Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 184 of 208
Found at i:56286248 original size:28 final size:27
Alignment explanation
Indices: 56286177--56286259 Score: 105
Period size: 28 Copynumber: 3.0 Consensus size: 27
56286167 AAAATTTATT
*
56286177 TTAAAAATTAAAAAAAGTATTTTAAAA
1 TTAAAAATAAAAAAAAGTATTTTAAAA
**
56286204 TTAAAAATATTTTAAAAA-TATTTTAAAA
1 TTAAAAATA--AAAAAAAGTATTTTAAAA
56286232 TTAAAAAATAAAAAAAAGTATTTTAAAA
1 TT-AAAAATAAAAAAAAGTATTTTAAAA
56286260 ATATTTTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
27 13 0.28
28 22 0.47
29 12 0.26
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (27 bp):
TTAAAAATAAAAAAAAGTATTTTAAAA
Found at i:56286260 original size:39 final size:39
Alignment explanation
Indices: 56286206--56286287 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 39
56286196 TTTTAAAATT
56286206 AAAAATATTTTAAAAATATTTTAAAATT-AAAAAATAAA
1 AAAAATATTTTAAAAATATTTTAAAATTAAAAAAATAAA
*
56286244 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTAA
1 AAAAA-TATTTTAAAAATATTTTAAAATTAAAAAAATAAA
56286284 AAAA
1 AAAA
56286288 TAAATATATT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 5 0.12
39 23 0.56
40 13 0.32
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (39 bp):
AAAAATATTTTAAAAATATTTTAAAATTAAAAAAATAAA
Found at i:56290914 original size:22 final size:22
Alignment explanation
Indices: 56290879--56290932 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
56290869 ATTTAGTCAT
* *
56290879 ATAATAAATCATTAATATAATAA
1 ATAATAATTTATTAATATAA-AA
* *
56290902 AT-ATAATTTATTATTTTAAAA
1 ATAATAATTTATTAATATAAAA
56290923 ATAATAATTT
1 ATAATAATTT
56290933 TAAATAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 4 0.15
22 20 0.77
23 2 0.08
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
ATAATAATTTATTAATATAAAA
Found at i:56299180 original size:23 final size:23
Alignment explanation
Indices: 56299153--56299206 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 23
56299143 AAAATTATTT
56299153 AATATCATTTACT-TACATTTAT-A
1 AATAT-ATTTA-TGTACATTTATCA
*
56299176 AATATTTTTATGTACATTTATCA
1 AATATATTTATGTACATTTATCA
56299199 AATATATT
1 AATATATT
56299207 ATATCAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 1 0.04
22 13 0.48
23 13 0.48
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (23 bp):
AATATATTTATGTACATTTATCA
Found at i:56301296 original size:2 final size:2
Alignment explanation
Indices: 56301289--56301327 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
56301279 GTTACATACC
56301289 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
56301328 CATACATAGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:56304333 original size:12 final size:12
Alignment explanation
Indices: 56304316--56304340 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
56304306 ATTTTTTATG
56304316 AGTAAATAAATA
1 AGTAAATAAATA
56304328 AGTAAATAAATA
1 AGTAAATAAATA
56304340 A
1 A
56304341 AAACAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (12 bp):
AGTAAATAAATA
Found at i:56306435 original size:19 final size:19
Alignment explanation
Indices: 56306411--56306465 Score: 83
Period size: 19 Copynumber: 2.9 Consensus size: 19
56306401 AAATCATATC
*
56306411 TTCTAAGATTGCATATTAT
1 TTCTAAGATTGCATATCAT
*
56306430 TTCTAAGATTACATATCAT
1 TTCTAAGATTGCATATCAT
*
56306449 ATCTAAGATTGCATATC
1 TTCTAAGATTGCATATC
56306466 CTTGAAGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.42
Consensus pattern (19 bp):
TTCTAAGATTGCATATCAT
Found at i:56313200 original size:18 final size:19
Alignment explanation
Indices: 56313161--56313204 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
56313151 GTTATTTAGA
56313161 TATTGTATAATTCTTATTT
1 TATTGTATAATTCTTATTT
*
56313180 TATTGT-TAATT-TTGTTAT
1 TATTGTATAATTCTTATT-T
56313198 TATTGTA
1 TATTGTA
56313205 GAGGCATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.18
18 12 0.55
19 6 0.27
ACGTcount: A:0.25, C:0.02, G:0.09, T:0.64
Consensus pattern (19 bp):
TATTGTATAATTCTTATTT
Found at i:56322757 original size:20 final size:20
Alignment explanation
Indices: 56322734--56322808 Score: 78
Period size: 20 Copynumber: 3.4 Consensus size: 20
56322724 AATTTATTAA
56322734 AATAATAAATATGTATGTTT
1 AATAATAAATATGTATGTTT
56322754 AATAATAAATATGTATGACTAAATAT
1 AATAATAAATATGTATG--T---T-T
56322780 AAATAATTAAATATGTATGTTT
1 -AATAA-TAAATATGTATGTTT
56322802 AATAATA
1 AATAATA
56322809 TTGAAAAATA
Statistics
Matches: 47, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
20 19 0.40
21 5 0.11
22 2 0.04
23 1 0.02
25 1 0.02
26 2 0.04
27 5 0.11
28 12 0.26
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.40
Consensus pattern (20 bp):
AATAATAAATATGTATGTTT
Found at i:56324746 original size:68 final size:68
Alignment explanation
Indices: 56324669--56324818 Score: 187
Period size: 68 Copynumber: 2.2 Consensus size: 68
56324659 ACCCCACTAA
* * ** *
56324669 GGTCTTACACAGTATG-ATCCCATGTTTAATGTCC-CAGTGGACTCTCTTTGTTGCCATAGTCGA
1 GGTCTTACACAATA-GAAACCCATGTTTAATGTCCTCACAGG-CTCCCTTTGTTGCCATAGTCGA
56324732 GCTAT
64 GCTAT
* * * *
56324737 GGTCTTACACAATAGAAACTCATGTTTAATGTCCTGACAGGCTCCCTTTGTTGCCATAGTTGAGT
1 GGTCTTACACAATAGAAACCCATGTTTAATGTCCTCACAGGCTCCCTTTGTTGCCATAGTCGAGC
56324802 TAT
66 TAT
56324805 GGTCTTACACAATA
1 GGTCTTACACAATA
56324819 TAACCTCTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
67 1 0.01
68 67 0.94
69 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (68 bp):
GGTCTTACACAATAGAAACCCATGTTTAATGTCCTCACAGGCTCCCTTTGTTGCCATAGTCGAGC
TAT
Found at i:56327833 original size:46 final size:46
Alignment explanation
Indices: 56327764--56328040 Score: 448
Period size: 46 Copynumber: 6.0 Consensus size: 46
56327754 CATGGCAAAG
56327764 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* **
56327810 TATGAAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
*
56327856 TGTGAAAAGTAGGTATGGTATTTTC-GTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGT-GTTTCGGTGAAGAAAACCATACTGAGT
* *
56327902 TGTTAAAAGTAGGTATGGTGTTTCGGTAAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
56327948 TGTGAAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
56327994 TGTGAAAAGTAGGTATGGTATTTCCGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
56328040 T
1 T
56328041 ATAGCAATGT
Statistics
Matches: 216, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
45 4 0.02
46 208 0.96
47 4 0.02
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.29
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
Found at i:56330112 original size:16 final size:17
Alignment explanation
Indices: 56330080--56330123 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
56330070 AAAAATATAA
56330080 TTTTC-ATTTTCCTATC
1 TTTTCAATTTTCCTATC
*
56330096 TTTTCAATTTTTC-ATC
1 TTTTCAATTTTCCTATC
*
56330112 TTTCCAATTTTC
1 TTTTCAATTTTC
56330124 TTTTTACTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTCAATTTTCCTATC
Found at i:56330420 original size:10 final size:9
Alignment explanation
Indices: 56330399--56330447 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
56330389 GGAGTGGATG
56330399 AAATTATAA
1 AAATTATAA
56330408 AAATTATTAA
1 AAATTA-TAA
56330418 AAATTA-AA
1 AAATTATAA
56330426 AATATT-TAA
1 AA-ATTATAA
*
56330435 AAA-TATTA
1 AAATTATAA
56330443 AAATT
1 AAATT
56330448 GATTGGTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
7 1 0.03
8 10 0.29
9 14 0.41
10 9 0.26
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
AAATTATAA
Found at i:56330423 original size:19 final size:19
Alignment explanation
Indices: 56330403--56330447 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
56330393 TGGATGAAAT
56330403 TATAAAAATTA-TTAAAAA
1 TATAAAAATTATTTAAAAA
56330421 T-TAAAAA-TATTTAAAAA
1 TATAAAAATTATTTAAAAA
*
56330438 TATTAAAATT
1 TATAAAAATT
56330448 GATTGGTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 2 0.09
17 14 0.61
18 6 0.26
19 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TATAAAAATTATTTAAAAA
Found at i:56334923 original size:20 final size:20
Alignment explanation
Indices: 56334893--56334950 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
56334883 CACATTCACT
*
56334893 ATAATTTATAATTTATAAATT
1 ATAA-TTATAATTTATAAATA
* *
56334914 TTAATTATAA-TCATAATATA
1 ATAATTATAATTTATAA-ATA
56334934 ATAATTATAATTT-TAAA
1 ATAATTATAATTTATAAA
56334951 GTTGACATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 6 0.20
20 20 0.67
21 4 0.13
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
ATAATTATAATTTATAAATA
Found at i:56335658 original size:27 final size:26
Alignment explanation
Indices: 56335591--56335656 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 26
56335581 AAAATAATAG
*
56335591 AAAAACTATAAATATTATTAAATATT
1 AAAAAATATAAATATTATTAAATATT
*
56335617 AAAAAATATAGAATATTATTAATATGTT
1 AAAAAATATA-AATATTATTAA-ATATT
*
56335645 ATGAAAATATAA
1 A-AAAAATATAA
56335657 TAATATATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.26
27 11 0.32
28 6 0.18
29 8 0.24
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.36
Consensus pattern (26 bp):
AAAAAATATAAATATTATTAAATATT
Found at i:56335690 original size:21 final size:19
Alignment explanation
Indices: 56335665--56335721 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 19
56335655 AATAATATAT
56335665 AAATTTAGAAATTATAGAAA
1 AAATTTAGAAATTATA-AAA
*
56335685 ACAATTTA-AAAATATAAAA
1 A-AATTTAGAAATTATAAAA
*
56335704 AAGTTATAGAAATATATA
1 AAATT-TAGAAAT-TATA
56335722 TAAATTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
18 3 0.10
19 6 0.20
20 11 0.37
21 10 0.33
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (19 bp):
AAATTTAGAAATTATAAAA
Found at i:56335705 original size:20 final size:21
Alignment explanation
Indices: 56335666--56335705 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
56335656 ATAATATATA
* *
56335666 AATTTAGAAATTATAGAAAAC
1 AATTTAGAAAATATAAAAAAC
56335687 AATTTA-AAAATATAAAAAA
1 AATTTAGAAAATATAAAAAA
56335706 GTTATAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (21 bp):
AATTTAGAAAATATAAAAAAC
Found at i:56335755 original size:20 final size:19
Alignment explanation
Indices: 56335730--56335778 Score: 73
Period size: 18 Copynumber: 2.6 Consensus size: 19
56335720 TATAAATTTA
*
56335730 TAAAAAATTATTAATAGTAT
1 TAAAAAGTTATT-ATAGTAT
56335750 TAAAAAGTTA-TATAGTAT
1 TAAAAAGTTATTATAGTAT
56335768 TAAAAAGTTAT
1 TAAAAAGTTAT
56335779 ATAAATTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 17 0.63
19 1 0.04
20 9 0.33
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (19 bp):
TAAAAAGTTATTATAGTAT
Found at i:56335764 original size:18 final size:18
Alignment explanation
Indices: 56335743--56335781 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
56335733 AAAATTATTA
56335743 ATAGTATTAAAAAGTTAT
1 ATAGTATTAAAAAGTTAT
56335761 ATAGTATTAAAAAGTTAT
1 ATAGTATTAAAAAGTTAT
56335779 ATA
1 ATA
56335782 AATTATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.38
Consensus pattern (18 bp):
ATAGTATTAAAAAGTTAT
Found at i:56335786 original size:17 final size:17
Alignment explanation
Indices: 56335748--56335799 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 17
56335738 TATTAATAGT
*
56335748 ATTAAAAAGTTATATAGT
1 ATTAAAAAGTTATATA-A
56335766 ATTAAAAAGTTATATAA
1 ATTAAAAAGTTATATAA
*
56335783 ATTATAAA-TATATATAA
1 ATTAAAAAGT-TATATAA
56335800 GAAAAATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 1 0.03
17 14 0.45
18 16 0.52
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
ATTAAAAAGTTATATAA
Found at i:56336059 original size:20 final size:20
Alignment explanation
Indices: 56336036--56336086 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
56336026 AAACTATTAG
56336036 AAATTATTAAAATATTATAA
1 AAATTATTAAAATATTATAA
*
56336056 AAATTATT-AAATCTTATAA
1 AAATTATTAAAATATTATAA
56336075 AAATT-TTAAAAT
1 AAATTATTAAAAT
56336087 TACTACTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 2 0.07
19 19 0.66
20 8 0.28
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
AAATTATTAAAATATTATAA
Found at i:56336222 original size:32 final size:30
Alignment explanation
Indices: 56336181--56336244 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
56336171 TAAGCACTTT
56336181 TAAAATAATTAAAAAAATCAATCAAACCATTG
1 TAAAATAATT--AAAAATCAATCAAACCATTG
* * *
56336213 TAAAATAATTTAAAATGAATTAAACCATTG
1 TAAAATAATTAAAAATCAATCAAACCATTG
56336243 TA
1 TA
56336245 CTTTTTCTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 19 0.66
32 10 0.34
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.30
Consensus pattern (30 bp):
TAAAATAATTAAAAATCAATCAAACCATTG
Found at i:56338250 original size:14 final size:15
Alignment explanation
Indices: 56338231--56338259 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
56338221 AAAAAACATG
56338231 TTTTTAAG-TTTTTA
1 TTTTTAAGCTTTTTA
56338245 TTTTTAAGCTTTTTA
1 TTTTTAAGCTTTTTA
56338260 ATTAAAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.21, C:0.03, G:0.07, T:0.69
Consensus pattern (15 bp):
TTTTTAAGCTTTTTA
Found at i:56338478 original size:15 final size:15
Alignment explanation
Indices: 56338460--56338488 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
56338450 CCAATATTAT
56338460 AAATGTAATTATTTC
1 AAATGTAATTATTTC
56338475 AAATGTAATTATTT
1 AAATGTAATTATTT
56338489 TTTCACCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.48
Consensus pattern (15 bp):
AAATGTAATTATTTC
Found at i:56338725 original size:69 final size:70
Alignment explanation
Indices: 56338634--56338766 Score: 189
Period size: 72 Copynumber: 1.9 Consensus size: 70
56338624 TTTTACATAT
*
56338634 AAAAATAATGATATTTGAAATAATTACTT-TTTT-TAATATTAGAATTTACCATACCCACAATGT
1 AAAAATAATGATATTTGAAATAATTACTTATTTTATAATATTAGAATCTACCATACCCACAATGT
56338697 AGGTG
66 AGGTG
* * * *
56338702 AAAATATATTGATATTTGTAATAATTATTTAATTTTATAATATTAGAATCTATCATACCCACAAT
1 AAAA-ATAATGATATTTGAAATAATTACTT-ATTTTATAATATTAGAATCTACCATACCCACAAT
56338767 AAAAGTGGAA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
68 4 0.07
69 22 0.39
71 4 0.07
72 26 0.46
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (70 bp):
AAAAATAATGATATTTGAAATAATTACTTATTTTATAATATTAGAATCTACCATACCCACAATGT
AGGTG
Found at i:56338879 original size:97 final size:99
Alignment explanation
Indices: 56338702--56338881 Score: 224
Period size: 97 Copynumber: 1.8 Consensus size: 99
56338692 AATGTAGGTG
* *
56338702 AAAATATATTGATATTTGTAATAATTATTTAATTTTATAATATTAGAATCTATCATACCCACAAT
1 AAAATATATTGATATTTGAAATAATTAATTAATTTTATAATATTAGAATCTATCATACCCACAAT
* *
56338767 AAAAGTGGAACAAAAATAAATATTTCACATATAA
66 AAAAGTGAAAAAAAAATAAATATTTCACATATAA
* * * *
56338801 AAAATTATATT-ATATTTGAAATGATTAATTAATTTT-T-ATATTAGAATTTATCATATCCGCAA
1 AAAA-TATATTGATATTTGAAATAATTAATTAATTTTATAATATTAGAATCTATCATACCCACAA
* *
56338863 TGTACA-TGAAAAAAAAATA
65 T-AAAAGTGAAAAAAAAATA
56338882 TTTGACATAT
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
97 34 0.49
98 3 0.04
99 26 0.38
100 6 0.09
ACGTcount: A:0.48, C:0.08, G:0.07, T:0.38
Consensus pattern (99 bp):
AAAATATATTGATATTTGAAATAATTAATTAATTTTATAATATTAGAATCTATCATACCCACAAT
AAAAGTGAAAAAAAAATAAATATTTCACATATAA
Found at i:56338896 original size:93 final size:99
Alignment explanation
Indices: 56338702--56338902 Score: 240
Period size: 99 Copynumber: 2.1 Consensus size: 99
56338692 AATGTAGGTG
* *
56338702 AAAA-TATATTGATATTTGTAATAATTATTTAATTTTATAATATTAGAATCTATCATACCCACAA
1 AAAATTATATTGATATTTGAAATAATTAATTAATTTTATAATATTAGAATCTATCATACCCACAA
56338766 TAAAAGTGGAACAAAAATAAATATTTCACATATAA
66 TAAAAGTGGAACAAAAATAAATATTTCACATAT-A
* * * *
56338801 AAAATTATATT-ATATTTGAAATGATTAATTAATTTT-T-ATATTAGAATTTATCATATCCGCAA
1 AAAATTATATTGATATTTGAAATAATTAATTAATTTTATAATATTAGAATCTATCATACCCACAA
* * *
56338863 TGTACA-T-G-A-AAAAA-AAATATTTGACATATA
66 T-AAAAGTGGAACAAAAATAAATATTTCACATATA
56338893 AAAATTATAT
1 AAAATTATAT
56338903 ATCAAAAAAA
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
92 11 0.12
93 14 0.15
94 5 0.05
95 1 0.01
96 1 0.01
97 24 0.26
98 3 0.03
99 26 0.29
100 6 0.07
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.38
Consensus pattern (99 bp):
AAAATTATATTGATATTTGAAATAATTAATTAATTTTATAATATTAGAATCTATCATACCCACAA
TAAAAGTGGAACAAAAATAAATATTTCACATATA
Found at i:56341934 original size:123 final size:124
Alignment explanation
Indices: 56341717--56341955 Score: 383
Period size: 123 Copynumber: 1.9 Consensus size: 124
56341707 GGTCCGGGAA
*
56341717 GAAATAATTTTGAGTTGACGTTTCTGATCAAATAGTATAAAATCGCTTTTAGCAAGATGCTATTT
1 GAAATAATTTT-AGTTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTAGCAAGATGCTATTT
* *
56341782 GAGAAGAATTTGTGAAATCGAGCCTTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAT
65 GAGAAGAATTTGTAAAATCGAGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAT
* *
56341842 GAAATAATTTT-TTTGACGTTTCTGAGT-AAATAGTATAAAATCGCTTCTAGCAGGATGCTATTT
1 GAAATAATTTTAGTTGACGTTTCTGA-TCAAATAGTATAAAATCGCTTCTAGCAAGATGCTATTT
* *
56341905 GAGAATAATTTGTAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
65 GAGAAGAATTTGTAAAATCGAGCCCTCGTGGACGCGCTTTTGCTACAGTAG
56341956 CATGTTTGGG
Statistics
Matches: 106, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
123 94 0.89
124 1 0.01
125 11 0.10
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (124 bp):
GAAATAATTTTAGTTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTAGCAAGATGCTATTTG
AGAAGAATTTGTAAAATCGAGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAT
Found at i:56345326 original size:115 final size:114
Alignment explanation
Indices: 56345083--56345293 Score: 273
Period size: 115 Copynumber: 1.8 Consensus size: 114
56345073 TTGATAAATT
* * * *
56345083 GTATTAATGGTTAGTAAAAATTTCAATTTATATAAAATTATTATTTGTTAGTACTAGTGAAAACA
1 GTATTAAGGGTTAGTAAAAATTTCAAATTATATAAAATTATTAATTGTTAGTACCAGTGAAAACA
** **
56345148 TTTTTCCAAATCTAACATTATGTGAATGTAAAATTATTATCCAATAAATT
66 TTTTTCCAAATCTAACATTATGTGAATGTAAAATTAGGAT-CAATAAAGG
**
56345198 GTATTAATTGTTAGT-AAAATTATCAAATTATATAAAATTATTAATTGTTAGTACCAG-GAAAAA
1 GTATTAAGGGTTAGTAAAAATT-TCAAATTATATAAAATTATTAATTGTTAGTACCAGTG--AAA
56345261 ACATTTTTTCCAAATCTAACATTATGTGAATGT
63 ACA-TTTTTCCAAATCTAACATTATGTGAATGT
56345294 TAAGGGTTAG
Statistics
Matches: 88, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
114 7 0.08
115 46 0.52
116 6 0.07
117 29 0.33
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (114 bp):
GTATTAAGGGTTAGTAAAAATTTCAAATTATATAAAATTATTAATTGTTAGTACCAGTGAAAACA
TTTTTCCAAATCTAACATTATGTGAATGTAAAATTAGGATCAATAAAGG
Found at i:56345347 original size:23 final size:23
Alignment explanation
Indices: 56345321--56345447 Score: 182
Period size: 23 Copynumber: 5.5 Consensus size: 23
56345311 AAGGGTTTAG
56345321 GGTTAGGGTTTTCAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
* *
56345344 GGTTTGGATTTTCAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
****
56345367 GGTTAGGGTTTAGGGTTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
*
56345390 GGTTAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
56345413 GGTTAGGGTTTTCAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
*
56345436 GATTAGGGTTTT
1 GGTTAGGGTTTT
56345448 TTTTTCAATT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 90 1.00
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.49
Consensus pattern (23 bp):
GGTTAGGGTTTTCAATTTAATTA
Found at i:56345457 original size:23 final size:22
Alignment explanation
Indices: 56345323--56345465 Score: 99
Period size: 23 Copynumber: 6.2 Consensus size: 22
56345313 GGGTTTAGGG
* *
56345323 TTAGGGTTTTCAATTTAATTAGG
1 TTAGGGTTTT-TATTTAATTAGA
* * * *
56345346 TTTGGATTTTCAATTTAATTAGG
1 TTAGGGTTTT-TATTTAATTAGA
*** *
56345369 TTAGGGTTTAGGGTTTAATTAGG
1 TTAGGGTTT-TTATTTAATTAGA
*
56345392 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTT-ATTTAATTAGA
*
56345415 TTAGGGTTTTCAATTTAATTAGA
1 TTAGGGTTTT-TATTTAATTAGA
*
56345438 TTAGGGTTTTTTTTTCAATTTA-A
1 TTAGGGTTTTTATTT-AA-TTAGA
56345461 TTAGG
1 TTAGG
56345466 TTAGTAGAAT
Statistics
Matches: 101, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
22 3 0.03
23 95 0.94
24 3 0.03
ACGTcount: A:0.25, C:0.03, G:0.22, T:0.50
Consensus pattern (22 bp):
TTAGGGTTTTTATTTAATTAGA
Found at i:56345549 original size:25 final size:25
Alignment explanation
Indices: 56345517--56345637 Score: 137
Period size: 25 Copynumber: 5.0 Consensus size: 25
56345507 AAAAAAATTT
56345517 TATTTTATTACATCAAATAAACTTC
1 TATTTTATTACATCAAATAAACTTC
56345542 TATTTTATTACATCAAAT-AA-TATC
1 TATTTTATTACATCAAATAAACT-TC
** * * *
56345566 -A--AAATAAC-TCAAAAAAATTTC
1 TATTTTATTACATCAAATAAACTTC
56345587 TATTTTTATTACATCAAATAAACTTC
1 TA-TTTTATTACATCAAATAAACTTC
56345613 TATTTTATTACATCAAATAAACTTC
1 TATTTTATTACATCAAATAAACTTC
56345638 AAAATACTCA
Statistics
Matches: 79, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
20 5 0.06
21 8 0.10
22 2 0.03
23 2 0.03
24 4 0.05
25 45 0.57
26 13 0.16
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (25 bp):
TATTTTATTACATCAAATAAACTTC
Found at i:56345609 original size:71 final size:68
Alignment explanation
Indices: 56345497--56345650 Score: 240
Period size: 71 Copynumber: 2.2 Consensus size: 68
56345487 ATCAAAATAT
*
56345497 TCAAAATA-TTAAAAAAATTTTATTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATA
1 TCAAAATACTCAAAAAAATTTTATTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATA
56345561 ATA-
66 A-AC
56345564 TCAAAATAACTCAAAAAAATTTCTATTTTTATTACATCAAATAAACTTCTATTTTATTACATCAA
1 TCAAAAT-ACTCAAAAAAATTT-TA-TTTTATTACATCAAATAAACTTCTATTTTATTACATCAA
56345629 ATAAAC
63 ATAAAC
56345635 TTCAAAATACTCAAAA
1 -TCAAAATACTCAAAA
56345651 TATTTGTACA
Statistics
Matches: 80, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
67 7 0.09
68 1 0.01
69 11 0.14
70 3 0.04
71 51 0.64
72 7 0.09
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (68 bp):
TCAAAATACTCAAAAAAATTTTATTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATA
AAC
Found at i:56346978 original size:20 final size:20
Alignment explanation
Indices: 56346941--56346978 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
56346931 TTTATTTTTA
*
56346941 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
56346961 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
56346979 TATCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:56351010 original size:96 final size:98
Alignment explanation
Indices: 56350827--56351140 Score: 319
Period size: 96 Copynumber: 3.0 Consensus size: 98
56350817 AGAAAAACGA
* * *
56350827 AAAAAAAATTTTGGGTGTTGGCCTGTCAATAGCCGACACCCAGTACAATTTTTTTTTAAAAAAAT
1 AAAAAAAA--TTGGGTGCTGACCTGTCAATGGCCGACACCCAGTACAA----TTTTT--AAAAA-
* *
56350892 TCTTTTTTTTGTTGTCAGAATCAGATATAAATATATG-AAAAAAT
57 ---TTTTTTTGTTGTCAAAATCAAATATAAATATATGAAAAAAAT
* *
56350936 AAAAAAATTTTGGGTGCTGACCTGTCAATGGCCGGCACCCAGTACAA-TTTTAAAAATTTTTTTG
1 AAAAAAA-ATTGGGTGCTGACCTGTCAATGGCCGACACCCAGTACAATTTTTAAAAATTTTTTTG
56351000 -TGTCAAAATCAAATATAAATATATGAAAAAAAT
65 TTGTCAAAATCAAATATAAATATATGAAAAAAAT
* *
56351033 AAAAAAAATTGGGTGCTGGCCTGTCAATGGCTGACACCCAGTACAATTTTTAAAAAAAATCTTTT
1 AAAAAAAATTGGGTGCTGACCTGTCAATGGCCGACACCCAGTACAATTTTT---AAAAA--TTTT
* * *
56351098 TTTTTCGTGTCTAAATCAAATATAAATATACGAAAAAAAT
61 TTTGT--TGTCAAAATCAAATATAAATATATGAAAAAAAT
56351138 AAA
1 AAA
56351141 CATAATTATA
Statistics
Matches: 180, Mismatches: 14, Indels: 26
0.82 0.06 0.12
Matches are distributed among these distances:
96 58 0.32
97 26 0.14
100 5 0.03
101 5 0.03
102 7 0.04
103 4 0.02
105 34 0.19
108 34 0.19
109 7 0.04
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (98 bp):
AAAAAAAATTGGGTGCTGACCTGTCAATGGCCGACACCCAGTACAATTTTTAAAAATTTTTTTGT
TGTCAAAATCAAATATAAATATATGAAAAAAAT
Found at i:56353966 original size:195 final size:195
Alignment explanation
Indices: 56353589--56354192 Score: 681
Period size: 195 Copynumber: 3.0 Consensus size: 195
56353579 AAAGAATTTT
* * *
56353589 TTTTAATATTGTACTGGGTGTCGCCCATTGACAGACCAGCACTCAAAAATTTTTTTATTTTTTTC
1 TTTTAATATTGTACTGGGTGCCGGCCA-TGACAG-CCA-CA--C-AAATTTTTTTTATTTTTTTC
* *** *
56353654 GTATATTTATATCTGATTCTGACACGAAAAAAATTTTTTAAATTGTACTGGGTGCCGGCCATTGA
60 GTATATTTATATCTGATTCTGACAAGAAAATTTTTTTTTTAATTGTACTGGGTGCCGGCCATTGA
* * *
56353719 AAGGCCAGCACCCAAATTTTTTTAATTTTTTTTGTATATTTATATCTGATTCTGACACGAAAAAA
125 AAGGCCAGCACCCAAATTTTTTTTATTTTTTTCGTATATTTATATCTGATTCTGACATGAAAAAA
56353784 AAAAGAA
190 AAAA-AA
*
56353791 TTTTTTTTTAA-ATTGTACTGGGTGCCGG-CA-G-CA-CC-CA-AATTTTTTTTTTATTTTTTTC
1 -----TTTTAATATTGTACTGGGTGCCGGCCATGACAGCCACACAA-ATTTTTTTTATTTTTTTC
*
56353849 GTATATTTATATCTGATTCTGACAAGAAAATTTTTTTTTTAATTGTACTAGGTGCCGGCCATTGA
60 GTATATTTATATCTGATTCTGACAAGAAAATTTTTTTTTTAATTGTACTGGGTGCCGGCCATTGA
* * * *
56353914 TAGGCCAGCACCCAAATTTTTTTTATTTTTTTCGTATACTGATATTTGATTCTGACATG--AAAA
125 AAGGCCAGCACCCAAATTTTTTTTATTTTTTTCGTATATTTATATCTGATTCTGACATGAAAAAA
56353977 AAAAAA
190 AAAAAA
*
56353983 TTTTAATATTGTACTGGGTGTCGGCCATTGACAGGCCAGCACCAAATTTTTTTTATTTTTTTCGT
1 TTTTAATATTGTACTGGGTGCCGGCCA-TGACA-GCCA-CA-CAAATTTTTTTTATTTTTTTCGT
*
56354048 ATATTTATATCTGATTCTGACACGAAAAAAAAGAATTTTTTTTTTAAAATTGTACTGGGTGCCGG
62 ATATTTATATCTGATTCTG--AC----AAGAA-AATTTTTTTTTT--AATTGTACTGGGTGCCGG
*
56354113 CCATTGGCAA-GCCAGCA-CCAAATTTTTTTTTTATTTTTTTCGTATATTTATATCTGATTCTGA
118 CCATT-GAAAGGCCAGCACCCAAA--TTTTTTTTATTTTTTTCGTATATTTATATCTGATTCTGA
56354176 CATGAAAAAAAAGAAAA
180 CATGAAAAAAAA-AAAA
56354193 AAAAATTTAA
Statistics
Matches: 344, Mismatches: 26, Indels: 51
0.82 0.06 0.12
Matches are distributed among these distances:
187 6 0.02
188 16 0.05
189 2 0.01
191 1 0.00
192 4 0.01
193 8 0.02
194 4 0.01
195 127 0.37
196 2 0.01
197 38 0.11
198 4 0.01
199 2 0.01
200 2 0.01
202 2 0.01
203 5 0.01
204 12 0.03
205 7 0.02
206 44 0.13
207 48 0.14
209 6 0.02
210 4 0.01
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (195 bp):
TTTTAATATTGTACTGGGTGCCGGCCATGACAGCCACACAAATTTTTTTTATTTTTTTCGTATAT
TTATATCTGATTCTGACAAGAAAATTTTTTTTTTAATTGTACTGGGTGCCGGCCATTGAAAGGCC
AGCACCCAAATTTTTTTTATTTTTTTCGTATATTTATATCTGATTCTGACATGAAAAAAAAAAAA
Found at i:56354112 original size:294 final size:300
Alignment explanation
Indices: 56353585--56354183 Score: 867
Period size: 294 Copynumber: 2.0 Consensus size: 300
56353575 CAAAAAAGAA
* *
56353585 TTTTTTTTAATATTGTACTGGGTGTCGCCCATTGACAGACCAGCACTCAAAAATTTTTTTATTTT
1 TTTTTTTTAATATTGTACTAGGTGCCGCCCATTGACAGACCAGCACTCAAAAATTTTTTTATTTT
* * **
56353650 TTTCGTATATTTATATCTGATTCTGACACGAAAAAAATTTTTTAAATTGTACTGGGTGCCGGCCA
66 TTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAATTTTAAATTGTACTGGGTGCCGGCCA
*
56353715 TTGAAAGGCCAGCACCCAAATTTTTTTAATTTTTTTTGTATATTTATATCTGATTCTGACACGAA
131 TTGAAAGGCCAGCACCCAAATTTTTTTAATTTTTTTCGTATATTTATATCTGATTCTGACACG-A
56353780 AAAAAAAAGAATTTTTTTTTAAATTGTACTGGGT-GCC-GGC-AG-CA-C-CCAAATTTTTTTTT
195 AAAAAAAAGAATTTTTTTTTAAATTGTACTGGGTCGCCTGGCAAGCCAGCACCAAATTTTTTTTT
56353839 TATTTTTTTCGTATATTTATATCTGATTCTGACAAGAAAAT
260 TATTTTTTTCGTATATTTATATCTGATTCTGACAAGAAAAT
* * * * * *
56353880 TTTTTTTTTA-ATTGTACTAGGTGCCGGCCATTGATAGGCCAGCAC-CCAAATTTTTTTTATTTT
1 TTTTTTTTAATATTGTACTAGGTGCCGCCCATTGACAGACCAGCACTCAAAAATTTTTTTATTTT
* * *
56353943 TTTCGTATACTGATATTTGATTCTGACATGAAAAAAAAAATTTTAATATTGTACTGGGTGTCGGC
66 TTTCGTATACTGATATCTGATTCTGACACG-AAAAAAAAATTTTAA-ATTGTACTGGGTGCCGGC
* *
56354008 CATTGACAGGCCAGCA-CCAAATTTTTTTTATTTTTTTCGTATATTTATATCTGATTCTGACACG
129 CATTGAAAGGCCAGCACCCAAATTTTTTTAATTTTTTTCGTATATTTATATCTGATTCTGACACG
56354072 -AAAAAAAAGAATTTTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGGCAAGCCAGCACCAAAT
194 AAAAAAAAAGAA-TTTTTTTTT-AAATTGTACTGGGT--C-GCC--TGGCAAGCCAGCACCAAAT
*
56354136 TTTTTTTTTATTTTTTTCGTATATTTATATCTGATTCTGACATGAAAA
252 TTTTTTTTTATTTTTTTCGTATATTTATATCTGATTCTGACAAGAAAA
56354184 AAAAGAAAAA
Statistics
Matches: 270, Mismatches: 19, Indels: 20
0.87 0.06 0.06
Matches are distributed among these distances:
292 11 0.04
293 51 0.19
294 103 0.38
295 41 0.15
298 3 0.01
301 3 0.01
302 2 0.01
303 2 0.01
304 1 0.00
305 53 0.20
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.42
Consensus pattern (300 bp):
TTTTTTTTAATATTGTACTAGGTGCCGCCCATTGACAGACCAGCACTCAAAAATTTTTTTATTTT
TTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAATTTTAAATTGTACTGGGTGCCGGCCA
TTGAAAGGCCAGCACCCAAATTTTTTTAATTTTTTTCGTATATTTATATCTGATTCTGACACGAA
AAAAAAAGAATTTTTTTTTAAATTGTACTGGGTCGCCTGGCAAGCCAGCACCAAATTTTTTTTTT
ATTTTTTTCGTATATTTATATCTGATTCTGACAAGAAAAT
Found at i:56354127 original size:106 final size:105
Alignment explanation
Indices: 56353585--56354254 Score: 695
Period size: 99 Copynumber: 6.6 Consensus size: 105
56353575 CAAAAAAGAA
* * * * *
56353585 TTTTTTTTAATATTGTACTGGGTGTCGCCCATTGACAGACCAGCACTCAAAAATTTTTTTATTTT
1 TTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCAC-C-AAATTTTTTTTATTTT
56353650 TTTCGTATATTTATATCTGATTCTGACACG---AAAAAAA--
64 TTTCGTATATTTATATCTGATTCTGACACGAAAAAAAAAATT
* *
56353687 --TTTTTT-AAATTGTACTGGGTGCCGGCCATTGAAAGGCCAGCACCCAAATTTTTTTAATTTTT
1 TTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCA-CCAAATTTTTTTTATTTTT
* *
56353749 TTTGTATATTTATATCTGATTCTGACACGAAAAAAAAAAGAAT
65 TTCGTATATTTATATCTGATTCTGACACG-AAAAAAAAA-ATT
*
56353792 TTTTTTTT-AAATTGTACTGGGTGCCGG-CA--G-CA--CC--CA--AATTTTTTTTTTATTTTT
1 TTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAA-ATTTTTTTTATTTTT
*
56353846 TTCGTATATTTATATCTGATTCTG--AC----AAGAAAATT
65 TTCGTATATTTATATCTGATTCTGACACGAAAAAAAAAATT
* *
56353881 TTTTTTTT--AATTGTACTAGGTGCCGGCCATTGATAGGCCAGCACCCAAATTTTTTTTATTTTT
1 TTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCA-CCAAATTTTTTTTATTTTT
* * * *
56353944 TTCGTATACTGATATTTGATTCTGACATGAAAAAAAAAA--
65 TTCGTATATTTATATCTGATTCTGACACGAAAAAAAAAATT
* *
56353983 ----TTTTAATATTGTACTGGGTGTCGGCCATTGACAGGCCAGCACCAAATTTTTTTTATTTTTT
1 TTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTATTTTTT
56354044 TCGTATATTTATATCTGATTCTGACACGAAAAAAAAGAATT
66 TCGTATATTTATATCTGATTCTGACACGAAAAAAAA-AATT
* *
56354085 TTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGGCAAGCCAGCACCAAATTTTTTTTTTATTTT
1 TTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAAA--TTTTTTTTATTTT
* **
56354150 TTTCGTATATTTATATCTGATTCTGACATGAAAAAAAAGAAAAA
64 TTTCGTATATTTATATCTGATTCTGACACG-AAAAAAA-AAATT
**** * * *
56354194 AAAATTTAAAAATTGTACTGGGTGCCGACCATTGACAGGCCAACACCCAAAATATTTTTTT
1 TTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCA-CC-AAAT-TTTTTTT
56354255 CGTTTTTCTT
Statistics
Matches: 478, Mismatches: 46, Indels: 80
0.79 0.08 0.13
Matches are distributed among these distances:
88 17 0.04
89 12 0.03
90 5 0.01
91 1 0.00
92 1 0.00
94 2 0.00
95 2 0.00
96 4 0.01
97 36 0.08
98 82 0.17
99 88 0.18
100 41 0.09
101 2 0.00
102 6 0.01
103 2 0.00
104 7 0.01
106 44 0.09
107 25 0.05
108 42 0.09
109 46 0.10
110 10 0.02
111 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.40
Consensus pattern (105 bp):
TTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTATTTTTT
TCGTATATTTATATCTGATTCTGACACGAAAAAAAAAATT
Found at i:56354202 original size:108 final size:107
Alignment explanation
Indices: 56353889--56354254 Score: 426
Period size: 108 Copynumber: 3.5 Consensus size: 107
56353879 TTTTTTTTTT
* * *
56353889 AATTGTACTAGGTGCCGGCCATTGATAGGCCAGCACCCAAA-TTTTTTTTATTTTTTTCGTATAC
1 AATTGTACTGGGTGCCGGCCATTGACAGGCCAGCA-CCAAATTTTTTTTTATTTTTTTCGTATAT
* * * *
56353953 TGATATTTGATTCTGACATG------AA-AAAAAAAATTTTAA
65 TTATATCTGATTCTGACACGAAAAAAAAGAAAAAAAAATTTAA
* *
56353989 TATTGTACTGGGTGTCGGCCATTGACAGGCCAGCACCAAA-TTTTTTTTATTTTTTTCGTATATT
1 AATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTATTTTTTTCGTATATT
*******
56354053 TATATCTGATTCTGACACGAAAAAAAAGAATTTTTTTTTTAA
66 TATATCTGATTCTGACACGAAAAAAAAGAAAAAAAAATTTAA
* *
56354095 AATTGTACTGGGTGCCGGCCATTGGCAAGCCAGCACCAAATTTTTTTTTTATTTTTTTCGTATAT
1 AATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAAA-TTTTTTTTTATTTTTTTCGTATAT
*
56354160 TTATATCTGATTCTGACATGAAAAAAAAGAAAAAAAAATTTAAA
65 TTATATCTGATTCTGACACGAAAAAAAAGAAAAAAAAATTT-AA
* * *
56354204 AATTGTACTGGGTGCCGACCATTGACAGGCCAACACCCAAAATATTTTTTT
1 AATTGTACTGGGTGCCGGCCATTGACAGGCCAGCA-CC-AAATTTTTTTTT
56354255 CGTTTTTCTT
Statistics
Matches: 223, Mismatches: 31, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
99 44 0.20
100 31 0.14
105 2 0.01
106 44 0.20
108 56 0.25
109 33 0.15
110 10 0.04
111 3 0.01
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (107 bp):
AATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTATTTTTTTCGTATATT
TATATCTGATTCTGACACGAAAAAAAAGAAAAAAAAATTTAA
Found at i:56356605 original size:26 final size:25
Alignment explanation
Indices: 56356576--56356630 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
56356566 AAATTAAGGG
*
56356576 TTAAATTTAATTAAAAAAGATAAAAA
1 TTAAA-TTAATAAAAAAAGATAAAAA
* * *
56356602 TTAAATTGATAAAAAAATATAAATA
1 TTAAATTAATAAAAAAAGATAAAAA
56356627 TTAA
1 TTAA
56356631 GAGCTAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (25 bp):
TTAAATTAATAAAAAAAGATAAAAA
Found at i:56357630 original size:19 final size:19
Alignment explanation
Indices: 56357599--56357658 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 19
56357589 ATTTTATAAT
*
56357599 TTTTATAAA-TATTTTGAA
1 TTTTAAAAATTATTTTGAA
*
56357617 TTTTAAAAATTATTTTCAAA
1 TTTTAAAAATTATTTT-GAA
* *
56357637 TTTTGAAAATTACTTTG-A
1 TTTTAAAAATTATTTTGAA
56357655 TTTT
1 TTTT
56357659 TTTTAATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 13 0.37
19 6 0.17
20 16 0.46
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:56358337 original size:6 final size:6
Alignment explanation
Indices: 56358326--56358552 Score: 363
Period size: 6 Copynumber: 40.0 Consensus size: 6
56358316 TTAAAATGAG
56358326 TATATA TATATA TATATA TATATA TATATA TATATA TATATA -ATA-A
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
56358372 TA-ATA -ATA-A TA-ATA -ATA-A TA-ATA -ATA-A TA-ATA -ATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
56358409 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
56358457 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
56358505 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
56358553 NNNNNNNNNN
Statistics
Matches: 208, Mismatches: 0, Indels: 26
0.89 0.00 0.11
Matches are distributed among these distances:
4 12 0.06
5 17 0.08
6 179 0.86
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
TATATA
Found at i:56358373 original size:3 final size:3
Alignment explanation
Indices: 56358365--56358406 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
56358355 ATATATATAT
56358365 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
56358407 TATATATATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:56358771 original size:2 final size:2
Alignment explanation
Indices: 56358759--56358805 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
56358749 GCACTGTCCC
56358759 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
56358800 TA TA TA
1 TA TA TA
56358806 ATAAATAGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:56361217 original size:11 final size:11
Alignment explanation
Indices: 56361203--56361246 Score: 61
Period size: 11 Copynumber: 3.8 Consensus size: 11
56361193 AGATAAATAT
56361203 TATTTTATTAA
1 TATTTTATTAA
*
56361214 TATTTTAATAAAA
1 TATTTT-AT-TAA
56361227 TATTTTATTAA
1 TATTTTATTAA
56361238 TATTTTATT
1 TATTTTATT
56361247 TAGTATATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 17 0.59
12 4 0.14
13 8 0.28
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:56363273 original size:33 final size:33
Alignment explanation
Indices: 56363236--56363377 Score: 113
Period size: 33 Copynumber: 4.2 Consensus size: 33
56363226 TTTTAATGAA
*
56363236 AAGACCATAACTGGGTTATGACACTATGAACGT
1 AAGACCATAACTGGGCTATGACACTATGAACGT
*** ** * * * * * *
56363269 AAGACCATGGTTGAACCATGAGAGTGTTTATATGT
1 AAGACCATAACTGGGCTATGACACT-ATGA-ACGT
* * * *
56363304 AAGACCATAACTGGGCTATGACATTCTGATCAT
1 AAGACCATAACTGGGCTATGACACTATGAACGT
*
56363337 AAGACCATAACTGGGCTATGGCACTATGAACGT
1 AAGACCATAACTGGGCTATGACACTATGAACGT
56363370 AAGACCAT
1 AAGACCAT
56363378 GGTTGGACCA
Statistics
Matches: 77, Mismatches: 30, Indels: 4
0.69 0.27 0.04
Matches are distributed among these distances:
33 53 0.69
34 4 0.05
35 20 0.26
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (33 bp):
AAGACCATAACTGGGCTATGACACTATGAACGT
Found at i:56363342 original size:101 final size:101
Alignment explanation
Indices: 56363167--56363472 Score: 384
Period size: 101 Copynumber: 3.0 Consensus size: 101
56363157 AATTGACGGA
* * *** * * * *
56363167 TAAGACCATGGTTGGACCATGGAAATGTTTA-ACTGTAAGACCATGGTTGAGCTGTGGCATTTTA
1 TAAGACCATGGTTGAACCATGGTAATGTTTATA-TGTAAGACCATAACTGGGCTATGACATTCTA
*
56363231 ATGAA-AAGACCATAACTGGGTTATGACACTATGAACG
65 AT-AATAAGACCATAACTGGGTTATGGCACTATGAACG
* *
56363268 TAAGACCATGGTTGAACCATGAG-AGTGTTTATATGTAAGACCATAACTGGGCTATGACATTCTG
1 TAAGACCATGGTTGAACCATG-GTAATGTTTATATGTAAGACCATAACTGGGCTATGACATTCTA
* *
56363332 ATCATAAGACCATAACTGGGCTATGGCACTATGAACG
65 ATAATAAGACCATAACTGGGTTATGGCACTATGAACG
* * * *
56363369 TAAGACCATGGTTGGACCATGGTAATTTTTATATGTAAGACCATAGCTGGGCTATGGCATTCTAA
1 TAAGACCATGGTTGAACCATGGTAATGTTTATATGTAAGACCATAACTGGGCTATGACATTCTAA
* *
56363434 TAATAAGACCATAACTGGGTTATGGCACTACGAATG
66 TAATAAGACCATAACTGGGTTATGGCACTATGAACG
56363470 TAA
1 TAA
56363473 AGGATGAATT
Statistics
Matches: 178, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
100 2 0.01
101 174 0.98
102 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (101 bp):
TAAGACCATGGTTGAACCATGGTAATGTTTATATGTAAGACCATAACTGGGCTATGACATTCTAA
TAATAAGACCATAACTGGGTTATGGCACTATGAACG
Found at i:56363446 original size:33 final size:32
Alignment explanation
Indices: 56363303--56363460 Score: 122
Period size: 33 Copynumber: 4.8 Consensus size: 32
56363293 TGTTTATATG
* *
56363303 TAAGACCATAACTGGGCTATGACATTCTGATCA
1 TAAGACCATAACTGGGCTATGGCATTCT-ATAA
56363336 TAAGACCATAACTGGGCTATGGCA--CTATGAA
1 TAAGACCATAACTGGGCTATGGCATTCTAT-AA
*** * * * * *
56363367 CGTAAGACCATGGTTGGACCATGGTAATTTTTATATG
1 --TAAGACCATAACTGGGCTATGG-CA-TTCTATA-A
*
56363404 TAAGACCATAGCTGGGCTATGGCATTCTAATAA
1 TAAGACCATAACTGGGCTATGGCATTCT-ATAA
*
56363437 TAAGACCATAACTGGGTTATGGCA
1 TAAGACCATAACTGGGCTATGGCA
56363461 CTACGAATGT
Statistics
Matches: 97, Mismatches: 19, Indels: 18
0.72 0.14 0.13
Matches are distributed among these distances:
30 2 0.02
31 3 0.03
33 65 0.67
34 5 0.05
35 18 0.19
36 1 0.01
37 3 0.03
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (32 bp):
TAAGACCATAACTGGGCTATGGCATTCTATAA
Found at i:56363521 original size:25 final size:25
Alignment explanation
Indices: 56363466--56363531 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
56363456 TGGCACTACG
*
56363466 AATGTAAAGGATGA-ATTGACGGAA
1 AATGTAAAGGATGATATTGACAGAA
56363490 AATGTAAAGGATGATATATGA-AGAA
1 AATGTAAAGGATGATAT-TGACAGAA
*
56363515 ACA-GTAAAAGATGATAT
1 A-ATGTAAAGGATGATAT
56363532 GTATCATGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
24 14 0.38
25 19 0.51
26 4 0.11
ACGTcount: A:0.50, C:0.03, G:0.24, T:0.23
Consensus pattern (25 bp):
AATGTAAAGGATGATATTGACAGAA
Found at i:56365950 original size:42 final size:41
Alignment explanation
Indices: 56365864--56365951 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 41
56365854 CACAGAAGCA
* * * *
56365864 CATAAGTGCTAAACAGAAACCCGTAAAGGTTGAACGGAAGCT
1 CATAAGAGCTAAACAGAAACCCG-AAAGGTTAAACGAAAACT
*
56365906 CATAAGAGCTAAACAGAAACCC-AATAGGGTTAAACTAAAACT
1 CATAAGAGCTAAACAGAAACCCGAA-A-GGTTAAACGAAAACT
56365948 CATA
1 CATA
56365952 TGAGTTAACT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
40 2 0.05
41 1 0.03
42 36 0.92
ACGTcount: A:0.45, C:0.19, G:0.18, T:0.17
Consensus pattern (41 bp):
CATAAGAGCTAAACAGAAACCCGAAAGGTTAAACGAAAACT
Found at i:56365958 original size:21 final size:21
Alignment explanation
Indices: 56365904--56365981 Score: 54
Period size: 21 Copynumber: 3.8 Consensus size: 21
56365894 TGAACGGAAG
*
56365904 CTCATAAGAGCTAAAC-AGAAA
1 CTCATAAGAGTTAAACTA-AAA
* *
56365925 CCCA-ATAGGGTTAAACTAAAA
1 CTCATA-AGAGTTAAACTAAAA
* * *
56365946 CTCATATGAGTT-AACTGAAG
1 CTCATAAGAGTTAAACTAAAA
*
56365966 CTCATAAGAGCTAAAC
1 CTCATAAGAGTTAAAC
56365982 GGAAAGCAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 8
0.70 0.16 0.13
Matches are distributed among these distances:
20 17 0.40
21 24 0.56
22 2 0.05
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.21
Consensus pattern (21 bp):
CTCATAAGAGTTAAACTAAAA
Found at i:56379985 original size:21 final size:21
Alignment explanation
Indices: 56379960--56380007 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
56379950 TTAGTATGAT
56379960 TTTAAAATATAAAATATATTA
1 TTTAAAATATAAAATATATTA
* * * *
56379981 TTTAAATTGTTAATTATATTA
1 TTTAAAATATAAAATATATTA
56380002 TTTAAA
1 TTTAAA
56380008 TGCATTATAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
TTTAAAATATAAAATATATTA
Found at i:56380129 original size:2 final size:2
Alignment explanation
Indices: 56380122--56380152 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
56380112 TGATAAAATT
56380122 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
56380153 TTGATGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:56390745 original size:44 final size:44
Alignment explanation
Indices: 56390675--56391102 Score: 328
Period size: 44 Copynumber: 9.6 Consensus size: 44
56390665 CATGTTTCAC
* *
56390675 AGATAGCAGATCCTGTCTTTCTATATTGGTAGCGAAGT-GAATCGA
1 AGAT-GCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAG-ATCGA
* * * *
56390720 ATATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGA
1 AGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGA
* * * * * *
56390764 AGAAAGCAGATCTTGTCTTCATGTCTTGG-CGTGAAGTAGATCGA
1 AG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGA
* * *
56390808 AGATAACAGAT-TCTGTCTTCCTATATTGGTAGTGAAGTGGATCGA
1 AGAT-GCAGATCT-TGTCTTCCTATATTGGTAGCGAAGTAGATCGA
* * * * *
56390853 AGATGCAGATCTTGTCTTCCCATACTAGTGGCAAAGTAGATCGA
1 AGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGA
* * * * *
56390897 AGAAAGCAGATCTTGTCTTCATGTATT-GTCA-TGAAGTGGATCGA
1 AG-ATGCAGATCTTGTCTTCCTATATTGGT-AGCGAAGTAGATCGA
* * *
56390941 AGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGA
1 AGAT-GCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGA
* * * *
56390986 AGATGCATATCTTGTCTTCCCATATTGGTGGCGGAGTAGATCGA
1 AGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGA
* * * * * ** *
56391030 AGAAAGCATATCTTGTCTTCATGTATTGG-CGTAAAGTGGATCGA
1 AG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGA
* * * *
56391074 AAATAGTAGATCCTGTCTTCTTATATTGG
1 AGAT-GCAGATCTTGTCTTCCTATATTGG
56391103 CAGTGAGGCA
Statistics
Matches: 302, Mismatches: 68, Indels: 27
0.76 0.17 0.07
Matches are distributed among these distances:
43 4 0.01
44 196 0.65
45 102 0.34
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (44 bp):
AGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGA
Found at i:56390834 original size:89 final size:89
Alignment explanation
Indices: 56390725--56391102 Score: 331
Period size: 89 Copynumber: 4.3 Consensus size: 89
56390715 ATCGAATATG
* * *
56390725 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGAAGAAAGCAGATCTTGTCTTCATGTCT
1 CAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
*
56390790 TGGCGTGAAGTAGATCGAAGATAA
66 TGGCGTAAAGTAGATCGAAGATAA
* * * *
56390814 CAGAT-TCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATA
1 CAGATCT-TGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT--CAT-
* *
56390877 CTAGTGGC--AAAGTAGATCGAAGA-AA
62 GTATTGGCGTAAAGTAGATCGAAGATAA
* * *** * * * *
56390902 GCAGATCTTGTCTTCATGTATT-GTCATGAAGTGGATCGAAGATAA-CAGATCCTGTCTTCCTAT
1 -CAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATGT
* ** * *
56390965 ATTGGTAGCGAAGTGGATCGAAGAT-G
64 ATTGG-CGTAAAGTAGATCGAAGATAA
* * * *
56390991 CATATCTTGTCTTCCCATATTGGTGGCGGAGTAGATCGAAGAAAGCATATCTTGTCTTCATGTAT
1 CAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
* * *
56391056 TGGCGTAAAGTGGATCGAAAATAG
66 TGGCGTAAAGTAGATCGAAGATAA
* * *
56391080 TAGATCCTGTCTTCTTATATTGG
1 CAGATCTTGTCTTCCTATATTGG
56391103 CAGTGAGGCA
Statistics
Matches: 229, Mismatches: 45, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
86 5 0.02
87 2 0.01
88 69 0.30
89 143 0.62
90 5 0.02
91 5 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (89 bp):
CAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
TGGCGTAAAGTAGATCGAAGATAA
Found at i:56390913 original size:133 final size:133
Alignment explanation
Indices: 56390675--56391102 Score: 658
Period size: 133 Copynumber: 3.2 Consensus size: 133
56390665 CATGTTTCAC
* * * *
56390675 AGATAGCAGATCCTGTCTTTCTATATTGGTAGCGAAGTGAATCGAATATGCAGATCTTGTCTTCC
1 AGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
* * *
56390740 CATATTGGTGGCGAAGTAGATTGAAGAAAGCAGATCTTGTCTTCATGTCTTGGCGTGAAGTAGAT
66 CATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTGGAT
56390805 CGA
131 CGA
* *
56390808 AGATAACAGATTCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
1 AGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
* * * * *
56390873 CATACTAGTGGCAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGTCATGAAGTGGAT
66 CATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTGGAT
56390938 CGA
131 CGA
*
56390941 AGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCATATCTTGTCTTCC
1 AGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
* * *
56391006 CATATTGGTGGCGGAGTAGATCGAAGAAAGCATATCTTGTCTTCATGTATTGGCGTAAAGTGGAT
66 CATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTGGAT
56391071 CGA
131 CGA
* ** *
56391074 AAATAGTAGATCCTGTCTTCTTATATTGG
1 AGATAACAGATCCTGTCTTCCTATATTGG
56391103 CAGTGAGGCA
Statistics
Matches: 266, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 266 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (133 bp):
AGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
CATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTGGAT
CGA
Found at i:56397480 original size:57 final size:56
Alignment explanation
Indices: 56397387--56397501 Score: 203
Period size: 57 Copynumber: 2.0 Consensus size: 56
56397377 CTTTTACTTT
*
56397387 TGGTGGATAGAATTCCCTTAACTGTTCTCATAAATTGAGAATTCATTTGTGTTTGA
1 TGGTGGATAGAATTCCCTTAACTGTTCTCATAAATTGAGAATTCACTTGTGTTTGA
*
56397443 TGGTGGATAGAATTCCCTTTAACTTTTCTCATAAATTGAGAATTCACTTGTGTTTGA
1 TGGTGGATAGAATTCCC-TTAACTGTTCTCATAAATTGAGAATTCACTTGTGTTTGA
56397500 TG
1 TG
56397502 ATATGAAATT
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
56 17 0.30
57 39 0.70
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (56 bp):
TGGTGGATAGAATTCCCTTAACTGTTCTCATAAATTGAGAATTCACTTGTGTTTGA
Found at i:56406192 original size:5 final size:5
Alignment explanation
Indices: 56406182--56406207 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
56406172 CATTGCTTTC
56406182 TCTAG TCTAG TCTAG TCTAG TCTAG T
1 TCTAG TCTAG TCTAG TCTAG TCTAG T
56406208 GTAGGTCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TCTAG
Found at i:56434215 original size:46 final size:46
Alignment explanation
Indices: 56434148--56434286 Score: 233
Period size: 46 Copynumber: 3.0 Consensus size: 46
56434138 TGGCAAAGTG
*
56434148 TGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGTTA
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
*
56434194 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTG
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
* * *
56434240 TGAAAAGTAGGTATGGTATTTCCGTGAAGAAAGCCATACTGAGTTA
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
56434286 T
1 T
56434287 AGCAATGTGA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 87 1.00
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (46 bp):
TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
Found at i:56446173 original size:21 final size:21
Alignment explanation
Indices: 56446140--56446194 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
56446130 CAGATTAACC
* *
56446140 CTTCTGGGTTTCAGTTCAGCT
1 CTTCTGAGCTTCAGTTCAGCT
* *
56446161 CTTTTGAGCTTCAGTTTAGCT
1 CTTCTGAGCTTCAGTTCAGCT
56446182 CTTCTGAGCTTCA
1 CTTCTGAGCTTCA
56446195 TATTAACCCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.13, C:0.24, G:0.20, T:0.44
Consensus pattern (21 bp):
CTTCTGAGCTTCAGTTCAGCT
Found at i:56453027 original size:19 final size:21
Alignment explanation
Indices: 56453003--56453043 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
56452993 TTATTTTAAC
56453003 ATTTTT-CAATTTTAAA-ATA
1 ATTTTTACAATTTTAAATATA
*
56453022 ATTTTTATAATTTTAAATATA
1 ATTTTTACAATTTTAAATATA
56453043 A
1 A
56453044 AATATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 9 0.47
21 4 0.21
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTTTTACAATTTTAAATATA
Found at i:56453242 original size:16 final size:16
Alignment explanation
Indices: 56453221--56453275 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
56453211 GTTTGGTTCA
56453221 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
56453237 CTGTAAAT-GAATAGAG
1 CTGT-AATGGAATAGAG
*
56453253 CTGTAATGGAATAAAG
1 CTGTAATGGAATAGAG
*
56453269 TTGTAAT
1 CTGTAAT
56453276 CAGTAATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 3 0.09
16 29 0.83
17 3 0.09
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:56457931 original size:3 final size:3
Alignment explanation
Indices: 56457925--56457976 Score: 68
Period size: 3 Copynumber: 17.0 Consensus size: 3
56457915 ATCATTACAT
* * *
56457925 TTA TTA TTA TTA TTG TTA TTA TTA TTA CTA TTA TTA CTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
56457971 TTA TTA
1 TTA TTA
56457977 GTTTTATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
3 40 0.95
4 2 0.05
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:56458222 original size:52 final size:52
Alignment explanation
Indices: 56458129--56458234 Score: 126
Period size: 52 Copynumber: 2.0 Consensus size: 52
56458119 CATATCTTTG
* * * *
56458129 ATTCATATATATATACTTATTTTTATATATTATAATTTATATATAT-TCATAT
1 ATTCATATATATATACATATTTTCAAATATTATAATGTATATATATAT-ATAT
* *
56458181 ATTCATATCTATATACATATTTTCAAATTTTTATAA-GTATATATATATATAT
1 ATTCATATATATATACATATTTTCAAA-TATTATAATGTATATATATATATAT
56458233 AT
1 AT
56458235 ATATATTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
52 38 0.83
53 8 0.17
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.53
Consensus pattern (52 bp):
ATTCATATATATATACATATTTTCAAATATTATAATGTATATATATATATAT
Found at i:56458422 original size:4 final size:4
Alignment explanation
Indices: 56458413--56458444 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
56458403 TTTAAATAAT
56458413 TTTA TTTA TTTA TTTA TTTA TTTA TTTCA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT-A TTT
56458445 TCATCATTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:56458905 original size:69 final size:70
Alignment explanation
Indices: 56458768--56458905 Score: 188
Period size: 69 Copynumber: 2.0 Consensus size: 70
56458758 TCTTTTCAAA
* **
56458768 CTCAAATTTTCAACGATCTCGGGAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCATGATTTT
1 CTCAAATTTTAAACGATCTCGGGAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCATGATCCT
56458833 TTTTC
66 TTTTC
* * * * * *
56458838 CTCAAGTTTTAAATGATCTCGGGATTTATAAA-AGATCGTGTCCTAACTTACTGGTCGTGATCCT
1 CTCAAATTTTAAACGATCTCGGGAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCATGATCCT
56458902 TTTT
66 TTTT
56458906 TAAAATCCGA
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
69 32 0.54
70 27 0.46
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (70 bp):
CTCAAATTTTAAACGATCTCGGGAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCATGATCCT
TTTTC
Found at i:56460976 original size:16 final size:16
Alignment explanation
Indices: 56460938--56460976 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
56460928 CAAAACATCT
*
56460938 TAAAAAATAAATGGTA
1 TAAAAAATAAATAGTA
*
56460954 TATAAAATAAATAGTA
1 TAAAAAATAAATAGTA
56460970 TAAAAAA
1 TAAAAAA
56460977 ATTTGCAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.26
Consensus pattern (16 bp):
TAAAAAATAAATAGTA
Found at i:56461601 original size:23 final size:22
Alignment explanation
Indices: 56461573--56461617 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
56461563 AAATTAAATA
56461573 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
56461596 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
56461618 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:56461954 original size:13 final size:13
Alignment explanation
Indices: 56461936--56461962 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
56461926 TTGTAATAAT
56461936 AAATTTGTTTAGC
1 AAATTTGTTTAGC
56461949 AAATTTGTTTAGC
1 AAATTTGTTTAGC
56461962 A
1 A
56461963 TAGATGTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.44
Consensus pattern (13 bp):
AAATTTGTTTAGC
Found at i:56462576 original size:23 final size:24
Alignment explanation
Indices: 56462550--56462598 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
56462540 CACATACTCA
* *
56462550 TTTCCCTA-CATCTTTCCTTCTTT
1 TTTCCCCATCATCTTTACTTCTTT
56462573 TTTCCCCATCATCTTTACTTCTTT
1 TTTCCCCATCATCTTTACTTCTTT
56462597 TT
1 TT
56462599 CCCATTCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.10, C:0.33, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTCCCCATCATCTTTACTTCTTT
Found at i:56468248 original size:92 final size:90
Alignment explanation
Indices: 56468091--56468299 Score: 278
Period size: 92 Copynumber: 2.3 Consensus size: 90
56468081 TTGATTTTAG
* *
56468091 TAAATTCATATAAAAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAAAA-A-TTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
* * *
56468156 ATTTAATATTAATTATTTTAAATTGTA
64 ATGTAATAATAATTATTTTAAATTATA
*
56468183 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATTA
1 TAAATTCATATAA-AAAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATTA
56468247 TATGTAATAATAATTATTTTAAATTATA
63 TATGTAATAATAATTATTTTAAATTATA
*
56468275 CAAATTCATA-AAATATAATTTATTA
1 TAAATTCATATAAA-A-AATTTATTA
56468300 GTTATAATTA
Statistics
Matches: 105, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
90 2 0.02
91 31 0.30
92 69 0.66
93 3 0.03
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (90 bp):
TAAATTCATATAAAAAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTATAT
GTAATAATAATTATTTTAAATTATA
Found at i:56468260 original size:24 final size:25
Alignment explanation
Indices: 56468227--56468274 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
56468217 TTATGAAATT
*
56468227 TAATATTAATTA-TTAAATTATATG
1 TAATAATAATTATTTAAATTATATG
56468251 TAATAATAATTATTTTAAATTATA
1 TAATAATAATTA-TTTAAATTATA
56468275 CAAATTCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.52
26 10 0.48
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
TAATAATAATTATTTAAATTATATG
Found at i:56468428 original size:66 final size:64
Alignment explanation
Indices: 56468353--56468563 Score: 203
Period size: 66 Copynumber: 3.4 Consensus size: 64
56468343 AAATATATTT
56468353 AATATTAATTATTTCAAATTTTCATTTACAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTTT-ATTTACAGTATCATATATTATGATTTGAGTAAATTCATATAA
56468418 G
64 G
* * * * **
56468419 AATATTAATTATTAAGAATTTTA-TTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTTTATTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAG
*
56468473 AATAATAATTATGTT-AATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTAT-TTAAATTT-TA-TTTACAGTATCATATATTATGATTTGAGTAAATTCATATA
56468537 AG
63 AG
*
56468539 AATATTAATTATTAAGAATTTTATT
1 AATATTAATTATTTA-AATTTTATT
56468564 AATATATTTT
Statistics
Matches: 113, Mismatches: 15, Indels: 35
0.69 0.09 0.21
Matches are distributed among these distances:
53 5 0.04
54 13 0.12
55 5 0.04
56 4 0.04
57 3 0.03
58 1 0.01
59 10 0.09
60 8 0.07
61 10 0.09
62 1 0.01
63 3 0.03
64 4 0.04
65 9 0.08
66 32 0.28
67 5 0.04
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (64 bp):
AATATTAATTATTTAAATTTTATTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:56468457 original size:120 final size:119
Alignment explanation
Indices: 56468322--56468603 Score: 459
Period size: 120 Copynumber: 2.4 Consensus size: 119
56468312 TTAAATTATT
* *
56468322 TTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-TTTACAG
1 TTAAAT-ATATATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-ATTTTACAG
56468384 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTA
62 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTA
56468442 TTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTAT
1 TTAAA-TATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTAT
56468507 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTA
65 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTA
56468562 TT--A-ATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 TTAAATATATATTTTAATTATAATATATTTAATAATAATTATGTT
56468604 TAAATATGAT
Statistics
Matches: 156, Mismatches: 2, Indels: 12
0.92 0.01 0.07
Matches are distributed among these distances:
116 39 0.25
118 1 0.01
119 6 0.04
120 107 0.69
121 3 0.02
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (119 bp):
TTAAATATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTA
Found at i:56468475 original size:15 final size:15
Alignment explanation
Indices: 56468440--56468491 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
56468430 TTAAGAATTT
*
56468440 TATTAAATTAT-ATA
1 TATTTAATTATAATA
56468454 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
56468468 TATTTAATAATAAT-
1 TATTTAATTATAATA
56468482 TATGTTAATT
1 TAT-TTAATT
56468492 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:56468569 original size:57 final size:57
Alignment explanation
Indices: 56468388--56468571 Score: 162
Period size: 57 Copynumber: 3.1 Consensus size: 57
56468378 TTACAGTATC
56468388 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
* * * * * * *
56468445 A-AT-TATAT-ATTTTAATTATAATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTACAGT
1 ATATAT-TATGA-TTTGAGTA-AAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTT--A-T
*
56468505 ATC
56 -TA
56468508 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
56468565 ATATATT
1 ATATATT
56468572 TTAATTATAA
Statistics
Matches: 95, Mismatches: 16, Indels: 32
0.66 0.11 0.22
Matches are distributed among these distances:
55 2 0.02
56 11 0.12
57 20 0.21
58 6 0.06
59 8 0.08
60 8 0.08
61 8 0.08
62 6 0.06
63 13 0.14
64 11 0.12
65 2 0.02
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (57 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
Found at i:56468591 original size:15 final size:16
Alignment explanation
Indices: 56468563--56468606 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
56468553 AGAATTTTAT
*
56468563 TAATATATTTTAATTA
1 TAATATATTTTAATAA
56468579 TAATATA-TTTAATAA
1 TAATATATTTTAATAA
56468594 TAAT-TATGTTTAA
1 TAATATAT-TTTAA
56468607 ATATGATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
TAATATATTTTAATAA
Found at i:56468736 original size:18 final size:17
Alignment explanation
Indices: 56468708--56468742 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
56468698 AATTATAAGA
*
56468708 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
56468725 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
56468743 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:56468740 original size:156 final size:153
Alignment explanation
Indices: 56468544--56468855 Score: 484
Period size: 156 Copynumber: 2.0 Consensus size: 153
56468534 ATAAGAATAT
*
56468544 TAATTATTAAGAATTTTATTAATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 TAATTATTAAGAATTTTATTAATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
** * * *
56468609 ATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAAT-ATCAATAA
66 ATGATTAAAAAAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAAT-AATAA
*
56468673 TAATTTACCACAACAAATTTCTGC
130 TAATTTACCAAAACAAATTTCTGC
56468697 TAATTA-TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATT--A--ATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
56468761 AAATATGATTAAAAAAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAATAATAATAA
62 AAATATGATTAAAAAAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAATAA
*
56468826 TAATCATTTACCAAAACAAATTTCTGC
127 TAATAATTTACCAAAACAAATTTCTGC
56468853 TAA
1 TAA
56468856 GGGTATTCTA
Statistics
Matches: 145, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
152 13 0.09
153 6 0.04
154 1 0.01
156 123 0.85
157 2 0.01
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (153 bp):
TAATTATTAAGAATTTTATTAATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
ATGATTAAAAAAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAATAATAAT
AATTTACCAAAACAAATTTCTGC
Found at i:56468999 original size:16 final size:16
Alignment explanation
Indices: 56468978--56469013 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
56468968 GATTTGCTAT
56468978 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
56468994 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
56469010 TACA
1 TACA
56469014 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:56475216 original size:14 final size:14
Alignment explanation
Indices: 56475197--56475225 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
56475187 TTGTCAAAAT
56475197 TATTCCAACCTTGA
1 TATTCCAACCTTGA
56475211 TATTCCAACCTTGA
1 TATTCCAACCTTGA
56475225 T
1 T
56475226 TAGGATGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.38
Consensus pattern (14 bp):
TATTCCAACCTTGA
Found at i:56487521 original size:32 final size:32
Alignment explanation
Indices: 56487480--56487542 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
56487470 AACTGAAGTG
56487480 GTGTTTCTTAACAAGTTGAGCCTGTATGAGTA
1 GTGTTTCTTAACAAGTTGAGCCTGTATGAGTA
**
56487512 GTGTTTCTTAATGAGTTGAGCCTGTATGAGT
1 GTGTTTCTTAACAAGTTGAGCCTGTATGAGT
56487543 GACCCAGCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.22, C:0.11, G:0.27, T:0.40
Consensus pattern (32 bp):
GTGTTTCTTAACAAGTTGAGCCTGTATGAGTA
Found at i:56494612 original size:6 final size:6
Alignment explanation
Indices: 56494603--56494636 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
56494593 TATAAGTCCC
* *
56494603 TTGCTG TTGCTG TCGCTG CTGCTG TTGCTG TTGC
1 TTGCTG TTGCTG TTGCTG TTGCTG TTGCTG TTGC
56494637 AAGTGTGGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.24, G:0.32, T:0.44
Consensus pattern (6 bp):
TTGCTG
Found at i:56495125 original size:14 final size:14
Alignment explanation
Indices: 56495106--56495150 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
56495096 TAGTTTTGGA
56495106 TTTAATTTTTATAT
1 TTTAATTTTTATAT
*
56495120 TTTAATTTAGT-TAT
1 TTTAATTT-TTATAT
56495134 TTTAATTTTTATAT
1 TTTAATTTTTATAT
56495148 TTT
1 TTT
56495151 TAAATTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 25 0.93
15 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTAATTTTTATAT
Found at i:56495861 original size:42 final size:42
Alignment explanation
Indices: 56495802--56495947 Score: 161
Period size: 42 Copynumber: 3.5 Consensus size: 42
56495792 TTGTCCGAGG
** * *
56495802 GGTTGCTAAGTGCTGATTCCCCAAATTATTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGGT
* * *
56495844 GGTTGCTAAGTGCTGATTCCACCGTATCCTTAATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTAT-AAAGGT
* * *
56495887 GGTTGCTATGTGCTGATTCCCCGTATCATTGAATAT-AAGTT
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGGT
*
56495928 GGTTGCTAAGTGTTGATTCC
1 GGTTGCTAAGTGCTGATTCC
56495948 ACCGAGTAAC
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
40 3 0.03
41 18 0.21
42 32 0.37
43 29 0.33
44 5 0.06
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGGT
Found at i:56498005 original size:25 final size:25
Alignment explanation
Indices: 56497975--56498031 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
56497965 TAGAAAGCTC
* *
56497975 TTTAGTTTTAAGGTTTCTTTCATGT
1 TTTAGTTTTAAGGTTCCTTTCATCT
56498000 TTTAGTTTTAAGGTTCCTTTCATCT
1 TTTAGTTTTAAGGTTCCTTTCATCT
56498025 TTTAGTT
1 TTTAGTT
56498032 AGGAGTAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.16, C:0.11, G:0.14, T:0.60
Consensus pattern (25 bp):
TTTAGTTTTAAGGTTCCTTTCATCT
Found at i:56508060 original size:23 final size:23
Alignment explanation
Indices: 56508007--56508064 Score: 91
Period size: 22 Copynumber: 2.6 Consensus size: 23
56507997 CTAAGCTGGT
*
56508007 AAACGGTAAGCTCTATCGAGCTG
1 AAACGGTAAGCTCTATAGAGCTG
*
56508030 -AACGGTAAGCTCTGTAGAGCTG
1 AAACGGTAAGCTCTATAGAGCTG
56508052 AAACGGTAAGCTC
1 AAACGGTAAGCTC
56508065 ATACAAGCTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 20 0.62
23 12 0.38
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.21
Consensus pattern (23 bp):
AAACGGTAAGCTCTATAGAGCTG
Found at i:56508073 original size:23 final size:22
Alignment explanation
Indices: 56508007--56508074 Score: 77
Period size: 22 Copynumber: 3.0 Consensus size: 22
56507997 CTAAGCTGGT
56508007 AAACGGTAAGCTCTATCGAGCTG
1 AAACGGTAAGCTCTA-CGAGCTG
56508030 -AACGGTAAGCTCTGTA-GAGCTG
1 AAACGGTAAGCTC--TACGAGCTG
*
56508052 AAACGGTAAGCTCATACAAGCTG
1 AAACGGTAAGCTC-TACGAGCTG
56508075 TGGTGAGTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
22 20 0.51
23 17 0.44
24 2 0.05
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (22 bp):
AAACGGTAAGCTCTACGAGCTG
Found at i:56511656 original size:22 final size:21
Alignment explanation
Indices: 56511598--56511660 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
56511588 CAAAACAACA
*
56511598 GTTTCTCCCT-TTTTCTTACTG
1 GTTTCTCCCTCTTTT-TTGCTG
* *
56511619 GTTTGTCCCTCATTTTTGCTG
1 GTTTCTCCCTCTTTTTTGCTG
56511640 GTTTCTCCCCTCTTTTTTGCT
1 GTTTCT-CCCTCTTTTTTGCT
56511661 TTGTTCTCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 19 0.54
22 16 0.46
ACGTcount: A:0.03, C:0.29, G:0.13, T:0.56
Consensus pattern (21 bp):
GTTTCTCCCTCTTTTTTGCTG
Found at i:56511668 original size:22 final size:22
Alignment explanation
Indices: 56511616--56511660 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
56511606 CTTTTTCTTA
*
56511616 CTGGTTTGT-CCCTCATTTTTG
1 CTGGTTTCTCCCCTCATTTTTG
*
56511637 CTGGTTTCTCCCCTCTTTTTTG
1 CTGGTTTCTCCCCTCATTTTTG
56511659 CT
1 CT
56511661 TTGTTCTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.02, C:0.29, G:0.16, T:0.53
Consensus pattern (22 bp):
CTGGTTTCTCCCCTCATTTTTG
Found at i:56514797 original size:29 final size:29
Alignment explanation
Indices: 56514715--56515165 Score: 762
Period size: 29 Copynumber: 15.2 Consensus size: 29
56514705 CATTGTATTT
56514715 GTGTATTTTAAAAATAAAGAAATATATGTA
1 GTGTATTTTAAAAATAAA-AAATATATGTA
56514745 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
56514775 GTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
* *
56514804 GTGTATTTTATAAATAAAATATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
56514833 GTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
56514862 GTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
56514891 GTGTATTTTAAAAATAAAAAATATATATATGTA
1 GTGTATTTTAAAAAT--AAAA-A-ATATATGTA
56514924 GTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
56514953 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
56514983 GTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAAT--AAAAAATATATGTA
56515014 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
*
56515044 GTGTATTTTAAAAATAAAAAATATATATA
1 GTGTATTTTAAAAATAAAAAATATATGTA
56515073 GTGTATTTTAAAAAT-AAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
56515101 GTGTATTTTAAAAAT-AAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
56515129 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
56515159 GTGTATT
1 GTGTATT
56515166 CGGTTTATTC
Statistics
Matches: 406, Mismatches: 6, Indels: 18
0.94 0.01 0.04
Matches are distributed among these distances:
28 55 0.14
29 164 0.40
30 121 0.30
31 41 0.10
32 1 0.00
33 24 0.06
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.38
Consensus pattern (29 bp):
GTGTATTTTAAAAATAAAAAATATATGTA
Found at i:56515519 original size:39 final size:39
Alignment explanation
Indices: 56515476--56515552 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
56515466 ACTAAAGTGA
56515476 AAAGAAAAAAATAGTTCAAGTAAAGCTTTAAAGATGAAT
1 AAAGAAAAAAATAGTTCAAGTAAAGCTTTAAAGATGAAT
*
56515515 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAA
1 AAAGAAAAAAATAGTTCAAGTAAAGCTTTAAAGATGAA
56515553 CAAATCGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.56, C:0.06, G:0.16, T:0.22
Consensus pattern (39 bp):
AAAGAAAAAAATAGTTCAAGTAAAGCTTTAAAGATGAAT
Found at i:56519777 original size:21 final size:21
Alignment explanation
Indices: 56519753--56519805 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
56519743 CATTGTTTCT
*
56519753 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
56519774 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
56519795 AATCTCACCGC
1 AATCTCACCGC
56519806 CATTACTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:56520277 original size:15 final size:15
Alignment explanation
Indices: 56520257--56520287 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
56520247 TTTATAAAAC
56520257 CAAAACTTGATCCGA
1 CAAAACTTGATCCGA
56520272 CAAAACTTGATCCGA
1 CAAAACTTGATCCGA
56520287 C
1 C
56520288 TTGTAAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.29, G:0.13, T:0.19
Consensus pattern (15 bp):
CAAAACTTGATCCGA
Found at i:56522349 original size:5 final size:5
Alignment explanation
Indices: 56522339--56522363 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
56522329 TATGATATTA
56522339 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
56522364 TTGAGTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:56524744 original size:75 final size:76
Alignment explanation
Indices: 56524653--56524803 Score: 279
Period size: 75 Copynumber: 2.0 Consensus size: 76
56524643 TAAATGTGAA
56524653 AGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCTAATT-ATT-GT
1 AGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCT-ATTCATTGGT
56524716 GGTTGCTAAGTG
65 GGTTGCTAAGTG
56524728 AGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTG
1 AGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTG
56524793 GTTGCTAAGTG
66 GTTGCTAAGTG
56524804 CTGATTCCCC
Statistics
Matches: 74, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
74 3 0.04
75 57 0.77
76 14 0.19
ACGTcount: A:0.17, C:0.19, G:0.32, T:0.32
Consensus pattern (76 bp):
AGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTG
GTTGCTAAGTG
Found at i:56524801 original size:33 final size:32
Alignment explanation
Indices: 56524732--56524867 Score: 141
Period size: 27 Copynumber: 4.5 Consensus size: 32
56524722 TAAGTGAGGG
56524732 GGTTGCTAAGTGCTGATTCCCC---CGA--GG-
1 GGTTGCTAAGTGCTGATTCCCCATTC-ATTGGT
56524759 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCC-ATTCATTGGT
*
56524792 GGTTGCTAAGTGCTGATTCCCC---CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCATTCATTGGT
**
56524819 GGTTGCTGTGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCC-ATTCATTGGT
56524852 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
56524868 ATCCACCGAT
Statistics
Matches: 90, Mismatches: 6, Indels: 20
0.78 0.05 0.17
Matches are distributed among these distances:
27 42 0.47
28 2 0.02
29 2 0.02
30 1 0.01
31 3 0.03
32 4 0.04
33 36 0.40
ACGTcount: A:0.15, C:0.22, G:0.30, T:0.33
Consensus pattern (32 bp):
GGTTGCTAAGTGCTGATTCCCCATTCATTGGT
Found at i:56524825 original size:60 final size:60
Alignment explanation
Indices: 56524732--56524867 Score: 236
Period size: 60 Copynumber: 2.3 Consensus size: 60
56524722 TAAGTGAGGG
* *
56524732 GGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
**
56524792 GGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
56524852 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
56524868 ATCCACCGAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 72 1.00
ACGTcount: A:0.15, C:0.22, G:0.30, T:0.33
Consensus pattern (60 bp):
GGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
Found at i:56526877 original size:15 final size:15
Alignment explanation
Indices: 56526859--56526888 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
56526849 ACAAACAAGT
56526859 GGGCCGAATGGTGGA
1 GGGCCGAATGGTGGA
*
56526874 GGGCCTAATGGTGGA
1 GGGCCGAATGGTGGA
56526889 ATTACTAGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.13, G:0.50, T:0.17
Consensus pattern (15 bp):
GGGCCGAATGGTGGA
Found at i:56526943 original size:18 final size:18
Alignment explanation
Indices: 56526901--56526935 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
56526891 TACTAGCAAG
56526901 TTTGGGCCAATTGATGGC
1 TTTGGGCCAATTGATGGC
56526919 TTTGGGCCGAA-TGATGG
1 TTTGGGCC-AATTGATGG
56526936 TGTTGGGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.17, C:0.14, G:0.37, T:0.31
Consensus pattern (18 bp):
TTTGGGCCAATTGATGGC
Found at i:56527740 original size:15 final size:15
Alignment explanation
Indices: 56527720--56527750 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
56527710 ATTCAAATTA
56527720 AATAAAATTGCTATG
1 AATAAAATTGCTATG
*
56527735 AATAAAGTTGCTATG
1 AATAAAATTGCTATG
56527750 A
1 A
56527751 GTGATGTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.32
Consensus pattern (15 bp):
AATAAAATTGCTATG
Found at i:56531438 original size:19 final size:19
Alignment explanation
Indices: 56531414--56531452 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
56531404 ATAAATAAAA
* * *
56531414 AATAAATATGTAATTATAT
1 AATAAAAATATAACTATAT
56531433 AATAAAAATATAACTATAT
1 AATAAAAATATAACTATAT
56531452 A
1 A
56531453 TATTATTATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (19 bp):
AATAAAAATATAACTATAT
Found at i:56536877 original size:369 final size:368
Alignment explanation
Indices: 56536177--56536912 Score: 1310
Period size: 369 Copynumber: 2.0 Consensus size: 368
56536167 CGTATGAATG
*
56536177 CAATCAAGTAGTAAAAACTCACCATCCAGCTAAAACACCTCTCTGTCCCCCAATCACACCCCAAA
1 CAATCAAGTAGTAAAAACTCACCATCCAGCTAAAACACCTCTCCGTCCCCCAATCACACCCCAAA
*
56536242 AGAGCTGTTTAAGGTCATCCAACCAAACACACCATATAGGACCTCGAAAGACCCATCCAACCTTA
66 AGAGCTGTTTAAGATCATCCAACCAAACACACCATATAGGACCTCGAAAGACCCATCCAACCTTA
56536307 CACACCATATATGTGGACTAAGCCACTCAGATAATAATATGTAGCAAAGCTGGCGTATATACAGT
131 CACACCATATATGTGGACTAAGCCACTCAGATAATAATATGTAGCAAAGCTGGCGTATATACAGT
* *
56536372 ACAGTGCATTGTGGTAAACCGTTGTATAGATATGTTACGGTTTAAATTGCCAGATCAGATAACAA
196 ACAGTGCATTGTGGTAAACCGTTGTACAGATATGTTACGATTTAAATTGCCAGATCAGATAACAA
* *
56536437 TATGCAGCAAAGTTGATGTATATGCGGTATAGTGCGGTAAACCGTTGTACAGATAGGTTGCAGTT
261 TATGCAGCAAAGTTGATGTATATGCGGTACAGTGCAGTAAACCGTTGTACAGATAGGTTGCAGTT
56536502 TAACTGCCAGATCAGAACAGTCTTCCTTCTCTTCACAACCAAC
326 TAACTGCCAGATCAGAACAGTCTTCCTTCTCTTCACAACCAAC
* * * *
56536545 CAATCAAGTAGTAAAAACTCACCCATCCAGCTAAAATACCTCTCCGTCTCCCGATCAGACCCCAA
1 CAATCAAGTAGTAAAAACTCA-CCATCCAGCTAAAACACCTCTCCGTCCCCCAATCACACCCCAA
*
56536610 AAGAGCTGTTTAAGATCATCCAACCAAACACACCATATAGGACCTCGAAAGGCCCATCCAACCTT
65 AAGAGCTGTTTAAGATCATCCAACCAAACACACCATATAGGACCTCGAAAGACCCATCCAACCTT
56536675 ACACACCATATATGTGGACTAAGCCACTCAGATAATAATATGTAGCAAAGCTGGCGTATATACAG
130 ACACACCATATATGTGGACTAAGCCACTCAGATAATAATATGTAGCAAAGCTGGCGTATATACAG
* * *
56536740 TACAGTGCATTGTGGTAAACCGTTGTACAGATATGTTGCGATTTAAGTTGCCAGATCAGATAATA
195 TACAGTGCATTGTGGTAAACCGTTGTACAGATATGTTACGATTTAAATTGCCAGATCAGATAACA
* * *
56536805 ATATGCAGCAAAGTTGATGTATATGCGGTACAGTGTAGTAAATCGTTGTACAGATAGGTTGGAGT
260 ATATGCAGCAAAGTTGATGTATATGCGGTACAGTGCAGTAAACCGTTGTACAGATAGGTTGCAGT
56536870 TTAACTGCCAGATCAGAACAGTCTTCCTTCTCTTCACAACCAA
325 TTAACTGCCAGATCAGAACAGTCTTCCTTCTCTTCACAACCAA
56536913 ACCCCAAAAG
Statistics
Matches: 350, Mismatches: 17, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
368 21 0.06
369 329 0.94
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (368 bp):
CAATCAAGTAGTAAAAACTCACCATCCAGCTAAAACACCTCTCCGTCCCCCAATCACACCCCAAA
AGAGCTGTTTAAGATCATCCAACCAAACACACCATATAGGACCTCGAAAGACCCATCCAACCTTA
CACACCATATATGTGGACTAAGCCACTCAGATAATAATATGTAGCAAAGCTGGCGTATATACAGT
ACAGTGCATTGTGGTAAACCGTTGTACAGATATGTTACGATTTAAATTGCCAGATCAGATAACAA
TATGCAGCAAAGTTGATGTATATGCGGTACAGTGCAGTAAACCGTTGTACAGATAGGTTGCAGTT
TAACTGCCAGATCAGAACAGTCTTCCTTCTCTTCACAACCAAC
Found at i:56538367 original size:6 final size:6
Alignment explanation
Indices: 56538356--56538404 Score: 55
Period size: 6 Copynumber: 7.7 Consensus size: 6
56538346 TTTCCTTATC
56538356 AAAAAT AAAAAT AAAAAT AAGAAA- AACAAAT AAAAAAT AAAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AA-AAAT AA-AAAT -AAAAAT -AAAAAT AAAA
56538405 TCTAACTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
6 23 0.59
7 14 0.36
8 2 0.05
ACGTcount: A:0.84, C:0.02, G:0.02, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:56538372 original size:7 final size:7
Alignment explanation
Indices: 56538356--56538404 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
56538346 TTTCCTTATC
56538356 AAAAAT-
1 AAAAATA
56538362 AAAAAT-
1 AAAAATA
56538368 AAAAATA
1 AAAAATA
*
56538375 AGAAA-A
1 AAAAATA
*
56538381 ACAAATA
1 AAAAATA
56538388 AAAAATA
1 AAAAATA
56538395 AAAAATA
1 AAAAATA
56538402 AAA
1 AAA
56538405 TCTAACTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
6 17 0.45
7 21 0.55
ACGTcount: A:0.84, C:0.02, G:0.02, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:56538712 original size:18 final size:20
Alignment explanation
Indices: 56538674--56538716 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
56538664 CATTAGGATA
*
56538674 ACATAACAAAACACTTATAT
1 ACATAAAAAAACACTTATAT
56538694 ACATAAAAAAACACTTATAT
1 ACATAAAAAAACACTTATAT
56538714 ACA
1 ACA
56538717 CCAAAATAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.58, C:0.19, G:0.00, T:0.23
Consensus pattern (20 bp):
ACATAAAAAAACACTTATAT
Found at i:56538722 original size:20 final size:20
Alignment explanation
Indices: 56538681--56538722 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
56538671 ATAACATAAC
*
56538681 AAAACACTTATATACATAAA
1 AAAACACTTATATACACAAA
56538701 AAAACACTTATATACACCAAA
1 AAAACACTTATATACA-CAAA
56538722 A
1 A
56538723 TAACTTCAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.60, C:0.19, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAACACTTATATACACAAA
Found at i:56545247 original size:22 final size:22
Alignment explanation
Indices: 56545219--56545265 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
56545209 TTTAATGATC
56545219 AAATTAAATG-CGAAAATAAAAA
1 AAATTAAA-GACGAAAATAAAAA
* *
56545241 AAATTAAAGACTAAGATAAAAA
1 AAATTAAAGACGAAAATAAAAA
56545263 AAA
1 AAA
56545266 ATCAAATTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.70, C:0.04, G:0.09, T:0.17
Consensus pattern (22 bp):
AAATTAAAGACGAAAATAAAAA
Found at i:56549643 original size:16 final size:16
Alignment explanation
Indices: 56549622--56549652 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
56549612 ATTCGTTGAG
56549622 ATTATCTTCATATTGC
1 ATTATCTTCATATTGC
56549638 ATTATCTTCATATTG
1 ATTATCTTCATATTG
56549653 TACTCTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.16, G:0.06, T:0.52
Consensus pattern (16 bp):
ATTATCTTCATATTGC
Found at i:56551732 original size:13 final size:13
Alignment explanation
Indices: 56551714--56551738 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56551704 TCATATAGGC
56551714 ACATTAAACATAT
1 ACATTAAACATAT
56551727 ACATTAAACATA
1 ACATTAAACATA
56551739 CCTAAACATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (13 bp):
ACATTAAACATAT
Found at i:56552283 original size:2 final size:2
Alignment explanation
Indices: 56552276--56552304 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
56552266 CAAAGCTCAG
56552276 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
56552305 GATTTAATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:56556949 original size:42 final size:42
Alignment explanation
Indices: 56556795--56556948 Score: 209
Period size: 42 Copynumber: 3.7 Consensus size: 42
56556785 TTAACTTATA
* *
56556795 TGAGTTTCTGTTTAACCCTAATGGGTTTCCGTTCAGCTTTTT
1 TGAGCTTCAGTTTAACCCTAATGGGTTTCCGTTCAGCTTTTT
56556837 TGAGCTTCAGTTTAACCCTAATGGGTTTCCGTTCAGCTTTTT
1 TGAGCTTCAGTTTAACCCTAATGGGTTTCCGTTCAGCTTTTT
* * * * *
56556879 TGAGCTTCAATTTAACCCTTATGGGTTTTCGTTCAGCTCTTA
1 TGAGCTTCAGTTTAACCCTAATGGGTTTCCGTTCAGCTTTTT
* * * *
56556921 CGAGCTTCTGTTCAACCCTTATGGGTTT
1 TGAGCTTCAGTTTAACCCTAATGGGTTT
56556949 TTGTTTAACA
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 101 1.00
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (42 bp):
TGAGCTTCAGTTTAACCCTAATGGGTTTCCGTTCAGCTTTTT
Found at i:56556953 original size:21 final size:21
Alignment explanation
Indices: 56556892--56556964 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
56556882 GCTTCAATTT
*
56556892 AACCCTTATGGGTTTTCGTTC
1 AACCCTTATGGGTTTTTGTTC
* * * * * *
56556913 AGCTCTTACGAGCTTCTGTTC
1 AACCCTTATGGGTTTTTGTTC
*
56556934 AACCCTTATGGGTTTTTGTTT
1 AACCCTTATGGGTTTTTGTTC
*
56556955 AACACTTATG
1 AACCCTTATG
56556965 TGCTTCTGTG
Statistics
Matches: 37, Mismatches: 15, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (21 bp):
AACCCTTATGGGTTTTTGTTC
Found at i:56556970 original size:42 final size:42
Alignment explanation
Indices: 56556800--56556973 Score: 114
Period size: 42 Copynumber: 4.1 Consensus size: 42
56556790 TTATATGAGT
* * * * ** **
56556800 TTCTGTTTAACCCTAATGGGTTTCCGTTCAGCTTTTTTGAGC
1 TTCTGTTCAACCCTTATGGGTTTTCGTTCAACACTTACGAGC
* * * * * ** **
56556842 TTCAGTTTAACCCTAATGGGTTTCCGTTCAGCTTTTTTGAGC
1 TTCTGTTCAACCCTTATGGGTTTTCGTTCAACACTTACGAGC
** * * *
56556884 TTCAATTTAACCCTTATGGGTTTTCGTTCAGCTCTTACGAGC
1 TTCTGTTCAACCCTTATGGGTTTTCGTTCAACACTTACGAGC
* * * *
56556926 TTCTGTTCAACCCTTATGGGTTTTTGTTTAACACTTATGTGC
1 TTCTGTTCAACCCTTATGGGTTTTCGTTCAACACTTACGAGC
56556968 TTCTGT
1 TTCTGT
56556974 GCAGCTTTCG
Statistics
Matches: 116, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 116 1.00
ACGTcount: A:0.16, C:0.21, G:0.18, T:0.45
Consensus pattern (42 bp):
TTCTGTTCAACCCTTATGGGTTTTCGTTCAACACTTACGAGC
Found at i:56556970 original size:84 final size:84
Alignment explanation
Indices: 56556805--56556970 Score: 188
Period size: 84 Copynumber: 2.0 Consensus size: 84
56556795 TGAGTTTCTG
* ** *
56556805 TTTAACCCTAATGGGTTTCCGTTCAGCTTTTTTGAGCTTCAGTTTAACCCTAATGGGTTTCCGTT
1 TTTAACCCTAATGGGTTTCCGTTCAGCTCTTACGAGCTTCAGTTCAACCCTAATGGGTTTCCGTT
* ** *
56556870 CAGCTTTTTTGAGCTTCAA
66 CAACACTTATGAGCTTCAA
* * * * **
56556889 TTTAACCCTTATGGGTTTTCGTTCAGCTCTTACGAGCTTCTGTTCAACCCTTATGGGTTTTTGTT
1 TTTAACCCTAATGGGTTTCCGTTCAGCTCTTACGAGCTTCAGTTCAACCCTAATGGGTTTCCGTT
* *
56556954 TAACACTTATGTGCTTC
66 CAACACTTATGAGCTTC
56556971 TGTGCAGCTT
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
84 66 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (84 bp):
TTTAACCCTAATGGGTTTCCGTTCAGCTCTTACGAGCTTCAGTTCAACCCTAATGGGTTTCCGTT
CAACACTTATGAGCTTCAA
Found at i:56560886 original size:41 final size:44
Alignment explanation
Indices: 56560822--56560954 Score: 159
Period size: 45 Copynumber: 3.0 Consensus size: 44
56560812 ATGCTATCTC
*
56560822 ATATCGATGCCACTGTCCCAGACAGGGTCTTACACGAATCA-A-
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAATCACAT
* *
56560864 ATA-CGATGCCAATGTCCTAGACATGGTCTTACACGTAATCACAT
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTACACG-AATCACAT
*
56560908 ATATCGATGCC-ATCGTCCCAGAC-GTGGTCTTACACGAGAACACAT
1 ATATCGATGCCAAT-GTCCCAGACAG-GGTCTTACACGA-ATCACAT
56560953 AT
1 AT
56560955 CGAAAATCCT
Statistics
Matches: 78, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
41 29 0.37
42 8 0.10
43 1 0.01
44 6 0.08
45 34 0.44
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (44 bp):
ATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAATCACAT
Found at i:56560952 original size:45 final size:43
Alignment explanation
Indices: 56560785--56560957 Score: 171
Period size: 43 Copynumber: 4.0 Consensus size: 43
56560775 ATATCGACCA
* * * *
56560785 ATGCCAACGTCCCAGACGTGGTCTTACATGCTATCTC-ATATCG
1 ATGCCATCGTCCCAGACGTGGTCTTACACG-AATCACAATATCG
56560828 ATGCCA-CTGTCCCAGACAG-GGTCTTACACGAATCA-AATA-CG
1 ATGCCATC-GTCCCAGAC-GTGGTCTTACACGAATCACAATATCG
* *
56560869 ATGCCAAT-GTCCTAGACATGGTCTTACACGTAATCACATATATCG
1 ATGCC-ATCGTCCCAGACGTGGTCTTACACG-AATCACA-ATATCG
*
56560914 ATGCCATCGTCCCAGACGTGGTCTTACACGAGAACAC-ATATCG
1 ATGCCATCGTCCCAGACGTGGTCTTACACGA-ATCACAATATCG
56560957 A
1 A
56560958 AAATCCTATG
Statistics
Matches: 110, Mismatches: 8, Indels: 24
0.77 0.06 0.17
Matches are distributed among these distances:
41 26 0.24
42 13 0.12
43 33 0.30
44 7 0.06
45 31 0.28
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCATCGTCCCAGACGTGGTCTTACACGAATCACAATATCG
Found at i:56563204 original size:41 final size:41
Alignment explanation
Indices: 56563147--56563228 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
56563137 GCAGTAGGAA
56563147 TTTTAACTTCATGGTGTTAAGAATGAGCTGTTTGTAGTTGC
1 TTTTAACTTCATGGTGTTAAGAATGAGCTGTTTGTAGTTGC
56563188 TTTTAACTTCATGGTGTTAAGAATGAGCTGTTTGTAGTTGC
1 TTTTAACTTCATGGTGTTAAGAATGAGCTGTTTGTAGTTGC
56563229 GTTTGAGACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.22, C:0.10, G:0.24, T:0.44
Consensus pattern (41 bp):
TTTTAACTTCATGGTGTTAAGAATGAGCTGTTTGTAGTTGC
Found at i:56570222 original size:46 final size:46
Alignment explanation
Indices: 56570148--56570286 Score: 217
Period size: 46 Copynumber: 3.0 Consensus size: 46
56570138 CATGGCAAAG
*
56570148 TGTGGAACGTAGGTATGGTAATTT-AGTAAAGAAAACCATACTGAGT
1 TGTGAAACGTAGGTATGGT-ATTTCAGTAAAGAAAACCATACTGAGT
* *
56570194 TGTGAAACGTAGGTATGGTATTTCAGTAACGAAAACCATATTGAGT
1 TGTGAAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
* *
56570240 TGTGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
56570286 T
1 T
56570287 ATAGCATTGT
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
45 4 0.05
46 81 0.95
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.29
Consensus pattern (46 bp):
TGTGAAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
Done.