Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 28 of 208
Found at i:8069098 original size:15 final size:15
Alignment explanation
Indices: 8069078--8069163 Score: 63
Period size: 15 Copynumber: 5.9 Consensus size: 15
8069068 TATATTTTAA
8069078 GGTTTAGGGATTATG
1 GGTTTAGGGATTATG
8069093 GGTTTAGGGATTAT-
1 GGTTTAGGGATTATG
* *
8069107 GGATTAGGG-GT-TG
1 GGTTTAGGGATTATG
* *
8069120 GGATTTAAGGTTTA-G
1 GG-TTTAGGGATTATG
* * *
8069135 GGGTTAGAGGGTTAGG
1 GGTTTAG-GGATTATG
8069151 GGTTTAGGGATTA
1 GGTTTAGGGATTA
8069164 AAAGTTAGGG
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
12 1 0.02
13 3 0.05
14 16 0.29
15 28 0.51
16 7 0.13
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:8069098 original size:22 final size:22
Alignment explanation
Indices: 8069073--8069118 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
8069063 GAGTTTATAT
* *
8069073 TTTAAGGTTTAGGGATTATGGG
1 TTTAAGGATTAGGGATTAGGGG
* *
8069095 TTTAGGGATTATGGATTAGGGG
1 TTTAAGGATTAGGGATTAGGGG
8069117 TT
1 TT
8069119 GGGATTTAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.41
Consensus pattern (22 bp):
TTTAAGGATTAGGGATTAGGGG
Found at i:8069415 original size:21 final size:20
Alignment explanation
Indices: 8069381--8069421 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
8069371 TTATGAATTA
*
8069381 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
*
8069401 GGGATTTAAGGTTTAGGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
8069422 AGGGGTTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:8070322 original size:106 final size:106
Alignment explanation
Indices: 8070201--8070496 Score: 504
Period size: 106 Copynumber: 2.8 Consensus size: 106
8070191 AATTTTGCGG
*
8070201 CGCCGCAAAAAATAAATCAATATATAAAAAATAAAATAAAAAATTTTTAGCATAGCAAAACGGTG
1 CGCCGCAAAAAATAAATCAATTTATAAAAAATAAAATAAAAAATTTTTAGCATAGCAAAACGGTG
8070266 TCATTTTGTTCAAAATGAAATAGCGGCGTTTTTTATAAAAA
66 TCATTTTGTTCAAAATGAAATAGCGGCGTTTTTTATAAAAA
** *
8070307 CGCCGCAAAAAATAAATCAATTTATAAAAAATAAAATAAAATTTTTTTAGCATAACAAAACGGTG
1 CGCCGCAAAAAATAAATCAATTTATAAAAAATAAAATAAAAAATTTTTAGCATAGCAAAACGGTG
8070372 TCATTTTGTTCAAAATGAAATAGCGGCGTTTTTTATAAAAA
66 TCATTTTGTTCAAAATGAAATAGCGGCGTTTTTTATAAAAA
* ** *
8070413 CGCCGC-AAAAATAAATCAATTTATAAAAAACAAAATAAAAAATTTTTAAAATAGCAAAACGGCG
1 CGCCGCAAAAAATAAATCAATTTATAAAAAATAAAATAAAAAATTTTTAGCATAGCAAAACGGTG
*
8070477 TCGTTTTGTTCAAAATGAAA
66 TCATTTTGTTCAAAATGAAA
8070497 AAAATTTTGC
Statistics
Matches: 178, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
105 70 0.39
106 108 0.61
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.28
Consensus pattern (106 bp):
CGCCGCAAAAAATAAATCAATTTATAAAAAATAAAATAAAAAATTTTTAGCATAGCAAAACGGTG
TCATTTTGTTCAAAATGAAATAGCGGCGTTTTTTATAAAAA
Found at i:8070679 original size:92 final size:92
Alignment explanation
Indices: 8070573--8070742 Score: 277
Period size: 92 Copynumber: 1.8 Consensus size: 92
8070563 AACGCCACAA
* * * *
8070573 AAAAATAAATCAATTTATAAAAAATAAAGTAAAAAATTTTTAGCATAACAAAACGGTGTCATTTT
1 AAAAATAAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGAATAACAAAACGGCGTCATTTT
8070638 GTTCAAAATGAAATAGAAAAACGCCGC
66 GTTCAAAATGAAATAGAAAAACGCCGC
* **
8070665 AAAAATAAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGAATAGCAAAACGGCGTGTTTTT
1 AAAAATAAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGAATAACAAAACGGCGTCATTTT
8070730 GTTCAAAATGAAA
66 GTTCAAAATGAAA
8070743 AAAATTTTGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 71 1.00
ACGTcount: A:0.53, C:0.09, G:0.11, T:0.27
Consensus pattern (92 bp):
AAAAATAAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGAATAACAAAACGGCGTCATTTT
GTTCAAAATGAAATAGAAAAACGCCGC
Found at i:8070850 original size:26 final size:26
Alignment explanation
Indices: 8070815--8070889 Score: 150
Period size: 26 Copynumber: 2.9 Consensus size: 26
8070805 AAAACGCTGC
8070815 AAAAATAAATCAATTTATAAAAAGAA
1 AAAAATAAATCAATTTATAAAAAGAA
8070841 AAAAATAAATCAATTTATAAAAAGAA
1 AAAAATAAATCAATTTATAAAAAGAA
8070867 AAAAATAAATCAATTTATAAAAA
1 AAAAATAAATCAATTTATAAAAA
8070890 AGCAATAATG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.69, C:0.04, G:0.03, T:0.24
Consensus pattern (26 bp):
AAAAATAAATCAATTTATAAAAAGAA
Found at i:8073761 original size:23 final size:23
Alignment explanation
Indices: 8073731--8074169 Score: 228
Period size: 23 Copynumber: 19.3 Consensus size: 23
8073721 AAAATTTGAT
8073731 AGTGCTGCAAATTGAAGTGTTTA
1 AGTGCTGCAAATTGAAGTGTTTA
*
8073754 AGTGCTGCAAATTGAAGTATTT-
1 AGTGCTGCAAATTGAAGTGTTTA
* *
8073776 AGTTGCTGGAAATTG-AGATGTTTT
1 AG-TGCTGCAAATTGAAG-TGTTTA
* * * *
8073800 ATTGCTG-TAATTGAGGTGTATA
1 AGTGCTGCAAATTGAAGTGTTTA
* * **
8073822 AATGTTGTTAATTGATA-TGTTTA
1 AGTGCTGCAAATTGA-AGTGTTTA
* *
8073845 AGTCCTGCAAATTTAAGTGTTTA
1 AGTGCTGCAAATTGAAGTGTTTA
* * *
8073868 AATGTTGTAAATTGAAGTGTTTA
1 AGTGCTGCAAATTGAAGTGTTTA
8073891 AGTGCTGCAAATTGAAGTGTTT-
1 AGTGCTGCAAATTGAAGTGTTTA
* *
8073913 AGTTGCTGGAAATTG-AGATGTTTT
1 AG-TGCTGCAAATTGAAG-TGTTTA
* * * *
8073937 A-TCGCTG-TATTTGAGGTGTATA
1 AGT-GCTGCAAATTGAAGTGTTTA
* * **
8073959 AATGTTGTTAATTGATA-TG-TTA
1 AGTGCTGCAAATTGA-AGTGTTTA
*
8073981 AGTGCTGCAAATTTAAGTGTTTA
1 AGTGCTGCAAATTGAAGTGTTTA
* * *
8074004 AATGTTGTAAATTGAAGTGTTTA
1 AGTGCTGCAAATTGAAGTGTTTA
* *
8074027 AGTGCTGCATATTGAAGTATTT-
1 AGTGCTGCAAATTGAAGTGTTTA
* *
8074049 AGTTGCTGGAAATTG-AGATGTTTT
1 AG-TGCTGCAAATTGAAG-TGTTTA
* * * * *
8074073 A-TCGTTG-TAATTTAGGTGTATA
1 AGT-GCTGCAAATTGAAGTGTTTA
* * **
8074095 AATGTTGTTAATTGATA-TGTTTA
1 AGTGCTGCAAATTGA-AGTGTTTA
*
8074118 AGTGCTGCAAATTG-AGATGTTTT
1 AGTGCTGCAAATTGAAG-TGTTTA
* *
8074141 A-TCGCTGTAAATTGAAGTGTTAA
1 AGT-GCTGCAAATTGAAGTGTTTA
8074164 AGTGCT
1 AGTGCT
8074170 ACTTTCCATT
Statistics
Matches: 316, Mismatches: 70, Indels: 60
0.71 0.16 0.13
Matches are distributed among these distances:
21 2 0.01
22 69 0.22
23 239 0.76
24 6 0.02
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.42
Consensus pattern (23 bp):
AGTGCTGCAAATTGAAGTGTTTA
Found at i:8073806 original size:46 final size:45
Alignment explanation
Indices: 8073733--8074169 Score: 314
Period size: 46 Copynumber: 9.6 Consensus size: 45
8073723 AATTTGATAG
* * **
8073733 TGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATTTAGT
1 TGCTGTAAATTGAA-TGTTTAAGTGCTGCAAATTGAAGTGTTTAAA
* * * * * *
8073779 TGCTGGAAATTGAGATGTTTTATTGCTG-TAATTGAGGTGTATAAA
1 TGCTGTAAATTGA-ATGTTTAAGTGCTGCAAATTGAAGTGTTTAAA
* * * *
8073824 TGTTGTTAATTGATATGTTTAAGTCCTGCAAATTTAAGTGTTTAAA
1 TGCTGTAAATTGA-ATGTTTAAGTGCTGCAAATTGAAGTGTTTAAA
* **
8073870 TGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAGT
1 TGCTGTAAATTGAA-TGTTTAAGTGCTGCAAATTGAAGTGTTTAAA
* * * * * *
8073916 TGCTGGAAATTGAGATGTTTTA-TCGCTG-TATTTGAGGTGTATAAA
1 TGCTGTAAATTGA-ATGTTTAAGT-GCTGCAAATTGAAGTGTTTAAA
* * *
8073961 TGTTGTTAATTGATATG-TTAAGTGCTGCAAATTTAAGTGTTTAAA
1 TGCTGTAAATTGA-ATGTTTAAGTGCTGCAAATTGAAGTGTTTAAA
* * * **
8074006 TGTTGTAAATTGAAGTGTTTAAGTGCTGCATATTGAAGTATTTAGT
1 TGCTGTAAATTGAA-TGTTTAAGTGCTGCAAATTGAAGTGTTTAAA
* * * * * * *
8074052 TGCTGGAAATTGAGATGTTTTA-TCGTTG-TAATTTAGGTGTATAAA
1 TGCTGTAAATTGA-ATGTTTAAGT-GCTGCAAATTGAAGTGTTTAAA
* * *
8074097 TGTTGTTAATTGATATGTTTAAGTGCTGCAAATTG-AGATGTTT-TA
1 TGCTGTAAATTGA-ATGTTTAAGTGCTGCAAATTGAAG-TGTTTAAA
*
8074142 TCGCTGTAAATTGAAGTGTTAAAGTGCT
1 T-GCTGTAAATTGAA-TGTTTAAGTGCT
8074170 ACTTTCCATT
Statistics
Matches: 299, Mismatches: 76, Indels: 32
0.73 0.19 0.08
Matches are distributed among these distances:
44 8 0.03
45 119 0.40
46 169 0.57
47 3 0.01
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.42
Consensus pattern (45 bp):
TGCTGTAAATTGAATGTTTAAGTGCTGCAAATTGAAGTGTTTAAA
Found at i:8075132 original size:43 final size:43
Alignment explanation
Indices: 8075084--8075313 Score: 304
Period size: 43 Copynumber: 5.3 Consensus size: 43
8075074 ATTTTTGGAG
* * * *
8075084 AAAGCGTCGCTAAAGGTCTTGTTTTTTAGCGGCGTTTCAGGGA
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTCTGGGA
*
8075127 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGA
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTCTGGGA
* * *
8075170 AAAGCGCTGCTAAAGGTCATT-GTCTTTAGCAGCGTTTTTGGGA
1 AAAGCGCCGCTAAAGGTC-TTGGTCTTTAGCGGCGTTTCTGGGA
* *
8075213 AAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGA
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTCTGGGA
*
8075256 AAAGCGTCGCTAAAGGT-TCTGGTCTTTAGCGGCG-TTCGTGGGA
1 AAAGCGCCGCTAAAGGTCT-TGGTCTTTAGCGGCGTTTC-TGGGA
*
8075299 AGAGCGCCGCTAAAG
1 AAAGCGCCGCTAAAG
8075314 TTAGCGACAC
Statistics
Matches: 166, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
42 3 0.02
43 161 0.97
44 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.28
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTCTGGGA
Found at i:8075213 original size:86 final size:85
Alignment explanation
Indices: 8075084--8075313 Score: 338
Period size: 86 Copynumber: 2.7 Consensus size: 85
8075074 ATTTTTGGAG
* * *
8075084 AAAGCGTCGCTAAAGGTCTTGTTTTTTAGCGGCGTTTCAGGGAAAAGCGCCGCTAAAGGTCTTGG
1 AAAGCGTCGCTAAAGGTCTTG-TCTTTAGCGGCGTTTCTGGGAAAAGCGCCGCTAAAGGTCCTGG
8075149 TCTTTAGCGGCGTTTGTGGGA
65 TCTTTAGCGGCGTTTGTGGGA
* *
8075170 AAAGCG-CTGCTAAAGGTCATTGTCTTTAGCAGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCCTG
1 AAAGCGTC-GCTAAAGGTC-TTGTCTTTAGCGGCGTTTCTGGGAAAAGCGCCGCTAAAGGTCCTG
8075234 GTCTTTAGCGGCGTTTGTGGGA
64 GTCTTTAGCGGCGTTTGTGGGA
* *
8075256 AAAGCGTCGCTAAAGGTTCTGGTCTTTAGCGGCG-TTCGTGGGAAGAGCGCCGCTAAAG
1 AAAGCGTCGCTAAAGG-TCTTGTCTTTAGCGGCGTTTC-TGGGAAAAGCGCCGCTAAAG
8075314 TTAGCGACAC
Statistics
Matches: 130, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
85 3 0.02
86 121 0.93
87 6 0.05
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.28
Consensus pattern (85 bp):
AAAGCGTCGCTAAAGGTCTTGTCTTTAGCGGCGTTTCTGGGAAAAGCGCCGCTAAAGGTCCTGGT
CTTTAGCGGCGTTTGTGGGA
Found at i:8075297 original size:129 final size:129
Alignment explanation
Indices: 8075075--8075313 Score: 356
Period size: 129 Copynumber: 1.9 Consensus size: 129
8075065 TTTAGTGGCA
* * * *
8075075 TTTTTGGAGAAAGCGTCGCTAAAGGTCTTGTTTTTTAGCGGCGTTTCAGGGAAAAGCGCCGCTAA
1 TTTTTGGAGAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTCAGGGAAAAGCGCCGCTAA
* *
8075140 AGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATTGTCTTTAGCAGCG
66 AGGTCTTGGTCTTTAGCGGCGTTCGTGGGAAAAGCGCCGCTAAAGGTCATTGTCTTTAGCAGCG
** *
8075204 TTTTTGG-GAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTA
1 TTTTTGGAG-AAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTCAGGGAAAAGCGCCGCTA
*
8075268 AAGGT-TCTGGTCTTTAGCGGCGTTCGTGGGAAGAGCGCCGCTAAAG
65 AAGGTCT-TGGTCTTTAGCGGCGTTCGTGGGAAAAGCGCCGCTAAAG
8075314 TTAGCGACAC
Statistics
Matches: 98, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
128 2 0.02
129 96 0.98
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.29
Consensus pattern (129 bp):
TTTTTGGAGAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTCAGGGAAAAGCGCCGCTAA
AGGTCTTGGTCTTTAGCGGCGTTCGTGGGAAAAGCGCCGCTAAAGGTCATTGTCTTTAGCAGCG
Found at i:8075412 original size:22 final size:22
Alignment explanation
Indices: 8075384--8075427 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8075374 TTAGCAGCGC
*
8075384 TAAAAAGCGCCGCCAAAGGCCT
1 TAAAAAGCGCCGCCAAAAGCCT
*
8075406 TAAAAAGCGCCGCTAAAAGCCT
1 TAAAAAGCGCCGCCAAAAGCCT
8075428 ATTTTGGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.30, G:0.20, T:0.11
Consensus pattern (22 bp):
TAAAAAGCGCCGCCAAAAGCCT
Found at i:8084906 original size:11 final size:12
Alignment explanation
Indices: 8084881--8084916 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 12
8084871 TTTCTTAATA
8084881 TTATTTAATTTT
1 TTATTTAATTTT
8084893 TTATTTAATTTT
1 TTATTTAATTTT
8084905 TATAATTTAATT
1 T-T-ATTTAATT
8084917 AATATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 13 0.59
13 1 0.05
14 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTATTTAATTTT
Found at i:8085777 original size:59 final size:59
Alignment explanation
Indices: 8085712--8085832 Score: 215
Period size: 59 Copynumber: 2.1 Consensus size: 59
8085702 CGTCATCGAT
* *
8085712 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAATAGATGTTC
1 TTTTGAATATTTTTATACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
*
8085771 TTTTGAATATTTTTATACAAATTATTTTTATATTGTTTCATTTAATAAATTAGAAGTTC
1 TTTTGAATATTTTTATACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
8085830 TTT
1 TTT
8085833 CAATGTAGAC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.55
Consensus pattern (59 bp):
TTTTGAATATTTTTATACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
Found at i:8087294 original size:179 final size:179
Alignment explanation
Indices: 8086993--8087352 Score: 702
Period size: 179 Copynumber: 2.0 Consensus size: 179
8086983 TTTTCAAAAA
8086993 TTAAACCCTAAAACCCTAAATAATTAAAAACATAATACCCTAATTTAAAATTTCCTAAACCCTAA
1 TTAAACCCTAAAACCCTAAATAATTAAAAACATAATACCCTAATTTAAAATTTCCTAAACCCTAA
* *
8087058 TCAAACCCCAAAACTTTAAACCTAGGCCCTAATTTGCGAATAACCCACTAGGGATTACACAGCCA
66 TCAAACCCCAAAACTCTAAACCTAGGCCCTAATTTGCGAATAACCCACTAAGGATTACACAGCCA
8087123 AAAGCGCGTCCACGTCAGCGCGCTTTTGCCTGACACAAGGAAAAAAGCT
131 AAAGCGCGTCCACGTCAGCGCGCTTTTGCCTGACACAAGGAAAAAAGCT
8087172 TTAAACCCTAAAACCCTAAATAATTAAAAACATAATACCCTAATTTAAAATTTCCTAAACCCTAA
1 TTAAACCCTAAAACCCTAAATAATTAAAAACATAATACCCTAATTTAAAATTTCCTAAACCCTAA
8087237 TCAAACCCCAAAACTCTAAACCTAGGCCCTAATTTGCGAATAACCCACTAAGGATTACACAGCCA
66 TCAAACCCCAAAACTCTAAACCTAGGCCCTAATTTGCGAATAACCCACTAAGGATTACACAGCCA
8087302 AAAGCGCGTCCACGTCAGCGCGCTTTTGCCTGACACAAGGAAAAAAGCT
131 AAAGCGCGTCCACGTCAGCGCGCTTTTGCCTGACACAAGGAAAAAAGCT
8087351 TT
1 TT
8087353 GACATGAAAG
Statistics
Matches: 179, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
179 179 1.00
ACGTcount: A:0.40, C:0.28, G:0.11, T:0.22
Consensus pattern (179 bp):
TTAAACCCTAAAACCCTAAATAATTAAAAACATAATACCCTAATTTAAAATTTCCTAAACCCTAA
TCAAACCCCAAAACTCTAAACCTAGGCCCTAATTTGCGAATAACCCACTAAGGATTACACAGCCA
AAAGCGCGTCCACGTCAGCGCGCTTTTGCCTGACACAAGGAAAAAAGCT
Found at i:8087616 original size:16 final size:17
Alignment explanation
Indices: 8087589--8087621 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
8087579 ATTTTATGTA
8087589 TTATTTAGAATTTTTAT
1 TTATTTAGAATTTTTAT
8087606 TTATTTA-AATTTTTAT
1 TTATTTAGAATTTTTAT
8087622 GAATTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
TTATTTAGAATTTTTAT
Found at i:8087678 original size:21 final size:21
Alignment explanation
Indices: 8087637--8087678 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8087627 TTTAAAAATA
* *
8087637 TTTATGAAAATTTGGATTTTT
1 TTTATGAAAAGTTGGAATTTT
8087658 TTTAT-AAAAGTTGAGAATTTT
1 TTTATGAAAAGTTG-GAATTTT
8087679 AAAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.52
Consensus pattern (21 bp):
TTTATGAAAAGTTGGAATTTT
Found at i:8088490 original size:30 final size:30
Alignment explanation
Indices: 8088456--8088518 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
8088446 ACTTATTTTA
8088456 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
8088486 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
8088516 TTG
1 TTG
8088519 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:8088675 original size:12 final size:12
Alignment explanation
Indices: 8088641--8088675 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
8088631 TATATATTTT
* *
8088641 AAAATTATATAA
1 AAAATAATATGA
8088653 AAAATAATATGA
1 AAAATAATATGA
8088665 AAAATAATATG
1 AAAATAATATG
8088676 GGCGGGCCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (12 bp):
AAAATAATATGA
Found at i:8092812 original size:23 final size:22
Alignment explanation
Indices: 8092757--8092810 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 22
8092747 ATATTATATC
*
8092757 AATATTAATA-TTTTTATTTAA
1 AATATTAAAATTTTTTATTTAA
*
8092778 AATTTTAAAATTTTTTATCTTAA
1 AATATTAAAATTTTTTAT-TTAA
8092801 AATAATTAAA
1 AAT-ATTAAA
8092811 TTCAAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.30
22 7 0.26
23 7 0.26
24 5 0.19
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
AATATTAAAATTTTTTATTTAA
Found at i:8093243 original size:73 final size:73
Alignment explanation
Indices: 8093124--8093270 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
8093114 GTTTTGCCCG
8093124 TGCGTGAACAGCAGCAACAGCTAATTTTTTTTAAATCATAAAAATTTGATCGTGTTAGCAATGGC
1 TGCGTGAACAGCAGCAACAGCTAATTTTTTTTAAATCATAAAAATTTGATCGTGTTAGCAATGGC
8093189 CGGAGAAT
66 CGGAGAAT
8093197 TGCGTGAACAGCAGCAACAGCTAATTTTTTTTAAATCATAAAAATTTGATCGTGTTAGCAATGGC
1 TGCGTGAACAGCAGCAACAGCTAATTTTTTTTAAATCATAAAAATTTGATCGTGTTAGCAATGGC
8093262 CGGAGAAT
66 CGGAGAAT
8093270 T
1 T
8093271 AATTCGTCTC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (73 bp):
TGCGTGAACAGCAGCAACAGCTAATTTTTTTTAAATCATAAAAATTTGATCGTGTTAGCAATGGC
CGGAGAAT
Found at i:8095031 original size:18 final size:18
Alignment explanation
Indices: 8095008--8095045 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8094998 TGCCAGGTGC
* *
8095008 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
8095026 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
8095044 GT
1 GT
8095046 TTCCCTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:8096790 original size:11 final size:10
Alignment explanation
Indices: 8096775--8096875 Score: 79
Period size: 11 Copynumber: 10.1 Consensus size: 10
8096765 ATTTTTTTAA
8096775 ATTTTAAAAT
1 ATTTTAAAAT
8096785 ACTTTTAAAAT
1 A-TTTTAAAAT
8096796 ACTTTTTTAAAA-
1 A---TTTTAAAAT
**
8096808 ATTTT-TTA-
1 ATTTTAAAAT
8096816 ATTTTAAAAT
1 ATTTTAAAAT
8096826 ATTTTTAAAAT
1 A-TTTTAAAAT
8096837 ATTTTAAAAT
1 ATTTTAAAAT
*
8096847 ATTTT--TA-
1 ATTTTAAAAT
8096854 ATTTTAAAAT
1 ATTTTAAAAT
8096864 ATTTTTAAAAT
1 A-TTTTAAAAT
8096875 A
1 A
8096876 AATATTTTTA
Statistics
Matches: 74, Mismatches: 7, Indels: 19
0.74 0.07 0.19
Matches are distributed among these distances:
7 5 0.07
8 7 0.09
9 6 0.08
10 17 0.23
11 30 0.41
12 1 0.01
13 8 0.11
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:8096802 original size:38 final size:37
Alignment explanation
Indices: 8096759--8096908 Score: 138
Period size: 38 Copynumber: 3.7 Consensus size: 37
8096749 TTTTTTTTAT
*
8096759 TTTTTTATTTTTTTAAATTTTAAAATACTTTTAAAATA
1 TTTTTTATTTTTTT-AATTTTAAAATATTTTTAAAATA
*
8096797 CTTTTTTAAAAATTTTTTAATTTTAAAATATTTTTAAAATA
1 -TTTTTT---ATTTTTTTAATTTTAAAATATTTTTAAAATA
** *
8096838 TTTTAAAATATTTTTAATTTTAAAATATTTTTAAAATAAA
1 TTTT-TTATTTTTTTAATTTTAAAATATTTTTAAAAT--A
8096878 TATTTTTATTTTTGTTTTAATTTTTAAAATA
1 T-TTTTTA--TTT-TTTTAA-TTTTAAAATA
8096909 AATTTTTGGT
Statistics
Matches: 91, Mismatches: 9, Indels: 17
0.78 0.08 0.15
Matches are distributed among these distances:
38 28 0.31
39 6 0.07
40 7 0.08
41 25 0.27
42 9 0.10
43 6 0.07
44 10 0.11
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (37 bp):
TTTTTTATTTTTTTAATTTTAAAATATTTTTAAAATA
Found at i:8096870 original size:17 final size:17
Alignment explanation
Indices: 8096800--8096871 Score: 92
Period size: 17 Copynumber: 4.0 Consensus size: 17
8096790 TAAAATACTT
8096800 TTTTAAAA-ATTTTTTAA
1 TTTTAAAATA-TTTTTAA
8096817 TTTTAAAATATTTTTAAAATA
1 TTTTAAAATATTTTT---A-A
8096838 TTTTAAAATATTTTTAA
1 TTTTAAAATATTTTTAA
8096855 TTTTAAAATATTTTTAA
1 TTTTAAAATATTTTTAA
8096872 AATAAATATT
Statistics
Matches: 50, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
17 31 0.62
18 2 0.04
20 1 0.02
21 16 0.32
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTTAAAATATTTTTAA
Found at i:8097369 original size:96 final size:96
Alignment explanation
Indices: 8097224--8097520 Score: 381
Period size: 94 Copynumber: 3.1 Consensus size: 96
8097214 CCTAAACCCC
*
8097224 AAACCCTAATTTATTTAAGTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTT
1 AAACCCTAATTTATTTGAGTTTTT-CTTAAAAACCCTAAACACTAAACCCTAATCTAA-TTTTTT
*
8097289 TAAAATTTATAATTAATTTACTCAAGTAACCTT
64 TAAAATTTTTAATTAATTTACTCAAGTAACCTT
* *
8097322 AAACCCTAATTTATTTGA-TTTTT-TAAAAAAACCCTTAACACTAAACCCTAATCT-ATTTTTTT
1 AAACCCTAATTTATTTGAGTTTTTCT-TAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTT
8097384 AAAATTTTTAATTAATTTACTCAAGTAATCC-T
65 AAAATTTTTAATTAATTTACTCAAGTAA-CCTT
* * ** * * *
8097416 AAACCCTAATTTAATTGATTTTTTCTTTAAAAACTATAAACACGAAACCTTAATCTAA--TTTTG
1 AAACCCTAATTTATTTGAGTTTTTC-TTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTT
* * *
8097479 AAAATTTTTAATTAATTTAATTAAGGAACCTT
65 AAAATTTTTAATTAATTTACTCAAGTAACCTT
8097511 AAACCCTAAT
1 AAACCCTAAT
8097521 CCCTAATTTA
Statistics
Matches: 177, Mismatches: 15, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
94 54 0.31
95 49 0.28
96 50 0.28
97 7 0.04
98 17 0.10
ACGTcount: A:0.40, C:0.16, G:0.03, T:0.41
Consensus pattern (96 bp):
AAACCCTAATTTATTTGAGTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTA
AAATTTTTAATTAATTTACTCAAGTAACCTT
Found at i:8097514 original size:95 final size:94
Alignment explanation
Indices: 8097224--8097520 Score: 373
Period size: 96 Copynumber: 3.1 Consensus size: 94
8097214 CCTAAACCCC
* *
8097224 AAACCCTAATTTATTTAAGTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTT
1 AAACCCTAATTTATTTGA-TTTTTCTTTAAAAACCCTAAACACTAAACCCTAATCTAA---TTTT
*
8097289 TAAAATTTATAATTAATTTACTCAAGTAACCTT
62 TAAAATTTTTAATTAATTTACTCAAGTAACCTT
** * *
8097322 AAACCCTAATTTATTTGATTTTT-TAAAAAAACCCTTAACACTAAACCCTAATCTATTTTTTTAA
1 AAACCCTAATTTATTTGATTTTTCTTTAAAAACCCTAAACACTAAACCCTAATCTA-ATTTTTAA
8097386 AATTTTTAATTAATTTACTCAAGTAATCC-T
65 AATTTTTAATTAATTTACTCAAGTAA-CCTT
* ** * * *
8097416 AAACCCTAATTTAATTGATTTTTTCTTTAAAAACTATAAACACGAAACCTTAATCTAATTTTGAA
1 AAACCCTAATTTATTTGA-TTTTTCTTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTAA
* * *
8097481 AATTTTTAATTAATTTAATTAAGGAACCTT
65 AATTTTTAATTAATTTACTCAAGTAACCTT
8097511 AAACCCTAAT
1 AAACCCTAAT
8097521 CCCTAATTTA
Statistics
Matches: 174, Mismatches: 20, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
94 52 0.30
95 47 0.27
96 53 0.30
97 5 0.03
98 17 0.10
ACGTcount: A:0.40, C:0.16, G:0.03, T:0.41
Consensus pattern (94 bp):
AAACCCTAATTTATTTGATTTTTCTTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTAAA
ATTTTTAATTAATTTACTCAAGTAACCTT
Found at i:8097589 original size:7 final size:7
Alignment explanation
Indices: 8097562--8097618 Score: 53
Period size: 7 Copynumber: 8.1 Consensus size: 7
8097552 TTGATCCTAA
8097562 AAACCCT
1 AAACCCT
8097569 AAAACCCT
1 -AAACCCT
8097577 -AACCCT
1 AAACCCT
8097583 AAACCCT
1 AAACCCT
***
8097590 AAACTAA
1 AAACCCT
*
8097597 AAACCCA
1 AAACCCT
*
8097604 AAACCCA
1 AAACCCT
8097611 AAACCCT
1 AAACCCT
8097618 A
1 A
8097619 GAAGCGTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
6 6 0.14
7 29 0.69
8 7 0.17
ACGTcount: A:0.51, C:0.39, G:0.00, T:0.11
Consensus pattern (7 bp):
AAACCCT
Found at i:8098043 original size:26 final size:27
Alignment explanation
Indices: 8097990--8098043 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
8097980 ATTTTAGAAT
*
8097990 TTTTTTTATATATTTAAAAATTTTTTA
1 TTTTTTTATATATTTAAAAATTTGTTA
*
8098017 TTTTTTTA-AT-TTTAAATAGTTTGTTA
1 TTTTTTTATATATTTAAA-AATTTGTTA
8098043 T
1 T
8098044 GAAATGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.25
26 10 0.42
27 8 0.33
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (27 bp):
TTTTTTTATATATTTAAAAATTTGTTA
Found at i:8101391 original size:4 final size:4
Alignment explanation
Indices: 8101382--8101407 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8101372 AAGAATGAAC
8101382 ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA AT
8101408 GAACATTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:8118424 original size:4 final size:4
Alignment explanation
Indices: 8118415--8118441 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8118405 AACTTATACA
8118415 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
8118442 AGGGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:8120815 original size:12 final size:12
Alignment explanation
Indices: 8120798--8120822 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8120788 ATTAACAAAA
8120798 TCAAAGCGAGTC
1 TCAAAGCGAGTC
8120810 TCAAAGCGAGTC
1 TCAAAGCGAGTC
8120822 T
1 T
8120823 GGTTCCCGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20
Consensus pattern (12 bp):
TCAAAGCGAGTC
Found at i:8123489 original size:9 final size:9
Alignment explanation
Indices: 8123475--8123505 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8123465 GTTAAACGAA
8123475 TCGAGTTAT
1 TCGAGTTAT
*
8123484 TCGAGTTAA
1 TCGAGTTAT
8123493 TCGAGTTAT
1 TCGAGTTAT
8123502 TCGA
1 TCGA
8123506 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:8123576 original size:9 final size:9
Alignment explanation
Indices: 8123559--8123595 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
8123549 TGAGTTTTCG
8123559 AATTCGAAT
1 AATTCGAAT
*
8123568 AACTCGAAT
1 AATTCGAAT
8123577 AATTCGAAT
1 AATTCGAAT
8123586 AATTCGAAT
1 AATTCGAAT
8123595 A
1 A
8123596 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:8125511 original size:21 final size:21
Alignment explanation
Indices: 8125478--8125537 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
8125468 GGTGGATCAA
*
8125478 CTCTTTTGAGCTTTTGTTCAG
1 CTCTTATGAGCTTTTGTTCAG
* *
8125499 CTCTTATGTGCTTCTGTTCAG
1 CTCTTATGAGCTTTTGTTCAG
8125520 CTCTTATGAGCTTTTGTT
1 CTCTTATGAGCTTTTGTT
8125538 GGCGTGTTTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.10, C:0.20, G:0.18, T:0.52
Consensus pattern (21 bp):
CTCTTATGAGCTTTTGTTCAG
Found at i:8126424 original size:30 final size:30
Alignment explanation
Indices: 8126353--8126424 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
8126343 ATTTTGGGGC
*
8126353 CACACGGCCATGGGACACGGCCGTGTGTGA
1 CACACGGCCATGCGACACGGCCGTGTGTGA
* *
8126383 CATACGACCATGCGACACGGCCGTGTGTGA
1 CACACGGCCATGCGACACGGCCGTGTGTGA
*
8126413 CACATGGCCATG
1 CACACGGCCATG
8126425 TAAGTTCAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.22, C:0.31, G:0.32, T:0.15
Consensus pattern (30 bp):
CACACGGCCATGCGACACGGCCGTGTGTGA
Found at i:8127049 original size:21 final size:21
Alignment explanation
Indices: 8127023--8127064 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8127013 ATCCAATTGA
* *
8127023 ACGTAAGCTTGGGGCTATCGC
1 ACGTAAACTTGGGGCCATCGC
*
8127044 ACGTAAATTTGGGGCCATCGC
1 ACGTAAACTTGGGGCCATCGC
8127065 TTGTTGATAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (21 bp):
ACGTAAACTTGGGGCCATCGC
Found at i:8130013 original size:16 final size:16
Alignment explanation
Indices: 8129976--8130015 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
8129966 TTAATAAAAT
* *
8129976 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
8129992 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
8130008 TAAAATTA
1 TAAAATTA
8130016 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:8130015 original size:22 final size:22
Alignment explanation
Indices: 8129948--8130000 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
8129938 TAATTAAAAT
* * *
8129948 TAAAATTAAAATTATTTTTTAA
1 TAAAATTAAAACTAATTGTTAA
*
8129970 TAAAATTAAAACTAATTGTTAT
1 TAAAATTAAAACTAATTGTTAA
8129992 TAAAATTAA
1 TAAAATTAA
8130001 TTGTTAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
TAAAATTAAAACTAATTGTTAA
Found at i:8130121 original size:9 final size:9
Alignment explanation
Indices: 8130088--8130115 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
8130078 TTTATCAAAT
8130088 TATTAATTG
1 TATTAATTG
8130097 TATTAATTG
1 TATTAATTG
8130106 TATTAATTG
1 TATTAATTG
8130115 T
1 T
8130116 TGTAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:8130125 original size:68 final size:68
Alignment explanation
Indices: 8130004--8130213 Score: 388
Period size: 68 Copynumber: 3.1 Consensus size: 68
8129994 AAATTAATTG
*
8130004 TTAGTAAAATTATCAAATTATTAATTG--TTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
8130067 TGA
66 TGA
8130070 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
8130135 TGA
66 TGA
*
8130138 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
8130203 TGA
66 TGA
8130206 TTAGTAAA
1 TTAGTAAA
8130214 ACAAATTTGA
Statistics
Matches: 140, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
66 26 0.19
68 114 0.81
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.46
Consensus pattern (68 bp):
TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
TGA
Found at i:8130168 original size:9 final size:9
Alignment explanation
Indices: 8130156--8130183 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
8130146 TTTATCAAAT
8130156 TATTAATTG
1 TATTAATTG
8130165 TATTAATTG
1 TATTAATTG
8130174 TATTAATTG
1 TATTAATTG
8130183 T
1 T
8130184 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:8130327 original size:23 final size:24
Alignment explanation
Indices: 8130280--8130325 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
8130270 AAATAAACTT
8130280 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAACTATTATATTTTA
8130304 AAAATAAAAAA-TATATATATTT
1 AAAATAAAAAACTAT-TATATTT
8130326 AATATTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
AAAATAAAAAACTATTATATTTTA
Found at i:8135977 original size:129 final size:129
Alignment explanation
Indices: 8135747--8136003 Score: 433
Period size: 129 Copynumber: 2.0 Consensus size: 129
8135737 TCCAAGAAGC
8135747 TTTATGATGACAGTTTTGGAAAAGCGTATGAATTTTATCAGAAAATTTAATCGATGGGACTCTAT
1 TTTATGATGACAGTTTTGGAAAAGCGTATGAATTTTATCAGAAAATTTAATCGATGGGACTCTAT
* * * *
8135812 TCACGAAGTGTATTGAAACTTCACCTAACAACAACTCAATATCCTTCTCATCCACAGCCTATCT
66 TCACAAAGTGTATTAAAACTTCACCTAACAACAACTCAATATCCTCCTCATCAACAGCCTATCT
* * *
8135876 TTTATGATGATAGTTTTGGACAAGTGTATGAATTTTATCAGAAAATTTAATCGATGGGACTCTAT
1 TTTATGATGACAGTTTTGGAAAAGCGTATGAATTTTATCAGAAAATTTAATCGATGGGACTCTAT
* *
8135941 TCACAAAGTGTATTAAAACTTCATCTACCAACAACTCAATATCCTCCTCATCAACAGCCTATC
66 TCACAAAGTGTATTAAAACTTCACCTAACAACAACTCAATATCCTCCTCATCAACAGCCTATC
8136004 CTTCCTCCAT
Statistics
Matches: 119, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
129 119 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (129 bp):
TTTATGATGACAGTTTTGGAAAAGCGTATGAATTTTATCAGAAAATTTAATCGATGGGACTCTAT
TCACAAAGTGTATTAAAACTTCACCTAACAACAACTCAATATCCTCCTCATCAACAGCCTATCT
Found at i:8143428 original size:19 final size:19
Alignment explanation
Indices: 8143404--8143442 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
8143394 TCCGCAATCA
* *
8143404 TATTTCTAGATTTTCTTTT
1 TATTTCAAGATTTTATTTT
*
8143423 TATTTCAATATTTTATTTT
1 TATTTCAAGATTTTATTTT
8143442 T
1 T
8143443 CCCCGTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.69
Consensus pattern (19 bp):
TATTTCAAGATTTTATTTT
Found at i:8143523 original size:5 final size:5
Alignment explanation
Indices: 8143513--8143537 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8143503 GGTTGTAGAC
8143513 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
8143538 CAGATTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:8147156 original size:44 final size:44
Alignment explanation
Indices: 8147089--8147178 Score: 146
Period size: 44 Copynumber: 2.0 Consensus size: 44
8147079 TTGTTGTTGC
* *
8147089 TATCATCTTTTAAAAGAACTCCATCAAGAGTCCCTAGACTTTCT
1 TATCATCTTCTAAAAGAAATCCATCAAGAGTCCCTAGACTTTCT
8147133 TATCATCTTCTACAAA-AAATCCATCAAGAGTCCCTAGACTTTCT
1 TATCATCTTCTA-AAAGAAATCCATCAAGAGTCCCTAGACTTTCT
8147177 TA
1 TA
8147179 ACCTTTCTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 40 0.93
45 3 0.07
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.33
Consensus pattern (44 bp):
TATCATCTTCTAAAAGAAATCCATCAAGAGTCCCTAGACTTTCT
Found at i:8151595 original size:25 final size:26
Alignment explanation
Indices: 8151548--8151599 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8151538 TATAAACATA
8151548 TATTCAGTTTAATAGCAACCACATTT
1 TATTCAGTTTAATAGCAACCACATTT
8151574 TATTCAGTTTAATAGCAA-CACATTT
1 TATTCAGTTTAATAGCAACCACATTT
8151599 T
1 T
8151600 CTCAATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.35, C:0.17, G:0.08, T:0.40
Consensus pattern (26 bp):
TATTCAGTTTAATAGCAACCACATTT
Found at i:8152405 original size:3 final size:3
Alignment explanation
Indices: 8152397--8152455 Score: 100
Period size: 3 Copynumber: 19.7 Consensus size: 3
8152387 TTTTGTTTTC
* *
8152397 ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT ATT ATT ATT ATT ATT GTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8152445 ATT ATT ATT AT
1 ATT ATT ATT AT
8152456 AACATATAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8156728 original size:50 final size:50
Alignment explanation
Indices: 8156613--8156805 Score: 260
Period size: 50 Copynumber: 3.8 Consensus size: 50
8156603 GATAATAACA
* ** * *
8156613 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
8156664 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
8156714 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
8156764 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
8156806 TTACCCAAAT
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
50 91 0.73
51 33 0.27
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:8156921 original size:13 final size:13
Alignment explanation
Indices: 8156900--8156931 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8156890 GATTGGATCA
*
8156900 TCATCAAATAAAT
1 TCATAAAATAAAT
8156913 TCATAAAATAAAT
1 TCATAAAATAAAT
8156926 TCATAA
1 TCATAA
8156932 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:8157178 original size:30 final size:30
Alignment explanation
Indices: 8157143--8157200 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8157133 CCTCGACTCT
*
8157143 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
8157173 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
8157201 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:8164263 original size:50 final size:50
Alignment explanation
Indices: 8164148--8164340 Score: 260
Period size: 50 Copynumber: 3.8 Consensus size: 50
8164138 GATAATAACA
* ** * *
8164148 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
8164199 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
8164249 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
8164299 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
8164341 TTACCCAAAT
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
50 91 0.73
51 33 0.27
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:8164456 original size:13 final size:13
Alignment explanation
Indices: 8164435--8164466 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8164425 GCTTGGATCA
*
8164435 TCATCAAATAAAT
1 TCATAAAATAAAT
8164448 TCATAAAATAAAT
1 TCATAAAATAAAT
8164461 TCATAA
1 TCATAA
8164467 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:8164712 original size:30 final size:30
Alignment explanation
Indices: 8164678--8164735 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8164668 CCTCGACTCT
**
8164678 AACTTTTTTAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
8164708 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
8164736 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.43
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:8172411 original size:5 final size:5
Alignment explanation
Indices: 8172397--8172439 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
8172387 AAAAAAGTGC
* * *
8172397 ATAAC ATAAA ATAAAA ATAGA ATAGA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA AT-AAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
8172440 CCTAATCTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
5 29 0.85
6 5 0.15
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:8184745 original size:22 final size:22
Alignment explanation
Indices: 8184696--8184744 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
8184686 ATATAGTGGA
8184696 ATTTTTATTTTGAGTTTAATTT
1 ATTTTTATTTTGAGTTTAATTT
*
8184718 ATTTTTATTTT-A-TCTTATTTT
1 ATTTTTATTTTGAGT-TTAATTT
8184739 ATTTTT
1 ATTTTT
8184745 TTCTAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 1 0.04
21 13 0.52
22 11 0.44
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (22 bp):
ATTTTTATTTTGAGTTTAATTT
Found at i:8190783 original size:9 final size:9
Alignment explanation
Indices: 8190769--8190803 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
8190759 TATAGAGTGG
8190769 CATGCTTCA
1 CATGCTTCA
8190778 CATGCTTCA
1 CATGCTTCA
* *
8190787 TATGTTTCA
1 CATGCTTCA
8190796 CATGCTTC
1 CATGCTTC
8190804 CATTTCAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.20, C:0.29, G:0.11, T:0.40
Consensus pattern (9 bp):
CATGCTTCA
Found at i:8199988 original size:17 final size:17
Alignment explanation
Indices: 8199968--8200002 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
8199958 GTGAGCACGT
8199968 AGTGTTGATGAGCTCAC
1 AGTGTTGATGAGCTCAC
*
8199985 AGTGTTGGTGAGCTCAC
1 AGTGTTGATGAGCTCAC
8200002 A
1 A
8200003 AATATGGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (17 bp):
AGTGTTGATGAGCTCAC
Found at i:8200014 original size:34 final size:34
Alignment explanation
Indices: 8199976--8200059 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 34
8199966 GTAGTGTTGA
8199976 TGAGCTCACAGTGTTGGTGAGCTCACAAATATGG
1 TGAGCTCACAGTGTTGGTGAGCTCACAAATATGG
** * *** *
8200010 TGAGCTCGTATTGTTGGTGAGCTTGTAGATATGG
1 TGAGCTCACAGTGTTGGTGAGCTCACAAATATGG
8200044 TGAGCTCACAGTGTTG
1 TGAGCTCACAGTGTTG
8200060 AAGTCTGGGT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.21, C:0.14, G:0.32, T:0.32
Consensus pattern (34 bp):
TGAGCTCACAGTGTTGGTGAGCTCACAAATATGG
Found at i:8204337 original size:34 final size:34
Alignment explanation
Indices: 8204299--8204381 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 34
8204289 GCAAGGTAAG
* *
8204299 GAGCTCGCAGTGTTGGTGAGCTCACAGATATAAT
1 GAGCTCACAGTGTTGGTGAGCTCACAAATATAAT
* * * ** *
8204333 GAGCTCATAGTATTGGTGAGTTTGCAAATATAGT
1 GAGCTCACAGTGTTGGTGAGCTCACAAATATAAT
8204367 GAGCTCACAGTGTTG
1 GAGCTCACAGTGTTG
8204382 AAGTCTAGGT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (34 bp):
GAGCTCACAGTGTTGGTGAGCTCACAAATATAAT
Found at i:8210830 original size:40 final size:40
Alignment explanation
Indices: 8210775--8210856 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
8210765 CACATAAACC
8210775 TTAGTTTTTACAGTCTTTACATTGTTCTCACTCATCATCA
1 TTAGTTTTTACAGTCTTTACATTGTTCTCACTCATCATCA
8210815 TTAGTTTTTACAGTCTTTACATTGTTCTCACTCATCATCA
1 TTAGTTTTTACAGTCTTTACATTGTTCTCACTCATCATCA
8210855 TT
1 TT
8210857 CTTTCAATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.22, C:0.22, G:0.07, T:0.49
Consensus pattern (40 bp):
TTAGTTTTTACAGTCTTTACATTGTTCTCACTCATCATCA
Found at i:8213791 original size:124 final size:124
Alignment explanation
Indices: 8213568--8213820 Score: 470
Period size: 124 Copynumber: 2.0 Consensus size: 124
8213558 ATGAAATATG
* *
8213568 AGCCCTCAAATAGAAATTCCAAATTACCATATTTTGTTACTCAAACTCAATGGTGAATGTTAAGT
1 AGCCCTCAAATAGAAATTCAAAATTACCATATTCTGTTACTCAAACTCAATGGTGAATGTTAAGT
* *
8213633 ATGCATCAAACAAGGTATGCTCAATTTTCTACATTTTTTTGATACATTTAGAGGATCAT
66 ATGCATCAAACAAGGAATGCTCAATTTTCAACATTTTTTTGATACATTTAGAGGATCAT
8213692 AGCCCTCAAATAGAAATTCAAAATTACCATATTCTGTTACTCAAACTCAATGGTGAATGTTAAGT
1 AGCCCTCAAATAGAAATTCAAAATTACCATATTCTGTTACTCAAACTCAATGGTGAATGTTAAGT
8213757 ATGCATCAAACAAGGAATGCTCAATTTTCAACATTTTTTTGATACATTTAGAGGATCAT
66 ATGCATCAAACAAGGAATGCTCAATTTTCAACATTTTTTTGATACATTTAGAGGATCAT
8213816 AGCCC
1 AGCCC
8213821 CATAACCAAA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
124 125 1.00
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.34
Consensus pattern (124 bp):
AGCCCTCAAATAGAAATTCAAAATTACCATATTCTGTTACTCAAACTCAATGGTGAATGTTAAGT
ATGCATCAAACAAGGAATGCTCAATTTTCAACATTTTTTTGATACATTTAGAGGATCAT
Found at i:8214638 original size:2 final size:2
Alignment explanation
Indices: 8214631--8214673 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8214621 AGAAGCAAAC
8214631 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8214673 A
1 A
8214674 CCGCATTGTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8215574 original size:13 final size:13
Alignment explanation
Indices: 8215558--8215595 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
8215548 TATTTTATTA
*
8215558 TTATACTTAATAT
1 TTATATTTAATAT
8215571 TTAT-TTATAATAT
1 TTATATT-TAATAT
8215584 TTATATTTAATA
1 TTATATTTAATA
8215596 AAAATATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 1 0.05
13 19 0.86
14 2 0.09
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (13 bp):
TTATATTTAATAT
Found at i:8223881 original size:12 final size:12
Alignment explanation
Indices: 8223864--8223891 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8223854 CAGATTTTCT
8223864 AGAACCATCATC
1 AGAACCATCATC
8223876 AGAACCATCATC
1 AGAACCATCATC
8223888 AGAA
1 AGAA
8223892 ACTCACTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.29, G:0.11, T:0.14
Consensus pattern (12 bp):
AGAACCATCATC
Found at i:8225369 original size:39 final size:39
Alignment explanation
Indices: 8225326--8225403 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
8225316 ACTTAAGGAG
8225326 TAAGCCAATTAAGATCTAATTTTTCCCTACTTGCTCCAT
1 TAAGCCAATTAAGATCTAATTTTTCCCTACTTGCTCCAT
8225365 TAAGCCAATTAAGATCTAATTTTTCCCTACTTGCTCCAT
1 TAAGCCAATTAAGATCTAATTTTTCCCTACTTGCTCCAT
8225404 CACTACTACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (39 bp):
TAAGCCAATTAAGATCTAATTTTTCCCTACTTGCTCCAT
Found at i:8238337 original size:31 final size:31
Alignment explanation
Indices: 8238274--8238341 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
8238264 AAAAAAGTTA
* * **
8238274 AGTGACTTAAATAAAATTTTTTGAATGGTTC
1 AGTGACTTAAATAAAATCTTTCGAATAATTC
8238305 AGTGACTTAAATGAAAA-CTTTCGAATAATTC
1 AGTGACTTAAAT-AAAATCTTTCGAATAATTC
8238336 AGTGAC
1 AGTGAC
8238342 CAAATTGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 28 0.88
32 4 0.12
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (31 bp):
AGTGACTTAAATAAAATCTTTCGAATAATTC
Found at i:8243153 original size:6 final size:6
Alignment explanation
Indices: 8243144--8243183 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
8243134 TCTCCTCTTC
*
8243144 CTCTAA CTCTAA CTCTTAA CTCTGA CTCTAA CTCTAA CTC
1 CTCTAA CTCTAA CTC-TAA CTCTAA CTCTAA CTCTAA CTC
8243184 CTGTCCTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.28, C:0.35, G:0.03, T:0.35
Consensus pattern (6 bp):
CTCTAA
Found at i:8243171 original size:19 final size:18
Alignment explanation
Indices: 8243144--8243183 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
8243134 TCTCCTCTTC
8243144 CTCTAACTCTAACTCTTAA
1 CTCTAACTCTAACTC-TAA
*
8243163 CTCTGACTCTAACTCTAA
1 CTCTAACTCTAACTCTAA
8243181 CTC
1 CTC
8243184 CTGTCCTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.28, C:0.35, G:0.03, T:0.35
Consensus pattern (18 bp):
CTCTAACTCTAACTCTAA
Found at i:8247861 original size:16 final size:16
Alignment explanation
Indices: 8247822--8247862 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
8247812 ATATTAAAAA
8247822 TATAATTTTATCATTT
1 TATAATTTTATCATTT
8247838 TA-ATATTTTAT-ATATT
1 TATA-ATTTTATCAT-TT
8247854 TATAATTTT
1 TATAATTTT
8247863 TAAAAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 3 0.14
16 18 0.82
17 1 0.05
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TATAATTTTATCATTT
Found at i:8254865 original size:22 final size:21
Alignment explanation
Indices: 8254811--8254868 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
8254801 TATAATAACA
8254811 AATTTAATTTTT-A-TTGTTT
1 AATTTAATTTTTAATTTGTTT
8254830 ATATTT--TTTGTTAATTTAGTTT
1 A-ATTTAATTT-TTAATTT-GTTT
8254852 AATTTAATTTTTAATTT
1 AATTTAATTTTTAATTT
8254869 TTAAATATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
18 3 0.09
19 3 0.09
20 5 0.16
21 6 0.19
22 12 0.38
23 3 0.09
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (21 bp):
AATTTAATTTTTAATTTGTTT
Found at i:8257626 original size:3 final size:3
Alignment explanation
Indices: 8257618--8257657 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
8257608 TTCTATTCTG
*
8257618 TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8257658 TTCTGTGTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8259757 original size:20 final size:22
Alignment explanation
Indices: 8259734--8259780 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
8259724 ATTTTCATAT
8259734 TAAAATAAATT-AAATTT-AAA
1 TAAAATAAATTAAAATTTAAAA
**
8259754 TAAAA-ATTTTAAAATTTAAAA
1 TAAAATAAATTAAAATTTAAAA
8259775 TAAAAT
1 TAAAAT
8259781 TACTGATGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 11 0.50
21 8 0.36
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
TAAAATAAATTAAAATTTAAAA
Found at i:8260737 original size:2 final size:2
Alignment explanation
Indices: 8260730--8260771 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
8260720 GGTGCAGGTG
8260730 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8260772 GATTTGGGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8265457 original size:15 final size:15
Alignment explanation
Indices: 8265437--8265465 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8265427 TTCATACATT
8265437 TTCTTTTTATCTTTG
1 TTCTTTTTATCTTTG
8265452 TTCTTTTTATCTTT
1 TTCTTTTTATCTTT
8265466 ATTTCATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.14, G:0.03, T:0.76
Consensus pattern (15 bp):
TTCTTTTTATCTTTG
Found at i:8265721 original size:21 final size:21
Alignment explanation
Indices: 8265697--8265749 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
8265687 AATAGCGGTG
*
8265697 GCGGTGAGATTGTATACTGTA
1 GCGGTGAGATTGGATACTGTA
8265718 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTGGATACTGTA
8265739 GCGGTGAGATT
1 GCGGTGAGATT
8265750 AGAAACAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.23, C:0.09, G:0.38, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTGGATACTGTA
Found at i:8271596 original size:7 final size:7
Alignment explanation
Indices: 8271584--8271620 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
8271574 ATGCTTGTGA
8271584 TATATGG
1 TATATGG
8271591 TATATGG
1 TATATGG
8271598 TATATGG
1 TATATGG
8271605 TATATGG
1 TATATGG
8271612 TATATGG
1 TATATGG
8271619 TA
1 TA
8271621 CTAACCTCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (7 bp):
TATATGG
Found at i:8281404 original size:20 final size:21
Alignment explanation
Indices: 8281377--8281426 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
8281367 TTTTTATACA
8281377 TTTT-AAAA-TAATTTTTAAT
1 TTTTAAAAATTAATTTTTAAT
* *
8281396 TTTTAAAAATTATTTTTTGAT
1 TTTTAAAAATTAATTTTTAAT
8281417 TTTTATAAAA
1 TTTTA-AAAA
8281427 AAATAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 4 0.15
20 4 0.15
21 14 0.54
22 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTAAAAATTAATTTTTAAT
Found at i:8281672 original size:2 final size:2
Alignment explanation
Indices: 8281665--8281711 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
8281655 AGAAGGGAGA
8281665 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8281707 -T AT AT
1 AT AT AT
8281712 GTGTTAGTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:8282204 original size:5 final size:5
Alignment explanation
Indices: 8282190--8282227 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
8282180 TTATCATGTG
8282190 TATA- TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
8282228 AGGTTTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:8284542 original size:5 final size:5
Alignment explanation
Indices: 8284518--8284552 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
8284508 AAAATGAGAG
*
8284518 AAGAA AA-AA AAGAA ATGAA AAGAA AAGAA AAGAA A
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA A
8284553 TCCATGAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (5 bp):
AAGAA
Found at i:8286217 original size:14 final size:14
Alignment explanation
Indices: 8286148--8286218 Score: 52
Period size: 14 Copynumber: 4.7 Consensus size: 14
8286138 CCACTAAATT
8286148 ATTTAATTAAGCTTAA
1 ATTTAATTAA--TTAA
*
8286164 AGTTTTAATTAATTTA
1 A--TTTAATTAATTAA
*
8286180 GTTTAATTAAATTAA
1 ATTTAATT-AATTAA
* * *
8286195 ATATGATTAGTTAA
1 ATTTAATTAATTAA
8286209 ATTTAATTAA
1 ATTTAATTAA
8286219 AGTATAAAAG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
14 19 0.45
15 10 0.24
16 4 0.10
18 9 0.21
ACGTcount: A:0.44, C:0.01, G:0.07, T:0.48
Consensus pattern (14 bp):
ATTTAATTAATTAA
Found at i:8286569 original size:13 final size:13
Alignment explanation
Indices: 8286551--8286575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8286541 GTGCATAAAT
8286551 TGAAAATTTTATG
1 TGAAAATTTTATG
8286564 TGAAAATTTTAT
1 TGAAAATTTTAT
8286576 AATTATAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TGAAAATTTTATG
Found at i:8295997 original size:3 final size:3
Alignment explanation
Indices: 8295919--8295977 Score: 100
Period size: 3 Copynumber: 19.7 Consensus size: 3
8295909 TAATGGTAAG
* *
8295919 AAT AAT AAT AAT AAT GAT ATT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8295967 AAT AAT AAT AA
1 AAT AAT AAT AA
8295978 CAACAACAAC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:8297941 original size:128 final size:129
Alignment explanation
Indices: 8297738--8298097 Score: 569
Period size: 130 Copynumber: 2.8 Consensus size: 129
8297728 AGGATTATCA
* * * *
8297738 GCTTCAATATGCTTCCTTACACTTGAAGATAAGATTTCGCCATCTTCGATCTGCTCCGGTACTGC
1 GCTTAAATCTGCTTCCTTACACTTGAAGATAAGA-TTCGCCGTCTTCGATCTGCTCCGCTACTGC
*
8297803 TTAGGGAGACAAGATC-TGTAATTTCCAACCTATTCCACTGCTGACCAGGGACATAGGACTTGTG
65 TTAGGGAGACAAGATCTTGTAATTTCCAACCTATTCCACTGCTGACCAGGGACATAGAACTTGTG
*
8297867 GCTTAAATCTGCTTCCTTACACTTGAGGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCT
1 GCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCT
* *
8297932 TAGGGAGACAAGATCTTGTAATTTCCTAACCTATTCCACTGCTGAGCAGGGACATAGAACTTTTG
66 TAGGGAGACAAGATCTTGTAATTTCC-AACCTATTCCACTGCTGACCAGGGACATAGAACTTGTG
* * * **
8297997 GCTTAAATCTACTTCCTTACACTTGAAGATAAGATTCACCGTCTTTGATCTGCTCCGCTACTAAT
1 GCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCT
8298062 TAGGGAGACAAGATCTTGTAATTTCCCAACCTATTC
66 TAGGGAGACAAGATCTTGTAATTT-CCAACCTATTC
8298098 TGCTGCAACC
Statistics
Matches: 214, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
128 44 0.21
129 41 0.19
130 127 0.59
131 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (129 bp):
GCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCT
TAGGGAGACAAGATCTTGTAATTTCCAACCTATTCCACTGCTGACCAGGGACATAGAACTTGTG
Found at i:8298204 original size:88 final size:88
Alignment explanation
Indices: 8298100--8298577 Score: 753
Period size: 88 Copynumber: 5.4 Consensus size: 88
8298090 ACCTATTCTG
*
8298100 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCAGCGTAGAAAGGCAAGA
1 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCAGCGCAGAAAGGCAAGA
*
8298165 TTTGCTATCTTTAACCTGCTCCA
66 TCTGCTATCTTTAACCTGCTCCA
* *
8298188 CTACAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCAGCGCAGGAAGGCAAGA
1 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCAGCGCAGAAAGGCAAGA
8298253 TCTGCTATCTTTAACCTGCTCCA
66 TCTGCTATCTTTAACCTGCTCCA
*
8298276 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGTTGTCAGCGCA-AGAAGGCAAG
1 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCAGCGCAGA-AAGGCAAG
8298340 ATCTGCTATCTTTAACCTGCTCCA
65 ATCTGCTATCTTTAACCTGCTCCA
* * * * * *
8298364 TTGCAACCGAGGGAGGCAAGGCCTTGTTTCTTCGATCTGCTTCACTGTCATCACA-AGAAGGCAA
1 CTGCAACCGAGGGAGGCAAGG-CTGGTATCTTCGATCTGCTTCGCTGTCAGCGCAGA-AAGGCAA
*
8298428 GATCTGCTATCTTTAACCTGCTCTA
64 GATCTGCTATCTTTAACCTGCTCCA
* * *
8298453 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGTTGTCAGCGTAGGAAGGCAAGA
1 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCAGCGCAGAAAGGCAAGA
*
8298518 TTTGCTATCTTTAACCTGCTCCA
66 TCTGCTATCTTTAACCTGCTCCA
* *
8298541 CTGCAACCGAGGGAGGCAAGGCTGGTTTCTTTGATCT
1 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCT
8298578 TCACTGATTT
Statistics
Matches: 359, Mismatches: 28, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
88 279 0.78
89 80 0.22
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.26
Consensus pattern (88 bp):
CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCAGCGCAGAAAGGCAAGA
TCTGCTATCTTTAACCTGCTCCA
Found at i:8298445 original size:265 final size:264
Alignment explanation
Indices: 8298101--8298577 Score: 803
Period size: 265 Copynumber: 1.8 Consensus size: 264
8298091 CCTATTCTGC
* **
8298101 TGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCAGCGTAGAAAGGCAAGAT
1 TGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCAGCCAAGAAAGGCAAGAT
*
8298166 TTGCTATCTTTAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCG
66 CTGCTATCTTTAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCG
8298231 CTGTCAGCGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAG
131 CTGTCAGCGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAG
8298296 GCTGGTATCTTCGATCTGCTTCGTTGTCAGCGCAAGAAGGCAAGATCTGCTATCTTTAACCTGCT
196 GCTGGTATCTTCGATCTGCTTCGTTGTCAGCGCAAGAAGGCAAGATCTGCTATCTTTAACCTGCT
8298361 CCAT
261 CCAT
* * *
8298365 TGCAACCGAGGGAGGCAAGGCCTTGTTTCTTCGATCTGCTTCACTGTCATCACAAG-AAGGCAAG
1 TGCAACCGAGGGAGGCAAGG-CTGGTATCTTCGATCTGCTTCACTGTCAGC-CAAGAAAGGCAAG
* *
8298429 ATCTGCTATCTTTAACCTGCTCTACTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTT
64 ATCTGCTATCTTTAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTT
* * *
8298494 CGTTGTCAGCGTAGGAAGGCAAGATTTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCA
129 CGCTGTCAGCGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCA
* *
8298559 AGGCTGGTTTCTTTGATCT
194 AGGCTGGTATCTTCGATCT
8298578 TCACTGATTT
Statistics
Matches: 197, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
264 20 0.10
265 175 0.89
266 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.26
Consensus pattern (264 bp):
TGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCAGCCAAGAAAGGCAAGAT
CTGCTATCTTTAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCG
CTGTCAGCGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAG
GCTGGTATCTTCGATCTGCTTCGTTGTCAGCGCAAGAAGGCAAGATCTGCTATCTTTAACCTGCT
CCAT
Found at i:8298494 original size:177 final size:175
Alignment explanation
Indices: 8298100--8298577 Score: 794
Period size: 177 Copynumber: 2.7 Consensus size: 175
8298090 ACCTATTCTG
* *
8298100 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCAGCGTAGAAAGGCAAGA
1 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGTTGTCAGCGAAG-AAGGCAAGA
* *
8298165 TTTGCTATCTTTAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTC
65 TTTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTTTCTTCGATCTGCTTC
* * *
8298230 GCTGTCAGCGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCA
130 ACTGTCAGCACAAGAAGGCAAGATCTGCTATCTTTAACCTGCTCCA
8298276 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGTTGTCAGCGCAAGAAGGCAAGA
1 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGTTGTCAGCG-AAGAAGGCAAGA
* * *
8298341 TCTGCTATCTTTAACCTGCTCCATTGCAACCGAGGGAGGCAAGGCCTTGTTTCTTCGATCTGCTT
65 TTTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGG-CTGGTTTCTTCGATCTGCTT
* *
8298406 CACTGTCATCACAAGAAGGCAAGATCTGCTATCTTTAACCTGCTCTA
129 CACTGTCAGCACAAGAAGGCAAGATCTGCTATCTTTAACCTGCTCCA
*
8298453 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGTTGTCAGCGTAGGAAGGCAAGA
1 CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGTTGTCAGCG-AAGAAGGCAAGA
*
8298518 TTTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTTTCTTTGATCT
65 TTTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTTTCTTCGATCT
8298578 TCACTGATTT
Statistics
Matches: 282, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
176 115 0.41
177 167 0.59
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.26
Consensus pattern (175 bp):
CTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGTTGTCAGCGAAGAAGGCAAGAT
TTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTTTCTTCGATCTGCTTCA
CTGTCAGCACAAGAAGGCAAGATCTGCTATCTTTAACCTGCTCCA
Found at i:8305169 original size:3 final size:3
Alignment explanation
Indices: 8305161--8305203 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
8305151 TAATGGTAAG
* *
8305161 AAT AAT AAT AAT AAT GAT AAT AAT AAT AAC AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8305204 GTACGAAAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:8317041 original size:12 final size:12
Alignment explanation
Indices: 8317003--8317034 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
8316993 TCAGTGAGTT
8317003 ACACGGGCACGG
1 ACACGGGCACGG
8317015 ACACGGGCACGG
1 ACACGGGCACGG
8317027 ACACGGGC
1 ACACGGGC
8317035 TGGGACATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.34, G:0.41, T:0.00
Consensus pattern (12 bp):
ACACGGGCACGG
Found at i:8330084 original size:16 final size:16
Alignment explanation
Indices: 8330063--8330111 Score: 89
Period size: 16 Copynumber: 3.1 Consensus size: 16
8330053 TTCGCTGTAT
8330063 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
8330079 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
8330095 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
8330111 T
1 T
8330112 AGCAAATCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.37, C:0.04, G:0.37, T:0.22
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:8330139 original size:56 final size:55
Alignment explanation
Indices: 8330077--8330206 Score: 172
Period size: 56 Copynumber: 2.3 Consensus size: 55
8330067 ATAGAGGCGT
8330077 AATGGAATAGAGGTGTAATGGAATAGAGGCGTAATAGCAAATCAAT-TATTTGGCTG
1 AATGGAATAGAGGTGTAATGGAATAGAGGCGTAATAG-AAATC-ATGTATTTGGCTG
** * * * * *
8330133 AATGGAATAGAGGCATAATGGAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTG
1 AATGGAATAGAGGTGTAATGGAATAGAGGCGTAATAGAAATCATGTATTTGGCTG
8330188 AATGGAATAGAGGTGTAAT
1 AATGGAATAGAGGTGTAAT
8330207 AGCATAATGG
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
54 1 0.02
55 28 0.44
56 35 0.55
ACGTcount: A:0.35, C:0.05, G:0.30, T:0.29
Consensus pattern (55 bp):
AATGGAATAGAGGTGTAATGGAATAGAGGCGTAATAGAAATCATGTATTTGGCTG
Found at i:8330154 original size:16 final size:16
Alignment explanation
Indices: 8330133--8330167 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
8330123 TATTTGGCTG
8330133 AATGGAATAGAGGCAT
1 AATGGAATAGAGGCAT
*
8330149 AATGGAATAGAGGCGT
1 AATGGAATAGAGGCAT
8330165 AAT
1 AAT
8330168 AGTATTCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.31, T:0.20
Consensus pattern (16 bp):
AATGGAATAGAGGCAT
Found at i:8330373 original size:16 final size:16
Alignment explanation
Indices: 8330336--8330377 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
8330326 TTAATCATAT
*
8330336 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
8330352 TT-AAATATATTATAA
1 TTAAAATATATTATAA
8330367 TTAAAATATAT
1 TTAAAATATAT
8330378 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:8330384 original size:14 final size:15
Alignment explanation
Indices: 8330345--8330386 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8330335 TTTAAACATA
*
8330345 ATTATTATTAAATAT
1 ATTATAATTAAATAT
8330360 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
8330374 A-TATAATTTAATA
1 ATTATAATTAAATA
8330387 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:8330634 original size:30 final size:30
Alignment explanation
Indices: 8330574--8330636 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
8330564 ATAAAATATA
* *
8330574 AATTAACATAATAATTATTAAATATATTTT
1 AATTAAAATAATAATTAATAAATATATTTT
8330604 AATTAAAATATATAATTTAATAAA-AT-TTTT
1 AATTAAAATA-ATAA-TTAATAAATATATTTT
8330634 AAT
1 AAT
8330637 AATTAATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 16 0.55
31 6 0.21
32 7 0.24
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (30 bp):
AATTAAAATAATAATTAATAAATATATTTT
Found at i:8330636 original size:17 final size:18
Alignment explanation
Indices: 8330595--8330629 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8330585 TAATTATTAA
*
8330595 ATATATTTTAATTAAAAT
1 ATATAATTTAATTAAAAT
8330613 ATATAATTTAA-TAAAAT
1 ATATAATTTAATTAAAAT
8330630 TTTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATAATTTAATTAAAAT
Found at i:8330736 original size:18 final size:17
Alignment explanation
Indices: 8330713--8330749 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
8330703 AATTATTATT
8330713 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
8330729 AAATATATGATTTAATA
1 AAATATATGATTTAATA
8330746 AAAT
1 AAAT
8330750 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:8330761 original size:120 final size:120
Alignment explanation
Indices: 8330339--8330750 Score: 754
Period size: 120 Copynumber: 3.4 Consensus size: 120
8330329 ATCATATTTA
*
8330339 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
8330404 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
8330459 AACATAATTATTATTAAATATA-TTAAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
8330523 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* *
8330578 AACATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTTTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
8330643 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
8330698 AACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
8330751 TAAAATAATT
Statistics
Matches: 282, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
119 114 0.40
120 168 0.60
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:8330927 original size:18 final size:18
Alignment explanation
Indices: 8330904--8331026 Score: 56
Period size: 18 Copynumber: 6.8 Consensus size: 18
8330894 TTAATATTAA
8330904 ATATAATTTAATAATGAT
1 ATATAATTTAATAATGAT
* **
8330922 ATATAATTTCATAAAATTCT
1 ATATAATTT-A-ATAATGAT
* * **
8330942 ATATAA-TAAATTATCTT
1 ATATAATTTAATAATGAT
* *
8330959 ATATGAATTTATACAAT-TT
1 ATAT-AATTTA-ATAATGAT
* * *
8330978 AAAATAA-TTAAT-ATTAA
1 -ATATAATTTAATAATGAT
8330995 ATATAATTTAATAATGAT
1 ATATAATTTAATAATGAT
*
8331013 ATATAATTTCATAA
1 ATATAATTTAATAA
8331027 AATTGTTAAT
Statistics
Matches: 77, Mismatches: 19, Indels: 18
0.68 0.17 0.16
Matches are distributed among these distances:
16 7 0.09
17 14 0.18
18 31 0.40
19 8 0.10
20 17 0.22
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (18 bp):
ATATAATTTAATAATGAT
Found at i:8330962 original size:91 final size:91
Alignment explanation
Indices: 8330766--8331061 Score: 465
Period size: 91 Copynumber: 3.3 Consensus size: 91
8330756 TAATTATAAC
* * * *
8330766 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAAT-A-
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
8330829 -ATATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTAA
*
8330854 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATTATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
8330919 GATATATAATTTCATAAAATTC-TATA
66 GATATATAATTTCATAAAATTCTTA-A
*
8330945 TAATAAATTATCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
8331010 GATATATAATTTCATAAAATTGTTAA
66 GATATATAATTTCATAAAATTCTTAA
*
8331036 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAATTTTCTTATATGAATTTA
8331062 CTAAAATCAA
Statistics
Matches: 191, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
88 57 0.30
89 1 0.01
90 1 0.01
91 111 0.58
92 21 0.11
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
GATATATAATTTCATAAAATTCTTAA
Found at i:8331036 original size:47 final size:47
Alignment explanation
Indices: 8330798--8331042 Score: 171
Period size: 44 Copynumber: 5.4 Consensus size: 47
8330788 TTGTATAATT
* * * *
8330798 TAAAATAATTATTATTACATATAATTTAAT-A--ATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
* * * * *
8330842 TAAAATTCTTGATAATAAAT-T--TTCTTAT-ATGAATTTATACAATT--
1 TAAAATTATTAATAATAAATATAATT-TAATAATG-ATATATA-ATTTCA
*
8330886 TAAAATTATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
* * *
8330933 TAAAATT-CTATATAATAAAT-T-ATCTT-AT-ATGAATTTATACAATT--
1 TAAAATTATTA-ATAATAAATATAAT-TTAATAATG-ATATATA-ATTTCA
* *
8330977 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
*
8331024 TAAAATTGTTAATAATAAA
1 TAAAATTATTAATAATAAA
8331043 ATGTTCTTAT
Statistics
Matches: 152, Mismatches: 27, Indels: 41
0.69 0.12 0.19
Matches are distributed among these distances:
41 2 0.01
42 4 0.03
43 1 0.01
44 48 0.32
45 28 0.18
46 30 0.20
47 39 0.26
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
Found at i:8341069 original size:21 final size:19
Alignment explanation
Indices: 8341023--8341079 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 19
8341013 AATAAAAATC
8341023 TTATAATTTTATAATTTTT
1 TTATAATTTTATAATTTTT
*
8341042 TTATAATATTTATGATTTTT
1 TTATAAT-TTTATAATTTTT
8341062 TTAGTAATTTT-TAATTTT
1 TTA-TAATTTTATAATTTT
8341080 AAAAGGGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.38
20 17 0.50
21 4 0.12
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (19 bp):
TTATAATTTTATAATTTTT
Found at i:8350411 original size:146 final size:146
Alignment explanation
Indices: 8350146--8351602 Score: 1741
Period size: 146 Copynumber: 10.0 Consensus size: 146
8350136 TTTTAAGTAA
* ** * * *
8350146 AGTTTCCTTTTATTTGGTAAAAAATTAATTTTGGAGAACTGACGGTTATAATGTCACTGATCACG
1 AGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTGTCACTGATCACG
* * * * * **
8350211 TAACAACTGAGAGAGAGACTGGACCATAGATAGTCGAGAGTAAAAATACCATAATCACCCTAATA
66 TAACGACTGAGAGAGAGACTGGACGACAGATAGTCGAGAGTAAAAAGACCATAATCGCCCTAGCA
* *
8350276 AAAAGGACCAAATTAG
131 AAAAGGGCCACATTAG
* *
8350292 TGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGATATAGTGTCACTGATCACG
1 AGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTGTCACTGATCACG
* * * * *
8350357 TAACGATTGTA-AGAGAGACTAGACGACAGATAGCCTAGAGTAAAAAGATCATAATCGCCCTAGC
66 TAACGACTG-AGAGAGAGACTGGACGACAGATAGTCGAGAGTAAAAAGACCATAATCGCCCTAGC
8350421 AAAAAGGGCCACATTAG
130 AAAAAGGGCCACATTAG
* * * * *
8350438 ACTTTATTTTTATTTATTAAAAAATTAATTTTGGAGAATTGATAGTTATATTGTCATTGATCACG
1 AGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTGTCACTGATCACG
* * * * * *
8350503 TAACGAATGAGAGAGAGACTGGACCACATATAATCAAGAGTAAAAAGACCATAATCGTCCTAGCA
66 TAACGACTGAGAGAGAGACTGGACGACAGATAGTCGAGAGTAAAAAGACCATAATCGCCCTAGC-
8350568 AAAAAGGGCCACATTAG
130 AAAAAGGGCCACATTAG
* *
8350585 AGTTTCTTTTTATTTATT-AAAAATTAATTTTAGAAAATTGACAGTTATAGTGTCACTGATCACG
1 AGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTGTCACTGATCACG
* * * *
8350649 TAACGACTGAGAGAGAGAGTGGACCACAGACAGTTGAGAGTAAAAAGACCATAATCGCCCTAGCA
66 TAACGACTGAGAGAGAGACTGGACGACAGATAGTCGAGAGTAAAAAGACCATAATCGCCCTAGCA
*
8350714 AAAAGGGCCGCATTAG
131 AAAAGGGCCACATTAG
* * * *
8350730 ATTTTCTTTTTCTTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTATCATTGATCACG
1 AGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTGTCACTGATCACG
* * * * * *
8350795 TAACGATTGAGAGAGACACTAGACCG-CAGATAGTCGAGAGTAAAAATATCATAATCGCCCTATC
66 TAACGACTGAGAGAGAGACTGGA-CGACAGATAGTCGAGAGTAAAAAGACCATAATCGCCCTAGC
8350859 AAAAAGGGCCACATTAG
130 AAAAAGGGCCACATTAG
* * * * * *
8350876 AGTTACTTTTTATTTATTAAAATATTAATTATGGAGAATTGACAATTATAATGTCACTTATCACG
1 AGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTGTCACTGATCACG
* * * * * *
8350941 CAACGATTGAGAGAGAGACTTGG-CGGCAGACAGTCGAGAGTAAAAAGACCATAATCGTCCAAGC
66 TAACGACTGAGAGAGAGAC-TGGACGACAGATAGTCGAGAGTAAAAAGACCATAATCGCCCTAGC
*
8351005 AAAAAGGGTCACATTAG
130 AAAAAGGGCCACATTAG
* ** * * *
8351022 AGTTTCTTTTTGTTTGGTAAAAAATTAATTTTGGAGAACTGACGGTTATAGTGTCACTGATCATG
1 AGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTGTCACTGATCACG
* * * ** *
8351087 TAATGACTGAGAGAGAGACTAGG-CGACAGAGAGCCGAGAGTAAAAAGATTATAATCGCCGTAGC
66 TAACGACTGAGAGAGAGACT-GGACGACAGATAGTCGAGAGTAAAAAGACCATAATCGCCCTAGC
*
8351151 AAAAAGGGCCACATTAA
130 AAAAAGGGCCACATTAG
* *
8351168 AGTTTCTTTTTATTTATT-AAAAA--AA--TTAGAGAATCGACAGTTATAGTGTCACTGATCACG
1 AGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTGTCACTGATCACG
** ** * * *
8351228 TAACGACTGAGAAAGAGAGAGACTTGG-CGGTAGGGAGTCGGGAGTAGAAAGACCATAATCACCC
66 TAACGACT--G--AGAGAGAGAC-TGGACGACAGATAGTCGAGAGTAAAAAGACCATAATCGCCC
*
8351292 TAGCAAAAACGGCCACATTAG
126 TAGCAAAAAGGGCCACATTAG
*
8351313 AGTTTCTTTTTATTTATT-AAAAATTAATTTTGGAGAATTGACAGTTATAGTGTTACTGATCACG
1 AGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTGTCACTGATCACG
* * * * * * * *
8351377 TGACGACTGAGAGAGGGACTGGGCGACAGAGAGTTGAGAGTAAAAAAATCATAATCGCCTTAGCA
66 TAACGACTGAGAGAGAGACTGGACGACAGATAGTCGAGAGTAAAAAGACCATAATCGCCCTAGCA
* *
8351442 AAAAGAGCCACATTAA
131 AAAAGGGCCACATTAG
* * * * *
8351458 AGTTTCTTTTTATTTATTAAAAAAATAATTTTGAAGAATTGATAATTATAGTGTCACTGATAACG
1 AGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTGTCACTGATCACG
* ** ** * * *
8351523 TAATGACTGAGAGAGAGACTGGGTGACAGACGGTCGAGGGTAAAAAGACCATATTCGCCCTAGCG
66 TAACGACTGAGAGAGAGACTGGACGACAGATAGTCGAGAGTAAAAAGACCATAATCGCCCTAGCA
*
8351588 AAAATGGCCACATTA
131 AAAAGGGCCACATTA
8351603 CATCCCTTTC
Statistics
Matches: 1116, Mismatches: 176, Indels: 38
0.84 0.13 0.03
Matches are distributed among these distances:
141 37 0.03
143 3 0.00
144 3 0.00
145 194 0.17
146 800 0.72
147 40 0.04
149 39 0.03
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (146 bp):
AGTTTCTTTTTATTTATTAAAAAATTAATTTTGGAGAATTGACAGTTATAGTGTCACTGATCACG
TAACGACTGAGAGAGAGACTGGACGACAGATAGTCGAGAGTAAAAAGACCATAATCGCCCTAGCA
AAAAGGGCCACATTAG
Found at i:8357074 original size:91 final size:91
Alignment explanation
Indices: 8356779--8357187 Score: 409
Period size: 91 Copynumber: 4.6 Consensus size: 91
8356769 ACGACGAGTA
* *** *
8356779 TTTTTTTTTGCACTCAATTGGATACTTGAACTTTCAAAATGCATCAAAAAAATTCTCAATCTTTT
1 TTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAAGCCCTCAAAC--TT
*
8356844 TAAAAAAAATAA-AATTAAG-CCC--CTG
64 TAAAAAAAA-AACAATTAAGCCCCTACTT
* * * * * *
8356869 TTTTTTTTT-CACTCAATTAGGTACTTGATCTTTTAAGATGTA-CAAAAAGGCCCTCAAACATTT
1 TTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAAGCCCTCAAAC-TTT
8356932 ---AAAAAAACAATTAAGCCCCTACTT
65 AAAAAAAAAACAATTAAGCCCCTACTT
* *
8356956 TTTTCTTTTGTACTCAATTGGGTACTTGAAC-TTCAAAATGCATCAAAAAAGCCCTCAAAC-TTA
1 TTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAAGCCCTCAAACTTTA
8357019 AAAAAAAAACAATTAAGCCCCTACTTT
66 AAAAAAAAACAATTAAGCCCCTAC-TT
* * * *
8357046 TTTTTCTTTTGTACTAAATTGGGTACTTGAACTTT-AAAATGCATCAAAAAGGCTCTCAAACTTT
1 TTTTT-TTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAAGCCCTCAAACTTT
8357110 AAAAAAAAAAAAAACAATTAAGCCCCTAC--
65 ----AAAAAAAAAACAATTAAGCCCCTACTT
* * * * *
8357139 --TTTTTTTGCACCCAATTTGGTACTTGAACTATCAAAATACACCAAAAAA
1 TTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAA
8357188 ACCCATTGAC
Statistics
Matches: 268, Mismatches: 33, Indels: 35
0.80 0.10 0.10
Matches are distributed among these distances:
83 2 0.01
84 12 0.04
85 3 0.01
86 2 0.01
87 21 0.08
88 46 0.17
89 49 0.18
90 39 0.15
91 65 0.24
92 4 0.01
96 25 0.09
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (91 bp):
TTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAAGCCCTCAAACTTTA
AAAAAAAAACAATTAAGCCCCTACTT
Found at i:8357296 original size:15 final size:14
Alignment explanation
Indices: 8357276--8357322 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
8357266 CATGGCAAAA
8357276 AAATTATAAAAAATT
1 AAATTA-AAAAAATT
8357291 AAATTAAAAAAA-T
1 AAATTAAAAAAATT
*
8357304 AATTTTAATAAAAATT
1 AA-ATTAA-AAAAATT
8357320 AAA
1 AAA
8357323 AAATCAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
13 3 0.11
14 10 0.37
15 11 0.41
16 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
AAATTAAAAAAATT
Found at i:8357318 original size:24 final size:24
Alignment explanation
Indices: 8357291--8357354 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 24
8357281 ATAAAAAATT
*
8357291 AAATTAAAAAAATAATTTTAATAA
1 AAATTAAAAAAAAAATTTTAATAA
*
8357315 AAATTAAAAAATCAAAATTTTATTAA
1 AAATTAAAAAA--AAAATTTTAATAA
*
8357341 AAATTAGAAAAAAA
1 AAATTAAAAAAAAA
8357355 TGATAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 14 0.40
26 21 0.60
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AAATTAAAAAAAAAATTTTAATAA
Found at i:8357320 original size:29 final size:26
Alignment explanation
Indices: 8357272--8357354 Score: 80
Period size: 26 Copynumber: 3.2 Consensus size: 26
8357262 GACACATGGC
*
8357272 AAAAAAATTAT-A-AAAAATTAAATTAA
1 AAAAAAATTTTAATAAAAATTAAA--AA
8357298 AAAAATAATTTTAATAAAAATTAAAAA
1 AAAAA-AATTTTAATAAAAATTAAAAA
** * *
8357325 ATCAAAATTTTATTAAAAATTAGAAA
1 AAAAAAATTTTAATAAAAATTAAAAA
8357351 AAAA
1 AAAA
8357355 TGATAAAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
26 26 0.55
27 10 0.21
28 1 0.02
29 10 0.21
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.29
Consensus pattern (26 bp):
AAAAAAATTTTAATAAAAATTAAAAA
Found at i:8357379 original size:9 final size:10
Alignment explanation
Indices: 8357338--8357413 Score: 59
Period size: 10 Copynumber: 7.6 Consensus size: 10
8357328 AAAATTTTAT
8357338 TAAAAATTAGA
1 TAAAAATT-GA
*
8357349 -AAAAAATGA
1 TAAAAATTGA
8357358 TAAAAA-TGA
1 TAAAAATTGA
8357367 TAAAAATTGTAA
1 TAAAAATTG--A
* *
8357379 AAAAAATTTA
1 TAAAAATTGA
8357389 TAAAAATTG-
1 TAAAAATTGA
* *
8357398 TAAAATTTTA
1 TAAAAATTGA
8357408 TAAAAA
1 TAAAAA
8357414 CCATAAAATG
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
9 18 0.35
10 26 0.50
12 8 0.15
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (10 bp):
TAAAAATTGA
Found at i:8357675 original size:10 final size:9
Alignment explanation
Indices: 8357662--8357778 Score: 78
Period size: 9 Copynumber: 12.6 Consensus size: 9
8357652 TTTTTACGAC
8357662 TTTATAAAAT
1 TTTAT-AAAT
*
8357672 TTTATAATT
1 TTTATAAAT
* *
8357681 TTTCTATAT
1 TTTATAAAT
*
8357690 TTCTATATAT
1 TT-TATAAAT
*
8357700 TTTATAATT
1 TTTATAAAT
8357709 TTTA-ATAAT
1 TTTATA-AAT
8357718 TTT-TAAAT
1 TTTATAAAT
8357726 ATTT-TAAATT
1 -TTTATAAA-T
8357736 TTTATTAAAAT
1 TTTA-T-AAAT
*
8357747 TTAATAAAT
1 TTTATAAAT
*
8357756 TTAATAAAT
1 TTTATAAAT
*
8357765 TTAATAAAT
1 TTTATAAAT
8357774 TTTAT
1 TTTAT
8357779 TGATTTTTAT
Statistics
Matches: 89, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
8 4 0.04
9 62 0.70
10 15 0.17
11 5 0.06
12 3 0.03
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (9 bp):
TTTATAAAT
Found at i:8357701 original size:28 final size:28
Alignment explanation
Indices: 8357666--8357739 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 28
8357656 TACGACTTTA
*
8357666 TAAA-ATTTTATAATTTTT-CTATATTTC
1 TAAATATTTTATAATTTTTAATA-ATTTC
* *
8357693 TATATATTTTATAATTTTTAATAATTTT
1 TAAATATTTTATAATTTTTAATAATTTC
8357721 TAAATATTTTA-AATTTTTA
1 TAAATATTTTATAATTTTTA
8357740 TTAAAATTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 11 0.27
28 28 0.68
29 2 0.05
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (28 bp):
TAAATATTTTATAATTTTTAATAATTTC
Found at i:8357711 original size:9 final size:9
Alignment explanation
Indices: 8357601--8357802 Score: 69
Period size: 9 Copynumber: 22.0 Consensus size: 9
8357591 TCTTTTTACG
8357601 ATAA-TTTT
1 ATAATTTTT
8357609 ATAATTCTTTT
1 ATAA-T-TTTT
8357620 ATGAA-TTTT
1 AT-AATTTTT
*
8357629 ATATTTCTTT
1 ATAATT-TTT
* *
8357639 ACATTTTTT
1 ATAATTTTT
*
8357648 ATATTTTTT
1 ATAATTTTT
** *
8357657 ACGA-CTTT
1 ATAATTTTT
*
8357665 ATAAAATTTT
1 AT-AATTTTT
8357675 ATAATTTTT
1 ATAATTTTT
* *
8357684 CTATATTTCT
1 ATA-ATTTTT
8357694 AT-ATATTTT
1 ATAAT-TTTT
8357703 ATAATTTTT
1 ATAATTTTT
8357712 AATAATTTTT
1 -ATAATTTTT
8357722 A-AATATTTT
1 ATAAT-TTTT
8357731 A-AATTTTT
1 ATAATTTTT
* *
8357739 ATTAAAATTTA
1 A-T-AATTTTT
* *
8357750 ATAAATTTA
1 ATAATTTTT
* *
8357759 ATAAATTTA
1 ATAATTTTT
*
8357768 ATAAATTTT
1 ATAATTTTT
*
8357777 ATTGATTTTT
1 A-TAATTTTT
8357787 AT--TTTTT
1 ATAATTTTT
*
8357794 ATCATTTTT
1 ATAATTTTT
8357803 TACTACATGT
Statistics
Matches: 155, Mismatches: 20, Indels: 37
0.73 0.09 0.17
Matches are distributed among these distances:
7 7 0.05
8 19 0.12
9 77 0.50
10 38 0.25
11 12 0.08
12 2 0.01
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (9 bp):
ATAATTTTT
Found at i:8357719 original size:46 final size:44
Alignment explanation
Indices: 8357604--8357720 Score: 103
Period size: 46 Copynumber: 2.5 Consensus size: 44
8357594 TTTTACGATA
* *
8357604 ATTTTATAATTCTTTTATGAATTTTATATTTCTTTACATTTTTTAT
1 ATTTTATAATT-TTTAAT-AATTTTATATTTCTTTACATTTTATAT
* * *
8357650 ATTTTTTACGACTTTATAA-AATTTTATAATTT-TTCTATATTTCTATAT
1 ATTTTATA--A-TTTTTAATAATTTTAT-ATTTCTT-TACATTT-TATAT
8357698 ATTTTATAATTTTTAATAATTTT
1 ATTTTATAATTTTTAATAATTTT
8357721 TAAATATTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
45 6 0.11
46 24 0.42
47 10 0.18
48 15 0.26
49 2 0.04
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (44 bp):
ATTTTATAATTTTTAATAATTTTATATTTCTTTACATTTTATAT
Found at i:8357749 original size:27 final size:28
Alignment explanation
Indices: 8357666--8357777 Score: 79
Period size: 28 Copynumber: 4.1 Consensus size: 28
8357656 TACGACTTTA
* * *
8357666 TAAA-ATTTTATAATTTTT-CTATATTT
1 TAAATATTTTATAATTTTTAATAAAATT
* **
8357692 CTATATATTTTATAATTTTTAATAATTTT
1 -TAAATATTTTATAATTTTTAATAAAATT
*
8357721 TAAATATTTTA-AATTTTTATTAAAATT
1 TAAATATTTTATAATTTTTAATAAAATT
* * * *
8357748 TAATAAATTTAATAA-ATTTAATAAATTT
1 TAA-ATATTTTATAATTTTTAATAAAATT
8357776 TA
1 TA
8357778 TTGATTTTTA
Statistics
Matches: 68, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
27 19 0.28
28 42 0.62
29 7 0.10
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (28 bp):
TAAATATTTTATAATTTTTAATAAAATT
Found at i:8357757 original size:38 final size:38
Alignment explanation
Indices: 8357662--8357753 Score: 107
Period size: 38 Copynumber: 2.4 Consensus size: 38
8357652 TTTTTACGAC
* ** *
8357662 TTTATAAAATTTTATAATTTTTCTATATTTCTATATAT
1 TTTATAAAATTTAATAATTTTTAAATATTTCTAAATAT
**
8357700 TTTATAATTTTTAATAATTTTTAAATATTT-TAAAT-T
1 TTTATAAAATTTAATAATTTTTAAATATTTCTAAATAT
8357736 TTTATTAAAATTTAATAA
1 TTTA-TAAAATTTAATAA
8357754 ATTTAATAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
36 5 0.11
37 15 0.33
38 25 0.56
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (38 bp):
TTTATAAAATTTAATAATTTTTAAATATTTCTAAATAT
Found at i:8358216 original size:24 final size:26
Alignment explanation
Indices: 8358157--8358218 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
8358147 TTATTAATAA
*
8358157 TATAATTTTTTATGTTAAAAAAATATT
1 TATAA-TTATTATGTTAAAAAAATATT
* *
8358184 TATATTTATTATGTTAACAAAAT-TT
1 TATAATTATTATGTTAAAAAAATATT
8358209 TA-AATTATTA
1 TATAATTATTA
8358219 ATTTGAAGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 7 0.23
25 4 0.13
26 16 0.52
27 4 0.13
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (26 bp):
TATAATTATTATGTTAAAAAAATATT
Found at i:8358243 original size:6 final size:6
Alignment explanation
Indices: 8358232--8358257 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8358222 TGAAGCTTAA
8358232 TTAATT TTAATT TTAATT TTAATT TT
1 TTAATT TTAATT TTAATT TTAATT TT
8358258 TTGTGAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTAATT
Found at i:8359616 original size:35 final size:35
Alignment explanation
Indices: 8359577--8359646 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
8359567 TCGATCGAAC
8359577 CGATCTAATTCAGTTAATCGACCAGTGCCTAAATT
1 CGATCTAATTCAGTTAATCGACCAGTGCCTAAATT
8359612 CGATCTAATTCAGTTAATCGACCAGTGCCTAAATT
1 CGATCTAATTCAGTTAATCGACCAGTGCCTAAATT
8359647 TAGTTCAGTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (35 bp):
CGATCTAATTCAGTTAATCGACCAGTGCCTAAATT
Found at i:8359774 original size:19 final size:21
Alignment explanation
Indices: 8359752--8359792 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8359742 ATAATATATA
8359752 TTATA-TA-TAATATATTTTT
1 TTATATTAGTAATATATTTTT
8359771 TTATATTAGTAATATATTTTT
1 TTATATTAGTAATATATTTTT
8359792 T
1 T
8359793 CAACTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 2 0.10
21 13 0.65
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TTATATTAGTAATATATTTTT
Done.