAGGATTTTACGAATCTCGTGGTCCATTGAT
1 TTACGATCATGACCTTCTACTTATGGGATTTTACAAATCTCCTGGTCCATTGAT
*
45906104 TTACGATCACGACCTTCTA
1 TTACGATCATGACCTTCTA
45906123 TTGACGTAAT
Statistics
Matches: 235, Mismatches: 49, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
53 2 0.01
54 231 0.98
55 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (54 bp):
TTACGATCATGACCTTCTACTTATGGGATTTTACAAATCTCCTGGTCCATTGAT
Found at i:45906454 original size:639 final size:616
Alignment explanation
Indices: 45905185--45906911 Score: 1674
Period size: 639 Copynumber: 2.8 Consensus size: 616
45905175 TAATCTTGCA
* * * * *** *** * *
45905185 ATCTGTTGATTTACAATCACGACCATCTATTTATAAAATTTTATGGATCTAGTGGTCCACTAATT
1 ATCTGCTGATTTACGATCACGACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCACTGATT
* * * **
45905250 TAAGATCACAACCTTCTACTTATGGCATTTTACGAATCTCGCGATTTGCTAATTTGCGATCACGA
66 TACGATCACAACCTTCTA-TTATGG-ATTTTACGAATCTCGCGGTCTGCTAATTTATGATCACGA
*
45905315 CCTTCTACTTAAGGGATTTTACAAATCTCGTGGTCCGCTGATTTATGATCACAACCTTCTACTTA
129 CCTTCTACTTAAGGGATTTTACAAATCTCGTGGTCCGCTGATTTACGATCACAACCTTCTACTTA
* * * *
45905380 CGAGATTTTATGAATCTCGCAATCCACTAATTTACGATCATGACCTTTTACTTATGAGATTTTAC
194 AGAGATTTTATGAATCTC-CTATCCACTGATTTACGATCATGACCTTCTACTTATGAGATTTTAC
* * * * * *
45905445 GAATCTCGTGATTTATTGATTCACGATCACAACCTTCTATTGACTTGATTTTACGAATCTAAGCG
258 GAATCTCGTGGTTCATTGATTTACGATCACAACCTTCTATTGACGTAATTTTACGAATCTAGGCG
* * * *
45905510 TGTTCAAGAAGAACTAAAAACTGACCTTTCTACCCTTCAAAACAAGTTTGATGCTAGAGATGATT
323 TGTTAAAGAAGAACTAAAAACTGACCTCTCT-CCCTTCAGAGCAAGTTTGATGCTAGAGATGATT
** * * * *
45905575 AATATAATCGTGTTGAGGAAGAACGCAAAACTGACCTTGGAATAAGGAGGCTAGAGAAATCAAAT
387 AATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTT--AA-AAGGA-GATAGAGGAATTAAAT
* * * *
45905640 TTGTTACATTGCCCTTGTGAGGCTGAACCAAGTTCTTTTCACCAAACGTTTGAAATGAGGTTTGA
448 TTGTTACATTGCCATTGTGAGGCTGAACCAAGTTCTCTTCACCAAACGTCTGAAATGAGGCTTGA
* * * *** **
45905705 AATGGATCGATCTACTAAAAAGAAAGAGCTTTACCTTTTACTTACGGGATTTTACGAATCTTGAA
513 AATGGATCGATCTACGAAAAACAAAGAACTTTA-CTAAAACTTACGGGATTTTACGAATCACGAA
* * * * *
45905770 GTTCGCTAACTTACGATGATGACCTTCTACTTACGGGATTTTACGAATCTCAC
577 CTT--CTAACTTACGATGATCACCTTCGACGTAC--G------CGAAT-T--T
45905823 AGTCTGCTGATTTACGATCACGACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCACTGAT
1 A-TCTGCTGATTTACGATCACGACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCACTGAT
* * *
45905888 TTACGATCACAACCTTCTAGTTATAGGATTTTACGAATCTCGCGGTCTACTGATTTATGATCATG
65 TTACGATCACAACCTTCTA-TTAT-GGATTTTACGAATCTCGCGGTCTGCTAATTTATGATCACG
** * * * *** *
45905953 ACCTTCTACTTAAGAAATTTTACAAATCTCATGGTCCGTTAATTTACGATCATGTCCTTTTACTT
128 ACCTTCTACTTAAGGGATTTTACAAATCTCGTGGTCCGCTGATTTACGATCACAACCTTCTACTT
* * ** * * *
45906018 ATGGGATTTTACAAATCTACCTATCCATTGATTTACAATCATGACATTCTACTTAT-AGGATTTT
193 AAGAGATTTTATGAATCT-CCTATCCACTGATTTACGATCATGACCTTCTACTTATGA-GATTTT
* * * *
45906082 ACGAATCTCGTGGTCCATTGATTTACGATCACGACCTTCTATTGACGTAATTATACAAATCTAGG
256 ACGAATCTCGTGGTTCATTGATTTACGATCACAACCTTCTATTGACGTAATTTTACGAATCTAGG
* * ** * *
45906147 CATGTTGAAGAAGAACTAAAAACTGACCTCTCTGCTTTTCAGAGCAAGTTAGATGCTAGGGATGA
321 CGTGTTAAAGAAGAACTAAAAACTGACCTCTCT-CCCTTCAGAGCAAGTTTGATGCTAGAGATGA
45906212 TTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGATTAGAGGAATTAAATT
385 TTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGA-TAGAGGAATTAAATT
* * * * *
45906277 TGTTACCTTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATACGTCTGAAATGAGGCTTGAA
449 TGTTACATTGCCATTGTGAGGCTGAACCAAGTTCTCTTCACCAAACGTCTGAAATGAGGCTTGAA
* * * *
45906342 ATGGATTGATTTGCACAGAAAAACAAGGAACTTT-CTGAAAAGCTTTA-GTTGA-TTTAC-AATC
514 ATGGATCGATCT--AC-GAAAAACAAAGAACTTTACT-AAAA-C-TTACG-GGATTTTACGAATC
* * * * * *
45906403 ACGACCTT-TTACTTACGGGTTATCA----CGAC-T-CTCG-A--G
572 ACGAACTTCTAACTTAC-GATGATCACCTTCGACGTACGCGAATTT
* * * * * * * * **
45906439 GTCTGCTAATTTACGATGATGACCTTCGACTTATGGGATTTTATGAAA-CTCATAGTCTGCTGAT
1 ATCTGCTGATTTACGATCACGACCTTCTACTTATGGGATTTTA-CAAATCTCGTGGTCCACTGAT
* * * * *
45906503 TTACGATCACGACCTACT-TT-TGAGATTTTATGAATCTCGTGGTCCGCTAATTTATGATCACGA
65 TTACGATCACAACCTTCTATTATG-GATTTTACGAATCTCGCGGTCTGCTAATTTATGATCACGA
* * * * * * *
45906566 CTTTCTACTTACGGGATTTTACTAATCTTGCGGTGCACTGATTTACGATCACAACCTTCTACTTA
129 CCTTCTACTTAAGGGATTTTACAAATCTCGTGGTCCGCTGATTTACGATCACAACCTTCTACTTA
* * * * *
45906631 AGAAATTTTATGAATCTCGTGGTCCACTGATTTACGATCATGACCTTCTACTTACGAGATTTTAT
194 AGAGATTTTATGAATCTCCT-ATCCACTGATTTACGATCATGACCTTCTACTTATGAGATTTTAC
* * * * * * *
45906696 GAATCTCGCGGTTCGTTGATTTACGATGACAAACTTCTACTGACGTAATTTTATGAATCTTGGCG
258 GAATCTCGTGGTTCATTGATTTACGATCACAACCTTCTATTGACGTAATTTTACGAATCTAGGCG
* * *
45906761 TGTTAAAGAAGAACTAAAAA-TTAGCCTCTCATCCCTTCAGAGCAAGTTTGATTCGAGAGATGAT
323 TGTTAAAGAAGAACTAAAAACTGA-CCTCTC-TCCCTTCAGAGCAAGTTTGATGCTAGAGATGAT
* * * *
45906825 TAATATTGGCGTGTTGAGGAAGAACTCAAAACTAATCTTAAAATGAGGATAGAGGAATTAAATTT
386 TAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGA-GATAGAGGAATTAAATTT
45906890 GTTACATTGCCATTGTGAGGCT
450 GTTACATTGCCATTGTGAGGCT
45906912 AAAACGACGG
Statistics
Matches: 901, Mismatches: 168, Indels: 66
0.79 0.15 0.06
Matches are distributed among these distances:
611 5 0.01
612 314 0.35
613 6 0.01
615 66 0.07
616 3 0.00
621 1 0.00
622 2 0.00
630 1 0.00
631 1 0.00
632 3 0.00
635 8 0.01
636 90 0.10
637 4 0.00
638 13 0.01
639 376 0.42
640 8 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (616 bp):
ATCTGCTGATTTACGATCACGACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCACTGATT
TACGATCACAACCTTCTATTATGGATTTTACGAATCTCGCGGTCTGCTAATTTATGATCACGACC
TTCTACTTAAGGGATTTTACAAATCTCGTGGTCCGCTGATTTACGATCACAACCTTCTACTTAAG
AGATTTTATGAATCTCCTATCCACTGATTTACGATCATGACCTTCTACTTATGAGATTTTACGAA
TCTCGTGGTTCATTGATTTACGATCACAACCTTCTATTGACGTAATTTTACGAATCTAGGCGTGT
TAAAGAAGAACTAAAAACTGACCTCTCTCCCTTCAGAGCAAGTTTGATGCTAGAGATGATTAATA
TAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGATAGAGGAATTAAATTTGTTACA
TTGCCATTGTGAGGCTGAACCAAGTTCTCTTCACCAAACGTCTGAAATGAGGCTTGAAATGGATC
GATCTACGAAAAACAAAGAACTTTACTAAAACTTACGGGATTTTACGAATCACGAACTTCTAACT
TACGATGATCACCTTCGACGTACGCGAATTT
Found at i:45906497 original size:54 final size:53
Alignment explanation
Indices: 45906439--45906586 Score: 156
Period size: 51 Copynumber: 2.8 Consensus size: 53
45906429 GACTCTCGAG
* *
45906439 GTCTGCTAATTTACGATGATGACCTTCGACTTATGGGATTTTATGAAACTCATA
1 GTCTGCTAATTTACGATCACGACCTTC-ACTTATGGGATTTTATGAAACTCATA
* * * * * *
45906493 GTCTGCTGATTTACGATCACGACC-T-ACTTTTGAGATTTTATGAATCTCGTG
1 GTCTGCTAATTTACGATCACGACCTTCACTTATGGGATTTTATGAAACTCATA
* * * *
45906544 GTCCGCTAATTTATGATCACGACTTTCTACTTACGGGATTTTA
1 GTCTGCTAATTTACGATCACGACCTTC-ACTTATGGGATTTTA
45906587 CTAATCTTGC
Statistics
Matches: 76, Mismatches: 15, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
51 41 0.54
52 1 0.01
53 1 0.01
54 33 0.43
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (53 bp):
GTCTGCTAATTTACGATCACGACCTTCACTTATGGGATTTTATGAAACTCATA
Found at i:45906593 original size:54 final size:54
Alignment explanation
Indices: 45906391--45906755 Score: 301
Period size: 54 Copynumber: 6.8 Consensus size: 54
45906381 AAGCTTTAGT
* * * * * * * *
45906391 TGATTTACAATCACGACCTTTTACTTACG-GGTTATCACGACTCTCGAGGTCTGC
1 TGATTTACGATCACGACCTTCTACTTACGAGATT-TTATGAATCTCGTGGTCCGC
* * * * * * * * * *
45906445 TAATTTACGATGATGACCTTCGACTTATGGGATTTTATGAAACTCATAGTCTGC
1 TGATTTACGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGTGGTCCGC
**
45906499 TGATTTACGATCACGA-C--CTACTTTTGAGATTTTATGAATCTCGTGGTCCGC
1 TGATTTACGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGTGGTCCGC
* * * * * * * *
45906550 TAATTTATGATCACGACTTTCTACTTACGGGATTTTACT-AATCTTGCGGTGCAC
1 TGATTTACGATCACGACCTTCTACTTACGAGATTTTA-TGAATCTCGTGGTCCGC
* * * *
45906604 TGATTTACGATCACAACCTTCTACTTAAGAAATTTTATGAATCTCGTGGTCCAC
1 TGATTTACGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGTGGTCCGC
* * * *
45906658 TGATTTACGATCATGACCTTCTACTTACGAGATTTTATGAATCTCGCGGTTCGT
1 TGATTTACGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGTGGTCCGC
* * * *
45906712 TGATTTACGATGACAAACTTCTACTGACGTA-ATTTTATGAATCT
1 TGATTTACGATCACGACCTTCTACTTACG-AGATTTTATGAATCT
45906756 TGGCGTGTTA
Statistics
Matches: 246, Mismatches: 58, Indels: 14
0.77 0.18 0.04
Matches are distributed among these distances:
51 41 0.17
53 2 0.01
54 198 0.80
55 5 0.02
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (54 bp):
TGATTTACGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGTGGTCCGC
Found at i:45907701 original size:46 final size:46
Alignment explanation
Indices: 45907633--45907923 Score: 483
Period size: 46 Copynumber: 6.3 Consensus size: 46
45907623 TACCCTGTTT
* *
45907633 TGGACAACATTTATACATCAAATTGGACAGCATGAATATGCTCAAAA
1 TGGACAGCA-TTATACATCAAATTGGACAGCATCAATATGCTCAAAA
*
45907680 TGGACAGCATTATACTTCAAATTGGACAGCATCAATATGCTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * *
45907726 TGGACAGCATTATACATCAAATTGGACAGCTTTAATATGCTCAAAT
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
45907772 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
*
45907818 TGGACAGCATTATACATCAAATTGGACAGCATCAATATACTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * *
45907864 TGGACAGCATTATACATTAAATTGGACAGTATCAATATGCTCAAAG
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
45907910 TGGACAGCATTATA
1 TGGACAGCATTATA
45907924 ACATATAAAA
Statistics
Matches: 229, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
46 221 0.97
47 8 0.03
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.26
Consensus pattern (46 bp):
TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
Found at i:45908662 original size:41 final size:40
Alignment explanation
Indices: 45908594--45908708 Score: 131
Period size: 41 Copynumber: 2.8 Consensus size: 40
45908584 AATGTTTCGT
* * *
45908594 ACACTAATTGCCATCGCATAGCCGAAGCTATTATAATCTCGC
1 ACACTAACTGCCAT-ACATAGCCGAAGCTATT-CAATCTCGC
* * *
45908636 ACACTAACTGCCTTACATAGCTGAAGCTATCTCAGTCTCGC
1 ACACTAACTGCCATACATAGCCGAAGCTAT-TCAATCTCGC
* *
45908677 ACACTAAGTGCCATATATAGCCGAAGCTATTC
1 ACACTAACTGCCATACATAGCCGAAGCTATTC
45908709 CAAATCACAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
40 2 0.03
41 47 0.76
42 13 0.21
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (40 bp):
ACACTAACTGCCATACATAGCCGAAGCTATTCAATCTCGC
Found at i:45914057 original size:25 final size:26
Alignment explanation
Indices: 45914028--45914083 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
45914018 TTAATTAGTA
*
45914028 TAAAATATT-AATAATTTAAT-AAAT
1 TAAAATATTAAATAATTAAATAAAAT
45914052 TGAAAA-ATTAAATAATTAAATAAAAT
1 T-AAAATATTAAATAATTAAATAAAAT
45914078 TAAAAT
1 TAAAAT
45914084 TTAGGAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 4 0.15
25 18 0.67
26 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
TAAAATATTAAATAATTAAATAAAAT
Found at i:45914694 original size:22 final size:19
Alignment explanation
Indices: 45914655--45914696 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
45914645 TGCAAAGTTG
45914655 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
45914674 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
45914696 A
1 A
45914697 ATGATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:45914816 original size:29 final size:30
Alignment explanation
Indices: 45914757--45914817 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
45914747 GTCTTTCAAA
* * *
45914757 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACAACAAAATTTT
45914787 AATATTTACAAAAAGAG-CAACAAAATTTT
1 AATATTTACAAAAAGAGACAACAAAATTTT
45914816 AA
1 AA
45914818 AAATAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.52, C:0.10, G:0.07, T:0.31
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACAAAATTTT
Found at i:45918311 original size:20 final size:19
Alignment explanation
Indices: 45918272--45918319 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
45918262 ACTTTTCCTC
45918272 AAACTTTTA--TT-CCCCA
1 AAACTTTTATTTTCCCCCA
*
45918288 AAACTTTTTATTTTCCCCCT
1 AAAC-TTTTATTTTCCCCCA
45918308 AAACTTTTATTT
1 AAACTTTTATTT
45918320 CTCACATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 4 0.15
17 5 0.19
19 10 0.37
20 8 0.30
ACGTcount: A:0.27, C:0.25, G:0.00, T:0.48
Consensus pattern (19 bp):
AAACTTTTATTTTCCCCCA
Found at i:45921361 original size:8 final size:8
Alignment explanation
Indices: 45921348--45921375 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
45921338 TCAAAATGCA
45921348 AAATTCAC
1 AAATTCAC
45921356 AAATTCAC
1 AAATTCAC
45921364 AAATTCAC
1 AAATTCAC
45921372 AAAT
1 AAAT
45921376 AATGACTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.54, C:0.21, G:0.00, T:0.25
Consensus pattern (8 bp):
AAATTCAC
Found at i:45922375 original size:182 final size:180
Alignment explanation
Indices: 45922068--45922433 Score: 597
Period size: 182 Copynumber: 2.0 Consensus size: 180
45922058 TCAGCTACCT
*
45922068 TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTATAATTTCAATCCGTTTAAAT
1 TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTACAATTTCAATCCGTTTAAAT
* *
45922133 AATTAGTTCATTAGTTTCCTTACAATTGCAATGAAAGAATAACTTAGTCATGGTTTTACTTAATC
66 AATTAATTCATTAGTTACCTTACAATTGCAATGAAAGAATAACTTAGTCATGGTTTTACTTAATC
* **
45922198 AAACATCTTACCGAGGCCTATAACAACACAAACACAATTTTAATAACTCAAG
131 AAACATCTTACCGAGGCCTATAACAACA-AAA-AAAAAATTAATAACTCAAG
* *
45922250 TAGATGATTAAACATGCACTTATTGAGTATCGTGTCAATTAATTACAATTTCAATCCGTTTAAAT
1 TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTACAATTTCAATCCGTTTAAAT
* * *
45922315 AATTAATTTATTAGTTACCTTACAATTGTAATGCAAGAATAACTTAGTCATGGTTTTACTTAATC
66 AATTAATTCATTAGTTACCTTACAATTGCAATGAAAGAATAACTTAGTCATGGTTTTACTTAATC
* *
45922380 AAACATTTTACCGAGGCCTATAACAACAAAAAAAAAATTAATAACTCCAG
131 AAACATCTTACCGAGGCCTATAACAACAAAAAAAAAATTAATAACTCAAG
45922430 TAGA
1 TAGA
45922434 CGAAATGCAA
Statistics
Matches: 171, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
180 19 0.11
181 3 0.02
182 149 0.87
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (180 bp):
TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTACAATTTCAATCCGTTTAAAT
AATTAATTCATTAGTTACCTTACAATTGCAATGAAAGAATAACTTAGTCATGGTTTTACTTAATC
AAACATCTTACCGAGGCCTATAACAACAAAAAAAAAATTAATAACTCAAG
Found at i:45924709 original size:54 final size:54
Alignment explanation
Indices: 45924633--45924817 Score: 171
Period size: 54 Copynumber: 3.4 Consensus size: 54
45924623 CACGATATTC
* * * **
45924633 TACTTATGGGATTTAACAAATCTCATGGGTCGTTGATTTATTATCATGACCTTA
1 TACTTAAGGGATTTTACGAATCTCATGGGTCGTTGATTTACGATCATGACCTTA
* * * *
45924687 TACTTAAGGGATTTTATGAATCT--TGTAGTCCGTTGATTTACGATCATGACATTT
1 TACTTAAGGGATTTTACGAATCTCATG-GGT-CGTTGATTTACGATCATGACCTTA
* ** **
45924741 TACTTACA-GGATTTTACGAATCTCA-CGGTCTGTTGATTTACGATCGCGACCTCC
1 TACTTA-AGGGATTTTACGAATCTCATGGGTC-GTTGATTTACGATCATGACCTTA
*
45924795 TACTTACGGGATTTTACGAATCT
1 TACTTAAGGGATTTTACGAATCT
45924818 AGGTGTGTTA
Statistics
Matches: 106, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
52 2 0.02
53 3 0.03
54 100 0.94
55 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (54 bp):
TACTTAAGGGATTTTACGAATCTCATGGGTCGTTGATTTACGATCATGACCTTA
Found at i:45925361 original size:348 final size:348
Alignment explanation
Indices: 45924718--45925506 Score: 900
Period size: 348 Copynumber: 2.3 Consensus size: 348
45924708 CTTGTAGTCC
* * * * * * * * *** *
45924718 GTTGATTTACGATCATGACATTTTACTTACAGGATTTTACGAATCTCACGGTCTGTTGATTTACG
1 GTTGATTTACAATCACGACCTTTTAGTTATAGAATTTTACGAATCTCGCGATCCACTGATTTACA
* * * * *
45924783 ATCGCGACCTCCTACTTACGGGATTTTACGAATCTAGGTGTGTTAAGGAAGAACTTAAAACTAAC
66 ATCACAACTTTCTACTTACGGGATTTTACGAATCTAGGTGTGTTAAGGAAGAACTCAAAACTAAC
* * **
45924848 CTATCTGCCCTTCAAAGCAAGTTATATGCTAGAGATAATGAATATATGTGTGTTGAGGAAGAACT
131 CTATCTACCCTTCAAAGCAAGTTAGATGCTAGAGATAATGAATATATGCATGTTGAGGAAGAACT
* * *
45924913 CAAAACTAACCTTGAAAGAAAGAGGATAGTGGAATTAATTTTGTTACATTACCTTTGTGAAGCAG
196 CAAAACTAACCTTGAAAGAAAGAGAATAGTGGAATCAACTTTGTTACATTACCTTTGTGAAGCAG
* ** * * *
45924978 AAGCTAGTTCTCTTCACCATACATCTGATATGTGGCTTTTATTTGATTGATCTGT-TCAGAAAAA
261 AAGCTAGTTCTCTTCACCATACATCTGAAATGTGGCTTGAAATGGATCGATCT-TCTCAGAAAAA
45925042 CAAGGAAAATATT-GAAA-AGCTTCA
325 CAAGG-AAAT-TTCGAAAGAGCTTCA
* *
45925066 GTTGATTTACAATCACGACC-TTTA-TCTTTCAGAATTTTTCGAATCTCGCGATCCACTGATTTA
1 GTTGATTTACAATCACGACCTTTTAGT-TAT-AGAATTTTACGAATCTCGCGATCCACTGATTTA
* *
45925129 CAATCACAA-TCTTCTACATACGTGATTTTACGAATCTA-GTCGTGTTTAA-GAAGAACTCAAAA
64 CAATCACAACT-TTCTACTTACGGGATTTTACGAATCTAGGT-GTG-TTAAGGAAGAACTCAAAA
* * * * * *
45925191 CTGACC-ACTCTACCTTTCAGAGCAAGTTAGATGTTAGAGATTATGCATATA-GCCATGTTGAGG
126 CTAACCTA-TCTACCCTTCAAAGCAAGTTAGATGCTAGAGATAATGAATATATG-CATGTTGAGG
* *
45925254 AAGAACTCAAAACTGACCTTGAAAGAAGGAGAATAGAT-GAATCAACTTTGTTACAATT-CCTTT
189 AAGAACTCAAAACTAACCTTGAAAGAAAGAGAATAG-TGGAATCAACTTTGTTAC-ATTACCTTT
** * * * *
45925317 GTGTGGCTGAAGCTAGTTCTTTTCACTATACTTCTGAAATGTGGCTTGAAATGGATCGATCTTCT
252 GTGAAGCAGAAGCTAGTTCTCTTCACCATACATCTGAAATGTGGCTTGAAATGGATCGATCTTCT
* *
45925382 CAGAAAAACAAGGAACTTTCTAAAGAGCTTCA
317 CAGAAAAACAAGGAAATTTCGAAAGAGCTTCA
* * *
45925414 GTTGATTTACAATCACGACCTTTTAGTTATAGGATTTTACGAATCTCGCGGTCCACTGATTTACG
1 GTTGATTTACAATCACGACCTTTTAGTTATAGAATTTTACGAATCTCGCGATCCACTGATTTACA
*
45925479 ATCACAACTTTCTACTTACGGGGTTTTA
66 ATCACAACTTTCTACTTACGGGATTTTA
45925507 TTAATCTCGT
Statistics
Matches: 369, Mismatches: 57, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
346 3 0.01
347 16 0.04
348 334 0.91
349 15 0.04
350 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (348 bp):
GTTGATTTACAATCACGACCTTTTAGTTATAGAATTTTACGAATCTCGCGATCCACTGATTTACA
ATCACAACTTTCTACTTACGGGATTTTACGAATCTAGGTGTGTTAAGGAAGAACTCAAAACTAAC
CTATCTACCCTTCAAAGCAAGTTAGATGCTAGAGATAATGAATATATGCATGTTGAGGAAGAACT
CAAAACTAACCTTGAAAGAAAGAGAATAGTGGAATCAACTTTGTTACATTACCTTTGTGAAGCAG
AAGCTAGTTCTCTTCACCATACATCTGAAATGTGGCTTGAAATGGATCGATCTTCTCAGAAAAAC
AAGGAAATTTCGAAAGAGCTTCA
Done.