Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 165 of 208
Found at i:50342207 original size:75 final size:76
Alignment explanation
Indices: 50342119--50342266 Score: 262
Period size: 75 Copynumber: 2.0 Consensus size: 76
50342109 TTTTAATTAA
* *
50342119 GTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTA-GGTTTTTAATTAA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAA
50342183 ATTAGGTTAGG
66 ATTAGGTTAGG
50342194 GTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAA
*
50342259 GTTAGGTT
66 ATTAGGTT
50342267 TTTAATTAAG
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
75 49 0.71
76 20 0.29
ACGTcount: A:0.27, C:0.00, G:0.26, T:0.47
Consensus pattern (76 bp):
GTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAA
ATTAGGTTAGG
Found at i:50342245 original size:18 final size:18
Alignment explanation
Indices: 50342222--50342323 Score: 172
Period size: 18 Copynumber: 5.8 Consensus size: 18
50342212 ATTAGGTTAG
50342222 AGTTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
50342240 AGTTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
50342258 AGTTA-GGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
50342275 AGTTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
*
50342293 AGTTAGGGTTTTTAAATA
1 AGTTAGGGTTTTTAATTA
*
50342311 AATTA-GGTTTTTA
1 AGTTAGGGTTTTTA
50342324 TTACATCAAA
Statistics
Matches: 81, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
17 25 0.31
18 56 0.69
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (18 bp):
AGTTAGGGTTTTTAATTA
Found at i:50342274 original size:35 final size:36
Alignment explanation
Indices: 50342222--50342323 Score: 172
Period size: 35 Copynumber: 2.9 Consensus size: 36
50342212 ATTAGGTTAG
50342222 AGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTA
50342258 AGTTA-GGTTTTTAATTAAGTTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTA
* *
50342293 AGTTAGGGTTTTTAAATAAATTA-GGTTTTTA
1 AGTTAGGGTTTTTAATTAAGTTAGGGTTTTTA
50342324 TTACATCAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 43 0.68
36 20 0.32
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (36 bp):
AGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTA
Found at i:50342300 original size:53 final size:53
Alignment explanation
Indices: 50342222--50342323 Score: 186
Period size: 53 Copynumber: 1.9 Consensus size: 53
50342212 ATTAGGTTAG
* *
50342222 AGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAAGTTAGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAAATAAATTAGGTTTTTAATTA
50342275 AGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAAATAAATTAGGTTTTTA
1 AGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAAATAAATTAGGTTTTTA
50342324 TTACATCAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (53 bp):
AGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAAATAAATTAGGTTTTTAATTA
Found at i:50342371 original size:25 final size:26
Alignment explanation
Indices: 50342319--50342382 Score: 103
Period size: 25 Copynumber: 2.5 Consensus size: 26
50342309 TAAATTAGGT
50342319 TTTTATTACATCAAATAGAACTTCTA
1 TTTTATTACATCAAATAGAACTTCTA
* *
50342345 TTTTATTATATTAAATA-AACTTCTA
1 TTTTATTACATCAAATAGAACTTCTA
50342370 TTTTATTACATCA
1 TTTTATTACATCA
50342383 GATAATAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 19 0.56
26 15 0.44
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (26 bp):
TTTTATTACATCAAATAGAACTTCTA
Found at i:50342818 original size:18 final size:18
Alignment explanation
Indices: 50342791--50342825 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50342781 CGGAAAAGGA
* *
50342791 TACATGTAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
50342809 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
50342826 AAACACACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:50344603 original size:10 final size:10
Alignment explanation
Indices: 50344584--50344649 Score: 51
Period size: 10 Copynumber: 6.5 Consensus size: 10
50344574 GCCATTGATG
*
50344584 AAAATATAAA
1 AAAATTTAAA
50344594 AAAATTTAAA
1 AAAATTTAAA
** *
50344604 ATTATTTTAA
1 AAAATTTAAA
*
50344614 AAAATATAAAA
1 AAAAT-TTAAA
50344625 AAAATTTAAA
1 AAAATTTAAA
** *
50344635 ATTATTTTAA
1 AAAATTTAAA
50344645 AAAAT
1 AAAAT
50344650 GAAATTGAGG
Statistics
Matches: 41, Mismatches: 14, Indels: 2
0.72 0.25 0.04
Matches are distributed among these distances:
10 33 0.80
11 8 0.20
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:50344629 original size:31 final size:30
Alignment explanation
Indices: 50344584--50344649 Score: 123
Period size: 31 Copynumber: 2.2 Consensus size: 30
50344574 GCCATTGATG
50344584 AAAATATAAAAAAATTTAAAATTATTTTAA
1 AAAATATAAAAAAATTTAAAATTATTTTAA
50344614 AAAATATAAAAAAAATTTAAAATTATTTTAA
1 AAAATAT-AAAAAAATTTAAAATTATTTTAA
50344645 AAAAT
1 AAAAT
50344650 GAAATTGAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 7 0.20
31 28 0.80
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (30 bp):
AAAATATAAAAAAATTTAAAATTATTTTAA
Found at i:50344705 original size:51 final size:51
Alignment explanation
Indices: 50344650--50344762 Score: 199
Period size: 51 Copynumber: 2.2 Consensus size: 51
50344640 TTTAAAAAAT
*
50344650 GAAATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
* *
50344701 GAAATTGAGAGGAAATTGAAATTAAATATGGGTTTGAGATAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
50344752 GAAATTGAGAG
1 GAAATTGAGAG
50344763 AATTTTGGAA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (51 bp):
GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
Found at i:50344759 original size:22 final size:22
Alignment explanation
Indices: 50344734--50344784 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
50344724 AAATATGGGT
*
50344734 TTGAGATAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
50344756 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
50344778 TTGAGAG
1 TTGAGAG
50344785 GATTAGAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.31, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:50347182 original size:21 final size:19
Alignment explanation
Indices: 50347149--50347190 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 19
50347139 TTTTGTGTTT
50347149 AATATTTTAATAAATTTGATA
1 AATATTTTAAT-AA-TTGATA
50347170 AATA-TTTATATAATTGATA
1 AATATTTTA-ATAATTGATA
50347189 AA
1 AA
50347191 AATATAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 8 0.40
20 6 0.30
21 6 0.30
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
AATATTTTAATAATTGATA
Found at i:50347459 original size:11 final size:11
Alignment explanation
Indices: 50347443--50347469 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
50347433 GGATTGCGCT
50347443 TCCATTACTTA
1 TCCATTACTTA
50347454 TCCATTACTTA
1 TCCATTACTTA
50347465 TCCAT
1 TCCAT
50347470 GAGCATTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.44
Consensus pattern (11 bp):
TCCATTACTTA
Found at i:50347979 original size:27 final size:27
Alignment explanation
Indices: 50347928--50347979 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
50347918 ACACTAGGAA
* **
50347928 TAAGAAATTTCATTAGATTTTTTAAGT
1 TAAGAAATTTAATTAGATTAATTAAGT
*
50347955 TAAGTAATTTAATTAGATTAATTAA
1 TAAGAAATTTAATTAGATTAATTAA
50347980 TATTTAAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.10, T:0.46
Consensus pattern (27 bp):
TAAGAAATTTAATTAGATTAATTAAGT
Found at i:50350681 original size:19 final size:20
Alignment explanation
Indices: 50350641--50350777 Score: 77
Period size: 19 Copynumber: 6.7 Consensus size: 20
50350631 AATATTATTT
50350641 AAATATTATAACAAATT-TAG
1 AAATATTATAA-AAATTATAG
*
50350661 AAAT-TTATAAAAATTAAAG
1 AAATATTATAAAAATTATAG
* *
50350680 AAA-ACTATAAAAAATACTA-
1 AAATATTATAAAAATTA-TAG
* *
50350699 AAATGTTATAAAAATTTATATTATT
1 AAATATTATAAAAA--T-TA-TA-G
*
50350724 AAATATTATAAAAGATTATTG
1 AAATATTATAAAA-ATTATAG
* * *
50350745 ATATATTATGAAAAAATATAA
1 AAATATTAT-AAAAATTATAG
50350766 AAATA-TATAAAA
1 AAATATTATAAAA
50350778 TTTGTAGATA
Statistics
Matches: 90, Mismatches: 16, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
18 5 0.06
19 28 0.31
20 16 0.18
21 16 0.18
22 5 0.06
23 6 0.07
24 1 0.01
25 12 0.13
26 1 0.01
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.34
Consensus pattern (20 bp):
AAATATTATAAAAATTATAG
Found at i:50350752 original size:21 final size:21
Alignment explanation
Indices: 50350718--50350758 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
50350708 AAAAATTTAT
50350718 ATTATTAAATATTAT-AAAAG
1 ATTATTAAATATTATGAAAAG
*
50350738 ATTATTGATATATTATGAAAA
1 ATTATT-AAATATTATGAAAA
50350759 AATATAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.41
Consensus pattern (21 bp):
ATTATTAAATATTATGAAAAG
Found at i:50355336 original size:28 final size:30
Alignment explanation
Indices: 50355273--50355336 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
50355263 AAAAAAAGCC
*
50355273 ATTTTTTAATAAAATTATGGAAATAAGTTA
1 ATTTTTTAATAAAATTATGGAAATAAGCTA
*
50355303 ATTTTTTAA-AAATTTATGGAAAT-AGACTA
1 ATTTTTTAATAAAATTATGGAAATAAG-CTA
50355332 ATTTT
1 ATTTT
50355337 GGTGTCCATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 2 0.06
29 20 0.65
30 9 0.29
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.45
Consensus pattern (30 bp):
ATTTTTTAATAAAATTATGGAAATAAGCTA
Found at i:50356987 original size:28 final size:28
Alignment explanation
Indices: 50356939--50356992 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
50356929 GTGACAATTT
* *
50356939 AGATGTAGATGCAAAACAAATTAGATAC
1 AGATGTAGATACAAAACAAATCAGATAC
*
50356967 AGATGTAGA-ACAAATCAAAATCAGAT
1 AGATGTAGATACAAAAC-AAATCAGAT
50356993 GCAGTTTCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.52, C:0.11, G:0.17, T:0.20
Consensus pattern (28 bp):
AGATGTAGATACAAAACAAATCAGATAC
Found at i:50358398 original size:27 final size:25
Alignment explanation
Indices: 50358368--50358421 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
50358358 AGCAAATCAA
*
50358368 AAATAAAGAAAATTAAAAAGAAATAAG
1 AAAT-AAGAAAAATAAAAAGAAA-AAG
*
50358395 AAATAAGAAAAATAAAAATAAAAAG
1 AAATAAGAAAAATAAAAAGAAAAAG
50358420 AA
1 AA
50358422 GAAGGAACGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.20
26 16 0.64
27 4 0.16
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.13
Consensus pattern (25 bp):
AAATAAGAAAAATAAAAAGAAAAAG
Found at i:50363209 original size:35 final size:34
Alignment explanation
Indices: 50363128--50363337 Score: 146
Period size: 33 Copynumber: 6.2 Consensus size: 34
50363118 ACATTCGTAG
* * * *
50363128 TGCCATAACCCAGTTATGGTCTTATCAT-CAGAA-
1 TGCCATAGCCCAGCTATGGTCTTA-CATATAAAAC
*
50363161 TGCCATAGTCCAGCTATGGTCTTACATATAAACAC
1 TGCCATAGCCCAGCTATGGTCTTACATATAAA-AC
*
50363196 TGCCATAGCCCAGCTATGGTCTTATATATAAACAC
1 TGCCATAGCCCAGCTATGGTCTTACATATAAA-AC
* * * * * * *
50363231 TGACC-TGGTCCAACTATGGTCTTACGT-TCATAG
1 TG-CCATAGCCCAGCTATGGTCTTACATATAAAAC
* * *
50363264 TGCCAT-GACCTAGTTATGGTCTTATA-ATCAAAA-
1 TGCCATAG-CCCAGCTATGGTCTTACATAT-AAAAC
* *
50363297 TGCTATAGTCCAGCTATGGTCTTACATATAAATAC
1 TGCCATAGCCCAGCTATGGTCTTACATATAAA-AC
50363332 TGCCAT
1 TGCCAT
50363338 GGTCTAACCA
Statistics
Matches: 136, Mismatches: 29, Indels: 22
0.73 0.16 0.12
Matches are distributed among these distances:
32 6 0.04
33 62 0.46
34 9 0.07
35 57 0.42
36 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (34 bp):
TGCCATAGCCCAGCTATGGTCTTACATATAAAAC
Found at i:50363354 original size:101 final size:101
Alignment explanation
Indices: 50363200--50363389 Score: 292
Period size: 101 Copynumber: 1.9 Consensus size: 101
50363190 AAACACTGCC
* * *
50363200 ATAGCCCAGCTATGGTCTTATATATAAACACTGACCTGGTCCAACTATGGTCTTACGTTCATAGT
1 ATAGCCCAGCTATGGTCTTACATATAAACACTGACCTGGTCCAACCATAGTCTTACGTTCATAGT
* *
50363265 GCCATGACCTAGTTATGGTCTTATAATCAAAATGCT
66 GCCATAACCCAGTTATGGTCTTATAATCAAAATGCT
* * *
50363301 ATAGTCCAGCTATGGTCTTACATATAAATACTG-CCATGGTCTAACCATAGTCTTACGTTCATAG
1 ATAGCCCAGCTATGGTCTTACATATAAACACTGACC-TGGTCCAACCATAGTCTTACGTTCATAG
50363365 TGCCATAACCCAGTTATGGTCTTAT
65 TGCCATAACCCAGTTATGGTCTTAT
50363390 CCGTTAATTC
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 2 0.03
101 78 0.98
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.33
Consensus pattern (101 bp):
ATAGCCCAGCTATGGTCTTACATATAAACACTGACCTGGTCCAACCATAGTCTTACGTTCATAGT
GCCATAACCCAGTTATGGTCTTATAATCAAAATGCT
Found at i:50365345 original size:11 final size:11
Alignment explanation
Indices: 50365329--50365415 Score: 56
Period size: 11 Copynumber: 8.1 Consensus size: 11
50365319 TTATATGCTA
50365329 AATAAAATAAT
1 AATAAAATAAT
50365340 AATAAAATAAT
1 AATAAAATAAT
* *
50365351 AA-AATAT-CT
1 AATAAAATAAT
* *
50365360 CATTAAAATATT
1 -AATAAAATAAT
50365372 AATAAAATAAT
1 AATAAAATAAT
* *
50365383 AA-AATAT-CT
1 AATAAAATAAT
* *
50365392 CATTAAAATATT
1 -AATAAAATAAT
50365404 AATAAAATAAT
1 AATAAAATAAT
50365415 A
1 A
50365416 TTTATCTAAT
Statistics
Matches: 56, Mismatches: 14, Indels: 12
0.68 0.17 0.15
Matches are distributed among these distances:
9 2 0.04
10 10 0.18
11 42 0.75
12 2 0.04
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:50365375 original size:32 final size:32
Alignment explanation
Indices: 50365331--50365415 Score: 161
Period size: 32 Copynumber: 2.7 Consensus size: 32
50365321 ATATGCTAAA
*
50365331 TAAAATAATAATAAAATAATAAAATATCTCAT
1 TAAAATATTAATAAAATAATAAAATATCTCAT
50365363 TAAAATATTAATAAAATAATAAAATATCTCAT
1 TAAAATATTAATAAAATAATAAAATATCTCAT
50365395 TAAAATATTAATAAAATAATA
1 TAAAATATTAATAAAATAATA
50365416 TTTATCTAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (32 bp):
TAAAATATTAATAAAATAATAAAATATCTCAT
Found at i:50369670 original size:16 final size:16
Alignment explanation
Indices: 50369651--50369708 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
50369641 AATTGAAAGT
*
50369651 AAAGAAAATGAAAAAC
1 AAAGAAAAAGAAAAAC
*
50369667 AAAGAAAAAGAAAAAG
1 AAAGAAAAAGAAAAAC
* *
50369683 AAATAAGAAACAAGAAAC
1 AAAGAA-AAAGAA-AAAC
50369701 -AAGAAAAA
1 AAAGAAAAA
50369709 AAATATAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
16 22 0.65
17 9 0.26
18 3 0.09
ACGTcount: A:0.78, C:0.05, G:0.14, T:0.03
Consensus pattern (16 bp):
AAAGAAAAAGAAAAAC
Found at i:50369676 original size:6 final size:6
Alignment explanation
Indices: 50369667--50369708 Score: 57
Period size: 7 Copynumber: 6.5 Consensus size: 6
50369657 AATGAAAAAC
50369667 AAAGAA AAAGAA AAAGAA ATAAGAA ACAAGAA ACAAGAA AAA
1 AAAGAA AAAGAA AAAGAA A-AAGAA A-AAGAA A-AAGAA AAA
50369709 AAATATAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
6 15 0.44
7 19 0.56
ACGTcount: A:0.79, C:0.05, G:0.14, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:50369686 original size:27 final size:27
Alignment explanation
Indices: 50369663--50369713 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
50369653 AGAAAATGAA
50369663 AAACAAAGAAA-AAGAAAAAGAAATAAG
1 AAAC-AAGAAACAAGAAAAAGAAATAAG
50369690 AAACAAGAAACAAGAAAAA-AAATA
1 AAACAAGAAACAAGAAAAAGAAATA
50369714 TAAAAGAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.78, C:0.06, G:0.12, T:0.04
Consensus pattern (27 bp):
AAACAAGAAACAAGAAAAAGAAATAAG
Found at i:50369707 original size:26 final size:27
Alignment explanation
Indices: 50369646--50369716 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 27
50369636 AAGCAAATTG
* *
50369646 AAAGTAAAGAAAATGAA-AAACAAAGAA
1 AAAGAAAAAAAAAT-AAGAAACAAAGAA
*
50369673 AAAGAAAAAGAAATAAGAAAC-AAGAA
1 AAAGAAAAAAAAATAAGAAACAAAGAA
50369699 ACAAGAAAAAAAATATAA
1 A-AAGAAAAAAAA-ATAA
50369717 AAGAAGAAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 8 0.22
27 25 0.68
28 4 0.11
ACGTcount: A:0.76, C:0.04, G:0.13, T:0.07
Consensus pattern (27 bp):
AAAGAAAAAAAAATAAGAAACAAAGAA
Found at i:50384539 original size:67 final size:67
Alignment explanation
Indices: 50384463--50384598 Score: 272
Period size: 67 Copynumber: 2.0 Consensus size: 67
50384453 ATGCCTCGAG
50384463 ACATGGCTTCATTATCTCAAGACATAAACTTGCATTTTGCTTGTTTGATCCCAAGATTCGTAACC
1 ACATGGCTTCATTATCTCAAGACATAAACTTGCATTTTGCTTGTTTGATCCCAAGATTCGTAACC
50384528 CA
66 CA
50384530 ACATGGCTTCATTATCTCAAGACATAAACTTGCATTTTGCTTGTTTGATCCCAAGATTCGTAACC
1 ACATGGCTTCATTATCTCAAGACATAAACTTGCATTTTGCTTGTTTGATCCCAAGATTCGTAACC
50384595 CA
66 CA
50384597 AC
1 AC
50384599 TTTGTATTTT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (67 bp):
ACATGGCTTCATTATCTCAAGACATAAACTTGCATTTTGCTTGTTTGATCCCAAGATTCGTAACC
CA
Found at i:50398000 original size:138 final size:136
Alignment explanation
Indices: 50397697--50398210 Score: 529
Period size: 138 Copynumber: 3.8 Consensus size: 136
50397687 CTTGGTATTA
* * * **
50397697 TATAAAGGTTTGTCAGTTTGTGATCGCAACCTCCAAAAATAGCTAGTGGACCTACGCTTCCATAT
1 TATAAAGGTTTGTCA-TTTATGATCACAACCTCCAAAAATAGCTAGTGGACCTACGCTCCCAGCT
* *
50397762 GATATTCCAAGAGCTCGCAAAGTTAAGCTTGCAACTCCAATACAGCT--A-A---ACGCTCCCAG
65 GATATTCCAAGAGCTCGCAAAGTTAAGCTCGCAACTCCAACACAGCTAGAGACCTACGCTCCCAG
50397821 TTGATGT
130 TTGATGT
* ** * * *
50397828 TATAAAGGTTTGCTGATTTATGATTGCAACCTCCAAAAACAACTAATGGACCTACGCTCCCAGCT
1 TATAAAGGTTTG-TCATTTATGATCACAACCTCCAAAAATAGCTAGTGGACCTACGCTCCCAGCT
** * *
50397893 GATATTCTGAGAGCTCGCAAAGTTAAGCTCGCAGCTCCAACACAACTAGCAGACCTACGCTCCCA
65 GATATTCCAAGAGCTCGCAAAGTTAAGCTCGCAACTCCAACACAGCTAG-AGACCTACGCTCCCA
*
50397958 GCTGATGT
129 GTTGATGT
* * * ** *
50397966 TATAAAGGTTTGTCATTTTATGATTACAACCTCCAAAAATAGCTAGCGAACCTATACTCCTAGCT
1 TATAAAGGTTTGTCA-TTTATGATCACAACCTCCAAAAATAGCTAGTGGACCTACGCTCCCAGCT
* * * * * * **
50398031 -AGTATTCCAAGAGTTCGCAGAGTTAAGGTCACAACTCCAACACAGCTAGTGAACCTATGCTTTC
65 GA-TATTCCAAGAGCTCGCAAAGTTAAGCTCGCAACTCCAACACAGCTAGAG-ACCTACGCTCCC
*
50398095 AATTGATGT
128 AGTTGATGT
* * **
50398104 TATAAGGGTTTGCCGATTTATGATCACAACCTTTAAAAATAGCTAGTGGACCTACGCTCCCAGCT
1 TATAAAGGTTTGTC-ATTTATGATCACAACCTCCAAAAATAGCTAGTGGACCTACGCTCCCAGCT
** * * * *
50398169 GATATTCTTAGAGCTCGTAGAGTTAAGCTCGTAGCTCCAACA
65 GATATTCCAAGAGCTCGCAAAGTTAAGCTCGCAACTCCAACA
50398211 TAGGTGGCGG
Statistics
Matches: 312, Mismatches: 58, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
131 94 0.30
132 2 0.01
134 1 0.00
135 1 0.00
137 4 0.01
138 208 0.67
139 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (136 bp):
TATAAAGGTTTGTCATTTATGATCACAACCTCCAAAAATAGCTAGTGGACCTACGCTCCCAGCTG
ATATTCCAAGAGCTCGCAAAGTTAAGCTCGCAACTCCAACACAGCTAGAGACCTACGCTCCCAGT
TGATGT
Found at i:50398365 original size:17 final size:17
Alignment explanation
Indices: 50398345--50398453 Score: 119
Period size: 17 Copynumber: 6.4 Consensus size: 17
50398335 AAGTCTATTC
*
50398345 AAGTTCAGAATTTGCTT
1 AAGTTCAAAATTTGCTT
* *
50398362 AAGTTCAAAAATCGCTT
1 AAGTTCAAAATTTGCTT
** *
50398379 AAGCCCAAAATTTGTTT
1 AAGTTCAAAATTTGCTT
*
50398396 AAGTTCAAAATGTGCTT
1 AAGTTCAAAATTTGCTT
* *
50398413 AAGTTCAAGATTTGATT
1 AAGTTCAAAATTTGCTT
*
50398430 AAATTCAAAATTTGCTT
1 AAGTTCAAAATTTGCTT
*
50398447 GAGTTCA
1 AAGTTCA
50398454 CAAAAAGATA
Statistics
Matches: 72, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 72 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.37
Consensus pattern (17 bp):
AAGTTCAAAATTTGCTT
Found at i:50408298 original size:20 final size:19
Alignment explanation
Indices: 50408269--50408313 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
50408259 ATTAGAATGT
*
50408269 AAAAATTAAATTAAAAACA
1 AAAAATTAAAATAAAAACA
*
50408288 AAAACATTAAAATAAAAATA
1 AAAA-ATTAAAATAAAAACA
50408308 AAAAAT
1 AAAAAT
50408314 GGTTAGATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (19 bp):
AAAAATTAAAATAAAAACA
Found at i:50409959 original size:43 final size:43
Alignment explanation
Indices: 50409895--50409988 Score: 170
Period size: 43 Copynumber: 2.2 Consensus size: 43
50409885 TAGAATATAA
*
50409895 AACATAACTTACCATTTATTTGCATAACATAAAGTAAAAGCAT
1 AACATAACTTACCATTCATTTGCATAACATAAAGTAAAAGCAT
50409938 AACATAACTTACCATTCATTTGCATAACATAAAGTAAAAGCAT
1 AACATAACTTACCATTCATTTGCATAACATAAAGTAAAAGCAT
*
50409981 AATATAAC
1 AACATAAC
50409989 CCAAACCACA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.48, C:0.17, G:0.06, T:0.29
Consensus pattern (43 bp):
AACATAACTTACCATTCATTTGCATAACATAAAGTAAAAGCAT
Found at i:50413187 original size:25 final size:26
Alignment explanation
Indices: 50413098--50413238 Score: 98
Period size: 24 Copynumber: 5.7 Consensus size: 26
50413088 TCCCATTATG
50413098 TGGCTCTTCGTGAGCTTCCCGATTAA
1 TGGCTCTTCGTGAGCTTCCCGATTAA
** * * *
50413124 AAGCTTTTTGTGAGCTTCCTG-TTAA
1 TGGCTCTTCGTGAGCTTCCCGATTAA
* **
50413149 TGGC-CCTCCCGAGCTTCCCGATTAA
1 TGGCTCTTCGTGAGCTTCCCGATTAA
* * *
50413174 TGGCTCTTCG-GAGCTACCTG-TTAT
1 TGGCTCTTCGTGAGCTTCCCGATTAA
* *
50413198 TGGCTC-GCATGAGCTTCCCGATT-A
1 TGGCTCTTCGTGAGCTTCCCGATTAA
* *
50413222 TGGTTCTT-ATGAGCTTC
1 TGGCTCTTCGTGAGCTTC
50413239 TTGTTATACA
Statistics
Matches: 85, Mismatches: 25, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
23 1 0.01
24 41 0.48
25 24 0.28
26 19 0.22
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.35
Consensus pattern (26 bp):
TGGCTCTTCGTGAGCTTCCCGATTAA
Found at i:50413212 original size:49 final size:50
Alignment explanation
Indices: 50413108--50413229 Score: 131
Period size: 49 Copynumber: 2.5 Consensus size: 50
50413098 TGGCTCTTCG
** * * * * *
50413108 TGAGCTTCCCGATTAAAAGCTTTTTGTGAGCTTCCTGTTAATGGCCCTCC
1 TGAGCTTCCCGATTAATGGCTCTTCGTGAGCTACCTGTTAATGGCCCGCA
* * *
50413158 CGAGCTTCCCGATTAATGGCTCTTCG-GAGCTACCTGTTATTGGCTCGCA
1 TGAGCTTCCCGATTAATGGCTCTTCGTGAGCTACCTGTTAATGGCCCGCA
*
50413207 TGAGCTTCCCGATT-ATGGTTCTT
1 TGAGCTTCCCGATTAATGGCTCTT
50413230 ATGAGCTTCT
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 8 0.13
49 31 0.52
50 21 0.35
ACGTcount: A:0.16, C:0.26, G:0.22, T:0.35
Consensus pattern (50 bp):
TGAGCTTCCCGATTAATGGCTCTTCGTGAGCTACCTGTTAATGGCCCGCA
Found at i:50420008 original size:21 final size:20
Alignment explanation
Indices: 50419966--50420015 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
50419956 TTACATTATC
* *
50419966 ACTATTCATGATTTGACTTT
1 ACTATTCATGACTTGACCTT
*
50419986 ACTGTTCATGGACTTGACCTT
1 ACTATTCAT-GACTTGACCTT
50420007 ACTATTCAT
1 ACTATTCAT
50420016 AAGACTGACA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (20 bp):
ACTATTCATGACTTGACCTT
Found at i:50423231 original size:70 final size:70
Alignment explanation
Indices: 50423125--50423967 Score: 243
Period size: 70 Copynumber: 12.2 Consensus size: 70
50423115 GGGAGCATAG
* * *
50423125 GCTCGTGTTAACTGCTTTGGAGGCTGTGATATTAAACCTGCGAGCCTTGAG-ATTACAGCTGGGA
1 GCTCGTGTTAACTGCTTTGGAGGCTGAGATACTAAACCTGCGAGCCTTAAGAATT-CAGCTGGGA
50423189 GCTTGA
65 GCTTGA
* *
50423195 GCTCGTGTTAACTGCTTTGAAGGCTGCAG-TACTAAACCTGCGAGCCTTAAGAATTCAGGTGGGA
1 GCTCGTGTTAACTGCTTTGGAGGCTG-AGATACTAAACCTGCGAGCCTTAAGAATTCAGCTGGGA
50423259 GCTTGA
65 GCTTGA
* * * * * * * * * * *
50423265 ACTCGCGCTAACTGTTTTGGAGGCTGGGACATTGAACCTACAAGCCTTAA-AATTCAAGCTTGGA
1 GCTCGTGTTAACTGCTTTGGAGGCTGAGATACTAAACCTGCGAGCCTTAAGAATTC-AGCTGGGA
*
50423329 GCTTAA
65 GCTTGA
*** ** * *
50423335 GCTCACATTAACTATTTTGGAGGTTGCG--ACT--A-C-GCGA--CTTAAG-ATTACAGCTGGGA
1 GCTCGTGTTAACTGCTTTGGAGGCTGAGATACTAAACCTGCGAGCCTTAAGAATT-CAGCTGGGA
* *
50423391 TCTTAA
65 GCTTGA
*** * * * * * * * * *
50423397 GCT-GACACTAACAGTTTTAGAGGCTGCGGTATTAAACCTACGAGCCTTAAGATTTCAGCTAGGA
1 GCTCG-TGTTAACTGCTTTGGAGGCTGAGATACTAAACCTGCGAGCCTTAAGAATTCAGCTGGGA
50423461 GCTTGA
65 GCTTGA
* * ** ** * * * * * * **
50423467 ACTCGCGCAAACTATTTTGGAGGCTGCGACATTGAACCTACAAGCCTTAAG-ATTCAAGCTTAGA
1 GCTCGTGTTAACTGCTTTGGAGGCTGAGATACTAAACCTGCGAGCCTTAAGAATTC-AGCTGGGA
50423531 GCTTGA
65 GCTTGA
* * * ** * * * * * * * * * *
50423537 ACTCATGCTAACTATTTTGGAGGTTGCGATATTGAATCTACGAACCTTAAGACTACAGCTGGGAT
1 GCTCGTGTTAACTGCTTTGGAGGCTGAGATACTAAACCTGCGAGCCTTAAGAATTCAGCTGGGAG
*
50423602 CTTAA
66 CTTGA
* ** * * * * * * * * * *
50423607 GCTCATACTAA-TAGTTTTAGAGTCT-ACGATATTGAACCTACGAGCCTTAAGATTTTAGTTGAG
1 GCTCGTGTTAACT-GCTTTGGAGGCTGA-GATACTAAACCTGCGAGCCTTAAGAATTCAGCTGGG
50423670 AGCTTGA
64 AGCTTGA
* * ** * ** * * * * *
50423677 GCTCGAGTTAATTTTTTTTGAGGCTGCTATATTGAACCTGTGAGCCTTAA-TATTACAGTTGGGA
1 GCTCGTGTTAACTGCTTTGGAGGCTGAGATACTAAACCTGCGAGCCTTAAGAATT-CAGCTGGGA
*
50423741 GCTTAA
65 GCTTGA
* * * * * * * * * *
50423747 GCTCGAGCTAACT-ATTGTAGAGGCTGAAATATTGAACTTGCAAGCCTTAAG-ATTCTAGTTGGG
1 GCTCGTGTTAACTGCTT-TGGAGGCTGAGATACTAAACCTGCGAGCCTTAAGAATTC-AGCTGGG
50423810 AGCTTGA
64 AGCTTGA
*** ** * * ** * * * * *
50423817 GCTCGACCTAACTATTTTAGAGGCT-ACAGTTTTGAACCTACGAGCCTTAAGATTTTAGCTTGGA
1 GCTCGTGTTAACTGCTTTGGAGGCTGAGA-TACTAAACCTGCGAGCCTTAAGAATTCAGCTGGGA
50423881 GCTTGA
65 GCTTGA
* * ** ** * ** * * *
50423887 GCTCGCGCTAACTTTTTTGGAGGCT-ACGATACTAAACCTGTAAGCATTACTATTTTAGCTAGGA
1 GCTCGTGTTAACTGCTTTGGAGGCTGA-GATACTAAACCTGCGAGCCTTAAGAATTCAGCTGGGA
50423951 GCTTGA
65 GCTTGA
*
50423957 GCTCGCGTTAA
1 GCTCGTGTTAA
50423968 TTGTTTTTGA
Statistics
Matches: 603, Mismatches: 139, Indels: 62
0.75 0.17 0.08
Matches are distributed among these distances:
62 41 0.07
63 1 0.00
64 4 0.01
65 1 0.00
66 2 0.00
67 1 0.00
68 5 0.01
69 17 0.03
70 516 0.86
71 15 0.02
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (70 bp):
GCTCGTGTTAACTGCTTTGGAGGCTGAGATACTAAACCTGCGAGCCTTAAGAATTCAGCTGGGAG
CTTGA
Found at i:50423524 original size:202 final size:208
Alignment explanation
Indices: 50423215--50423661 Score: 602
Period size: 202 Copynumber: 2.2 Consensus size: 208
50423205 ACTGCTTTGA
* * * * * * * *
50423215 AGGCTGCAGTACTAAACCTGCGAGCCTTAAGAATTCAGGTGGGAGCTTGAACTCGCGCTAACTGT
1 AGGCTGCGGTATTAAACCTACGAGCCTTAAGATTTCAGCTAGGAGCTTGAACTCGCGCAAACTAT
* * *
50423280 TTTGGAGGCTGGGACATTGAACCTACAAGCCTTAAAATTCAAGCTTGGAGCTT-AAGCTCACATT
66 TTTGGAGGCTGCGACATTGAACCTACAAGCCTTAAAATTCAAGCTTAGAGCTTGAA-CTCACACT
* * *
50423344 AACTATTTTGGAGGTTGCG-ACT-A-C-GCG-A-CTTAAGATTACAGCTGGGATCTTAAGCTGAC
130 AACTATTTTGGAGGTTGCGAACTAATCTACGAACCTTAAGACTACAGCTGGGATCTTAAGCTCAC
50423403 ACTAACAGTTTTAG
195 ACTAACAGTTTTAG
50423417 AGGCTGCGGTATTAAACCTACGAGCCTTAAGATTTCAGCTAGGAGCTTGAACTCGCGCAAACTAT
1 AGGCTGCGGTATTAAACCTACGAGCCTTAAGATTTCAGCTAGGAGCTTGAACTCGCGCAAACTAT
* **
50423482 TTTGGAGGCTGCGACATTGAACCTACAAGCCTTAAGATTCAAGCTTAGAGCTTGAACTCATGCTA
66 TTTGGAGGCTGCGACATTGAACCTACAAGCCTTAAAATTCAAGCTTAGAGCTTGAACTCACACTA
*
50423547 ACTATTTTGGAGGTTGCGATATTGAATCTACGAACCTTAAGACTACAGCTGGGATCTTAAGCTCA
131 ACTATTTTGGAGGTTGCGA-ACT-AATCTACGAACCTTAAGACTACAGCTGGGATCTTAAGCTCA
* *
50423612 TACTAATAGTTTTAG
194 CACTAACAGTTTTAG
* * * *
50423627 AGTCTACGATATTGAACCTACGAGCCTTAAGATTT
1 AGGCTGCGGTATTAAACCTACGAGCCTTAAGATTT
50423662 TAGTTGAGAG
Statistics
Matches: 212, Mismatches: 24, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
202 131 0.62
203 2 0.01
204 2 0.01
206 1 0.00
207 1 0.00
208 2 0.01
209 1 0.00
210 72 0.34
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (208 bp):
AGGCTGCGGTATTAAACCTACGAGCCTTAAGATTTCAGCTAGGAGCTTGAACTCGCGCAAACTAT
TTTGGAGGCTGCGACATTGAACCTACAAGCCTTAAAATTCAAGCTTAGAGCTTGAACTCACACTA
ACTATTTTGGAGGTTGCGAACTAATCTACGAACCTTAAGACTACAGCTGGGATCTTAAGCTCACA
CTAACAGTTTTAG
Found at i:50423587 original size:140 final size:140
Alignment explanation
Indices: 50423144--50424044 Score: 557
Period size: 140 Copynumber: 6.5 Consensus size: 140
50423134 AACTGCTTTG
* * * * * * * *
50423144 GAGGCTGTGATATTAAACCTGCGAGCCTTGAGATTACAGCTGGGAGCTTGAGCTCGTGTTAACTG
1 GAGGCTGCGATATTGAACCTACGAGCCTTAAGATTACAGCTGGGAGCTTAAGCTCGCGCTAACTA
* * * * * * * * *
50423209 CTTT-GAAGGCTGC-AGTACTAAACCTGCGAGCCTTAAGAATTC-AGGTGGGAGCTTGAACTCGC
66 TTTTAG-AGGCTGCGA-TATTGAACCTACAAGCCTTAAG-ATTCTAGTTGAGAGCTTGAGCTCGA
* *
50423271 GCTAACTGTTTTG
128 GCTAACTATTTTA
* * * * * * **
50423284 GAGGCTGGGACATTGAACCTACAAGCCTTAAAATT-CAAGCTTGGAGCTTAAGCTCACATTAACT
1 GAGGCTGCGATATTGAACCTACGAGCCTTAAGATTAC-AGCTGGGAGCTTAAGCTCGCGCTAACT
* * ** * * * * *
50423348 ATTTTGGAGGTTGC------G-A-CTACGCGACTTAAGATTAC-AGCTGGGATCTTAAGCT-GAC
65 ATTTTAGAGGCTGCGATATTGAACCTACAAGCCTTAAGATT-CTAGTTGAGAGCTTGAGCTCGA-
*
50423403 ACTAAC-AGTTTTA
128 GCTAACTA-TTTTA
* * * * *
50423416 GAGGCTGCGGTATTAAACCTACGAGCCTTAAGATTTCAGCTAGGAGCTTGAA-CTCGCGCAAACT
1 GAGGCTGCGATATTGAACCTACGAGCCTTAAGATTACAGCTGGGAGCTT-AAGCTCGCGCTAACT
* * * *
50423480 ATTTTGGAGGCTGCGACATTGAACCTACAAGCCTTAAGATTCAAGCTT-AGAGCTTGAACTC-AT
65 ATTTTAGAGGCTGCGATATTGAACCTACAAGCCTTAAGATTCTAG-TTGAGAGCTTGAGCTCGA-
*
50423543 GCTAACTATTTTG
128 GCTAACTATTTTA
* * * * * ***
50423556 GAGGTTGCGATATTGAATCTACGAACCTTAAGACTACAGCTGGGATCTTAAGCTCATACTAA-TA
1 GAGGCTGCGATATTGAACCTACGAGCCTTAAGATTACAGCTGGGAGCTTAAGCTCGCGCTAACTA
* * * * *
50423620 GTTTTAGAGTCTACGATATTGAACCTACGAGCCTTAAGATTTTAGTTGAGAGCTTGAGCTCGAGT
66 -TTTTAGAGGCTGCGATATTGAACCTACAAGCCTTAAGATTCTAGTTGAGAGCTTGAGCTCGAGC
* * *
50423685 TAATTTTTTTT
130 TAACTATTTTA
* ** * * *
50423696 GAGGCTGCTATATTGAACCTGTGAGCCTTAATATTACAGTTGGGAGCTTAAGCTCGAGCTAACTA
1 GAGGCTGCGATATTGAACCTACGAGCCTTAAGATTACAGCTGGGAGCTTAAGCTCGCGCTAACTA
* ** * * * *
50423761 TTGTAGAGGCTGAAATATTGAACTTGCAAGCCTTAAGATTCTAGTTGGGAGCTTGAGCTCGACCT
66 TTTTAGAGGCTGCGATATTGAACCTACAAGCCTTAAGATTCTAGTTGAGAGCTTGAGCTCGAGCT
50423826 AACTATTTTA
131 AACTATTTTA
* * ** * *
50423836 GAGGCTAC-AGTTTTGAACCTACGAGCCTTAAGATTTTAGCTTGGAGCTTGAGCTCGCGCTAACT
1 GAGGCTGCGA-TATTGAACCTACGAGCCTTAAGATTACAGCTGGGAGCTTAAGCTCGCGCTAACT
* * * * * ** * ** * * *
50423900 TTTTTGGAGGCTACGATACTAAACCTGTAAGCATTACTATTTTAGCT-AGGAGCTTGAGCTCGCG
65 ATTTTAGAGGCTGCGATATTGAACCTACAAGCCTTAAGATTCTAGTTGA-GAGCTTGAGCTCGAG
* * * *
50423964 TTAATTGTTTTT
129 CTAACTATTTTA
* * * * * * * * * *
50423976 GAGGATGCTATATTGAACCTACAAGCCTTAATATTACAGCTGAGACCTTGAGCTCACACTAACTT
1 GAGGCTGCGATATTGAACCTACGAGCCTTAAGATTACAGCTGGGAGCTTAAGCTCGCGCTAACTA
50424041 TTTT
66 TTTT
50424045 GGGAGGGATC
Statistics
Matches: 586, Mismatches: 148, Indels: 54
0.74 0.19 0.07
Matches are distributed among these distances:
131 4 0.01
132 95 0.16
133 4 0.01
138 1 0.00
139 10 0.02
140 465 0.79
141 7 0.01
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (140 bp):
GAGGCTGCGATATTGAACCTACGAGCCTTAAGATTACAGCTGGGAGCTTAAGCTCGCGCTAACTA
TTTTAGAGGCTGCGATATTGAACCTACAAGCCTTAAGATTCTAGTTGAGAGCTTGAGCTCGAGCT
AACTATTTTA
Found at i:50423676 original size:210 final size:205
Alignment explanation
Indices: 50423229--50423911 Score: 674
Period size: 210 Copynumber: 3.3 Consensus size: 205
50423219 TGCAGTACTA
* * * * * *
50423229 AACCTGCGAGCCTTAAGAATTCAGGTGGGAGCTTGAACTCGCGCTAACTGTTTTGGAGGCTGGGA
1 AACCTACGAGCCTTAAGATTTCAGTTGAGAGCTTGAACTCGCGCTAACTTTTTTGGAGGCTGCGA
50423294 CATTGAACCTACAAGCCTTAAAATTCAAGCTTGGAGCTTAAGCTCA-CATTAACTATTTTGGAGG
66 CATTGAACCTACAAGCCTTAAAATTCAAGCTTGGAGCTTAAGCTCAGC--TAACTATTTTGGAGG
* * * *
50423358 TTGCG--ACT--ACGCG-A-CTTAAGATTACAGCTGGGATCTTAAGCTGACACTAACAGTTTTAG
129 TTGCGATATTGAACTCGAACCTTAAGA-TACAGCTGGGATCTTAAGCTCA-ACTAATAGTTTTAG
* * *
50423417 AGGCTGCGGTATTA
192 AGGCTACGATATTG
* * *
50423431 AACCTACGAGCCTTAAGATTTCAGCT-AGGAGCTTGAACTCGCGCAAACTATTTTGGAGGCTGCG
1 AACCTACGAGCCTTAAGATTTCAGTTGA-GAGCTTGAACTCGCGCTAACTTTTTTGGAGGCTGCG
* *
50423495 ACATTGAACCTACAAGCCTTAAGATTCAAGCTTAGAGCTTGAA-CTCATGCTAACTATTTTGGAG
65 ACATTGAACCTACAAGCCTTAAAATTCAAGCTTGGAGCTT-AAGCTCA-GCTAACTATTTTGGAG
50423559 GTTGCGATATTGAATCTACGAACCTTAAGACTACAGCTGGGATCTTAAGCTCATACTAATAGTTT
128 GTTGCGATATTGAA-CT-CGAACCTTAAGA-TACAGCTGGGATCTTAAGCTCA-ACTAATAGTTT
*
50423624 TAGAGTCTACGATATTG
189 TAGAGGCTACGATATTG
* * * * * * *
50423641 AACCTACGAGCCTTAAGATTTTAGTTGAGAGCTTGAGCTCGAGTTAATTTTTTTTGAGGCTGCTA
1 AACCTACGAGCCTTAAGATTTCAGTTGAGAGCTTGAACTCGCGCTAACTTTTTTGGAGGCTGCGA
* *** * * *
50423706 TATTGAACCTGTGAGCCTTAATATT-ACAG-TTGGGAGCTTAAGCTCGAGCTAACTATTGTAGAG
66 CATTGAACCTACAAGCCTTAAAATTCA-AGCTT-GGAGCTTAAGCTC-AGCTAACTATTTTGGAG
* ** * * * * * *
50423769 GCTGAAATATTGAACTTGCAAGCCTTAAGATTCTAGTTGGGAGCTTGAGCTCGACCTAACTA-TT
128 GTTGCGATATTGAACTCG-AA-CCTTAAGATAC-AGCTGGGATCTTAAGCTC-AACTAA-TAGTT
*
50423833 TTAGAGGCTAC-AGTTTTG
188 TTAGAGGCTACGA-TATTG
* *
50423851 AACCTACGAGCCTTAAGATTTTAGCTTG-GAGCTTGAGCTCGCGCTAACTTTTTTGGAGGCT
1 AACCTACGAGCCTTAAGATTTCAG-TTGAGAGCTTGAACTCGCGCTAACTTTTTTGGAGGCT
50423912 ACGATACTAA
Statistics
Matches: 405, Mismatches: 52, Indels: 40
0.81 0.10 0.08
Matches are distributed among these distances:
202 118 0.29
203 2 0.00
204 3 0.01
206 1 0.00
207 1 0.00
208 3 0.01
209 13 0.03
210 256 0.63
211 8 0.02
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31
Consensus pattern (205 bp):
AACCTACGAGCCTTAAGATTTCAGTTGAGAGCTTGAACTCGCGCTAACTTTTTTGGAGGCTGCGA
CATTGAACCTACAAGCCTTAAAATTCAAGCTTGGAGCTTAAGCTCAGCTAACTATTTTGGAGGTT
GCGATATTGAACTCGAACCTTAAGATACAGCTGGGATCTTAAGCTCAACTAATAGTTTTAGAGGC
TACGATATTG
Found at i:50423991 original size:210 final size:209
Alignment explanation
Indices: 50423229--50424039 Score: 647
Period size: 210 Copynumber: 3.9 Consensus size: 209
50423219 TGCAGTACTA
* * * * * * * *
50423229 AACCTGCGAGCCTTAAGAATTCAGGTGGGAGCTTGAACTCGCGCTAACTGTTTTGGAGGCTGGGA
1 AACCTACGAGCCTTAAGATTTTAGCTTGGAGCTTGAGCTCGCGCTAACTTTTTTGGAGGCTGCGA
* ** * * * * *
50423294 CATTGAACCTACAAGCCTTAAAATTCAAGCTTGGAGCTTAAGCTC-A-CATTAACTATTTTGGAG
66 TATTGAACCTGTAAGCCTTAATATTAAAGCTAGGAGCTTGAGCTCGAGC--TAACTATTTTAGAG
* ** *
50423357 GTTGC------G-AC-TACGCGACTTAAGATTACAGCTGGGATCTTAAGCT-GACACTAAC-AGT
129 GATGCAATATTGAACTTACAAGCCTTAAGATT-CAGCTGGGATCTTAAGCTCGAC-CTAACTAGT
* *
50423412 TTTAGAGGCTGCGGTATTA
192 TTTAGAGGCTAC-GTATTG
* * * * *
50423431 AACCTACGAGCCTTAAGATTTCAGCTAGGAGCTTGAACTCGCGCAAACTATTTTGGAGGCTGCGA
1 AACCTACGAGCCTTAAGATTTTAGCTTGGAGCTTGAGCTCGCGCTAACTTTTTTGGAGGCTGCGA
* ** * * * *
50423496 CATTGAACCTACAAGCCTTAAGATTCAAGCTTA-GAGCTTGAACTC-ATGCTAACTATTTTGGAG
66 TATTGAACCTGTAAGCCTTAATATTAAAGC-TAGGAGCTTGAGCTCGA-GCTAACTATTTTAGAG
* * * *
50423559 GTTGCGATATTGAA-TCTACGAA-CCTTAAGACTACAGCTGGGATCTTAAGCTC-ATACTAA-TA
129 GATGCAATATTGAACT-TAC-AAGCCTTAAGA-TTCAGCTGGGATCTTAAGCTCGA-CCTAACTA
*
50423620 GTTTTAGAGTCTACGATATTG
190 GTTTTAGAGGCTACG-TATTG
* * * * *
50423641 AACCTACGAGCCTTAAGATTTTAG-TTGAGAGCTTGAGCTCGAGTTAATTTTTTTTGAGGCTGCT
1 AACCTACGAGCCTTAAGATTTTAGCTTG-GAGCTTGAGCTCGCGCTAACTTTTTTGGAGGCTGCG
* * * * * *
50423705 ATATTGAACCTGTGAGCCTTAATATTACAGTTGGGAGCTTAAGCTCGAGCTAACTATTGTAGAGG
65 ATATTGAACCTGTAAGCCTTAATATTAAAGCTAGGAGCTTGAGCTCGAGCTAACTATTTTAGAGG
* * * * * *
50423770 CTGAAATATTGAACTTGCAAGCCTTAAGATTCTAGTTGGGAGCTTGAGCTCGACCTAACTA-TTT
130 ATGCAATATTGAACTTACAAGCCTTAAGATTC-AGCTGGGATCTTAAGCTCGACCTAACTAGTTT
*
50423834 TAGAGGCTACAGTTTTG
194 TAGAGGCTAC-GTATTG
*
50423851 AACCTACGAGCCTTAAGATTTTAGCTTGGAGCTTGAGCTCGCGCTAACTTTTTTGGAGGCTACGA
1 AACCTACGAGCCTTAAGATTTTAGCTTGGAGCTTGAGCTCGCGCTAACTTTTTTGGAGGCTGCGA
* * * * ** * * * * *
50423916 TACTAAACCTGTAAGCATTACTATTTTAGCTAGGAGCTTGAGCTCGCGTTAATTGTTTTTGAGGA
66 TATTGAACCTGTAAGCCTTAATATTAAAGCTAGGAGCTTGAGCTCGAGCTAACTATTTTAGAGGA
* * * * * *
50423981 TGCTATATTGAACCTACAAGCCTTAATATTACAGCTGAGACCTTGAGCTC-ACACTAACT
131 TGCAATATTGAACTTACAAGCCTTAAGATT-CAGCTGGGATCTTAAGCTCGAC-CTAACT
50424040 TTTTTGGGAG
Statistics
Matches: 495, Mismatches: 84, Indels: 52
0.78 0.13 0.08
Matches are distributed among these distances:
202 117 0.24
203 1 0.00
204 1 0.00
208 1 0.00
209 11 0.02
210 353 0.71
211 11 0.02
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (209 bp):
AACCTACGAGCCTTAAGATTTTAGCTTGGAGCTTGAGCTCGCGCTAACTTTTTTGGAGGCTGCGA
TATTGAACCTGTAAGCCTTAATATTAAAGCTAGGAGCTTGAGCTCGAGCTAACTATTTTAGAGGA
TGCAATATTGAACTTACAAGCCTTAAGATTCAGCTGGGATCTTAAGCTCGACCTAACTAGTTTTA
GAGGCTACGTATTG
Found at i:50424026 original size:70 final size:70
Alignment explanation
Indices: 50423411--50424030 Score: 387
Period size: 70 Copynumber: 8.9 Consensus size: 70
50423401 ACACTAACAG
** * * *
50423411 TTTTAGAGGCTGCGGTATTAAACCTACGAGCCTTAAGATTTCAGCT-AGGAGCTTGAACTCGCGC
1 TTTTAGAGGCTGCTATATTGAACCTACAAGCCTTAAGATTTCAGCTGA-GAGCTTGAGCTCGCGC
* *
50423475 AAACTA
65 TAATTA
* * * * * **
50423481 TTTTGGAGGCTGCGACATTGAACCTACAAGCCTTAAGA-TTCAAGCTTAGAGCTTGAACTCATGC
1 TTTTAGAGGCTGCTATATTGAACCTACAAGCCTTAAGATTTC-AGCTGAGAGCTTGAGCTCGCGC
*
50423545 TAACTA
65 TAATTA
* * * * * * * * * ***
50423551 TTTTGGAGGTTGCGATATTGAATCTACGAA-CCTTAAGACTACAGCTGGGATCTTAAGCTCATAC
1 TTTTAGAGGCTGCTATATTGAACCTAC-AAGCCTTAAGATTTCAGCTGAGAGCTTGAGCTCGCGC
50423615 TAA-TA
65 TAATTA
* * * * * * * *
50423620 GTTTTAGAGTCTACGATATTGAACCTACGAGCCTTAAGATTTTAGTTGAGAGCTTGAGCTCGAGT
1 -TTTTAGAGGCTGCTATATTGAACCTACAAGCCTTAAGATTTCAGCTGAGAGCTTGAGCTCGCGC
*
50423685 TAATTT
65 TAATTA
* *** * * * * * *
50423691 TTTTTGAGGCTGCTATATTGAACCTGTGAGCCTTAATATTACAGTTGGGAGCTTAAGCTCGAGCT
1 TTTTAGAGGCTGCTATATTGAACCTACAAGCCTTAAGATTTCAGCTGAGAGCTTGAGCTCGCGCT
*
50423756 AACTA
66 AATTA
* ** * * * *
50423761 TTGTAGAGGCTGAAATATTGAACTTGCAAGCCTTAAGA-TTCTAGTTGGGAGCTTGAGCTCGAC-
1 TTTTAGAGGCTGCTATATTGAACCTACAAGCCTTAAGATTTC-AGCTGAGAGCTTGAGCTCG-CG
*
50423824 CTAACTA
64 CTAATTA
* * * *
50423831 TTTTAGAGGCTAC-AGTTTTGAACCTACGAGCCTTAAGATTTTAGCTTG-GAGCTTGAGCTCGCG
1 TTTTAGAGGCTGCTA-TATTGAACCTACAAGCCTTAAGATTTCAGC-TGAGAGCTTGAGCTCGCG
50423894 CTAACTT-
64 CTAA-TTA
* * * * * ** * ** * *
50423901 TTTTGGAGGCTACGATACTAAACCTGTAAGCATTACTATTTTAGCT-AGGAGCTTGAGCTCGCGT
1 TTTTAGAGGCTGCTATATTGAACCTACAAGCCTTAAGATTTCAGCTGA-GAGCTTGAGCTCGCGC
*
50423965 TAATTG
65 TAATTA
* * * * *
50423971 TTTTTGAGGATGCTATATTGAACCTACAAGCCTTAATATTACAGCTGAGACCTTGAGCTC
1 TTTTAGAGGCTGCTATATTGAACCTACAAGCCTTAAGATTTCAGCTGAGAGCTTGAGCTC
50424031 ACACTAACTT
Statistics
Matches: 436, Mismatches: 95, Indels: 38
0.77 0.17 0.07
Matches are distributed among these distances:
69 13 0.03
70 410 0.94
71 13 0.03
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.32
Consensus pattern (70 bp):
TTTTAGAGGCTGCTATATTGAACCTACAAGCCTTAAGATTTCAGCTGAGAGCTTGAGCTCGCGCT
AATTA
Found at i:50426890 original size:20 final size:20
Alignment explanation
Indices: 50426853--50426890 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
50426843 ACAGCAGCAG
*
50426853 AAAATAGAATAAACAATAGA
1 AAAATAGAATAAAAAATAGA
50426873 AAAATAGTAA-AAAAAATA
1 AAAATAG-AATAAAAAATA
50426891 AGAATGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (20 bp):
AAAATAGAATAAAAAATAGA
Found at i:50440458 original size:33 final size:33
Alignment explanation
Indices: 50440417--50440487 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
50440407 AGTTGTATTT
50440417 TTAATTAATTACGCCTTTAGACCGATTTTAAAA
1 TTAATTAATTACGCCTTTAGACCGATTTTAAAA
* * *
50440450 TTAATTAATTAGGCCTTTAGGCCGGTTTTAAAA
1 TTAATTAATTACGCCTTTAGACCGATTTTAAAA
50440483 TTAAT
1 TTAAT
50440488 CACAGAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.41
Consensus pattern (33 bp):
TTAATTAATTACGCCTTTAGACCGATTTTAAAA
Found at i:50450196 original size:45 final size:45
Alignment explanation
Indices: 50450128--50450214 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
50450118 TCTTGATTGA
* * * *
50450128 GAAAAGAAAAAGACCATGATTGAAATATATCATGGTATTATACTT
1 GAAAAAAAAAAGACCATGATTGAAAGATACCATGGCATTATACTT
*
50450173 GAAAAAAAAAAGACCATGGTTGAAAGATACCATGGCATTATA
1 GAAAAAAAAAAGACCATGATTGAAAGATACCATGGCATTATA
50450215 TTTGGTATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.24
Consensus pattern (45 bp):
GAAAAAAAAAAGACCATGATTGAAAGATACCATGGCATTATACTT
Found at i:50451398 original size:23 final size:23
Alignment explanation
Indices: 50451372--50451424 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
50451362 TTACGCTTAA
50451372 TGAGTGAACTTGAAATGTTGAAT
1 TGAGTGAACTTGAAATGTTGAAT
* * **
50451395 TGAGTCAAGTTGATGTGTTGAAT
1 TGAGTGAACTTGAAATGTTGAAT
50451418 TGTAGTG
1 TG-AGTG
50451425 TCAATTGATG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 21 0.88
24 3 0.12
ACGTcount: A:0.28, C:0.04, G:0.30, T:0.38
Consensus pattern (23 bp):
TGAGTGAACTTGAAATGTTGAAT
Found at i:50452574 original size:28 final size:28
Alignment explanation
Indices: 50452481--50452576 Score: 77
Period size: 28 Copynumber: 3.4 Consensus size: 28
50452471 GTAACTTAGC
* *
50452481 CTTGACAGATTTCCACT-TATAATATAGT
1 CTTGACAGACTTCCA-TATATAAGATAGT
* * * *
50452509 TTTGACATACTTTCACATATAAGATAGT
1 CTTGACAGACTTCCATATATAAGATAGT
** **
50452537 CCCGATGGACTTCCATATATAAGATAGT
1 CTTGACAGACTTCCATATATAAGATAGT
*
50452565 CTTGACGGACTT
1 CTTGACAGACTT
50452577 TTACATCTTT
Statistics
Matches: 50, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (28 bp):
CTTGACAGACTTCCATATATAAGATAGT
Found at i:50454152 original size:2 final size:2
Alignment explanation
Indices: 50454147--50454195 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
50454137 GTTGTATATA
50454147 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
50454189 TG TG TG T
1 TG TG TG T
50454196 TTCCTGAAGC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:50454782 original size:25 final size:26
Alignment explanation
Indices: 50454754--50454811 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
50454744 AAAATCCTAT
*
50454754 GTGGCGTA-TTACTTAGGAAGCCTTA
1 GTGGCGAAGTTACTTAGGAAGCCTTA
* * *
50454779 GTGGCGAAGTTATTTGGGAAGCCTTT
1 GTGGCGAAGTTACTTAGGAAGCCTTA
50454805 GTGGCGA
1 GTGGCGA
50454812 TTTATCTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.21, C:0.14, G:0.34, T:0.31
Consensus pattern (26 bp):
GTGGCGAAGTTACTTAGGAAGCCTTA
Found at i:50460529 original size:17 final size:17
Alignment explanation
Indices: 50460507--50460539 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
50460497 AATTAATATA
50460507 ATTATTAATTTGTTAAT
1 ATTATTAATTTGTTAAT
*
50460524 ATTATTAATTTTTTAA
1 ATTATTAATTTGTTAA
50460540 ATTTTATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
ATTATTAATTTGTTAAT
Found at i:50462702 original size:72 final size:75
Alignment explanation
Indices: 50462618--50462799 Score: 219
Period size: 75 Copynumber: 2.5 Consensus size: 75
50462608 TTGTTTATTT
* * *
50462618 TTTTTACATCAATATTATACTTATTTACAATTTACGAAGAAAAT-GAAA-AA-AAACTAT-TTGT
1 TTTTTACATCAATAATATACTTATTTAAAATTTAC-AAAAAAATGGAAACAATAAACTATATTGT
*
50462679 ATTGCATTGTA
65 ATTACATTGTA
****
50462690 TTTTTACATCAATAATATACTTATTTAAAATTTACAAAAAAATGGAAACAATTTTTTATATTGTA
1 TTTTTACATCAATAATATACTTATTTAAAATTTACAAAAAAATGGAAACAATAAACTATATTGTA
*
50462755 TTATATTGTA
66 TTACATTGTA
* * *
50462765 TTTTTACATAAATAATATACCTATTTAGAATTTAC
1 TTTTTACATCAATAATATACTTATTTAAAATTTAC
50462800 CCAAAAGTGG
Statistics
Matches: 94, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
71 7 0.07
72 37 0.39
73 2 0.02
74 3 0.03
75 45 0.48
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.43
Consensus pattern (75 bp):
TTTTTACATCAATAATATACTTATTTAAAATTTACAAAAAAATGGAAACAATAAACTATATTGTA
TTACATTGTA
Found at i:50464333 original size:85 final size:85
Alignment explanation
Indices: 50464179--50464348 Score: 205
Period size: 85 Copynumber: 2.0 Consensus size: 85
50464169 TAGATCACAC
* * * *
50464179 TTTCACCATAGGTAAGATAATGTCAGAGATCATGCCAGAATCCAATTTCGAATGATCTTATAACA
1 TTTCACCATACGTAAGACAATGTCAGAGATCAAGCCAGAATCCAATTTAGAATGATCTTATAACA
*
50464244 TACCTGCAACAACACAAGTA
66 TACCTACAACAACACAAGTA
* ** * * * * **
50464264 TTTCACCATACGTAAGACAATGTCAGAGGTCAAGTTAGAATCCAATTTAGGATGCTCTTGTGATG
1 TTTCACCATACGTAAGACAATGTCAGAGATCAAGCCAGAATCCAATTTAGAATGATCTTATAACA
*
50464329 TACCTACAATAACACAAGTA
66 TACCTACAACAACACAAGTA
50464349 CAAGAAGCAT
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
85 70 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (85 bp):
TTTCACCATACGTAAGACAATGTCAGAGATCAAGCCAGAATCCAATTTAGAATGATCTTATAACA
TACCTACAACAACACAAGTA
Found at i:50468202 original size:23 final size:22
Alignment explanation
Indices: 50468171--50468219 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
50468161 TTTCTTGCAT
50468171 GTTTATTTTTCATTTTTAGTTTA
1 GTTTATTTTTCATTTTTA-TTTA
* * *
50468194 GTTTGTTTTTTATTTTTATTTG
1 GTTTATTTTTCATTTTTATTTA
50468216 GTTT
1 GTTT
50468220 TTATTTAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.12, C:0.02, G:0.12, T:0.73
Consensus pattern (22 bp):
GTTTATTTTTCATTTTTATTTA
Found at i:50468205 original size:17 final size:16
Alignment explanation
Indices: 50468183--50468231 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
50468173 TTATTTTTCA
*
50468183 TTTTTAGTTTAGTTTGT
1 TTTTTA-TTTAGTTTGG
50468200 TTTTTATTTTTA-TTTGG
1 TTTTTA--TTTAGTTTGG
50468217 TTTTTATTTAGTTTG
1 TTTTTATTTAGTTTG
50468232 CTCGAGGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 4 0.14
16 4 0.14
17 16 0.57
18 4 0.14
ACGTcount: A:0.12, C:0.00, G:0.14, T:0.73
Consensus pattern (16 bp):
TTTTTATTTAGTTTGG
Found at i:50468222 original size:11 final size:11
Alignment explanation
Indices: 50468183--50468230 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
50468173 TTATTTTTCA
50468183 TTTTTAGTTTAG
1 TTTTTA-TTTAG
*
50468195 TTTGTTTTTTA-
1 TTT-TTATTTAG
*
50468206 TTTTTATTTGG
1 TTTTTATTTAG
50468217 TTTTTATTTAG
1 TTTTTATTTAG
50468228 TTT
1 TTT
50468231 GCTCGAGGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
10 5 0.17
11 16 0.53
12 7 0.23
13 2 0.07
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.75
Consensus pattern (11 bp):
TTTTTATTTAG
Found at i:50473390 original size:40 final size:40
Alignment explanation
Indices: 50473344--50473542 Score: 247
Period size: 40 Copynumber: 5.0 Consensus size: 40
50473334 ACTATTGTAT
** * *
50473344 GAATGCACATTTGTGCCCCTATTTTTACTTCGGTACCCCA
1 GAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCA
*
50473384 GAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCT
1 GAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCA
* * * *
50473424 GAATGCAAATACGTTCCCCTGTTTGTACTTTGGTACCCCT
1 GAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCA
* ** * * *
50473464 GAATGCACATACATGTTCCTTTTTGTACTTCAGTACCCTTA
1 GAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC-CA
50473505 -AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
1 GAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
50473543 TGAACACTTA
Statistics
Matches: 134, Mismatches: 24, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.34
Consensus pattern (40 bp):
GAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCA
Found at i:50473424 original size:20 final size:20
Alignment explanation
Indices: 50473399--50473464 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
50473389 CACATACGTG
50473399 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
** * * * *
50473419 CCCCTGAATGCAAATAC-GTT
1 CCCCTGTTTG-TACTTCGGTA
*
50473439 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTCGGTA
50473459 CCCCTG
1 CCCCTG
50473465 AATGCACATA
Statistics
Matches: 31, Mismatches: 13, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
19 2 0.06
20 26 0.84
21 3 0.10
ACGTcount: A:0.15, C:0.32, G:0.18, T:0.35
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:50473582 original size:80 final size:79
Alignment explanation
Indices: 50473345--50473582 Score: 248
Period size: 80 Copynumber: 3.0 Consensus size: 79
50473335 CTATTGTATG
** * * * * * *
50473345 AATGCACATTTGTGCCCCTATTTTTACTTCGGTACCCCAGAATGCACATACGTGCCCCTGTTTGT
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAA-GCACATACATGTCCTTGTTTGT
* *
50473410 ACTTCGGTACCCCTG
65 ACTTCGGTACCCTTA
* * *
50473425 AATGCAAATACGTTCCCCTGTTTGTACTTTGGTACCCCTGAATGCACATACATGTTCCTT-TTTG
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAA-GCACATACATG-TCCTTGTTTG
*
50473489 TACTTCAGTACCCTTA
64 TACTTCGGTACCCTTA
* *
50473505 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAA-CACTTATGCATG-CCTTGTTTA
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAAGCAC--ATACATGTCCTTGTTTG
*
50473568 TACTTTGGTAACCCT
64 TACTTCGGT-ACCCT
50473583 GAATCAAAGT
Statistics
Matches: 132, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
78 7 0.05
79 10 0.08
80 112 0.85
81 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.35
Consensus pattern (79 bp):
AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAAGCACATACATGTCCTTGTTTGTA
CTTCGGTACCCTTA
Found at i:50479827 original size:85 final size:85
Alignment explanation
Indices: 50479684--50479856 Score: 319
Period size: 85 Copynumber: 2.0 Consensus size: 85
50479674 CATTAGGAAC
*
50479684 AAGAGCCCTACCTGTTGACTCACCCCGTTCAACTGATAATGAAAAGGACCAGTGACGAGGACGTA
1 AAGAGCCCTACCTGTTGACTCACCCCGTTCAACTGATAACGAAAAGGACCAGTGACGAGGACGTA
50479749 GCTTGCAAATTGTATAGAAT
66 GCTTGCAAATTGTATAGAAT
*
50479769 AAGAGCCCTACCTGTTGACTCACCTCGTTCAACTGATAACGAAAAGGACCAGTGACGAGGACGTA
1 AAGAGCCCTACCTGTTGACTCACCCCGTTCAACTGATAACGAAAAGGACCAGTGACGAGGACGTA
*
50479834 GCTTGCAAATTGTGTAGAAT
66 GCTTGCAAATTGTATAGAAT
50479854 AAG
1 AAG
50479857 TTAATGGGCT
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (85 bp):
AAGAGCCCTACCTGTTGACTCACCCCGTTCAACTGATAACGAAAAGGACCAGTGACGAGGACGTA
GCTTGCAAATTGTATAGAAT
Found at i:50481209 original size:2 final size:2
Alignment explanation
Indices: 50481202--50481234 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
50481192 AGTTATTTTA
50481202 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50481235 AACATACCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50495593 original size:25 final size:26
Alignment explanation
Indices: 50495565--50495613 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
50495555 ATTTGAAAAT
50495565 AATATTTTATATTAA-ATTATATTAA
1 AATATTTTATATTAAGATTATATTAA
*
50495590 AATATTTTATATTAAGATTTTATT
1 AATATTTTATATTAAGATTATATT
50495614 TTTATATCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (26 bp):
AATATTTTATATTAAGATTATATTAA
Found at i:50499149 original size:18 final size:18
Alignment explanation
Indices: 50499118--50499157 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
50499108 TGATCCACAT
* *
50499118 GGCCATAGTTTGTTACAC
1 GGCCACAGTCTGTTACAC
*
50499136 GGCCACAGTCTGTTACAT
1 GGCCACAGTCTGTTACAC
50499154 GGCC
1 GGCC
50499158 TAGTCACACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.28
Consensus pattern (18 bp):
GGCCACAGTCTGTTACAC
Found at i:50499223 original size:50 final size:50
Alignment explanation
Indices: 50499148--50499244 Score: 167
Period size: 50 Copynumber: 1.9 Consensus size: 50
50499138 CCACAGTCTG
* *
50499148 TTACATGGCCTAGTCACACAGCCCAAGGCTTTTTATAGAGCCGTGTGCTA
1 TTACATGGCCTAGTCACACAGCCCAAGGCTTTTCACAGAGCCGTGTGCTA
*
50499198 TTACATGGCCTAGTCACACAGCCCAAGGCTTTTCACATAGCCGTGTG
1 TTACATGGCCTAGTCACACAGCCCAAGGCTTTTCACAGAGCCGTGTG
50499245 TCCCCTAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
TTACATGGCCTAGTCACACAGCCCAAGGCTTTTCACAGAGCCGTGTGCTA
Found at i:50501879 original size:19 final size:17
Alignment explanation
Indices: 50501844--50501882 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
50501834 CATAATACTA
*
50501844 TATATAATATATATTAT
1 TATATAATACATATTAT
50501861 TATATAATTACATATTTAT
1 TATATAA-TACATA-TTAT
50501880 TAT
1 TAT
50501883 TTTATTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 5 0.26
19 7 0.37
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATAATACATATTAT
Found at i:50501939 original size:93 final size:93
Alignment explanation
Indices: 50501766--50501939 Score: 244
Period size: 93 Copynumber: 1.9 Consensus size: 93
50501756 ATACAATTCC
* * * **
50501766 ATTATATAGTAACATATTTATTAATTTATTTATATAAATAAAGGAATTATTAATTAAAATATTTT
1 ATTATATAATAACATATTTATTAATTTATTTATATAAATAAAAGAATTATTAATTAAAAGATGAT
*
50501831 TAACATAATACTATATATAATATATATT
66 TAACATAATAATATATATAATATATATT
* *
50501859 ATTATATAATTACATATTTATTATTTTATTTATATAAATAAAAGAATTATTAATTAAAAAGATGG
1 ATTATATAATAACATATTTATTAATTTATTTATATAAATAAAAGAATTATTAATT-AAAAGAT-G
50501924 ATTAA-A-AATAATATAT
64 ATTAACATAATAATATAT
50501940 TTATTAATTA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
93 60 0.85
94 7 0.10
95 4 0.06
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (93 bp):
ATTATATAATAACATATTTATTAATTTATTTATATAAATAAAAGAATTATTAATTAAAAGATGAT
TAACATAATAATATATATAATATATATT
Found at i:50503219 original size:26 final size:22
Alignment explanation
Indices: 50503196--50503245 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
50503186 AATTATTAAA
50503196 AATTAATTTTAATTAAATAAATT
1 AATT-ATTTTAATTAAATAAATT
*
50503219 AGTTATTTTAATTAAATAAATTT
1 AATTATTTTAATTAAATAAA-TT
50503242 AATT
1 AATT
50503246 TAATTTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
AATTATTTTAATTAAATAAATT
Found at i:50514202 original size:21 final size:23
Alignment explanation
Indices: 50514177--50514226 Score: 86
Period size: 21 Copynumber: 2.3 Consensus size: 23
50514167 TCAAGAATAT
50514177 TTTATGTATA-TATTTTCCTT-A
1 TTTATGTATATTATTTTCCTTGA
50514198 TTTATGTATATTATTTTCCTTGA
1 TTTATGTATATTATTTTCCTTGA
50514221 TTTATG
1 TTTATG
50514227 AGCTAATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 10 0.37
22 10 0.37
23 7 0.26
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.62
Consensus pattern (23 bp):
TTTATGTATATTATTTTCCTTGA
Found at i:50522870 original size:30 final size:31
Alignment explanation
Indices: 50522811--50522869 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
50522801 AGAGGTGGGA
*
50522811 TGGGAAGGGAATAAAAGTTTTAGGGAAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGAAAAAG
*
50522842 TGGG-AGGGAGTAAAAATTTT-GGGAAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGAAAAA
50522870 ATAAAAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
30 14 0.54
31 4 0.15
ACGTcount: A:0.44, C:0.00, G:0.36, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGAAAAAG
Found at i:50531751 original size:69 final size:69
Alignment explanation
Indices: 50531658--50531929 Score: 235
Period size: 69 Copynumber: 3.9 Consensus size: 69
50531648 TATTGTCGAC
* ** * *
50531658 AAAATCGAGGTTCGCTGGTAAAGAGCCGCGACCTCCAAAACAGTTAGCGAGAACAAAGCTCCCAG
1 AAAATCAAGGTTCGCAAGCAAAGAGCCACGACCTCCAAAACAGTTAGCGAGAACAAAGCTCCCAG
*
50531723 TTGT
66 ATGT
* * * * * *
50531727 AAAATCAAGGTTCGCAGGCAAAGAGCCAC-ATCCTCTAAAAAACTTAGCTAGAGCAAAGCTCCCA
1 AAAATCAAGGTTCGCAAGCAAAGAGCCACGA-CCTCCAAAACAGTTAGCGAGAACAAAGCTCCCA
50531791 GATGT
65 GATGT
* * * * * ** ** * * *
50531796 AAAATTAAGGTTTGTAAGCGAAGAGTCGTGACCTTTAAAACAGTTATCGAGAGCAAAGCTCTCAG
1 AAAATCAAGGTTCGCAAGCAAAGAGCCACGACCTCCAAAACAGTTAGCGAGAACAAAGCTCCCAG
50531861 CA-GT
66 -ATGT
* * * * *
50531865 AAAATCAAGGCTCGCAAGCGAAGAGTCATGACCTCCAAAATAGTTAGCGA-AAGCAAAGCTCCCA
1 AAAATCAAGGTTCGCAAGCAAAGAGCCACGACCTCCAAAACAGTTAGCGAGAA-CAAAGCTCCCA
50531929 G
65 G
50531930 CTATACAACA
Statistics
Matches: 164, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
68 2 0.01
69 160 0.98
70 2 0.01
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (69 bp):
AAAATCAAGGTTCGCAAGCAAAGAGCCACGACCTCCAAAACAGTTAGCGAGAACAAAGCTCCCAG
ATGT
Found at i:50541717 original size:14 final size:15
Alignment explanation
Indices: 50541691--50541723 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
50541681 TGCTAAACTA
*
50541691 GGAAGGACCTTATGT
1 GGAAGGACCTTATCT
50541706 GGAAGG-CCTTATCT
1 GGAAGGACCTTATCT
50541720 GGAA
1 GGAA
50541724 AAACGTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.24
Consensus pattern (15 bp):
GGAAGGACCTTATCT
Found at i:50541837 original size:21 final size:21
Alignment explanation
Indices: 50541813--50541852 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50541803 AAAAAGAAGA
* *
50541813 AGAAGAAAGGAAAAGAAAAAT
1 AGAAAAAAGAAAAAGAAAAAT
50541834 AGAAAAAAGAAAAAGAAAA
1 AGAAAAAAGAAAAAGAAAA
50541853 GAAAAAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.03
Consensus pattern (21 bp):
AGAAAAAAGAAAAAGAAAAAT
Found at i:50541858 original size:6 final size:6
Alignment explanation
Indices: 50541803--50541858 Score: 51
Period size: 6 Copynumber: 8.8 Consensus size: 6
50541793 AATATTTCAA
* *
50541803 AAAAAG AAGAAG AAGAAAG GAAAAG AAAAATAG AAAAAAG AAAAAG -AAAAG
1 AAAAAG AAAAAG AA-AAAG AAAAAG -AAAA-AG -AAAAAG AAAAAG AAAAAG
50541854 AAAAA
1 AAAAA
50541859 AATGAGAGGC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
5 5 0.12
6 21 0.50
7 9 0.21
8 7 0.17
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:50544257 original size:50 final size:50
Alignment explanation
Indices: 50543262--50544276 Score: 1104
Period size: 50 Copynumber: 20.3 Consensus size: 50
50543252 TTATCCCCCT
* * **
50543262 GAATAGATTGAAGCTACAATAGCGAATCTTACTT-CCTTAGCGGTGCAGTG
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGA-CATTGCAGTG
* * *
50543312 GAATAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTT
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * * **
50543362 AAATAGATTGAAGCTACGACAGCGAATCTTACTTCCCTGGCGGTGCAGTG
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * * *
50543412 GAATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAGTT
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * *
50543462 AAATAGATTGAAGCTACAACAGTGAATCTTACTTCCCTGA-AGGTGCAGTG
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACA-TTGCAGTG
* * * *
50543512 GAACAGATTGAAGCTACAACAACGAATCTTGCTTCCC-GACATTGCAGTT
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * * *
50543561 AAATAGATTGAAGCTACAACAGTGAATCTTACTTCCCTGGCAGTGCAGTG
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * * *
50543611 GAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCTGACATTGCAGTT
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* **
50543661 AAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTTG-CGGTGCAGTG
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCC-TGACATTGCAGTG
* * * * *
50543711 GAACAGATTGAAGCTACAATAGCGAATCTTGCTTCCCCGACATTGCAGTT
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* **** *
50543761 AAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGGGGTCCAGTG
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * * ** *
50543811 GAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCAACATTGCAGTT
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * * * ** *
50543861 AAATAGATTCAAGCTACAACAGCGAATCTTACTTCTCTAACGGTGTAGTG
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * * *
50543911 GAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTT
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * * ** *
50543961 AAATAGATTGAAGCTACAACAGCAAATCTTACTTCCCTGGCGGTGTAGTG
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * * *
50544011 GAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCTAACATTGCAGTT
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * * * *
50544061 AAATAGATTGAAGCTACAACAACGAATCTTACTTCCCTGGCAGTGTAGTG
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * ** *
50544111 GAATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCTGACATTATAGTT
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* * * * * *
50544161 AAATAGATTGAAGCTGCCACAGCAAATCTTGCTT-CGTCGACATTGCAGTG
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCT-GACATTGCAGTG
* * * **
50544211 GAATAGATTGAAGCTACAACAGCAAATCTTATTTCCCTGACGTTGCAACG
1 GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
* *
50544261 GAACAGATTAAAGCTA
1 GAATAGATTGAAGCTA
50544277 AAGCAGAGTA
Statistics
Matches: 790, Mismatches: 167, Indels: 16
0.81 0.17 0.02
Matches are distributed among these distances:
49 44 0.06
50 739 0.94
51 7 0.01
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (50 bp):
GAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACATTGCAGTG
Found at i:50544269 original size:100 final size:100
Alignment explanation
Indices: 50543263--50544240 Score: 1501
Period size: 100 Copynumber: 9.8 Consensus size: 100
50543253 TATCCCCCTG
* * * *
50543263 AATAGATTGAAGCTACAATAGCGAATCTTACTTCCTTAGCGGTGCAGTGGAATAGATTGAAGCTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
50543328 CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
66 CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
* *
50543363 AATAGATTGAAGCTACGACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTGAAGCTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
*
50543428 CAACAGTGAATCTTGCTTCCCCGACATTGCAGTTA
66 CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
* **
50543463 AATAGATTGAAGCTACAACAGTGAATCTTACTTCCCTGAAGGTGCAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
*
50543528 CAACAACGAATCTTGCTT-CCCGACATTGCAGTTA
66 CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
* *
50543562 AATAGATTGAAGCTACAACAGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* *
50543627 CAACAGTGAATCTTGCTTCCCTGACATTGCAGTTA
66 CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
*
50543662 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTTGCGGTGCAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
*
50543727 CAATAGCGAATCTTGCTTCCCCGACATTGCAGTTA
66 CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
* *
50543762 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGGGGTCCAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* *
50543827 CAACAGTGAATCTTGCTTCCCCAACATTGCAGTTA
66 CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
* * ** *
50543862 AATAGATTCAAGCTACAACAGCGAATCTTACTTCTCTAACGGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
50543927 CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
66 CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
* *
50543962 AATAGATTGAAGCTACAACAGCAAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
**
50544027 CAACAGCGAATCTTGCTTCCCTAACATTGCAGTTA
66 CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
* * * *
50544062 AATAGATTGAAGCTACAACAACGAATCTTACTTCCCTGGCAGTGTAGTGGAATAGATTGAAGCTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* * **
50544127 CAACAGTGAATCTTGCTTCCCTGACATTATAGTTA
66 CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
* * * * * * ** *
50544162 AATAGATTGAAGCTGCCACAGCAAATCTTGCTT-CGTCGACATTGCAGTGGAATAGATTGAAGCT
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCT-GGCGGTGCAGTGGAACAGATTGAAGCT
*
50544226 ACAACAGCAAATCTT
65 ACAACAGCGAATCTT
50544241 ATTTCCCTGA
Statistics
Matches: 811, Mismatches: 65, Indels: 4
0.92 0.07 0.00
Matches are distributed among these distances:
99 96 0.12
100 715 0.88
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (100 bp):
AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
CAACAGCGAATCTTGCTTCCCCGACATTGCAGTTA
Found at i:50546267 original size:12 final size:12
Alignment explanation
Indices: 50546247--50546282 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
50546237 TTTTTAATTA
*
50546247 ATTAATATTATT
1 ATTACTATTATT
50546259 ATTACTATTATT
1 ATTACTATTATT
*
50546271 ATTGCTATTATT
1 ATTACTATTATT
50546283 TATATATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (12 bp):
ATTACTATTATT
Found at i:50547618 original size:82 final size:81
Alignment explanation
Indices: 50547481--50547701 Score: 367
Period size: 80 Copynumber: 2.7 Consensus size: 81
50547471 TTGGCTACAT
* * * *
50547481 TTTATAATTCCATTGAAAGCATCAGTTCCAAAATGTGTACACAAATTTCACCAGAAAAAAAAATA
1 TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACACAAATTTCACCAGAAAAAAAAATA
50547546 TAAA-AATAATTAATAAA
66 TAAACAA-AA-TAATAAA
50547563 TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACACAAATTTCACCAG-AAAAAAAATA
1 TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACACAAATTTCACCAGAAAAAAAAATA
50547627 TAAACAAAATAATAAA
66 TAAACAAAATAATAAA
50547643 TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACA-AAATTTCACCAGAAAAAA
1 TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACACAAATTTCACCAGAAAAAA
50547702 TAAAAAAATA
Statistics
Matches: 133, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
79 12 0.09
80 53 0.40
81 16 0.12
82 52 0.39
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.30
Consensus pattern (81 bp):
TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACACAAATTTCACCAGAAAAAAAAATA
TAAACAAAATAATAAA
Found at i:50547666 original size:80 final size:81
Alignment explanation
Indices: 50547481--50547701 Score: 367
Period size: 82 Copynumber: 2.7 Consensus size: 81
50547471 TTGGCTACAT
* * * *
50547481 TTTATAATTCCATTGAAAGCATCAGTTCCAAAATGTGTACACAAATTTCACCAGAAAAAAAAATA
1 TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACACAAATTTCACCAG-AAAAAAAATA
50547546 TAAAAATAATTAATAAA
65 TAAAAATAATTAATAAA
50547563 TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACACAAATTTCACCAGAAAAAAAATAT
1 TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACACAAATTTCACCAGAAAAAAAATAT
50547628 AAACAA-AA-TAATAAA
66 AAA-AATAATTAATAAA
50547643 TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACA-AAATTTCACCAGAAAAAA
1 TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACACAAATTTCACCAGAAAAAA
50547702 TAAAAAAATA
Statistics
Matches: 134, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
79 18 0.13
80 48 0.36
81 16 0.12
82 52 0.39
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.30
Consensus pattern (81 bp):
TTTATAATTTCATTGAAAGCATTACTTTCAAAATGTGTACACAAATTTCACCAGAAAAAAAATAT
AAAAATAATTAATAAA
Found at i:50548033 original size:11 final size:11
Alignment explanation
Indices: 50548013--50548042 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
50548003 AGAAAATTAA
50548013 AAAAAGTATTTT
1 AAAAA-TATTTT
50548025 AAAAATATTTT
1 AAAAATATTTT
50548036 AAAAATA
1 AAAAATA
50548043 AAAAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:50554239 original size:9 final size:9
Alignment explanation
Indices: 50554222--50554258 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
50554212 TGAGTTTTCG
50554222 AATTCGAAT
1 AATTCGAAT
*
50554231 AACTCGAAT
1 AATTCGAAT
*
50554240 AATTCGAGT
1 AATTCGAAT
50554249 AATTCGAAT
1 AATTCGAAT
50554258 A
1 A
50554259 TAAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:50556490 original size:11 final size:11
Alignment explanation
Indices: 50556472--50556504 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
50556462 GCATATAACT
50556472 TTAA-TATTAA
1 TTAAGTATTAA
50556482 TTAAGTATTAA
1 TTAAGTATTAA
50556493 TTAAGATATTAA
1 TTAAG-TATTAA
50556505 AACTCTATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 4 0.19
11 11 0.52
12 6 0.29
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (11 bp):
TTAAGTATTAA
Found at i:50558928 original size:22 final size:20
Alignment explanation
Indices: 50558903--50558949 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
50558893 ATATATTATG
*
50558903 TTATAAAAATTAATTACATTAA
1 TTATAAAAATTAAATA-A-TAA
*
50558925 TTATATAAATTAAATAATAA
1 TTATAAAAATTAAATAATAA
50558945 TTATA
1 TTATA
50558950 TATTTATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 8 0.35
21 1 0.04
22 14 0.61
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TTATAAAAATTAAATAATAA
Found at i:50559502 original size:2 final size:2
Alignment explanation
Indices: 50559495--50559527 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
50559485 CCCTATCAGC
50559495 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
50559528 GCTTTCTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:50560074 original size:15 final size:16
Alignment explanation
Indices: 50560054--50560089 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
50560044 TTTTTTTGAG
*
50560054 TTTTTAA-AAAAATTA
1 TTTTTAATAAAAATGA
50560069 TTTTTAATAAAAATGA
1 TTTTTAATAAAAATGA
50560085 TTTTT
1 TTTTT
50560090 TTTATTTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTTTAATAAAAATGA
Found at i:50563472 original size:434 final size:433
Alignment explanation
Indices: 50561835--50565081 Score: 3754
Period size: 434 Copynumber: 7.6 Consensus size: 433
50561825 ACCAGCCTAA
* *
50561835 GGCTAAATGGGGTTTA-TTCGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAATGGATTT
1 GGCTAAATGGGGTTTAGTT-AAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
* * * *
50561899 GAATGTAATGGTGATAAGTGAAAATGAGGAAGAACTTAAAAAGTAATTGAACCAAAAAATAAGGA
65 GAATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACC-AAAAATAAGGA
* ** ** * *
50561964 AATCGAAAAAAAAATGAAAGTAAACTTGAATAGCTACTGATGATTGAAA-AGAAAAGAATTATTA
129 AAT-GGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTT
50562028 TTAATTCTATT-CAAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACAT-TTTTCATA
193 TTAATTCTATTAC-AGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATAC-TCTTTTCATA
* *
50562091 TGCCAAATTTAGCATGATTCCTTCTAAGATTATGCCTAACAACCAACTAAATTC-AATTTTTTTT
256 TGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTT
* * * **
50562155 ATATTCTTAGAGTTTGACAAATTCACAATCTGATTTTTAATCAACCACTAATTCAACAACTTTTT
321 CTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAAC-TTTT
* * *
50562220 GATTTGGCCCCTTTTATTGCTTCTCGTTCCAATTTAG-CCAATTTGCTT
385 CAATTGGCCCATTTTATTGCTTCTCGTTCCAATTTAGCCCAATTTGCTT
* * * *
50562268 GACTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAATGGATTTC
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* * * **
50562333 AATGTAAAGATGATAGGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAATTAAAAATAAGGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* *
50562398 TGGGAAAAAAAA-GGCAGTAAACTTGAATAGCTACTGATGCATG--A-A-AAAAGAATTGCTTTT
131 T-GGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTT
* * * * *
50562458 AATTCTATTTCACTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTACACACTTTTCATCTGCC
195 AATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCC
* * * *
50562523 AAATTTAGCATGATTACTCATATGATTATGCCTAACAACCAACAAAAAT-AAGATTTTTTTTCTA
260 AAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAA-ATTTTTTTTCTA
* * * * * * *
50562587 TTCATAGAGTTTGAAAAAATCATAATATGATTTTTTATCAGCCTCTAATTCTTCAACTTTTCAAT
324 TTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAA-
* * * *
50562652 TTGACCTATTTTATTGTTTC-CTGTTCCAATTGAGCCCAATTTGCTT
388 TTGGCCCATTTTATTGCTTCTC-GTTCCAATTTAGCCCAATTTGCTT
* * * * *
50562698 GGCTAAATGGGTTTTAGTTTAGCATGAAATTAATCATACTCGATTGAGATTTAAAATTGGATTTG
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* * * * *
50562763 ATTGTAATGGTGATAAGTGAAGAGGCGAATA-GAATTAAAAAGAAATTTAACCAAAAATAAGGAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAA-AGGACTTAAAAAGAAATTGAACCAAAAATAAGGAA
** *
50562827 ATGGAAAAAAAATTGGCAACAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAATAATTGTTTT
130 ATGGAAAAAAAA-TGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTT
* * * * *
50562892 TAATTCTATTCCAGTGTGTTTTTTTTCCAAGTCACCATTACTAGGTATTTATACACTTTTCATCT
194 TAATTCTATTACAGTGTG--TTTTTTCCAAGCCACCATTACAAGGTATTTATACTCTTTTCATAT
* ** *
50562957 GCCAAATTTAGCATGATTCCTCCTAAGATTAGGCCTAACAATTAACTAAAATCAAATTTTCTTTC
257 GCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTTC
* * * * * *
50563022 TATTCATAGGGTTTGACAAATTCACAATTTGGTTTTTAATCAGTCACTAGTTCTCCAAC-TTTCA
322 TATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCA
* * *
50563086 ATTCGCCCATTTTATTACTTCTCGTTCCAATTTAGCCCAATTTTCTT
387 ATTGGCCCATTTTATTGCTTCTCGTTCCAATTTAGCCCAATTTGCTT
* * * * * * * *
50563133 GACCAAATTGGATTTAGTTAAGCATGAAACTAATCACACTCCATTGGGGTTGAAAAGTGGATTTG
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
** * *
50563198 AACATAATGGTGATAAGTGAAAGGGAGAAAGGACTTAAAAAGCAATTGAACCAAAAATAAGGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* *
50563263 TGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTAATACGTGAAAGAGAAAAGAATTGTTTTTA
131 TGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTA
* * * * * *
50563328 ATTCTATTACAATGTGCTTTTTCGAAGCCACCCTTACAAGGTATTTGT-CTTTTTTTTTCATATG
196 ATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATAC---TCTTTTCATATG
** *
50563392 TAAAATTTAGCATGATTCCTCCTAAGATTATGTCTAACAACCAACTAAAATCAAATTTTTTTTCT
258 CCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTTCT
* * * * * *
50563457 TTTAATAGAGTTTGACAAATTCACAGTCTGGTTCTTAATCAACCACTAATTCTGCAACTTTTCAA
323 ATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAA
* * * *
50563522 TTTGACCTATTTTATTTCTT-TCCGTTTCAATTTAGCCCAATTTGCTT
388 -TTGGCCCATTTTATTGCTTCT-CGTTCCAATTTAGCCCAATTTGCTT
* * * *
50563569 GGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTTGATTAGGGTTTAAAAGTGGGTTTG
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* ** * *
50563634 AATGTAATGGTGATAGGTGAAAAGGAGAAAGGACTTAAAAATTAATTGAATCAAAAATAAAGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* * * *
50563699 TGG--AAAAAATGGCAGTAAACTTGAATATCTATTGATGTGTGAAAGAGATAAGAATTGTTTTTA
131 TGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTA
* ** *
50563762 ATTCTATTACAGTGTGTTTTTTCAAAGCCA-CAACACAAGATATTTATACTCTTTTCATATGCCA
196 ATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCCA
* *
50563826 AATTTAGCATGA-T--TCC----A--A---CTAA-AATC-AGT----T----TTTTTTTTCTATT
261 AATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTTCTATT
* * * * * * *
50563869 CATAGAATTTGACAAATTCACAATTTGATTTTTAATGAGTCATTAATTATGCAATTTTTCAATTT
326 CATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAA-TT
* *
50563934 GGCCC-TTTTATTGTTTCTCG-TCCGAATTTATCCCAATTTGCTT
390 GGCCCATTTTATTGCTTCTCGTTCC-AATTTAGCCCAATTTGCTT
*
50563977 GGCTAAATGGGGTTTAGTTCAA-CATGAAATTAATCATACTCGATTGGGGTTTAAAAGTCGATTT
1 GGCTAAATGGGGTTTAGTT-AAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
* * * * * *
50564041 GAACGTAATTGTGATAGGTGAAAAAGAGAAAGGACTT-AAAAGGAATTGAACCAAAAATAAAGAA
65 GAATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAA
* * * * * *
50564105 ACGG-AAAAAAATGCCAGTAAACTTGAATAGCTATTGATGTGTGAAAGAGAAAAGAATTATTATT
130 ATGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTT
* *
50564169 AATTCTATTATAGTGTGTTTTTTCAAAGCCACCA-TACAAGGTAGCTATTTATACTCTTTTCATA
195 AATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAA-G--G-TATTTATACTCTTTTCATA
* * *
50564233 TGCCAAATTTAGCGTGATTCCTCCTTAGGTTATGCCTAACAACCAACTAAAATCAAA-TTTTTTT
256 TGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTT
* ** * * *
50564297 CTATTCATAGAGTTTGACAAATTCACAATCTAATTAGTAATCAGTCATTCATTCTGCAACTTTTC
321 CTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTC
* * *
50564362 ATTTTGGCCCTTTTTATTGCTTC-CTGTTCCAATTTAGCCCAATTAGCTT
386 A-ATTGGCCCATTTTATTGCTTCTC-GTTCCAATTTAGCCCAATTTGCTT
* ** * * * *
50564411 GGGTAAATGATGTTTAGTTAAGAATGAAATTAATCATACTCTATTGGGGATTAAAAGTGGATTTC
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* * ** * **
50564476 AATGTAATTGTGATAGGTGAAAAGGAGAAAAAAATTTTAAA-AAATTGAACCAAAAATAAGGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* * *
50564540 TGG--AAAAAATGGCAGTAAACTTGAATAGCTGCTGATGCATGAAAGAGAAAAGAATTCTTTTTA
131 TGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTA
* * * **
50564603 A-TCTATTCCAGTGTGTTTTTT-AAAGCCACCATT-CAAGGTATTTATACTATTTTCATATATCA
196 ATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCCA
* * * *
50564665 AATTTAACATGATTCCTCCTAAGTTTATTCCTAACAACCAACTAAAATCAGAATTTTTATT-TAT
261 AATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCA-AATTTTTTTTCTAT
* * * * * * *
50564729 TTATAAAGTTTGA-AAGATTCACAATCTAATTTTTAATCAACCGA-TAATTTTGTAACTTTTTAA
325 TCATAGAGTTTGACAA-ATTCACAATCTGATTTTTAATCAGCC-ACTAATTCTGCAACTTTTCAA
* *
50564792 TTTGGCCCCTTTTATTGCTT-TCCATTCCAATTTAGCCCAATTTGCTT
388 -TTGGCCCATTTTATTGCTTCT-CGTTCCAATTTAGCCCAATTTGCTT
* * *
50564839 GGCTAAATGGGGTTTAGTTGAGTATGAAATTAATCATACTCGATTGAGGTTTAAAAGTGGATTTG
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* *** * * *
50564904 ATTGTAACAATGATAAGTGAAAATGAGAAAGGACTTAAAAAGCAATTGAA-CAGAAAATAATGAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCA-AAAATAAGGAA
* *
50564968 ATGGAAAAAAAATTGGCTGTAAACTTGAATAGCTACAGATGCGTGAAAGAGAAAAGAATTGTTTT
130 ATGGAAAAAAAA-TGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTT
*
50565033 TAATTCTATTATAGTGTGTTTTTTTCCAAGCCACCATTACAAGGTATTT
194 TAATTCTATTACAGTGTG-TTTTTTCCAAGCCACCATTACAAGGTATTT
50565082 GTAATAGGCC
Statistics
Matches: 2398, Mismatches: 335, Indels: 159
0.83 0.12 0.05
Matches are distributed among these distances:
407 29 0.01
408 208 0.09
409 73 0.03
412 35 0.01
413 2 0.00
415 3 0.00
417 2 0.00
418 3 0.00
419 4 0.00
421 1 0.00
422 1 0.00
424 5 0.00
425 3 0.00
426 2 0.00
427 68 0.03
428 304 0.13
429 127 0.05
430 126 0.05
431 100 0.04
432 118 0.05
433 256 0.11
434 407 0.17
435 207 0.09
436 168 0.07
437 144 0.06
438 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.35
Consensus pattern (433 bp):
GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
TGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTA
ATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCCA
AATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTTCTATT
CATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAATTG
GCCCATTTTATTGCTTCTCGTTCCAATTTAGCCCAATTTGCTT
Found at i:50566604 original size:23 final size:23
Alignment explanation
Indices: 50566567--50566613 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
50566557 CATTTCCCCC
50566567 TTATAATTTACATTTTTTTTATTT
1 TTATAATTTACA-TTTTTTTATTT
*
50566591 TTATACTTT-CATTTTTTTATTT
1 TTATAATTTACATTTTTTTATTT
50566613 T
1 T
50566614 CATTAAATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.55
23 2 0.09
24 8 0.36
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.72
Consensus pattern (23 bp):
TTATAATTTACATTTTTTTATTT
Found at i:50574553 original size:94 final size:94
Alignment explanation
Indices: 50574392--50575434 Score: 1057
Period size: 94 Copynumber: 11.3 Consensus size: 94
50574382 GATTCCAGTC
* * * * *
50574392 CCCCTGAAGTTGTAGTGGGTTGGAATAAAGCTACAATGGCGAATCTTATCTCTCTGAAGTTACAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* *
50574457 TGGAGCAAGGTGAAGCTATAAATCCTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * *
50574486 CCCCTAAAGTTGCAGTGGGTTAGAACT-AAGCTACCATAGCGAATATTATGTCCTTGAAGTTGCA
1 CCCCTGAAGTTGCAGTGGGTTGGAA-TGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
50574550 GTGGAGCAAGATGAAGCTACAAATCCTATA
65 GTGGAGCAAGATGAAGCTACAAATCCTATA
* * ** * *
50574580 CTCCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAGCG-ACCTTATCTCCCTGAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* *
50574644 TGGAGTAAGATGAAGTTACAAATCCTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * *
50574673 CCCCTGAAGTTGCAAT-GGTTGGAATGAAACTACCATAGTGAATCTTATCTCCCTAAAGTTGCAA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
*
50574737 TGGAGCAAGATGAAGCTACAAATCCTAAA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * ** * * * * * * *
50574766 CCCCTAAAGTTGTAGTGGGTTTGAATGAAATTACCATAGTGAATCTTATCTTCTTTAAATTACAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
*
50574831 T-GAACAAGATGAAGCTACAAATCCTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * ** * * * **
50574859 CCCTTGAAGTTG-TGTGGGTTGGAATAAAGCTACCACGGTGAATCTTATCTCCTTAAAGTTATAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
*
50574923 TGGAGAAAGATGAAGCTACAAATCCTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * * * *
50574952 CACCTGAAGTTACAATAGGTTGGAATGAAGCTATAATAGCAAATCTTATCTCCCTAAAGTTGTAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
*
50575017 TGGAGCAAGATGAAGCTACAAATCCTACA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * * ** * *
50575046 CTCCTGAAGTAGCAGTAGGTTGGAATTAAGCTAAAATAGCAAATCTTAAGTCCCTGAAATTGTAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* *
50575111 TGGAGTAAGATGAAGCTACAAATCCTGTA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * *
50575140 CCCCTGAAGTTGCAGTGGGTT-G--TAAAGCTACAATAGC-AACCTTATATCCCTGAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* * * *
50575201 TGAAGCAACATAAAGCTTCAAATCCTAT-
66 TGGAGCAAGATGAAGCTACAAATCCTATA
*
50575229 CCCTCTG-A-----A----GTTGGAATGAAGCTACAATAGTGAATCTTATCTCCCTGAAGTTGCA
1 CCC-CTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
* * *
50575284 GTGGAGCAAGATAAAGCTACAAATTCTATG
65 GTGGAGCAAGATGAAGCTACAAATCCTATA
* * * *
50575314 CCCCT-ACAATTGTAGTGGGTTGGAATGAAACTACAATAGCGAATTTTATCTCCCTGAAGTTGCA
1 CCCCTGA-AGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
*
50575378 ATGGAGCAAGATGAAGCTACAAATCCTATA
65 GTGGAGCAAGATGAAGCTACAAATCCTATA
** ***
50575408 CCATTGAAGTTTTTGTGGGTTGGAATG
1 CCCCTGAAGTTGCAGTGGGTTGGAATG
50575435 GAATTATAAC
Statistics
Matches: 798, Mismatches: 127, Indels: 48
0.82 0.13 0.05
Matches are distributed among these distances:
80 3 0.00
81 1 0.00
83 13 0.02
84 49 0.06
85 4 0.01
89 4 0.01
90 45 0.06
91 13 0.02
92 64 0.08
93 191 0.24
94 409 0.51
95 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (94 bp):
CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
TGGAGCAAGATGAAGCTACAAATCCTATA
Found at i:50574608 original size:44 final size:44
Alignment explanation
Indices: 50574560--50574705 Score: 120
Period size: 49 Copynumber: 3.2 Consensus size: 44
50574550 GTGGAGCAAG
*
50574560 ATGAAGCTACAAATCCTATACTCCTGAAGTTGCAATGGGTTGGA
1 ATGAAACTACAAATCCTATACTCCTGAAGTTGCAATGGGTTGGA
* * **
50574604 ATGAAATTACCATAGCGA-CCT-TATCTCCCTGAAGTTGCAGTGGAGTAAG-
1 ATGAAACTA-CA-A---ATCCTATA-CT-CCTGAAGTTGCAATGG-GTTGGA
** *
50574653 ATGAAGTTACAAATCCTATACCCCTGAAGTTGCAAT-GGTTGGA
1 ATGAAACTACAAATCCTATACTCCTGAAGTTGCAATGGGTTGGA
50574696 ATGAAACTAC
1 ATGAAACTAC
50574706 CATAGTGAAT
Statistics
Matches: 79, Mismatches: 12, Indels: 23
0.69 0.11 0.20
Matches are distributed among these distances:
42 3 0.04
43 9 0.11
44 21 0.27
45 6 0.08
46 3 0.04
47 3 0.04
48 7 0.09
49 24 0.30
50 3 0.04
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
ATGAAACTACAAATCCTATACTCCTGAAGTTGCAATGGGTTGGA
Found at i:50574639 original size:49 final size:48
Alignment explanation
Indices: 50574582--50574739 Score: 143
Period size: 49 Copynumber: 3.3 Consensus size: 48
50574572 ATCCTATACT
50574582 CCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAGCGACCTTATCTC
1 CCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAG-GACCTTATCTC
* ** *
50574631 CCTGAAGTTGCAGTGGAGTAAG-ATGAAGTTA-CA-A--ATCC-TATAC-C
1 CCTGAAGTTGCAATGG-GTTGGAATGAAATTACCATAGGA-CCTTAT-CTC
* *
50574675 CCTGAAGTTGCAAT-GGTTGGAATGAAACTACCATAGTGAATCTTATCTC
1 CCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAG-G-ACCTTATCTC
*
50574724 CCTAAAGTTGCAATGG
1 CCTGAAGTTGCAATGG
50574740 AGCAAGATGA
Statistics
Matches: 85, Mismatches: 11, Indels: 25
0.70 0.09 0.21
Matches are distributed among these distances:
42 3 0.04
43 8 0.09
44 20 0.24
45 4 0.05
47 1 0.01
48 4 0.05
49 41 0.48
50 4 0.05
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (48 bp):
CCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAGGACCTTATCTC
Found at i:50574794 original size:186 final size:187
Alignment explanation
Indices: 50574392--50575433 Score: 1059
Period size: 186 Copynumber: 5.6 Consensus size: 187
50574382 GATTCCAGTC
* * * *
50574392 CCCCTGAAGTTGTAGTGGGTTGGAAT-AAAGCTACAATGGCGAATCTTATCTCTCTGAAGTTACA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAA-CTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
* * * *
50574456 GTGGAGCAAGGTGAAGCTATAAATCCTATACCCCTAAAGTTGCAGTGGGTTAGAACTAAGCTACC
65 GTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAA-TAAGCTACC
* * * * *
50574521 ATAGCGAATATTATGTCCTTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
129 ATAGTGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * * * *
50574580 CTCCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAGCG-ACCTTATCTCCCTGAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* * * *
50574644 TGGAGTAAGATGAAGTTACAAATCCTATACCCCTGAAGTTGCAAT-GGTTGGAATGAAACTACCA
66 TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAAT-AAGCTACCA
* *
50574708 TAGTGAATCTTATCTCCCTAAAGTTGCAATGGAGCAAGATGAAGCTACAAATCCTAAA
130 TAGTGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * * * * * * *
50574766 CCCCTAAAGTTGTAGTGGGTTTGAATGAAATTACCATAGTGAATCTTATCTTCTTTAAATTACAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* * *
50574831 T-GAACAAGATGAAGCTACAAATCCTATACCCTTGAAGTTG-TGTGGGTTGGAATAAAGCTACCA
66 TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAAT-AAGCTACCA
** * ** *
50574894 CGGTGAATCTTATCTCCTTAAAGTTATAGTGGAGAAAGATGAAGCTACAAATCCTATA
130 TAGTGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * * * * *
50574952 CACCTGAAGTTACAATAGGTTGGAATGAAGCTATAATAGCAAATCTTATCTCCCTAAAGTTGTAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* * * * **
50575017 TGGAGCAAGATGAAGCTACAAATCCTACACTCCTGAAGTAGCAGTAGGTTGGAATTAAGCTAAAA
66 TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAA-TAAGCTACCA
** ** * * *
50575082 TAGCAAATCTTAAGTCCCTGAAA-TTGTAGTGGAGTAAGATGAAGCTACAAATCCTGTA
130 TAGTGAATCTTATCTCCCT-AAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* *
50575140 CCCCTGAAGTTGCAGTGGGTT-G--T-AAAGCTACAATAGC-AACCTTATATCCCTGAAGTTGCA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAA-CTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
* * * *
50575200 GTGAAGCAACATAAAGCTTCAAATCCTAT-CCCTCTG-A-----A----GTTGGAATGAAGCTAC
65 GTGGAGCAAGATGAAGCTACAAATCCTATACCC-CTGAAGTTGCAGTGGGTTGGAAT-AAGCTAC
* * * * *
50575254 AATAGTGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTACAAATTCTATG
128 CATAGTGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * *
50575314 CCCCT-ACAATTGTAGTGGGTTGGAATGAAACTACAATAGCGAATTTTATCTCCCTGAAGTTGCA
1 CCCCTGA-AGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
* ** ***
50575378 ATGGAGCAAGATGAAGCTACAAATCCTATACCATTGAAGTTTTTGTGGGTTGGAAT
65 GTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAAT
50575434 GGAATTATAA
Statistics
Matches: 694, Mismatches: 131, Indels: 58
0.79 0.15 0.07
Matches are distributed among these distances:
173 4 0.01
174 76 0.11
175 1 0.00
177 11 0.02
178 50 0.07
179 3 0.00
183 3 0.00
184 48 0.07
185 12 0.02
186 250 0.36
187 112 0.16
188 117 0.17
189 7 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (187 bp):
CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATAAGCTACCAT
AGTGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
Found at i:50575459 original size:94 final size:94
Alignment explanation
Indices: 50575238--50575488 Score: 252
Period size: 94 Copynumber: 2.7 Consensus size: 94
50575228 TCCCTCTGAA
* * *** * *
50575238 GTTGGAATGAAGCTACAATAGTGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTA
1 GTTGGAATGAAACTACAACAACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAAGATGAAGCTA
* * *
50575303 CAAATTCTATGCCCCTACAATTGTAGTGG
66 CAAATCCTATACCACTACAATTGTAGTGG
* * * *
50575332 GTTGGAATGAAACTACAATAGCGAATTTTATCTCCCTGAAGTTGCAATGGAGCAAGATGAAGCTA
1 GTTGGAATGAAACTACAACAACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAAGATGAAGCTA
* * * *
50575397 CAAATCCTATACCATTGA-AGTTTTTGTGG
66 CAAATCCTATACCACT-ACAATTGTAGTGG
* * * * * * * *
50575426 GTTGGAATGGAATTATAACAACAAATCTCATCTCCTTAAAGTTGAAATTGAGCAAGATGAAGC
1 GTTGGAATGAAACTACAACAACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAAGATGAAGC
50575489 CATGATACTA
Statistics
Matches: 132, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
94 131 0.99
95 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.28
Consensus pattern (94 bp):
GTTGGAATGAAACTACAACAACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAAGATGAAGCTA
CAAATCCTATACCACTACAATTGTAGTGG
Found at i:50575723 original size:5 final size:5
Alignment explanation
Indices: 50575713--50575742 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
50575703 TTTGTCCGAC
50575713 CCAAA CCAAA CCAAA CCAAA CCAAA CCAAA
1 CCAAA CCAAA CCAAA CCAAA CCAAA CCAAA
50575743 AAAACATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.40, G:0.00, T:0.00
Consensus pattern (5 bp):
CCAAA
Found at i:50577136 original size:7 final size:8
Alignment explanation
Indices: 50577119--50577143 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50577109 CCCTTCCTTC
50577119 TTTATTTT
1 TTTATTTT
50577127 TTTATTTT
1 TTTATTTT
50577135 TTTATTTT
1 TTTATTTT
50577143 T
1 T
50577144 CAACATTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTATTTT
Found at i:50580438 original size:3 final size:3
Alignment explanation
Indices: 50580430--50580515 Score: 102
Period size: 3 Copynumber: 29.0 Consensus size: 3
50580420 AAACATAAAC
** * *
50580430 AAT AAT AAT AGC AAA AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
50580478 AAT AAT AAC AAT ACT AAT AAT AAT AAT AA- GAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
50580516 TAATTAAACA
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
2 1 0.01
3 68 0.99
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:50582112 original size:50 final size:50
Alignment explanation
Indices: 50581999--50582140 Score: 140
Period size: 50 Copynumber: 2.8 Consensus size: 50
50581989 ATGTTTAACT
* * **
50581999 ACAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATATATTCCATT
1 ACAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATCTATTCAACC
* * * * * * *
50582049 ATACTGCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTATTTAACC
1 ACAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATCTATTCAACC
* ** **
50582099 GCAATGTCGGGGAAGCGAGATTCGCCATCGTAGCTTCAATCT
1 ACAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATCT
50582141 GTTCCACTGC
Statistics
Matches: 70, Mismatches: 22, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
50 70 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (50 bp):
ACAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATCTATTCAACC
Found at i:50582286 original size:172 final size:172
Alignment explanation
Indices: 50582000--50582324 Score: 415
Period size: 172 Copynumber: 1.9 Consensus size: 172
50581990 TGTTTAACTA
* * *
50582000 CAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATATATTCCATTATACTGCCAGGGAAGT
1 CAATGTCGGGGAAGGAAGATTCGCCGTCGTAGCTTCAATATATTCCATCATACTGCCAGGGAAGT
* *
50582065 AAGATTCACTGTTGTAGCTTCAATCTATTTAACCGCAATGTCGGGGAAGCGAGATTCGCCATCGT
66 AAGATTCACTGTTGTAGCCTCAATATATTTAACCGCAATGTCGGGGAAGCGAGATTCGCCATCGT
*
50582130 AGCTTCAATCTGTTCCACTGCACCGCTAGGGAAATGAGATTG
131 AGCTTCAATCTATTCCACTGCACCGCTAGGGAAATGAGATTG
* * *
50582172 CAATGTCGGGGAAGGAAGATTCTCCGAT-GTAGCTTCAATCTATTCCACTGCAT-C-GCCTGGGA
1 CAATGTCGGGGAAGGAAGATTCGCCG-TCGTAGCTTCAATATATTCCA-T-CATACTGCCAGGGA
** * ** * **
50582234 AGGTAAGATTCGTTGTTGTGGCCTCAATAT-TTTAATTGCAATGTCGGGGAAGCGAGATTTGCTG
63 A-GTAAGATTCACTGTTGTAGCCTCAATATATTTAACCGCAATGTCGGGGAAGCGAGATTCGCCA
* *
50582298 TTGTGGCTTCAATCTATTCCACTGCAC
127 TCGTAGCTTCAATCTATTCCACTGCAC
50582325 TACCAGGGAA
Statistics
Matches: 130, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
172 102 0.78
173 26 0.20
174 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (172 bp):
CAATGTCGGGGAAGGAAGATTCGCCGTCGTAGCTTCAATATATTCCATCATACTGCCAGGGAAGT
AAGATTCACTGTTGTAGCCTCAATATATTTAACCGCAATGTCGGGGAAGCGAGATTCGCCATCGT
AGCTTCAATCTATTCCACTGCACCGCTAGGGAAATGAGATTG
Found at i:50582408 original size:44 final size:43
Alignment explanation
Indices: 50582360--50582692 Score: 184
Period size: 44 Copynumber: 7.6 Consensus size: 43
50582350 CTTCGATCTG
*
50582360 CTCCACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAGGATCT-CAATCTTCAACCTA
* * *
50582404 CTCCACTACTGCCTAGGGAGATAGGA-CT-AATGGCTTAAACATGCTT
1 CTCCACTACTGCTTAGGGAGATAGGATCTCAAT--CTTCAAC---CTA
* * ** *
50582450 CTCCACTA-T-CTT-GGGAAGATAAGAT-TCACCATCTTCGATATG
1 CTCCACTACTGCTTAGGG-AGATAGGATCTCA--ATCTTCAACCTA
* * * *
50582492 TTCCGCTACTGCTTAGGGAGACAGAATCTACAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAGGATCT-CAATCTTCAACCTA
* * *
50582536 CTCCACTACTGCTTAGGGAGATAGGA-CT-AATGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAGGATCTCAAT--CTTCAACCTA
* * * * * *
50582579 CTTCTCTACTGTCTT-GGGAAGATAAGAT-TCACCATCTTCGATCTG
1 CTCCACTACTG-CTTAGGG-AGATAGGATCTCA--ATCTTCAACCTA
* * * ** *
50582624 CTCCACTACTGCCTAGGGTGACAAAATCTGTAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAGGATCT-CAATCTTCAACCTA
50582668 CTCCACTACTGC-TAGGGAGATAGGA
1 CTCCACTACTGCTTAGGGAGATAGGA
50582693 CTAATGGCTT
Statistics
Matches: 217, Mismatches: 46, Indels: 53
0.69 0.15 0.17
Matches are distributed among these distances:
41 6 0.03
42 7 0.03
43 42 0.19
44 113 0.52
45 32 0.15
46 13 0.06
47 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (43 bp):
CTCCACTACTGCTTAGGGAGATAGGATCTCAATCTTCAACCTA
Found at i:50582567 original size:132 final size:131
Alignment explanation
Indices: 50582349--50582713 Score: 579
Period size: 132 Copynumber: 2.8 Consensus size: 131
50582339 AGATTTGTCG
*
50582349 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTACTCCACTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACT
50582414 GCCTAGGGAGATAGGACTAATGGCTTAAA-CATGCTTCTCCACTATCTTGGGAAGATAAGATTCA
66 G-CTAGGGAGATAGGACTAATGGCTTAAATC-TGCTTCTCCACTATCTTGGGAAGATAAGATTCA
50582478 CCA
129 CCA
* * * *
50582481 TCTTCGATATGTTCCGCTACTGCTTAGGGAGACAGAATCTACAATCTTCAACCTACTCCACTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACT
* *
50582546 GCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTCTTGGGAAGATAAGATTCAC
66 GC-TAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCAC
50582611 CA
130 CA
* * * *
50582613 TCTTCGATCTGCTCCACTACTGCCTAGGGTGACAAAATCTGTAATCTTCAACCTACTCCACTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACT
**
50582678 GCTAGGGAGATAGGACTAATGGCTTTGATCTGCTTC
66 GCTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
50582714 GCTGTTAGTA
Statistics
Matches: 214, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
131 33 0.15
132 180 0.84
133 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (131 bp):
TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACT
GCTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACC
A
Found at i:50584092 original size:9 final size:9
Alignment explanation
Indices: 50584078--50584147 Score: 74
Period size: 9 Copynumber: 7.9 Consensus size: 9
50584068 GGCCTCTCCT
50584078 TTTTTTTTC
1 TTTTTTTTC
50584087 TTTTTTTTC
1 TTTTTTTTC
*
50584096 ---TTCTTC
1 TTTTTTTTC
*
50584102 TTTCTTTTC
1 TTTTTTTTC
*
50584111 TTCTTTTTC
1 TTTTTTTTC
50584120 TTTTTTTTC
1 TTTTTTTTC
50584129 TTCTTTTTTC
1 TT-TTTTTTC
50584139 TTCTTTTTT
1 TT-TTTTTT
50584148 TGTATTTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
6 5 0.10
9 30 0.59
10 16 0.31
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:50584134 original size:18 final size:18
Alignment explanation
Indices: 50584081--50584147 Score: 86
Period size: 15 Copynumber: 3.8 Consensus size: 18
50584071 CTCTCCTTTT
50584081 TTTTTCTTTTTTTTCTTC
1 TTTTTCTTTTTTTTCTTC
*
50584099 ---TTCTTTCTTTTCTTC
1 TTTTTCTTTTTTTTCTTC
50584114 TTTTTCTTTTTTTTCTTC
1 TTTTTCTTTTTTTTCTTC
50584132 TTTTTTCTTCTTTTTT
1 -TTTTTCTT-TTTTTT
50584148 TGTATTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
15 14 0.33
18 14 0.33
19 8 0.19
20 6 0.14
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTCTTTTTTTTCTTC
Found at i:50584156 original size:19 final size:19
Alignment explanation
Indices: 50584078--50584147 Score: 83
Period size: 18 Copynumber: 3.8 Consensus size: 19
50584068 GGCCTCTCCT
*
50584078 TTTTTTTTCTTTTTT-TTC
1 TTTTTCTTCTTTTTTCTTC
* *
50584096 TTCTTCTT-TCTTTTCTTC
1 TTTTTCTTCTTTTTTCTTC
50584114 TTTTTCTT-TTTTTTCTTC
1 TTTTTCTTCTTTTTTCTTC
50584132 TTTTTTCTTCTTTTTT
1 -TTTTTCTTCTTTTTT
50584148 TGTATTTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
17 5 0.11
18 25 0.57
19 8 0.18
20 6 0.14
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTTTCTTCTTTTTTCTTC
Found at i:50584157 original size:33 final size:31
Alignment explanation
Indices: 50584079--50584157 Score: 90
Period size: 33 Copynumber: 2.5 Consensus size: 31
50584069 GCCTCTCCTT
50584079 TTTTTTTCTTTTTTTTCTTCTTCTTTCTTTTC
1 TTTTTTT-TTTTTTTTCTTCTTCTTTCTTTTC
*
50584111 TTCTTTTTCTTTTTTTTCTTCTT-TTT-TCTTC
1 TT-TTTTT-TTTTTTTTCTTCTTCTTTCTTTTC
*
50584142 TTTTTTTGTATTTTTT
1 TTTTTTT-TTTTTTTT
50584158 ATTGAATCTG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
30 12 0.28
31 6 0.14
32 5 0.12
33 20 0.47
ACGTcount: A:0.01, C:0.15, G:0.01, T:0.82
Consensus pattern (31 bp):
TTTTTTTTTTTTTTTCTTCTTCTTTCTTTTC
Found at i:50587023 original size:19 final size:20
Alignment explanation
Indices: 50586994--50587045 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
50586984 CACTTTGTGA
* *
50586994 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
50587013 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
50587033 AAATG-AATGCAAA
1 AAATGTAATGCAAA
50587046 AAGATACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:50589252 original size:3 final size:3
Alignment explanation
Indices: 50589191--50589243 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
50589181 AAACATAAAC
** * * * *
50589191 AAT AAT AAT AGC AAA AAT AGT ATT AAT GAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
50589239 AAT AA
1 AAT AA
50589244 GGTAATAATT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:50592693 original size:434 final size:433
Alignment explanation
Indices: 50591686--50593423 Score: 2157
Period size: 434 Copynumber: 4.0 Consensus size: 433
50591676 CTTGGCTAAA
50591686 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
1 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
* * * * * *
50591751 GGAA-GTAAAGGTAATAAGTGAAAAGGAGAAAAGACTTAAAAAGAAATTGAACCAAAAGTAAGGA
66 -GAACATAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGGAAATTGAACCAAAAATAAGGA
* * * *
50591815 AATGGTAAAAAAATGACAATAAGCTTGAATAGCTATTGATGCGTGAAAGAGAAAAGAATTGTTTT
130 AATGG-AAAAAAATGACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGCTTT
** * * * * * *
50591880 TAATTCTATTCCAGTGTGTGTTTTT-GAAGCCTCCATTACAAGGTATTAATAGACTTTTCATATG
194 TAATTCTATTTTAATGTGT-TTTTTCCAAGCCACCATTACAAGGTATTTATACACTTTTCATATA
* * * * *
50591944 CCATATTGAGCATGATTCCTCCTAAGATTATGCCTAATAATCAACTAAAATCAGATTTTTTTTTC
258 CCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGA-TTTGTTTTC
* * * * *
50592009 TATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAACCACTAATTATGA-AAATTTTT
322 TATTCATAGAGTTTGACAAATTCACAATCTAATTTTTAATCAGCCACTAATTCT-ACAACTTTTC
* ** * *
50592073 AACTTGGTCCCTTCTATTGCTT-TCCGTTCCAATTTAGCCCAAATTTGCT
386 AATTTGACCCCTTTTATTGCTTCT-CGTTCCAATTTAG-CCTAATTTGCT
** * * * **
50592122 TGGCTAAATACGATTTAGTTGAACATGAAATTAATCATACTCGATTGGGATTTAAAAGTAAATTT
1 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
** * * **
50592187 GAATGTAATGGTGATAGGTGAAAAGGAGAGAGGACTTCGAA-GAAATTGAACCAAAAATAAGGAA
66 GAACATAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGGAAATTGAACCAAAAATAAGGAA
*
50592251 ATGGAAAAAAATGGCAGTAAACTTGAATAGCTA-TAGATGCGTGAAAGAGAAAAGAATTGCTTTT
131 ATGGAAAAAAATGACAGTAAACTTGAATAGCTACT-GATGCGTGAAAGAGAAAAGAATTGCTTTT
* * * * *
50592315 AATTCTATTTTAATGTGTTTTTTCTAGGCCACCATTACAAGTTATTCATACACTTTTCATATGCC
195 AATTCTATTTTAATGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACACTTTTCATATACC
* *
50592380 AAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCATATTTGTTTGCTAT
260 AAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTGTTTTCTAT
* ** * *
50592445 TTATAGAGTTTGACAAATTCTTAATCTAATTTTTAATCAGCCCCTATTTCTACAACTTTTCAATT
325 TCATAGAGTTTGACAAATTCACAATCTAATTTTTAATCAGCCACTAATTCTACAACTTTTCAATT
* *
50592510 TGACCCCTTTTATTTCTTC-CTGTTCCAATTTAGCCTAATTTGTT
390 TGACCCCTTTTATTGCTTCTC-GTTCCAATTTAGCCTAATTTGCT
* * *
50592554 TGGCTAAATGTGGTTTAGTTGAGCATGAAATTAATCATACTTGATTTGGGTTTAAAAGTGGATTT
1 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
* * * * *
50592619 AAACATAATGGTGATATGTGAAAAGGAGAAATGACTTAAAAGGCAATCGAACCAAAAATAAGGAA
66 GAACATAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGGAAATTGAACCAAAAATAAGGAA
* * * * * *
50592684 CTGGGAAAAATATGACAGTAAACTTGAATATCTACTGATGTGTGAAAGAGAAAAAAAATGCTTTT
131 AT-GGAAAAAAATGACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGCTTTT
* * *
50592749 AATTCTATTTCT-ATGTATTTTTTCCAAGTCAACATTACAAGGTATTTATATCA-TTTTCATATA
195 AATTCTATTT-TAATGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATA-CACTTTTCATATA
* * *
50592812 CCAAATTTAGCATGATTCCTCCTAAGATTATTCCTAACTACCAACTAAAATCACATTTGTTTTCT
258 CCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTGTTTTCT
* * * **
50592877 ATTCATAGAGTTTGACAAATTCAAAATCTAATTTTCAATCAGCCCCTAATTCTGTAACTTTTCAA
323 ATTCATAGAGTTTGACAAATTCACAATCTAATTTTTAATCAGCCACTAATTCTACAACTTTTCAA
* *
50592942 TTTGGCCCCTTTTATTGCTTCTCATTCCAA-TTAGCCTAATTTGCT
388 TTTGACCCCTTTTATTGCTTCTCGTTCCAATTTAGCCTAATTTGCT
* * *
50592987 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCAAATGGGGTTTAATAGTGGATTT
1 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
* *
50593052 GAACATAATGATGATAAGTGAAAAGGAGAAAGGACTTGAAA-GACAATTGAACCAAAAATAAGGA
66 GAACATAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGGA-AATTGAACCAAAAATAAGGA
* * * * * * *
50593116 ACTAGAAAAAAGTCGACAGTAAACTTGAATAACTACTGATGCATGATAGAGAAAAGAATTGTTTT
130 AATGGAAAAAAAT-GACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGCTTT
* *
50593181 TAATTCTATTTTAATATGTTTTTTTCCAAGCCACCATTGCAAGGTATTTATACACTTTTCATATA
194 TAATTCTATTTTAATGTG-TTTTTTCCAAGCCACCATTACAAGGTATTTATACACTTTTCATATA
** * * * ** ** *
50593246 TAAAATTTAGCATGATTCTTCATAAGATGATGCCTAATGATTAACTAAAATCAGATTTTTTTTCT
258 CCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTGTTTTCT
* * * * * *
50593311 ATTCATAGAGTTTGATAAGTTCACAATTTGATTTTTAATCAGCCACTAATACTGCAACTTTTCAA
323 ATTCATAGAGTTTGACAAATTCACAATCTAATTTTTAATCAGCCACTAATTCTACAACTTTTCAA
* * * * *
50593376 TTTGACCCATTTTATTGCTTCTCGTTCCAGTTTTGCCCAATTTTCT
388 TTTGACCCCTTTTATTGCTTCTCGTTCCAATTTAGCCTAATTTGCT
50593422 TG
1 TG
50593424 TTTATTTGAA
Statistics
Matches: 1127, Mismatches: 157, Indels: 37
0.85 0.12 0.03
Matches are distributed among these distances:
432 109 0.10
433 307 0.27
434 575 0.51
435 48 0.04
436 88 0.08
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (433 bp):
TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
GAACATAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGGAAATTGAACCAAAAATAAGGAA
ATGGAAAAAAATGACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGCTTTTA
ATTCTATTTTAATGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACACTTTTCATATACCA
AATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTGTTTTCTATT
CATAGAGTTTGACAAATTCACAATCTAATTTTTAATCAGCCACTAATTCTACAACTTTTCAATTT
GACCCCTTTTATTGCTTCTCGTTCCAATTTAGCCTAATTTGCT
Found at i:50595650 original size:37 final size:35
Alignment explanation
Indices: 50595608--50595689 Score: 92
Period size: 37 Copynumber: 2.3 Consensus size: 35
50595598 TAACTTATAC
* * *
50595608 AAATTTTAAGTTTTTTTTTTTCGTTTTTTAAAATTT
1 AAATTTTAAATATTTTTTTTT-GTTTTTCAAAATTT
*
50595644 ACAATTTCTAAATATTTTTTTTTGTTTTTCAAATTTT
1 A-AATTT-TAAATATTTTTTTTTGTTTTTCAAAATTT
*
50595681 AAATATTAA
1 AAATTTTAA
50595690 TGTAATTTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
35 3 0.08
36 5 0.13
37 18 0.46
38 13 0.33
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (35 bp):
AAATTTTAAATATTTTTTTTTGTTTTTCAAAATTT
Found at i:50598838 original size:32 final size:31
Alignment explanation
Indices: 50598778--50598839 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
50598768 TTTTCGTACA
*
50598778 TAATAAAAAAAAAGTGAGTCATTGTTATAAT
1 TAATAAAAAAAAAGTAAGTCATTGTTATAAT
* * *
50598809 TAATAAAAAAAAATTCAAGTTATTTTTATAA
1 TAATAAAAAAAAAGT-AAGTCATTGTTATAA
50598840 AAAAGCCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 14 0.54
32 12 0.46
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.35
Consensus pattern (31 bp):
TAATAAAAAAAAAGTAAGTCATTGTTATAAT
Found at i:50602901 original size:23 final size:24
Alignment explanation
Indices: 50602846--50602902 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
50602836 TTATATGTTG
*
50602846 AATATGTTAAAAATGTTTTAATTAT
1 AATATGTGAAAAATG-TTTAATTAT
*
50602871 --TATTTGAAAAATG-TTAATTAT
1 AATATGTGAAAAATGTTTAATTAT
50602892 AATATGTGAAA
1 AATATGTGAAA
50602903 TAATAAATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
21 8 0.30
23 19 0.70
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.44
Consensus pattern (24 bp):
AATATGTGAAAAATGTTTAATTAT
Found at i:50606211 original size:19 final size:21
Alignment explanation
Indices: 50606170--50606214 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
50606160 ATAAAAAAAT
*
50606170 AAAAATATATAAGATCTAGAA
1 AAAAACATATAAGATCTAGAA
*
50606191 AAAAACATATAA-AT-TATAA
1 AAAAACATATAAGATCTAGAA
50606210 AAAAA
1 AAAAA
50606215 TTCAAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 9 0.41
20 2 0.09
21 11 0.50
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.22
Consensus pattern (21 bp):
AAAAACATATAAGATCTAGAA
Found at i:50606221 original size:27 final size:27
Alignment explanation
Indices: 50606191--50606243 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
50606181 AGATCTAGAA
50606191 AAAAACAT-ATAAATTATAAAA-AAATTC
1 AAAAACATGAT-AATTA-AAAATAAATTC
*
50606218 AAAAATATGATAATTAAAAATAAATT
1 AAAAACATGATAATTAAAAATAAATT
50606244 AGTTGAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 4 0.17
27 17 0.74
28 2 0.09
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (27 bp):
AAAAACATGATAATTAAAAATAAATTC
Found at i:50607687 original size:25 final size:26
Alignment explanation
Indices: 50607634--50607696 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
50607624 ATTTGTACAT
50607634 ATTATAAAAAATGTATAAACATATGA
1 ATTATAAAAAATGTATAAACATATGA
*
50607660 ATTATAAAACATG-A-AAACATAAAT-A
1 ATTATAAAAAATGTATAAACAT--ATGA
50607685 ATTATAAAAAAT
1 ATTATAAAAAAT
50607697 ATGAATGTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 6 0.18
25 13 0.39
26 14 0.42
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (26 bp):
ATTATAAAAAATGTATAAACATATGA
Found at i:50607727 original size:13 final size:13
Alignment explanation
Indices: 50607711--50607735 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50607701 ATGTATATAA
50607711 TATATATATAAAC
1 TATATATATAAAC
50607724 TATATATATAAA
1 TATATATATAAA
50607736 AATATGGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:50607844 original size:3 final size:3
Alignment explanation
Indices: 50607829--50607888 Score: 63
Period size: 3 Copynumber: 20.3 Consensus size: 3
50607819 ATATGTAAGT
*
50607829 ATA ATA A-A TATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ACT-
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
*
50607874 ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA A
50607889 ACTAAAAAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
2 4 0.08
3 42 0.88
4 2 0.04
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:50609137 original size:7 final size:7
Alignment explanation
Indices: 50609116--50609176 Score: 52
Period size: 7 Copynumber: 8.4 Consensus size: 7
50609106 AAAAATATTT
50609116 TTTAATA
1 TTTAATA
50609123 TTTAAATA
1 TTT-AATA
50609131 TTTAATA
1 TTTAATA
*
50609138 TTATAATT
1 TT-TAATA
* *
50609146 TTTTATT
1 TTTAATA
*
50609153 TTTAAAA
1 TTTAATA
50609160 TTTTAA-A
1 -TTTAATA
50609167 TTTAATA
1 TTTAATA
50609174 TTT
1 TTT
50609177 TTATTTTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
6 5 0.11
7 22 0.49
8 18 0.40
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
TTTAATA
Found at i:50609157 original size:30 final size:29
Alignment explanation
Indices: 50609112--50609188 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 29
50609102 ATTCAAAAAT
*
50609112 ATTTTTTAATATTTAAATA-TTTAATATTATA
1 ATTTTTT-ATTTTTAAATATTTTAA-ATT-TA
50609143 ATTTTTTATTTTTAAA-ATTTTAAATTTA
1 ATTTTTTATTTTTAAATATTTTAAATTTA
50609171 ATATTTTTA-TTTTAAATA
1 AT-TTTTTATTTTTAAATA
50609189 AATCTAATTG
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
28 11 0.26
29 11 0.26
30 13 0.31
31 7 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTTTTTATTTTTAAATATTTTAAATTTA
Found at i:50609184 original size:14 final size:14
Alignment explanation
Indices: 50609121--50609185 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
50609111 TATTTTTTAA
* *
50609121 TATTTAAATATTTAA
1 TATTTTAATATTT-T
*
50609136 TATTATAAT-TTTT
1 TATTTTAATATTTT
*
50609149 TATTTTTAAAATTTT
1 TA-TTTTAATATTTT
* *
50609164 AAATTTAATATTTT
1 TATTTTAATATTTT
50609178 TATTTTAA
1 TATTTTAA
50609186 ATAAATCTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
13 2 0.05
14 24 0.63
15 12 0.32
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTTTAATATTTT
Found at i:50609188 original size:15 final size:15
Alignment explanation
Indices: 50609108--50609188 Score: 53
Period size: 15 Copynumber: 5.3 Consensus size: 15
50609098 TCAAATTCAA
50609108 AAATATTTTTTAATATTT
1 AAATA-TTTTT-AT-TTT
* *
50609126 AAATA-TTTAATATT
1 AAATATTTTTATTTT
50609140 ATAAT-TTTTTATTTTT
1 A-AATATTTTTA-TTTT
* *
50609156 AAA-ATTTTAAATTT
1 AAATATTTTTATTTT
50609170 -AATATTTTTATTTT
1 AAATATTTTTATTTT
50609184 AAATA
1 AAATA
50609189 AATCTAATTG
Statistics
Matches: 49, Mismatches: 8, Indels: 15
0.68 0.11 0.21
Matches are distributed among these distances:
13 2 0.04
14 15 0.31
15 20 0.41
16 7 0.14
18 5 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AAATATTTTTATTTT
Found at i:50609936 original size:2 final size:2
Alignment explanation
Indices: 50609929--50609970 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
50609919 TTTTTGTTTA
50609929 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50609971 TTATTAAATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50611010 original size:36 final size:35
Alignment explanation
Indices: 50610947--50611018 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 35
50610937 ATTAATTGAT
* *
50610947 TTTTTTAAAATTTAAAAAATTCAAAAAATGTATAAA
1 TTTTTTAAAAATTAAAAAATT-AAAAAAGGTATAAA
50610983 TTTTTTAAAAATT-AAAAATTATTAAAAAGGTATAAA
1 TTTTTTAAAAATTAAAAAATTA--AAAAAGGTATAAA
50611019 AATTATAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 1 0.03
35 7 0.22
36 24 0.75
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.39
Consensus pattern (35 bp):
TTTTTTAAAAATTAAAAAATTAAAAAAGGTATAAA
Found at i:50611025 original size:9 final size:9
Alignment explanation
Indices: 50610952--50611035 Score: 50
Period size: 9 Copynumber: 9.2 Consensus size: 9
50610942 TTGATTTTTT
*
50610952 TAAAATTTA
1 TAAAAATTA
50610961 -AAAAATTCA
1 TAAAAATT-A
50610970 -AAAAATGTA
1 TAAAAAT-TA
** *
50610979 TAAATTTTT
1 TAAAAATTA
50610988 TAAAAA-T-
1 TAAAAATTA
50610995 TAAAAATTA
1 TAAAAATTA
*
50611004 TTAAAAAGGTA
1 -TAAAAA-TTA
50611015 TAAAAATTA
1 TAAAAATTA
50611024 TAAAAATATA
1 TAAAAAT-TA
50611034 TA
1 TA
50611036 TTTTATTATT
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
7 6 0.10
8 8 0.14
9 22 0.37
10 21 0.36
11 2 0.03
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.35
Consensus pattern (9 bp):
TAAAAATTA
Found at i:50611033 original size:17 final size:18
Alignment explanation
Indices: 50610987--50611033 Score: 62
Period size: 17 Copynumber: 2.6 Consensus size: 18
50610977 TATAAATTTT
50610987 TTAAAAAT-TAAAAATTA
1 TTAAAAATATAAAAATTA
50611004 TTAAAAAGGTATAAAAATTA
1 TTAAAAA--TATAAAAATTA
50611024 -TAAAAATATA
1 TTAAAAATATA
50611034 TATTTTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 11 0.41
19 7 0.26
20 9 0.33
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (18 bp):
TTAAAAATATAAAAATTA
Found at i:50616169 original size:32 final size:32
Alignment explanation
Indices: 50616133--50616198 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
50616123 ACATGGGAAG
50616133 ACTTAATTTTTTCTTAGGTGTTGAAGTTCAAC
1 ACTTAATTTTTTCTTAGGTGTTGAAGTTCAAC
50616165 ACTTAATTTTTTCTTAGGTGTTGAAGTTCAAC
1 ACTTAATTTTTTCTTAGGTGTTGAAGTTCAAC
50616197 AC
1 AC
50616199 ACACTTCAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (32 bp):
ACTTAATTTTTTCTTAGGTGTTGAAGTTCAAC
Found at i:50619978 original size:25 final size:25
Alignment explanation
Indices: 50619930--50619978 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
50619920 GAAATTTTAG
* *
50619930 AATTTTAAATAATTTTTGATATTTT
1 AATTTTAAATAAATTTGGATATTTT
50619955 AATTTTAAATAAAATTTGGA-ATTT
1 AATTTTAAAT-AAATTTGGATATTT
50619979 ATGATATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (25 bp):
AATTTTAAATAAATTTGGATATTTT
Done.