Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 30 of 208
Found at i:8617285 original size:19 final size:20
Alignment explanation
Indices: 8617247--8617285 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8617237 AATTTCTTTG
8617247 GATCTTGCCAAATCCTTGAT
1 GATCTTGCCAAATCCTTGAT
8617267 GATCTTGCCAAAT-CTTGAT
1 GATCTTGCCAAATCCTTGAT
8617286 ACCAATCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (20 bp):
GATCTTGCCAAATCCTTGAT
Found at i:8618110 original size:21 final size:21
Alignment explanation
Indices: 8618086--8618132 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8618076 AATTTTTTTT
* *
8618086 ATGAGCAGTTTATCTTCAATG
1 ATGAGCAGTTTATCTCCAACG
**
8618107 ATGAGTGGTTTATCTCCAACG
1 ATGAGCAGTTTATCTCCAACG
8618128 ATGAG
1 ATGAG
8618133 TGGTTTTATC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (21 bp):
ATGAGCAGTTTATCTCCAACG
Found at i:8618149 original size:22 final size:21
Alignment explanation
Indices: 8618093--8618138 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
8618083 TTTATGAGCA
* *
8618093 GTTTATCTTCAATGATGAGTG
1 GTTTATCTCCAACGATGAGTG
8618114 GTTTATCTCCAACGATGAGTG
1 GTTTATCTCCAACGATGAGTG
8618135 GTTT
1 GTTT
8618139 TATCCACAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.24, T:0.41
Consensus pattern (21 bp):
GTTTATCTCCAACGATGAGTG
Found at i:8619651 original size:48 final size:48
Alignment explanation
Indices: 8619580--8619674 Score: 163
Period size: 48 Copynumber: 2.0 Consensus size: 48
8619570 TTCTTTGCTC
*
8619580 AAAAACGCCTAAGTCAGCCTAACTTGCAGTAATAAAGGATTCAACAGT
1 AAAAACGCCTAAGTCAGCCTAACTTGCAATAATAAAGGATTCAACAGT
* *
8619628 AAAAACGCCTAAGTCATCTTAACTTGCAATAATAAAGGATTCAACAG
1 AAAAACGCCTAAGTCAGCCTAACTTGCAATAATAAAGGATTCAACAG
8619675 AATTCCCTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (48 bp):
AAAAACGCCTAAGTCAGCCTAACTTGCAATAATAAAGGATTCAACAGT
Found at i:8620013 original size:35 final size:36
Alignment explanation
Indices: 8619973--8620044 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
8619963 TCTAGGATCA
8619973 CATATC-TCAAAAGATCACCTTCCATATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
* * *
8620008 CATATCTTCAAAAGATTACTTTCCTTATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
8620044 C
1 C
8620045 TCCGGAGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 6 0.18
36 27 0.82
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.33
Consensus pattern (36 bp):
CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
Found at i:8624841 original size:48 final size:48
Alignment explanation
Indices: 8624770--8624864 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
8624760 TTCTTTGCTC
* **
8624770 AAAAACGCCTAAGTCAGCCTAACTTGCAGTAATAAAGGATTCAACAGT
1 AAAAACGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAGT
* *
8624818 AAAAATGCCTAAGTCAGCTTAACTCGCAACAATAAAGGATTCAACAG
1 AAAAACGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAG
8624865 AATTCCCTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (48 bp):
AAAAACGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAGT
Found at i:8625202 original size:35 final size:36
Alignment explanation
Indices: 8625163--8625234 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
8625153 TCTAGGATCA
8625163 CATATC-TCAAAAGATCACCTTCCATATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
* * *
8625198 CATATCTTCAAAAGATTACTTTCCTTATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
8625234 C
1 C
8625235 TCCGGAGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 6 0.18
36 27 0.82
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.33
Consensus pattern (36 bp):
CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
Found at i:8626059 original size:24 final size:23
Alignment explanation
Indices: 8626028--8626072 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
8626018 TATTCACACA
8626028 TATTCTTA-CTTAATTTCAAATGT
1 TATTCTTACCTTAATTT-AAATGT
8626051 TATTACTTACCTTAATTTAAAT
1 TATT-CTTACCTTAATTTAAAT
8626073 ATCCCATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 4 0.20
24 8 0.40
25 8 0.40
ACGTcount: A:0.33, C:0.13, G:0.02, T:0.51
Consensus pattern (23 bp):
TATTCTTACCTTAATTTAAATGT
Found at i:8626365 original size:22 final size:24
Alignment explanation
Indices: 8626322--8626365 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
8626312 TAACTAAGCT
8626322 TACTTACTTTTCTAGCTTAATTCA
1 TACTTACTTTTCTAGCTTAATTCA
8626346 TACTT-CTTTTCTA-CTTAATT
1 TACTTACTTTTCTAGCTTAATT
8626366 TCTTGCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.23, C:0.20, G:0.02, T:0.55
Consensus pattern (24 bp):
TACTTACTTTTCTAGCTTAATTCA
Found at i:8627084 original size:3 final size:3
Alignment explanation
Indices: 8627076--8627162 Score: 140
Period size: 3 Copynumber: 28.7 Consensus size: 3
8627066 AACTTATTTC
8627076 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
*
8627125 ATA ATA ATA ATA ATA ATA ATA ATA ACA ATTA AT- ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA AT
8627163 TTATTATTTC
Statistics
Matches: 79, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
2 2 0.03
3 72 0.91
4 5 0.06
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:8629461 original size:72 final size:72
Alignment explanation
Indices: 8629315--8629549 Score: 253
Period size: 72 Copynumber: 3.3 Consensus size: 72
8629305 CCCTAGCCAC
* * *
8629315 TAAAACCGACAAATGAGTGTG-TCAGCACTGGTCGGTATAACCGAAAAATAAAT-ATGCCCTGTG
1 TAAAACTGACAAATGAGTGTGCCCAGCACTGGTCGGTATAACCGAAAAATAAATGA-GCCCTGCG
*
8629378 CTAGTTAG
65 CTAGTCAG
* * * *
8629386 TAAAACTGAAAAATGAGTGTGCCCAGAACTGGTCGGTATAACC-AAAAAGTAAATGCGCCTTGCG
1 TAAAACTGACAAATGAGTGTGCCCAGCACTGGTCGGTATAACCGAAAAA-TAAATGAGCCCTGCG
* * *
8629450 TTGGTCGG
65 CTAGTCAG
* *
8629458 TAAAACAT-ACAAATGAGTGTGCCTAGCACTGGCCGGTATAACCGAAAAATAAATGAGCCCTGCG
1 TAAAAC-TGACAAATGAGTGTGCCCAGCACTGGTCGGTATAACCGAAAAATAAATGAGCCCTGCG
* *
8629522 CTGGCCAG
65 CTAGTCAG
* **
8629530 TGAAACCAACAAATGAGTGT
1 TAAAACTGACAAATGAGTGT
8629550 TCATTCATTT
Statistics
Matches: 136, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
71 24 0.18
72 106 0.78
73 6 0.04
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (72 bp):
TAAAACTGACAAATGAGTGTGCCCAGCACTGGTCGGTATAACCGAAAAATAAATGAGCCCTGCGC
TAGTCAG
Found at i:8631343 original size:22 final size:23
Alignment explanation
Indices: 8631264--8631356 Score: 100
Period size: 23 Copynumber: 4.1 Consensus size: 23
8631254 AAATGTCTAC
* *
8631264 TTGGACAACACTTAAAACATGCT
1 TTGGACAACATTTAAAACATACT
* *
8631287 TTGGATGAA-ATTTAAAACATATT
1 TTGGA-CAACATTTAAAACATACT
*
8631310 TTGGACAACATTTAAAACTTACT
1 TTGGACAACATTTAAAACATACT
* *
8631333 TT-GACAGCATTTGAAACATACT
1 TTGGACAACATTTAAAACATACT
8631355 TT
1 TT
8631357 TGCTGGCACT
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
22 21 0.36
23 35 0.60
24 2 0.03
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (23 bp):
TTGGACAACATTTAAAACATACT
Found at i:8637037 original size:3 final size:3
Alignment explanation
Indices: 8637029--8637057 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8637019 TATTGCACCC
8637029 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8637058 TTGTTTATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8637178 original size:7 final size:6
Alignment explanation
Indices: 8637143--8637177 Score: 61
Period size: 6 Copynumber: 5.7 Consensus size: 6
8637133 TGTGTACATA
8637143 TTTTAT TTTTAT TTTTAT TTTTATT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT TTTT
8637178 TTTGTGTGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:8637323 original size:22 final size:21
Alignment explanation
Indices: 8637290--8637333 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
8637280 ATTCTATACC
*
8637290 TTTTATATATACATATATTTA
1 TTTTATAAATACATATATTTA
*
8637311 TTTTCATAAATACATATTTTTA
1 TTTT-ATAAATACATATATTTA
8637333 T
1 T
8637334 ATTTTTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTTATAAATACATATATTTA
Found at i:8641663 original size:22 final size:22
Alignment explanation
Indices: 8641635--8641677 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
8641625 TTTATTGTTC
8641635 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTG
8641657 AAACATGAGAGCTTAGTACGT
1 AAACATGAGAGCTTAGTACGT
8641678 TATTATTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTG
Found at i:8641880 original size:6 final size:6
Alignment explanation
Indices: 8641872--8641920 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
8641862 AATACACCCT
* * *
8641872 TCACCT TCACCT TCACCT TCACCA TCACCA TCACCA TCACCA TCACCA
1 TCACCA TCACCA TCACCA TCACCA TCACCA TCACCA TCACCA TCACCA
8641920 T
1 T
8641921 GACTTTACAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.27, C:0.49, G:0.00, T:0.24
Consensus pattern (6 bp):
TCACCA
Found at i:8644317 original size:24 final size:25
Alignment explanation
Indices: 8644265--8644325 Score: 97
Period size: 24 Copynumber: 2.5 Consensus size: 25
8644255 GCTGAAGCTT
* *
8644265 TAGTTGCAATTTAAGAGGTATTTTA
1 TAGTTGCAATTCAAAAGGTATTTTA
8644290 TAGTTGCAATTCAAAAGGT-TTTTA
1 TAGTTGCAATTCAAAAGGTATTTTA
8644314 TAGTTGCAATTC
1 TAGTTGCAATTC
8644326 TGGTTTGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 17 0.50
25 17 0.50
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (25 bp):
TAGTTGCAATTCAAAAGGTATTTTA
Found at i:8644563 original size:22 final size:22
Alignment explanation
Indices: 8644533--8644574 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
8644523 ATGGCTTGCG
*
8644533 TTTGGATGTGTTCTTATTTAAA
1 TTTGAATGTGTTCTTATTTAAA
8644555 TTTGAATGTGTTCTTATTTA
1 TTTGAATGTGTTCTTATTTA
8644575 GTGCAGCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.17, T:0.57
Consensus pattern (22 bp):
TTTGAATGTGTTCTTATTTAAA
Found at i:8645967 original size:26 final size:26
Alignment explanation
Indices: 8645907--8645958 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8645897 TTTCTACCTA
8645907 CAGGTTTTTGTCATTGATATTAGCTG
1 CAGGTTTTTGTCATTGATATTAGCTG
8645933 CAGGTTTTTGTCATTGATATTAGCTG
1 CAGGTTTTTGTCATTGATATTAGCTG
8645959 TAGTATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.12, G:0.23, T:0.46
Consensus pattern (26 bp):
CAGGTTTTTGTCATTGATATTAGCTG
Found at i:8646059 original size:12 final size:12
Alignment explanation
Indices: 8646042--8646075 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
8646032 GTTCGTTCTT
8646042 TTCTTTTGCTCG
1 TTCTTTTGCTCG
8646054 TTCTTTTGCTCG
1 TTCTTTTGCTCG
8646066 TTCTTTTGCT
1 TTCTTTTGCT
8646076 TAAAATGCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.24, G:0.15, T:0.62
Consensus pattern (12 bp):
TTCTTTTGCTCG
Found at i:8646231 original size:25 final size:25
Alignment explanation
Indices: 8646203--8646264 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
8646193 GCTGAAGCTC
*
8646203 TAGTTGCAATTCAAGAGGTGTTTTA
1 TAGTTGCAATTCAAGAGGTATTTTA
8646228 TAGTTGCAATTCAAGAGGTATTTTA
1 TAGTTGCAATTCAAGAGGTATTTTA
8646253 TAGTTGCAATTC
1 TAGTTGCAATTC
8646265 CAGTAAATTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (25 bp):
TAGTTGCAATTCAAGAGGTATTTTA
Found at i:8646432 original size:18 final size:19
Alignment explanation
Indices: 8646409--8646449 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
8646399 TAATGGACTT
8646409 TATAGGATAA-TTTATTGG
1 TATAGGATAATTTTATTGG
8646427 TATAGGATAATTTTTATTGG
1 TATAGGATAA-TTTTATTGG
8646447 TAT
1 TAT
8646450 TTTTATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.48
20 11 0.52
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.49
Consensus pattern (19 bp):
TATAGGATAATTTTATTGG
Found at i:8650505 original size:32 final size:32
Alignment explanation
Indices: 8650450--8650515 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
8650440 NNNNNNGCAG
*
8650450 TTTAATAATAATAAAGTAGATTATAAATTATA
1 TTTAATAATAATAAAGTAAATTATAAATTATA
* **
8650482 TTTAATAATAAT-TAGTTAAATTATATTTTATA
1 TTTAATAATAATAAAG-TAAATTATAAATTATA
8650514 TT
1 TT
8650516 ATTATATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 2 0.07
32 27 0.93
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (32 bp):
TTTAATAATAATAAAGTAAATTATAAATTATA
Found at i:8650610 original size:26 final size:28
Alignment explanation
Indices: 8650556--8650619 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
8650546 TAAGAATAAG
* * *
8650556 AATTTTATTAAATTATATATTATTATTA
1 AATTATATTTAATAATATATTATTATTA
8650584 AATTATATTTAATAATA-ATTATT-TTA
1 AATTATATTTAATAATATATTATTATTA
8650610 AATTATATTT
1 AATTATATTT
8650620 TATAGTGTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.39
27 6 0.18
28 14 0.42
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
AATTATATTTAATAATATATTATTATTA
Found at i:8650687 original size:110 final size:105
Alignment explanation
Indices: 8650469--8650676 Score: 292
Period size: 110 Copynumber: 1.9 Consensus size: 105
8650459 AATAAAGTAG
*
8650469 ATTATAAATTATATTTAATAATAATTAGTTAAATTATATTTTATATTATTATATATTATGATTTT
1 ATTATAAATTATATTTAATAATAATTAGTTAAATTATATTTTATAGTATTATATATTATGATTTT
8650534 AGTAAATTCATATAAGAATAAGAATTTTATTAAATTATATATT
66 AGTAAATTCATAT---AATAAGAATTTTATTAAATTATATATT
* *
8650577 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTGTTATATATTATGATT
1 ATTA-TAAATTATATTTAATAATAATTA-GTTAAATTATATTTTATAGTATTATATATTATGA--
*
8650642 TTATTAGTAAATTCATAT-TTAAGAATATTTATTAA
62 TT-TTAGTAAATTCATATAATAAGAAT-TTTATTAA
8650677 TCATTTTATT
Statistics
Matches: 90, Mismatches: 4, Indels: 10
0.87 0.04 0.10
Matches are distributed among these distances:
108 4 0.04
109 30 0.33
110 39 0.43
112 2 0.02
113 15 0.17
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (105 bp):
ATTATAAATTATATTTAATAATAATTAGTTAAATTATATTTTATAGTATTATATATTATGATTTT
AGTAAATTCATATAATAAGAATTTTATTAAATTATATATT
Found at i:8650906 original size:39 final size:41
Alignment explanation
Indices: 8650861--8650966 Score: 135
Period size: 44 Copynumber: 2.5 Consensus size: 41
8650851 TTTCCTTATG
* *
8650861 CTATTACACCTCTATTCCATTCAACCAAACACAAGAA-TAC
1 CTATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTAC
8650901 C-ATTACGCCTCTATTCCATTACATTCAACCAAACAAAAGAATTAC
1 CTATTACGCCTCTATT-C----CATTCAACCAAACAAAAGAATTAC
8650946 CTATTACGCCTCTATTCCATT
1 CTATTACGCCTCTATTCCATT
8650967 ACGCCTCTAT
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
39 13 0.23
40 2 0.04
41 4 0.07
44 19 0.33
45 5 0.09
46 14 0.25
ACGTcount: A:0.36, C:0.31, G:0.04, T:0.29
Consensus pattern (41 bp):
CTATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTAC
Found at i:8650941 original size:44 final size:46
Alignment explanation
Indices: 8650878--8650968 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
8650868 ACCTCTATTC
*
8650878 CATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
8650922 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
8650968 C
1 C
8650969 GCCTCTATTC
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 19 0.43
45 4 0.09
46 21 0.48
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.26
Consensus pattern (46 bp):
CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
Found at i:8650969 original size:16 final size:16
Alignment explanation
Indices: 8650948--8650984 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
8650938 AGAATTACCT
8650948 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
8650964 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
8650980 ATTAC
1 ATTAC
8650985 AGCGAACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.22, C:0.35, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:8651661 original size:18 final size:18
Alignment explanation
Indices: 8651640--8651675 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8651630 CTATTTTTAA
8651640 TTATAAAAATACAAAAAC
1 TTATAAAAATACAAAAAC
* *
8651658 TTATAAAATTTCAAAAAC
1 TTATAAAAATACAAAAAC
8651676 AATACAAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (18 bp):
TTATAAAAATACAAAAAC
Found at i:8657184 original size:21 final size:22
Alignment explanation
Indices: 8657160--8657202 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8657150 TCATTTCAAT
*
8657160 ACCTT-ATAAAGCATATCAAAA
1 ACCTTGATAAACCATATCAAAA
*
8657181 ACCTTGTTAAACCATATCAAAA
1 ACCTTGATAAACCATATCAAAA
8657203 TCTTACCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.26
Consensus pattern (22 bp):
ACCTTGATAAACCATATCAAAA
Found at i:8657977 original size:23 final size:23
Alignment explanation
Indices: 8657933--8658035 Score: 86
Period size: 23 Copynumber: 4.4 Consensus size: 23
8657923 AAACTCCTCC
*
8657933 TGAGCTGATAAACAGTAGGCTCTAT
1 TGAGCTG--AAACAGTAAGCTCTAT
*
8657958 TGAGCTGAAACGGTAAGCTCTGA-
1 TGAGCTGAAACAGTAAGCTCT-AT
*
8657981 CGAGCTG-AACAGTAAGCTC-AT
1 TGAGCTGAAACAGTAAGCTCTAT
** * *
8658002 ACAAGCTAAAACAGTAAGCTCTAA
1 -TGAGCTGAAACAGTAAGCTCTAT
8658026 TGAGCTGAAA
1 TGAGCTGAAA
8658036 ATAGTAGGCT
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
20 1 0.02
22 16 0.25
23 37 0.59
24 2 0.03
25 7 0.11
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.21
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAT
Found at i:8658344 original size:67 final size:67
Alignment explanation
Indices: 8658260--8658632 Score: 566
Period size: 67 Copynumber: 5.6 Consensus size: 67
8658250 ATATATATAT
* * *
8658260 ATATAATCTATTCAATTAAATACATACATTTAAATACTCAATCCGCATACCTTCTCAAATCACAT
1 ATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCAAATCACAT
*
8658325 AT
66 AC
* * *
8658327 ATATAATCGATTTAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCAAATCATAT
1 ATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCAAATCACAT
8658392 AC
66 AC
* *
8658394 ATATAATCAATTCAATTAAATACATACATTTAATTACTCAATTCGCATACTTTCTCAAATTACAT
1 ATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCAAATCACAT
8658459 AC
66 AC
* * *
8658461 ATATAATCGATTTAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCAAATCATAT
1 ATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCAAATCACAT
8658526 AC
66 AC
** * * *
8658528 ATACCATCAATTTAATTAAATACATACATTTAATTACTCAATTCGCATACCTTCTCAAATCACAT
1 ATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCAAATCACAT
*
8658593 TC
66 AC
* *
8658595 ATATAATCAATTCAATTAAACATATACATTTAAATACT
1 ATATAATCAATTCAATTAAATACATACATTTAAATACT
8658633 ATTGCAATTG
Statistics
Matches: 277, Mismatches: 29, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 277 1.00
ACGTcount: A:0.42, C:0.20, G:0.02, T:0.36
Consensus pattern (67 bp):
ATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCAAATCACAT
AC
Found at i:8658466 original size:134 final size:134
Alignment explanation
Indices: 8658254--8658632 Score: 623
Period size: 134 Copynumber: 2.8 Consensus size: 134
8658244 ATATATATAT
* * * *
8658254 ATATATATATAATCTATTCAATTAAATACATACATTTAAATACTCAATCCGCATACCTTCTCAAA
1 ATATACATATAATCAATTCAATTAAATACATACATTTAATTACTCAATTCGCATACCTTCTCAAA
*
8658319 TCACATATATATAATCGATTTAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCA
66 TCACATACATATAATCGATTTAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCA
8658384 AATC
131 AATC
*
8658388 ATATACATATAATCAATTCAATTAAATACATACATTTAATTACTCAATTCGCATACTTTCTCAAA
1 ATATACATATAATCAATTCAATTAAATACATACATTTAATTACTCAATTCGCATACCTTCTCAAA
*
8658453 TTACATACATATAATCGATTTAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCA
66 TCACATACATATAATCGATTTAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCA
8658518 AATC
131 AATC
** *
8658522 ATATACATACCATCAATTTAATTAAATACATACATTTAATTACTCAATTCGCATACCTTCTCAAA
1 ATATACATATAATCAATTCAATTAAATACATACATTTAATTACTCAATTCGCATACCTTCTCAAA
* * * * *
8658587 TCACATTCATATAATCAATTCAATTAAACATATACATTTAAATACT
66 TCACATACATATAATCGATTTAATTAAATACATACATTTAAATACT
8658633 ATTGCAATTG
Statistics
Matches: 228, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
134 228 1.00
ACGTcount: A:0.42, C:0.19, G:0.02, T:0.37
Consensus pattern (134 bp):
ATATACATATAATCAATTCAATTAAATACATACATTTAATTACTCAATTCGCATACCTTCTCAAA
TCACATACATATAATCGATTTAATTAAATACATACATTTAAATACTCAATTCGCATACTTTCTCA
AATC
Found at i:8661825 original size:15 final size:15
Alignment explanation
Indices: 8661780--8661827 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 15
8661770 TATTAATCTT
8661780 TTAATAATAAATATTTA
1 TTAATAATAAATA--TA
*
8661797 TTACAATTATAAATATA
1 TT--AATAATAAATATA
8661814 TTAATAATAAATAT
1 TTAATAATAAATAT
8661828 CTTGTAGTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
15 11 0.41
17 6 0.22
19 10 0.37
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
TTAATAATAAATATA
Found at i:8663882 original size:2 final size:2
Alignment explanation
Indices: 8663870--8663906 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
8663860 ATTTAAAGGA
*
8663870 AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8663907 GTAAAAAAGC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:8664576 original size:18 final size:18
Alignment explanation
Indices: 8664548--8664582 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
8664538 CAGTAACAGG
8664548 AGAAGTGAAG-AAGAAAA
1 AGAAGTGAAGAAAGAAAA
8664565 AGAAGATGAAGAAAGAAA
1 AGAAG-TGAAGAAAGAAA
8664583 GGGAAAGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.66, C:0.00, G:0.29, T:0.06
Consensus pattern (18 bp):
AGAAGTGAAGAAAGAAAA
Found at i:8665824 original size:20 final size:20
Alignment explanation
Indices: 8665799--8665841 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
8665789 CAATGTGGCA
8665799 AGTTAAC-AGCCCACATCAGC
1 AGTTAACTAG-CCACATCAGC
*
8665819 AGTTAACTTGCCACATCAGC
1 AGTTAACTAGCCACATCAGC
8665839 AGT
1 AGT
8665842 CCCATTAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (20 bp):
AGTTAACTAGCCACATCAGC
Found at i:8668484 original size:23 final size:23
Alignment explanation
Indices: 8668440--8668484 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
8668430 AATTTGAAAA
* * * *
8668440 TCGAATAATTCATTTGAGTTAAT
1 TCGAATAACTCAATTCAATTAAT
8668463 TCGAATAACTCAATTCAATTAA
1 TCGAATAACTCAATTCAATTAA
8668485 CTCAAATTCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
TCGAATAACTCAATTCAATTAAT
Found at i:8670267 original size:2 final size:2
Alignment explanation
Indices: 8670260--8670297 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
8670250 ATAATTAAGT
*
8670260 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8670298 GTAGGGCAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8678924 original size:21 final size:20
Alignment explanation
Indices: 8678898--8678967 Score: 52
Period size: 22 Copynumber: 3.3 Consensus size: 20
8678888 TTTTAAGTAG
8678898 TTTTAATGTTATTTAATTATT
1 TTTTAAT-TTATTTAATTATT
*
8678919 TTTTAAATTCTA-TTAACTATGT
1 TTTT-AATT-TATTTAATTAT-T
** *
8678941 TTTTAAACATCTTTAATTATT
1 TTTT-AATTTATTTAATTATT
8678962 TTTTAA
1 TTTTAA
8678968 AAAATTAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
20 2 0.05
21 18 0.45
22 20 0.50
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (20 bp):
TTTTAATTTATTTAATTATT
Found at i:8678968 original size:21 final size:20
Alignment explanation
Indices: 8678909--8678969 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 20
8678899 TTTAATGTTA
*
8678909 TTTAATTATTTTTTAAATTC
1 TTTAATTATTTTTTAAAATC
*
8678929 TATTAACTATGTTTTTAAACATC
1 T-TTAATTAT-TTTTTAAA-ATC
8678952 TTTAATTATTTTTTAAAA
1 TTTAATTATTTTTTAAAA
8678970 AATTAATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 2 0.06
21 15 0.43
22 15 0.43
23 3 0.09
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (20 bp):
TTTAATTATTTTTTAAAATC
Found at i:8679947 original size:21 final size:20
Alignment explanation
Indices: 8679910--8679951 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
8679900 AGAGATGACT
*
8679910 TATAATTTAAAGTTATTTATA
1 TATAATATAAAGTTA-TTATA
8679931 TATAATATAAA-TATATTATA
1 TATAATATAAAGT-TATTATA
8679951 T
1 T
8679952 GTTTTATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TATAATATAAAGTTATTATA
Found at i:8680961 original size:18 final size:20
Alignment explanation
Indices: 8680920--8680964 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
8680910 ATGCCATTGG
8680920 AAAGAAATTTGAACAAAAATC
1 AAAG-AATTTGAACAAAAATC
*
8680941 AAAGAATTTG-ATAAAAA-C
1 AAAGAATTTGAACAAAAATC
8680959 AAAGAA
1 AAAGAA
8680965 AACGCTTGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 7 0.30
19 6 0.26
20 6 0.26
21 4 0.17
ACGTcount: A:0.64, C:0.07, G:0.11, T:0.18
Consensus pattern (20 bp):
AAAGAATTTGAACAAAAATC
Found at i:8692646 original size:17 final size:19
Alignment explanation
Indices: 8692610--8692646 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
8692600 TATCTTTTAT
*
8692610 GAAAAATTGTAATGTTGTG
1 GAAAAATTGTAATCTTGTG
8692629 GAAAAA-TGTAA-CTTGTG
1 GAAAAATTGTAATCTTGTG
8692646 G
1 G
8692647 GACAAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 5 0.29
19 6 0.35
ACGTcount: A:0.38, C:0.03, G:0.27, T:0.32
Consensus pattern (19 bp):
GAAAAATTGTAATCTTGTG
Found at i:8694733 original size:49 final size:48
Alignment explanation
Indices: 8694663--8694762 Score: 155
Period size: 49 Copynumber: 2.1 Consensus size: 48
8694653 AAAAAAATAT
* * *
8694663 AATGTTATTGATTCAAGTTAATTTTAATAAATATAGTTTTTGAATAAAA
1 AATGTTATTAATTCAAGTTAATTTTAATAAATATA-TTTTTAAACAAAA
*
8694712 AATGTTATTAATTCAATTTAATTTTAATAAATATATTTTTAAACAAAA
1 AATGTTATTAATTCAAGTTAATTTTAATAAATATATTTTTAAACAAAA
8694760 AAT
1 AAT
8694763 AATTTAAGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 14 0.30
49 33 0.70
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (48 bp):
AATGTTATTAATTCAAGTTAATTTTAATAAATATATTTTTAAACAAAA
Found at i:8701827 original size:28 final size:29
Alignment explanation
Indices: 8701791--8701850 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
8701781 TAATTTTTTA
8701791 TTTTTTA-TTTTTTTATTTTAAAAATATT
1 TTTTTTATTTTTTTTATTTTAAAAATATT
8701819 TTTTTTATTTTTTTTATTTTAAAAATATT
1 TTTTTTATTTTTTTTATTTTAAAAATATT
8701848 TTT
1 TTT
8701851 AAAATACTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 7 0.23
29 24 0.77
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (29 bp):
TTTTTTATTTTTTTTATTTTAAAAATATT
Found at i:8704645 original size:29 final size:27
Alignment explanation
Indices: 8704613--8704680 Score: 64
Period size: 29 Copynumber: 2.4 Consensus size: 27
8704603 TAAAAATAAC
*
8704613 ATATAATAATTAGATATAAAATACGAATG
1 ATATAATAATCA-A-ATAAAATACGAATG
* *
8704642 ATATGAAAAAATCAAATAAAATACGAATT
1 ATAT--AATAATCAAATAAAATACGAATG
*
8704671 ATATGATAAT
1 ATATAATAAT
8704681 AAAAATTTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
27 4 0.12
29 21 0.66
30 1 0.03
31 6 0.19
ACGTcount: A:0.57, C:0.04, G:0.09, T:0.29
Consensus pattern (27 bp):
ATATAATAATCAAATAAAATACGAATG
Found at i:8711217 original size:16 final size:16
Alignment explanation
Indices: 8711164--8711219 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
8711154 CGTTTGGTTC
*
8711164 GCTGTAATGGAATAGA
1 GCTGTAATGAAATAGA
* * *
8711180 GTTATAATGTAATAGA
1 GCTGTAATGAAATAGA
*
8711196 GTTGTAATGAAATAGA
1 GCTGTAATGAAATAGA
8711212 GCTGTAAT
1 GCTGTAAT
8711220 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.32
Consensus pattern (16 bp):
GCTGTAATGAAATAGA
Found at i:8711426 original size:37 final size:37
Alignment explanation
Indices: 8711384--8711454 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
8711374 TTGTTATTAA
*
8711384 ATTTTAATAGGATTATTATTAAAAATAATTTAATCAT
1 ATTTTAATAGAATTATTATTAAAAATAATTTAATCAT
* *
8711421 ATTTTAATATAATTATTATTAAATATAATTTAAT
1 ATTTTAATAGAATTATTATTAAAAATAATTTAAT
8711455 AAATATAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (37 bp):
ATTTTAATAGAATTATTATTAAAAATAATTTAATCAT
Found at i:8711432 original size:21 final size:20
Alignment explanation
Indices: 8711408--8711501 Score: 72
Period size: 21 Copynumber: 4.7 Consensus size: 20
8711398 ATTATTAAAA
8711408 ATAATTTAATCATATTTTAAT
1 ATAATTTAAT-ATATTTTAAT
*
8711429 ATAA-TT-AT-TA-TTAAAT
1 ATAATTTAATATATTTTAAT
* *
8711445 ATAATTTAATA-AATATAAT
1 ATAATTTAATATATTTTAAT
8711464 ATAATATTTAATAATATTTTTAAT
1 AT-A-ATTTAAT-ATA-TTTTAAT
*
8711488 ATAAATTAATATAT
1 ATAATTTAATATAT
8711502 ATAATAATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
16 9 0.16
17 4 0.07
18 3 0.05
19 8 0.14
20 4 0.07
21 14 0.24
22 7 0.12
23 2 0.03
24 7 0.12
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAATTTAATATATTTTAAT
Found at i:8711466 original size:19 final size:19
Alignment explanation
Indices: 8711442--8711507 Score: 60
Period size: 19 Copynumber: 3.2 Consensus size: 19
8711432 ATTATTATTA
8711442 AATATAATTTAATAAATAT
1 AATATAATTTAATAAATAT
*
8711461 AATATAATATTTAATAATATTTTT
1 AATAT-A-ATTTAATAA-A--TAT
* *
8711485 AATATAAATTAATATATAT
1 AATATAATTTAATAAATAT
8711504 AATA
1 AATA
8711508 ATATTTTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
19 11 0.29
20 1 0.03
21 10 0.26
22 8 0.21
23 1 0.03
24 7 0.18
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
AATATAATTTAATAAATAT
Found at i:8711510 original size:31 final size:34
Alignment explanation
Indices: 8711453--8711522 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 34
8711443 ATATAATTTA
8711453 ATAAATATAATATAATATTTAATAATATTTTTAAT
1 ATAAATATAATATAATA-TTAATAATATTTTTAAT
8711488 ATAAAT-TAATAT-ATA-TAATAATATTTTTAAT
1 ATAAATATAATATAATATTAATAATATTTTTAAT
8711519 ATAA
1 ATAA
8711523 TTATTTTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
31 20 0.57
33 3 0.09
34 6 0.17
35 6 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (34 bp):
ATAAATATAATATAATATTAATAATATTTTTAAT
Found at i:8711517 original size:43 final size:45
Alignment explanation
Indices: 8711414--8711556 Score: 140
Period size: 43 Copynumber: 3.3 Consensus size: 45
8711404 AAAAATAATT
* * * * *
8711414 TAATCATATTTTAATATAATTATTATTAAATATAATTTAATAAATA
1 TAATAATATTTTTATATAATTATT-TTTAATATAAATTAATATATA
*
8711460 TAAT-ATAATATTTA-ATAA-TATTTTTAATATAAATTAATATATA
1 TAATAAT-ATTTTTATATAATTATTTTTAATATAAATTAATATATA
*
8711503 TAATAATATTTTTAATATAATTATTTTT-ATATTAATT--TATAT-
1 TAATAATATTTTT-ATATAATTATTTTTAATATAAATTAATATATA
8711545 TAA-AATATTTTT
1 TAATAATATTTTT
8711557 TTTGTTTTAT
Statistics
Matches: 85, Mismatches: 7, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
41 9 0.11
42 3 0.04
43 32 0.38
44 7 0.08
45 18 0.21
46 16 0.19
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (45 bp):
TAATAATATTTTTATATAATTATTTTTAATATAAATTAATATATA
Found at i:8711534 original size:31 final size:30
Alignment explanation
Indices: 8711414--8711526 Score: 103
Period size: 31 Copynumber: 3.8 Consensus size: 30
8711404 AAAAATAATT
* *
8711414 TAATCATA-TTTTAATATAATTATTAT-TA
1 TAATAATATTTTTAATATAATTATAATATA
* *
8711442 -AAT-ATAATTTAATAAATATAA-TATAATATT
1 TAATAAT-ATTT--TTAATATAATTATAATATA
8711472 TAATAATATTTTTAATATAAATTA-ATATATA
1 TAATAATATTTTTAATAT-AATTATA-ATATA
8711503 TAATAATATTTTTAATATAATTAT
1 TAATAATATTTTTAATATAATTAT
8711527 TTTTATATTA
Statistics
Matches: 69, Mismatches: 5, Indels: 19
0.74 0.05 0.20
Matches are distributed among these distances:
26 2 0.03
27 4 0.06
28 2 0.03
29 11 0.16
30 17 0.25
31 31 0.45
32 2 0.03
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.50
Consensus pattern (30 bp):
TAATAATATTTTTAATATAATTATAATATA
Found at i:8711542 original size:16 final size:15
Alignment explanation
Indices: 8711422--8711531 Score: 61
Period size: 14 Copynumber: 7.3 Consensus size: 15
8711412 TTTAATCATA
8711422 TTTTAATATAATTAT
1 TTTTAATATAATTAT
*
8711437 TATTAAATATAATT-T
1 T-TTTAATATAATTAT
** *
8711452 AATAAATATAATATAAT
1 TTTTAATATAAT-T-AT
*
8711469 ATTT-A-ATAA-TAT
1 TTTTAATATAATTAT
8711481 TTTTAATATAA--AT
1 TTTTAATATAATTAT
**
8711494 TAATATATATAATAATAT
1 TTTTA-ATATAAT--TAT
8711512 TTTTAATATAATTAT
1 TTTTAATATAATTAT
8711527 TTTTA
1 TTTTA
8711532 TATTAATTTA
Statistics
Matches: 74, Mismatches: 10, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
12 5 0.07
13 7 0.09
14 20 0.27
15 15 0.20
16 12 0.16
17 10 0.14
18 5 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTTTAATATAATTAT
Found at i:8711599 original size:34 final size:34
Alignment explanation
Indices: 8711527--8711600 Score: 85
Period size: 34 Copynumber: 2.2 Consensus size: 34
8711517 ATATAATTAT
** **** *
8711527 TTTTATATTAATTTATATTAAAATATTTTTTTTG
1 TTTTATATTAAACTATATTAAAATATTTCAAATA
8711561 TTTTATATTAAACTATATTAAAATATTTCAAATA
1 TTTTATATTAAACTATATTAAAATATTTCAAATA
8711595 TTTTAT
1 TTTTAT
8711601 TTTTATATTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (34 bp):
TTTTATATTAAACTATATTAAAATATTTCAAATA
Found at i:8714252 original size:15 final size:17
Alignment explanation
Indices: 8714232--8714263 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
8714222 ACACATGGTC
8714232 GTGTGTC-CAAG-CCGT
1 GTGTGTCACAAGACCGT
8714247 GTGTGTCACAAGACCGT
1 GTGTGTCACAAGACCGT
8714264 ATGGCCAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (17 bp):
GTGTGTCACAAGACCGT
Found at i:8717935 original size:26 final size:26
Alignment explanation
Indices: 8717906--8717968 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
8717896 ACGAATTTTC
* *
8717906 TCAAAATTTTACCGGGAGTAAAATCG
1 TCAAAATTTTACCGAGAGTAAAATCA
*
8717932 TCAAAATTTTACTGAGAGTAAAATCA
1 TCAAAATTTTACCGAGAGTAAAATCA
*
8717958 TTAAAATTTTA
1 TCAAAATTTTA
8717969 TAATGGGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACCGAGAGTAAAATCA
Found at i:8717978 original size:26 final size:26
Alignment explanation
Indices: 8717906--8717981 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 26
8717896 ACGAATTTTC
*** *
8717906 TCAAAATTTTACCGGGAGTAAAATCG
1 TCAAAATTTTACTAAGAGTAAAATCA
*
8717932 TCAAAATTTTACTGAGAGTAAAATCA
1 TCAAAATTTTACTAAGAGTAAAATCA
* *
8717958 TTAAAATTTTA-TAATGGGTAAAAT
1 TCAAAATTTTACTAA-GAGTAAAAT
8717982 TAGCGTGAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
25 2 0.05
26 41 0.95
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACTAAGAGTAAAATCA
Found at i:8720174 original size:17 final size:17
Alignment explanation
Indices: 8720152--8720208 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
8720142 AAATAGGGTT
8720152 TAAATTTTCTTTTTGTC
1 TAAATTTTCTTTTTGTC
*** *
8720169 TAAATTAGTTCTTGAAGGTT
1 TAAATT--TTCTT-TTTGTC
8720189 TAAATTTTCTTTTTGTC
1 TAAATTTTCTTTTTGTC
8720206 TAA
1 TAA
8720209 GTTAGTTCTT
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
17 11 0.38
18 5 0.17
19 5 0.17
20 8 0.28
ACGTcount: A:0.25, C:0.09, G:0.11, T:0.56
Consensus pattern (17 bp):
TAAATTTTCTTTTTGTC
Found at i:8720189 original size:37 final size:37
Alignment explanation
Indices: 8720148--8720218 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
8720138 CTCAAAATAG
8720148 GGTTTAAATTTTCTTTTTGTCTAAATTAGTTCTTGAA
1 GGTTTAAATTTTCTTTTTGTCTAAATTAGTTCTTGAA
*
8720185 GGTTTAAATTTTCTTTTTGTCTAAGTTAGTTCTT
1 GGTTTAAATTTTCTTTTTGTCTAAATTAGTTCTT
8720219 AAACTTAGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.21, C:0.08, G:0.14, T:0.56
Consensus pattern (37 bp):
GGTTTAAATTTTCTTTTTGTCTAAATTAGTTCTTGAA
Found at i:8720759 original size:6 final size:6
Alignment explanation
Indices: 8720744--8720821 Score: 97
Period size: 6 Copynumber: 13.0 Consensus size: 6
8720734 AATAATTATA
* * *
8720744 TATATG TATATT TATATT T-T-TA TATATG TATATTT ATATATT TATATT
1 TATATT TATATT TATATT TATATT TATATT TATA-TT -TATATT TATATT
8720792 TATATT TATATT TATATT TATATT TATATT
1 TATATT TATATT TATATT TATATT TATATT
8720822 AAATCACTAA
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
4 2 0.03
5 2 0.03
6 53 0.83
7 3 0.05
8 4 0.06
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (6 bp):
TATATT
Found at i:8720766 original size:24 final size:24
Alignment explanation
Indices: 8720739--8720820 Score: 96
Period size: 22 Copynumber: 3.4 Consensus size: 24
8720729 TAAATAATAA
8720739 TTATATATATGTATATTTATA-TT
1 TTATATATATGTATATTTATATTT
8720762 TT-TATATATGTATATTTATATATT
1 TTATATATATGTATATTTATAT-TT
* *
8720786 TATATTTATATTTATATTTATATTT
1 T-TATATATATGTATATTTATATTT
* *
8720811 ATATTTATAT
1 TTATATATAT
8720821 TAAATCACTA
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
22 18 0.35
23 2 0.04
24 12 0.23
25 3 0.06
26 17 0.33
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (24 bp):
TTATATATATGTATATTTATATTT
Found at i:8721796 original size:201 final size:203
Alignment explanation
Indices: 8721423--8721823 Score: 644
Period size: 202 Copynumber: 2.0 Consensus size: 203
8721413 TCAGGATTAA
* *
8721423 AAAAATCAATTTTTTAGCGGAGCCATGTAGAATAGCGTCACCTATATAAATATCAAGAAAATACT
1 AAAAATCAATTTTTTAGCAGAGCCATGTAGAATAGCGTCACCTATATAAATACCAAGAAAATACT
* * ** * **
8721488 GTAATTTTTAAAAAATAAGGAGACTTTTAAAAAAATTATTTTCTGATAGAGTTAAATAAATTAGC
66 ATAATTTTAAAAAAATAAGGAGACTTAAAAAAAAATCATTTTCTGATAGAGCCAAATAAATTAGC
** *
8721553 GCCACCAATTTCCAAAGCTGTCTATCTCCTTTTGCAACACTTTTTTAATATATTTAAAA-TTTTA
131 GCCACCAATTTCCAAAGCTACCTATCTCCTTTTACAACACTTTTTTAATATATTTAAAATTTTTA
8721617 AAAAATTT
196 AAAAATTT
* *
8721625 AAAAATCAATTTTTTGGCAGAGCCATGTAGAATAGTGTCACCTATATAAATACCAAGAAAATACT
1 AAAAATCAATTTTTTAGCAGAGCCATGTAGAATAGCGTCACCTATATAAATACCAAGAAAATACT
*
8721690 ATAATTTTAAAAAAATAAGGAGAC-TAAAAAAAAATCATTTTCTGATAGAGCCAAATAAATTGGC
66 ATAATTTTAAAAAAATAAGGAGACTTAAAAAAAAATCATTTTCTGATAGAGCCAAATAAATTAGC
*
8721754 GCCACCAGTTTCCAAAGCTACCTATCTCCTTTTACAACACTTTTTTAATATATTTAAAATTTTTA
131 GCCACCAATTTCCAAAGCTACCTATCTCCTTTTACAACACTTTTTTAATATATTTAAAATTTTTA
8721819 AAAAA
196 AAAAA
8721824 AATTTAAGGT
Statistics
Matches: 182, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
201 89 0.49
202 93 0.51
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.33
Consensus pattern (203 bp):
AAAAATCAATTTTTTAGCAGAGCCATGTAGAATAGCGTCACCTATATAAATACCAAGAAAATACT
ATAATTTTAAAAAAATAAGGAGACTTAAAAAAAAATCATTTTCTGATAGAGCCAAATAAATTAGC
GCCACCAATTTCCAAAGCTACCTATCTCCTTTTACAACACTTTTTTAATATATTTAAAATTTTTA
AAAAATTT
Found at i:8735892 original size:15 final size:17
Alignment explanation
Indices: 8735855--8735894 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
8735845 CAATAAAGAC
8735855 TAAAATATTATAAACAA
1 TAAAATATTATAAACAA
8735872 -ATAAATATT-T-AACAA
1 TA-AAATATTATAAACAA
8735887 TAAAATAT
1 TAAAATAT
8735895 GTCATGCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
15 11 0.52
16 3 0.14
17 7 0.33
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAAATATTATAAACAA
Found at i:8738877 original size:28 final size:27
Alignment explanation
Indices: 8738846--8738916 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
8738836 TAAAAAATAT
8738846 CCAAAATGTTATAAAATTTTTTTATTTA
1 CCAAAAT-TTATAAAATTTTTTTATTTA
** *
8738874 CCAAAAAATATATAATTTTTTTATTTA
1 CCAAAATTTATAAAATTTTTTTATTTA
8738901 CCAAAAATTTATAAAA
1 CC-AAAATTTATAAAA
8738917 AAAACAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.46, C:0.08, G:0.01, T:0.44
Consensus pattern (27 bp):
CCAAAATTTATAAAATTTTTTTATTTA
Found at i:8738885 original size:27 final size:28
Alignment explanation
Indices: 8738855--8738916 Score: 99
Period size: 27 Copynumber: 2.2 Consensus size: 28
8738845 TCCAAAATGT
8738855 TATAAAATTTTTTTATTTACCAAAAA-A
1 TATAAAATTTTTTTATTTACCAAAAATA
* *
8738882 TATATAATTTTTTTATTTACCAAAAATT
1 TATAAAATTTTTTTATTTACCAAAAATA
8738910 TATAAAA
1 TATAAAA
8738917 AAAACAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
27 25 0.81
28 6 0.19
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (28 bp):
TATAAAATTTTTTTATTTACCAAAAATA
Found at i:8738934 original size:16 final size:16
Alignment explanation
Indices: 8738913--8738953 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
8738903 AAAAATTTAT
8738913 AAAAAAAACAAAAAAC
1 AAAAAAAACAAAAAAC
*
8738929 AAAAAAAATAAAAAAC
1 AAAAAAAACAAAAAAC
8738945 AGAAAAAAA
1 A-AAAAAAA
8738954 AACCTGGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.88, C:0.07, G:0.02, T:0.02
Consensus pattern (16 bp):
AAAAAAAACAAAAAAC
Found at i:8739027 original size:27 final size:27
Alignment explanation
Indices: 8738985--8739079 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 27
8738975 TCCCTGGGTG
* *
8738985 AAGGGAACACTATTGGCGGCACCAAAC
1 AAGGGAACCCTGTTGGCGGCACCAAAC
8739012 AAGGGAACCCTGTTGGCGGCACCAAAC
1 AAGGGAACCCTGTTGGCGGCACCAAAC
**
8739039 AAGGGTTCCCTGTTGGCGGCACCAAAC
1 AAGGGAACCCTGTTGGCGGCACCAAAC
**
8739066 AAGGGTTCCCTGTT
1 AAGGGAACCCTGTT
8739080 NNNNNNNNNN
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.17
Consensus pattern (27 bp):
AAGGGAACCCTGTTGGCGGCACCAAAC
Found at i:8744402 original size:17 final size:18
Alignment explanation
Indices: 8744369--8744403 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8744359 TTTTTTTCCT
*
8744369 TTTTTTTATTCTTTTTTG
1 TTTTTTTACTCTTTTTTG
8744387 TTTTTTTACT-TTTTTTG
1 TTTTTTTACTCTTTTTTG
8744404 ATATATTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.83
Consensus pattern (18 bp):
TTTTTTTACTCTTTTTTG
Found at i:8745297 original size:23 final size:23
Alignment explanation
Indices: 8745238--8745314 Score: 70
Period size: 23 Copynumber: 3.4 Consensus size: 23
8745228 AATTACCTTA
8745238 TTTTCTTT-TT-TT-TCCTTTCC
1 TTTTCTTTCTTCTTCTCCTTTCC
** * *
8745258 TTCCTTCCCTCTTCTTCTTCTTTCT
1 TT--TTCTTTCTTCTTCTCCTTTCC
*
8745283 TTTTTTTTCTTCTTCTCCTTTCC
1 TTTTCTTTCTTCTTCTCCTTTCC
8745306 TTTTCTTTC
1 TTTTCTTTC
8745315 CTTATTTTTC
Statistics
Matches: 42, Mismatches: 10, Indels: 7
0.71 0.17 0.12
Matches are distributed among these distances:
20 2 0.05
22 4 0.10
23 26 0.62
24 2 0.05
25 8 0.19
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTTCTTTCTTCTTCTCCTTTCC
Found at i:8745484 original size:22 final size:23
Alignment explanation
Indices: 8745449--8745491 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8745439 TTCCTCTCCT
*
8745449 TTCCTTTTCCTTCTTTTTCTTTC
1 TTCCTTTTCCTTCTTCTTCTTTC
*
8745472 TTCC-TTTCTTTCTTCTTCTT
1 TTCCTTTTCCTTCTTCTTCTT
8745492 CCCCTCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (23 bp):
TTCCTTTTCCTTCTTCTTCTTTC
Found at i:8745612 original size:27 final size:27
Alignment explanation
Indices: 8745539--8745616 Score: 129
Period size: 27 Copynumber: 2.9 Consensus size: 27
8745529 AAATTCAAGG
**
8745539 TGGTGCCGCCAACAGGGAACCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
8745566 TGGTGCCGCCAACAGGGTTCCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
*
8745593 TGGTGCCGCCAACAGTGTTCCCTT
1 TGGTGCCGCCAACAGGGTTCCCTT
8745617 CACCCAGGGA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.14, C:0.31, G:0.28, T:0.27
Consensus pattern (27 bp):
TGGTGCCGCCAACAGGGTTCCCTTGTT
Found at i:8745703 original size:27 final size:26
Alignment explanation
Indices: 8745671--8745738 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 26
8745661 TTTTTTGTTT
8745671 TTTATATATTTTGGTAAATAAAAAAA
1 TTTATATATTTTGGTAAATAAAAAAA
8745697 TTATATATATTTTGGTAAATAAAAAAA
1 TT-TATATATTTTGGTAAATAAAAAAA
*
8745724 TTTATAACATTTTGG
1 TTTAT-ATATTTTGG
8745739 ATATTTTTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 5 0.13
27 34 0.87
ACGTcount: A:0.46, C:0.01, G:0.09, T:0.44
Consensus pattern (26 bp):
TTTATATATTTTGGTAAATAAAAAAA
Found at i:8746958 original size:24 final size:25
Alignment explanation
Indices: 8746931--8746983 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
8746921 AAATTTAGCT
* *
8746931 TTTAACATTTATTTCTTTT-ATCAC
1 TTTAAAATTTATTTATTTTAATCAC
8746955 TTTAAAATTTATTTATTTTAATCAC
1 TTTAAAATTTATTTATTTTAATCAC
8746980 TTTA
1 TTTA
8746984 GCTCTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTAAAATTTATTTATTTTAATCAC
Found at i:8749689 original size:18 final size:18
Alignment explanation
Indices: 8749649--8749687 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
8749639 TTAATAATAA
*
8749649 TTTTATTTTGTTTTTATC
1 TTTTATTTTGATTTTATC
*
8749667 TTTTATTTT-ATTTTATG
1 TTTTATTTTGATTTTATC
8749684 TTTT
1 TTTT
8749688 TAATATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.13, C:0.03, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTTATTTTGATTTTATC
Found at i:8754266 original size:39 final size:39
Alignment explanation
Indices: 8754223--8754299 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
8754213 CCCCAGTCAG
* *
8754223 TCAACAAAATGCAAAATTTACTAGAATGCTTAGTGGGAT
1 TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGAT
* *
8754262 TCAACAAAATGGAAAATTAACCAGAATTCTTAGTGGGA
1 TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGA
8754300 CTGAAAGGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26
Consensus pattern (39 bp):
TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGAT
Found at i:8770472 original size:70 final size:69
Alignment explanation
Indices: 8770388--8770517 Score: 169
Period size: 69 Copynumber: 1.9 Consensus size: 69
8770378 ATAGAAGTGG
*
8770388 TGAAAATAGAGAAAT-GATAATCATTTTG-AAATG-AT-TATGATTTTCTCCAAAATGAAAATGA
1 TGAAAATAGAGAAATGGA-AA-CA-TTTGAAAATGAATGTA-G-TTTTCTCCAAAATCAAAATGA
8770449 AAATGAAAA
61 AAATGAAAA
*
8770458 TGAAAATGGAGAAATGGAAACATTTGAAAATGAATGTAGTTTTCTCCAAAATCAAAATGA
1 TGAAAATAGAGAAATGGAAACATTTGAAAATGAATGTAGTTTTCTCCAAAATCAAAATGA
8770518 CTTGAAAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
68 4 0.07
69 27 0.50
70 19 0.35
71 4 0.07
ACGTcount: A:0.48, C:0.07, G:0.16, T:0.28
Consensus pattern (69 bp):
TGAAAATAGAGAAATGGAAACATTTGAAAATGAATGTAGTTTTCTCCAAAATCAAAATGAAAATG
AAAA
Found at i:8770477 original size:6 final size:6
Alignment explanation
Indices: 8770436--8770465 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
8770426 GATTTTCTCC
8770436 AAAATG AAAATG AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG
8770466 GAGAAATGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:8771168 original size:10 final size:11
Alignment explanation
Indices: 8771137--8771169 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
8771127 AAAAGTTAAG
8771137 TATATA-TATA
1 TATATATTATA
8771147 TATATATTATA
1 TATATATTATA
8771158 T-TATATTATA
1 TATATATTATA
8771168 TA
1 TA
8771170 ATAAAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 16 0.76
11 5 0.24
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TATATATTATA
Found at i:8772207 original size:22 final size:23
Alignment explanation
Indices: 8772159--8772215 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
8772149 CTAGCACGAC
*
8772159 AGTGCTCTCCGTTTAGCATATCT
1 AGTGCTCTCTGTTTAGCATATCT
8772182 -GTGCTCTCTGTTTAGCACT-T-T
1 AGTGCTCTCTGTTTAGCA-TATCT
*
8772203 AGTGCTCTTTGTT
1 AGTGCTCTCTGTT
8772216 CATTAGTGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
21 1 0.03
22 28 0.93
23 1 0.03
ACGTcount: A:0.12, C:0.23, G:0.19, T:0.46
Consensus pattern (23 bp):
AGTGCTCTCTGTTTAGCATATCT
Found at i:8783103 original size:25 final size:25
Alignment explanation
Indices: 8783074--8783143 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
8783064 TTACCAATTC
*
8783074 CAACTCTTATGAGCTTACCGATACT
1 CAACTCGTATGAGCTTACCGATACT
* *
8783099 CAACTCGTATGAGCTTATCGATATT
1 CAACTCGTATGAGCTTACCGATACT
* *
8783124 CAACTCGGAGGAGCTTACCG
1 CAACTCGTATGAGCTTACCG
8783144 TTTATCGCTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (25 bp):
CAACTCGTATGAGCTTACCGATACT
Found at i:8784966 original size:21 final size:20
Alignment explanation
Indices: 8784940--8784982 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
8784930 AAAACAACTA
8784940 AAAGAA-AACAAATTCAAGAAC
1 AAAGAATAA-AAATTCAA-AAC
*
8784961 AAAGAATAAAGATTCAAAAC
1 AAAGAATAAAAATTCAAAAC
8784981 AA
1 AA
8784983 TAAACAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 13 0.65
22 2 0.10
ACGTcount: A:0.67, C:0.12, G:0.09, T:0.12
Consensus pattern (20 bp):
AAAGAATAAAAATTCAAAAC
Found at i:8786317 original size:33 final size:33
Alignment explanation
Indices: 8786280--8786392 Score: 127
Period size: 33 Copynumber: 3.4 Consensus size: 33
8786270 AGGGTCTTAG
* * *
8786280 TGCTCATTTTCATGCATAATTAGATTCCATCAT
1 TGCTCATTTTGATGCACAATTAGATTCCATCAC
*
8786313 TGCTCATTTTGATGCACAATTGGATTCCATCAC
1 TGCTCATTTTGATGCACAATTAGATTCCATCAC
* * * * *
8786346 TGCTTATTTTGATGCACGATTTGATTCCTTCTC
1 TGCTCATTTTGATGCACAATTAGATTCCATCAC
* *
8786379 TACTCACTTTGATG
1 TGCTCATTTTGATG
8786393 GTCGCATTAC
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 68 1.00
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.42
Consensus pattern (33 bp):
TGCTCATTTTGATGCACAATTAGATTCCATCAC
Found at i:8789642 original size:21 final size:24
Alignment explanation
Indices: 8789618--8789665 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
8789608 TTTGTGTTTA
*
8789618 GTTGAAGA-GAA-AA-CAAATTTT
1 GTTGAAGATGAATAACCAAATGTT
8789639 GTTGAAGATGAATAACCAAATGTT
1 GTTGAAGATGAATAACCAAATGTT
8789663 GTT
1 GTT
8789666 TGTATACGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 8 0.35
22 3 0.13
23 2 0.09
24 10 0.43
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (24 bp):
GTTGAAGATGAATAACCAAATGTT
Found at i:8792493 original size:14 final size:13
Alignment explanation
Indices: 8792476--8792520 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
8792466 TTCATATGAA
8792476 ATTATAATTTTTT
1 ATTATAATTTTTT
8792489 CATTATAATTTTTT
1 -ATTATAATTTTTT
*
8792503 A-TATGATTTTTTT
1 ATTAT-AATTTTTT
8792516 ATTAT
1 ATTAT
8792521 TTCTTATATG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 3 0.11
13 9 0.32
14 16 0.57
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (13 bp):
ATTATAATTTTTT
Found at i:8792596 original size:72 final size:71
Alignment explanation
Indices: 8792508--8792685 Score: 275
Period size: 72 Copynumber: 2.5 Consensus size: 71
8792498 TTTTTATATG
*
8792508 ATTTTTTTATTATTTCTTATATGAAAATATTGTAACAATTGATAAAGTGAAAATTTTTCTATGAA
1 ATTTTTTTATTATTTCTTATATGAAAATATTGTAACAATTGATAAAGTGAAAATTTTTATATGAA
8792573 ATTATA
66 ATTATA
* * * *
8792579 ATTTTTATTATTATTTCTTATATGAAAATATTGTAATATTTGATAATGTGGAAATTTTTATATGA
1 ATTTTT-TTATTATTTCTTATATGAAAATATTGTAACAATTGATAAAGTGAAAATTTTTATATGA
8792644 AATTATA
65 AATTATA
* * *
8792651 ATTTTTCTATGATTTTTTATATGAAAATATTGTAA
1 ATTTTTTTATTATTTCTTATATGAAAATATTGTAA
8792686 ATACTCAATG
Statistics
Matches: 98, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
71 32 0.33
72 66 0.67
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.51
Consensus pattern (71 bp):
ATTTTTTTATTATTTCTTATATGAAAATATTGTAACAATTGATAAAGTGAAAATTTTTATATGAA
ATTATA
Found at i:8794193 original size:22 final size:22
Alignment explanation
Indices: 8794168--8794250 Score: 121
Period size: 22 Copynumber: 3.8 Consensus size: 22
8794158 GACCCAGAAA
8794168 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
8794190 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
* * * **
8794212 CATGAGGGTTTAGTTCGTTAAA
1 CATGAGAGCTTAGTACGTTAGC
8794234 CATGAGAGCTTAGTACG
1 CATGAGAGCTTAGTACG
8794251 CGTCCAAGCA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 53 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (22 bp):
CATGAGAGCTTAGTACGTTAGC
Found at i:8794710 original size:19 final size:19
Alignment explanation
Indices: 8794686--8794792 Score: 160
Period size: 19 Copynumber: 5.6 Consensus size: 19
8794676 TTCAGGGATT
8794686 TGCAATCTTAGATATGATA
1 TGCAATCTTAGATATGATA
*
8794705 TGCAATCTTAGATATAATA
1 TGCAATCTTAGATATGATA
** *
8794724 TATAATCTTAGGTATGATA
1 TGCAATCTTAGATATGATA
8794743 TGCAATCTTAGATATGATA
1 TGCAATCTTAGATATGATA
**
8794762 TATAATCTTAGATATGATA
1 TGCAATCTTAGATATGATA
8794781 TGCAATCTTAGA
1 TGCAATCTTAGA
8794793 AGATATGATT
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 76 1.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
TGCAATCTTAGATATGATA
Found at i:8794732 original size:38 final size:38
Alignment explanation
Indices: 8794689--8794792 Score: 190
Period size: 38 Copynumber: 2.7 Consensus size: 38
8794679 AGGGATTTGC
8794689 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
* *
8794727 AATCTTAGGTATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
8794765 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
8794793 AGATATGATT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 63 1.00
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.38
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:8794818 original size:22 final size:21
Alignment explanation
Indices: 8794695--8794818 Score: 111
Period size: 19 Copynumber: 6.2 Consensus size: 21
8794685 TTGCAATCTT
*
8794695 AGATATGATATGCAATCTT--
1 AGATATGATATGTAATCTTAG
* *
8794714 AGATATAATATATAATCTTAG
1 AGATATGATATGTAATCTTAG
*
8794735 -G-TATGATATGCAATCTT--
1 AGATATGATATGTAATCTTAG
*
8794752 AGATATGATATATAATCTT--
1 AGATATGATATGTAATCTTAG
*
8794771 AGATATGATATGCAATCTTAG
1 AGATATGATATGTAATCTTAG
*
8794792 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TATGTAATCTTAG
8794815 AGAT
1 AGAT
8794819 TTAATTTGTA
Statistics
Matches: 85, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
18 1 0.01
19 60 0.71
20 1 0.01
22 12 0.14
23 11 0.13
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (21 bp):
AGATATGATATGTAATCTTAG
Found at i:8795402 original size:2 final size:2
Alignment explanation
Indices: 8795397--8795549 Score: 56
Period size: 2 Copynumber: 80.0 Consensus size: 2
8795387 TTTATTACCT
* ** *
8795397 TA TA TA TA TA TA TG TA CG TA TA TA TA TA TA TA T- TA TA T- TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * *
8795437 TC TA TA CA TA T- TT TA TA -A TT TC TA TA TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
8795477 -A TCA T- TA TC TT TA TGA TC TA TA TA TT TA T- TA -A CT- TA TA
1 TA T-A TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA -TA TA TA
* **
8795515 TA TA TA TA TA TA TA TG TA CG TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8795550 CTTTCTATCC
Statistics
Matches: 109, Mismatches: 29, Indels: 26
0.66 0.18 0.16
Matches are distributed among these distances:
1 10 0.09
2 95 0.87
3 4 0.04
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8795404 original size:18 final size:19
Alignment explanation
Indices: 8795381--8795431 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 19
8795371 TTTTATGATT
*
8795381 TATATATTTATTACCT-TA
1 TATATATATATTACCTATA
*
8795399 TATATATATATGTACGTATA
1 TATATATATAT-TACCTATA
8795419 TATATATATATTA
1 TATATATATATTA
8795432 TATTTTCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 10 0.34
19 6 0.21
20 13 0.45
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (19 bp):
TATATATATATTACCTATA
Found at i:8795442 original size:20 final size:20
Alignment explanation
Indices: 8795419--8795586 Score: 89
Period size: 20 Copynumber: 8.6 Consensus size: 20
8795409 TGTACGTATA
8795419 TATATATATATTATATTTTC
1 TATATATATATTATATTTTC
* * *
8795439 TATACATATTTTATAATTTC
1 TATATATATATTATATTTTC
*
8795459 TATATATATA-TATA-TGT-
1 TATATATATATTATATTTTC
* * **
8795476 AATCAT-TATCTT-TATGATC
1 TAT-ATATATATTATATTTTC
* * *
8795495 TATATATTTATTA-A-CTTA
1 TATATATATATTATATTTTC
* *
8795513 TATATATATATATATATGTAC
1 TATATATATAT-TATATTTTC
*
8795534 GTATATATATATTATACTTTC
1 -TATATATATATTATATTTTC
** * *
8795555 TATCCATATTTTATAATTTC
1 TATATATATATTATATTTTC
*
8795575 TATATGTATATT
1 TATATATATATT
8795587 TTTCTTTATT
Statistics
Matches: 107, Mismatches: 31, Indels: 20
0.68 0.20 0.13
Matches are distributed among these distances:
17 7 0.07
18 19 0.18
19 13 0.12
20 50 0.47
21 7 0.07
22 11 0.10
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (20 bp):
TATATATATATTATATTTTC
Found at i:8795472 original size:114 final size:116
Alignment explanation
Indices: 8795353--8795585 Score: 353
Period size: 116 Copynumber: 2.0 Consensus size: 116
8795343 TTTTTAAGTT
* * * *
8795353 TATATATGTAATTATTATTTTTATGATTTATATATTTATT-ACCT-TATATATATATATGTACGT
1 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACCTATATATATATATATATACGT
* *
8795416 ATATATATATATATTATATTTTCTATACATATTTTATAATTTCTATATATA
66 ACATATATATATATTATACTTTCTATACATATTTTATAATTTCTATATATA
* *
8795467 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATATATATATGT
1 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACCTATATATATATATATATACGT
* * *
8795532 ACGTATATATATATTATACTTTCTATCCATATTTTATAATTTCTATATGTA
66 ACATATATATATATTATACTTTCTATACATATTTTATAATTTCTATATATA
8795583 TAT
1 TAT
8795586 TTTTCTTTAT
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
114 37 0.35
115 3 0.03
116 66 0.62
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.54
Consensus pattern (116 bp):
TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACCTATATATATATATATATACGT
ACATATATATATATTATACTTTCTATACATATTTTATAATTTCTATATATA
Found at i:8795745 original size:31 final size:31
Alignment explanation
Indices: 8795688--8795746 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
8795678 CTTTCTTTTC
* *
8795688 TTCATTTTTTATATGTTTGTTGATTTATGTT
1 TTCATTTTTTATATGTTTGCTCATTTATGTT
*
8795719 TTCATTTTTTTTTAT-TTTGCTCATTTAT
1 TTCA-TTTTTTATATGTTTGCTCATTTAT
8795747 TTGATACTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 15 0.62
32 9 0.38
ACGTcount: A:0.15, C:0.07, G:0.08, T:0.69
Consensus pattern (31 bp):
TTCATTTTTTATATGTTTGCTCATTTATGTT
Found at i:8798686 original size:24 final size:25
Alignment explanation
Indices: 8798659--8798715 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 25
8798649 TATCTATCCC
**
8798659 TTTTCTTTTTTTAATTAAT-TTTCA
1 TTTTCTTTTTTTAAAAAATATTTCA
* *
8798683 TTTT-TATCTTTAAAAAATATTTCA
1 TTTTCTTTTTTTAAAAAATATTTCA
8798707 TTTTCTTTT
1 TTTTCTTTT
8798716 ACTTATTTAC
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
23 10 0.40
24 13 0.52
25 2 0.08
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTTCTTTTTTTAAAAAATATTTCA
Found at i:8799455 original size:24 final size:24
Alignment explanation
Indices: 8799423--8799475 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
8799413 ACTTAAACCG
*
8799423 ATTGAATTGCAAATCAGTGCTCTA
1 ATTGAATTGCAAATCAGTACTCTA
8799447 ATTGAATTGCAAATCAGTACTCTA
1 ATTGAATTGCAAATCAGTACTCTA
8799471 ATTGA
1 ATTGA
8799476 TTTGACCGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (24 bp):
ATTGAATTGCAAATCAGTACTCTA
Found at i:8805203 original size:2 final size:2
Alignment explanation
Indices: 8805192--8805238 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
8805182 TGTTTGGGAT
8805192 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
8805233 TT TA TA
1 TA TA TA
8805239 ATTTTCCATG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8805871 original size:18 final size:18
Alignment explanation
Indices: 8805822--8805872 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
8805812 TAAATTTTAA
8805822 TAAAA-TATAAAAAATATT
1 TAAAATTATAAAAAATA-T
*
8805840 TAAAATTAGGAAAAAATA-
1 TAAAATTA-TAAAAAATAT
8805858 TAAAATGTATAAAAA
1 TAAAAT-TATAAAAA
8805873 TGACCCTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 16 0.57
19 4 0.14
20 8 0.29
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (18 bp):
TAAAATTATAAAAAATAT
Found at i:8806057 original size:9 final size:9
Alignment explanation
Indices: 8806043--8806237 Score: 124
Period size: 10 Copynumber: 20.1 Consensus size: 9
8806033 CTTTTGGTAC
8806043 TATAATTTT
1 TATAATTTT
8806052 TATAATTATTT
1 TATAA-T-TTT
*
8806063 TATAAATTT
1 TATAATTTT
*
8806072 TATATTTCTT
1 TATAATT-TT
* *
8806082 TACATTTTT
1 TATAATTTT
8806091 TATAATTTTCT
1 TATAA-TTT-T
*
8806102 TATGAATTTA
1 TAT-AATTTT
*
8806112 TA-AAATTT
1 TATAATTTT
8806120 TATAATTTT
1 TATAATTTT
8806129 TATATATATTT
1 TATA-AT-TTT
8806140 TATAATTTT
1 TATAATTTT
*
8806149 TTTATATTTT
1 TATA-ATTTT
*
8806159 TATAAAATTT
1 TAT-AATTTT
*
8806169 TACAATTTTTTT
1 TATAA---TTTT
8806181 TATAATTTT
1 TATAATTTT
*
8806190 CTAAAATTTT
1 -TATAATTTT
*
8806200 TAAAATTCTT
1 TATAATT-TT
*
8806210 TCTAATTTT
1 TATAATTTT
8806219 TAATAATTTT
1 T-ATAATTTT
8806229 TAT-ATTTT
1 TATAATTTT
8806237 T
1 T
8806238 TTTATTAAAA
Statistics
Matches: 149, Mismatches: 20, Indels: 35
0.73 0.10 0.17
Matches are distributed among these distances:
8 12 0.08
9 51 0.34
10 54 0.36
11 23 0.15
12 9 0.06
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.63
Consensus pattern (9 bp):
TATAATTTT
Found at i:8806072 original size:20 final size:20
Alignment explanation
Indices: 8806043--8806189 Score: 78
Period size: 19 Copynumber: 7.5 Consensus size: 20
8806033 CTTTTGGTAC
*
8806043 TATAATTTTTATAATTATTT
1 TATAAATTTTATAATTATTT
8806063 TATAAATTTTAT-ATT-TCTT
1 TATAAATTTTATAATTAT-TT
* **
8806082 TACATTTTTTATAATT-TTCT
1 TATAAATTTTATAATTATT-T
* *
8806102 TATGAA-TTTATAA-AATTT
1 TATAAATTTTATAATTATTT
*
8806120 TATAATTTTTAT-ATATATTT
1 TATAAATTTTATAAT-TATTT
* *
8806140 TAT-AATTTTTTTA-TATTTT
1 TATAAATTTTATAATTA-TTT
*
8806159 TATAAAATTTTACAATT-TTT
1 TAT-AAATTTTATAATTATTT
*
8806179 TTTATAATTTT
1 TATA-AATTTT
8806190 CTAAAATTTT
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
18 9 0.09
19 42 0.44
20 37 0.39
21 7 0.07
22 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (20 bp):
TATAAATTTTATAATTATTT
Found at i:8806139 original size:29 final size:29
Alignment explanation
Indices: 8806088--8806170 Score: 75
Period size: 29 Copynumber: 2.9 Consensus size: 29
8806078 TCTTTACATT
8806088 TTTTATAATTTTCT-TATGAA-TTTATAAAA
1 TTTTATAATTTT-TATATGAATTTTAT-AAA
*
8806117 TTTTATAATTTTTATAT-ATATTTTATAAT
1 TTTTATAATTTTTATATGA-ATTTTATAAA
* *
8806146 TTTTTTATATTTTTATA-AAATTTTA
1 TTTTATA-ATTTTTATATGAATTTTA
8806171 CAATTTTTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
28 2 0.04
29 30 0.64
30 15 0.32
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.63
Consensus pattern (29 bp):
TTTTATAATTTTTATATGAATTTTATAAA
Found at i:8806147 original size:49 final size:48
Alignment explanation
Indices: 8806061--8806179 Score: 145
Period size: 49 Copynumber: 2.5 Consensus size: 48
8806051 TTATAATTAT
*
8806061 TTTAT-AAATTTTAT-ATTTCTTTACATTTTTTATAATTTTCTTATGA-A
1 TTTATAAAATTTTATAATTT-TTTACATATTTTATAATTTTCTTAT-ATA
* * *
8806108 TTTATAAAATTTTATAATTTTTATATATATTTTATAATTTTTTTATATT
1 TTTATAAAATTTTATAATTTTT-TACATATTTTATAATTTTCTTATATA
*
8806157 TTTATAAAATTTTACAATTTTTT
1 TTTATAAAATTTTATAATTTTTT
8806180 TTATAATTTT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
47 5 0.08
48 13 0.21
49 45 0.71
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (48 bp):
TTTATAAAATTTTATAATTTTTTACATATTTTATAATTTTCTTATATA
Found at i:8806160 original size:39 final size:38
Alignment explanation
Indices: 8806043--8806239 Score: 134
Period size: 39 Copynumber: 5.0 Consensus size: 38
8806033 CTTTTGGTAC
*
8806043 TATAATTTTTATAATTATTTTATAAATTTTATAT-TTCTT
1 TATAATTTTTATAA-TATTTTATAATTTTTATATATT-TT
* * * * *
8806082 TACATTTTTTATAATTTTCTTATGAA--TTTATAAAATTT
1 TATAATTTTTATAATATT-TTAT-AATTTTTATATATTTT
*
8806120 TATAATTTTTATATATATTTTATAATTTTTTTATATTTT
1 TATAATTTTTATA-ATATTTTATAATTTTTATATATTTT
* * * *
8806159 TATAAAATTTTACAATTTTTTTTATAATTTTCTA-AAATTTT
1 TAT-AATTTTTATAA--TATTTTATAATTTT-TATATATTTT
* * *
8806200 TAAAATTCTTTCTAAT-TTTTAATAATTTTTATATTTTTT
1 TATAATT-TTTATAATATTTT-ATAATTTTTATATATTTT
8806239 T
1 T
8806240 TATTAAAATT
Statistics
Matches: 123, Mismatches: 22, Indels: 26
0.72 0.13 0.15
Matches are distributed among these distances:
37 2 0.02
38 32 0.26
39 49 0.40
40 13 0.11
41 26 0.21
42 1 0.01
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.63
Consensus pattern (38 bp):
TATAATTTTTATAATATTTTATAATTTTTATATATTTT
Found at i:8806168 original size:41 final size:40
Alignment explanation
Indices: 8806117--8806282 Score: 105
Period size: 41 Copynumber: 4.2 Consensus size: 40
8806107 ATTTATAAAA
*
8806117 TTTTAT-AATTTTTATATATATTTTATAATTTTTTTATAT
1 TTTTATAAAATTTTATATATATTTTATAATTTTTTTATAT
* * * * * *
8806156 TTTTATAAAATTTTACAATTTTTTTTATAATTTTCTAAAAT
1 TTTTATAAAATTTTA-TATATATTTTATAATTTTTTTATAT
* * * *
8806197 TTTTA-AAATTCTTTCTA-AT-TTTTAATAATTTTTATATTTT
1 TTTTATAAAAT-TTTATATATATTTT-ATAATTTTTTTA-TAT
*
8806237 TTTTATTAAAA-TTTA-ATA-ATTTAATAATTAATTTTTAT-T
1 TTTTA-TAAAATTTTATATATATTTTATAATT--TTTTTATAT
8806276 TTTTATA
1 TTTTATA
8806283 TGTTTTACCA
Statistics
Matches: 96, Mismatches: 20, Indels: 23
0.69 0.14 0.17
Matches are distributed among these distances:
38 6 0.06
39 29 0.30
40 26 0.27
41 32 0.33
42 3 0.03
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (40 bp):
TTTTATAAAATTTTATATATATTTTATAATTTTTTTATAT
Found at i:8806189 original size:11 final size:11
Alignment explanation
Indices: 8806117--8806189 Score: 50
Period size: 11 Copynumber: 7.1 Consensus size: 11
8806107 ATTTATAAAA
8806117 TTTTATAATTT
1 TTTTATAATTT
* *
8806128 TTATAT-A-TA
1 TTTTATAATTT
8806137 TTTTATAATTT
1 TTTTATAATTT
8806148 TTTTAT-A--T
1 TTTTATAATTT
**
8806156 TTTTATAA-AA
1 TTTTATAATTT
*
8806166 TTTTACAATTTT
1 TTTTATAA-TTT
8806178 TTTTATAATTT
1 TTTTATAATTT
8806189 T
1 T
8806190 CTAAAATTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
8 7 0.15
9 7 0.15
10 10 0.21
11 16 0.34
12 7 0.15
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:8806197 original size:22 final size:22
Alignment explanation
Indices: 8806155--8806200 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
8806145 TTTTTTTATA
*
8806155 TTTTTATAAAATTTTACAATTT
1 TTTTTATAAAATTTTAAAATTT
*
8806177 TTTTTAT-AATTTTCTAAAATTT
1 TTTTTATAAAATTT-TAAAATTT
8806199 TT
1 TT
8806201 AAAATTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTTATAAAATTTTAAAATTT
Found at i:8806200 original size:49 final size:49
Alignment explanation
Indices: 8806108--8806250 Score: 128
Period size: 49 Copynumber: 2.9 Consensus size: 49
8806098 TTCTTATGAA
* **
8806108 TTTATAAAATTTTATAATTTTTATATATATTTTATAATTTTTTTATATT
1 TTTATAAAATTTTACAATTTTTATATATATTTTATAAAATTTTTATATT
* * *
8806157 TTTATAAAATTTTACAATTTTT-TTTATAATTTTCTAAAATTTTTAAAATT
1 TTTATAAAATTTTACAATTTTTATATAT-ATTTTATAAAATTTTT-ATATT
* * * * *
8806207 CTTTCT-AATTTTTAATAATTTTTATATTTTTTTTATTAAAATTT
1 -TTTATAAAATTTT-ACAATTTTTATATATATTTTA-TAAAATTT
8806251 AATAATTTAA
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
48 4 0.05
49 34 0.45
50 10 0.13
51 16 0.21
52 11 0.15
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (49 bp):
TTTATAAAATTTTACAATTTTTATATATATTTTATAAAATTTTTATATT
Found at i:8806239 original size:20 final size:20
Alignment explanation
Indices: 8806044--8806239 Score: 76
Period size: 19 Copynumber: 9.9 Consensus size: 20
8806034 TTTTGGTACT
*
8806044 ATAATTTTTATAATTATTTT-
1 ATAATTTTTAT-ATTTTTTTA
* *
8806064 ATAAATTTTATATTTCTTTA
1 ATAATTTTTATATTTTTTTA
*
8806084 CAT--TTTTTATAATTTTCTT-
1 -ATAATTTTTAT-ATTTTTTTA
***
8806103 ATGAA--TTTATAAAATTTT-
1 AT-AATTTTTATATTTTTTTA
8806121 ATAATTTTTATATATATTTTATA
1 ATAATTTTTATAT-T-TTTT-TA
* *
8806144 AT-TTTTTTATATTTTTATA
1 ATAATTTTTATATTTTTTTA
* *
8806163 A-AA-TTTTACAATTTTTTTT
1 ATAATTTTTA-TATTTTTTTA
**
8806182 ATAATTTTCTA-AAATTTTTA
1 ATAATTTT-TATATTTTTTTA
* *
8806202 A-AATTCTTTCTA-ATTTTTA
1 ATAATT-TTTATATTTTTTTA
8806221 ATAATTTTTATATTTTTTT
1 ATAATTTTTATATTTTTTT
8806240 TATTAAAATT
Statistics
Matches: 130, Mismatches: 25, Indels: 42
0.66 0.13 0.21
Matches are distributed among these distances:
17 2 0.02
18 13 0.10
19 52 0.40
20 40 0.31
21 9 0.07
22 12 0.09
23 2 0.02
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.63
Consensus pattern (20 bp):
ATAATTTTTATATTTTTTTA
Found at i:8806367 original size:13 final size:12
Alignment explanation
Indices: 8806349--8806387 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
8806339 GTTAGGGGTG
8806349 GTTAACTTTAACA
1 GTTAACTTTAA-A
8806362 GTTAACTGTTAAA
1 GTTAACT-TTAAA
*
8806375 GTTAACATTAAA
1 GTTAACTTTAAA
8806387 G
1 G
8806388 GGTCTTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 6 0.25
13 14 0.58
14 4 0.17
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (12 bp):
GTTAACTTTAAA
Found at i:8809236 original size:18 final size:17
Alignment explanation
Indices: 8809213--8809247 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8809203 TTGCCGGTAG
8809213 ATACATGCATATGGATGC
1 ATACATGCATA-GGATGC
*
8809231 ATACATGCTTAGGATGC
1 ATACATGCATAGGATGC
8809248 CATTTCCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (17 bp):
ATACATGCATAGGATGC
Found at i:8819803 original size:13 final size:13
Alignment explanation
Indices: 8819785--8819810 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8819775 AAAGAGATTT
8819785 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
8819798 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
8819811 AAATTTGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
GTTTTCTAGTAAA
Found at i:8819881 original size:19 final size:20
Alignment explanation
Indices: 8819844--8819883 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
8819834 TCTTTTCGCA
* *
8819844 TTCATTTCATGCATTTGCAT
1 TTCATTACATGCATATGCAT
8819864 TTCATTACAT-CATATGCAT
1 TTCATTACATGCATATGCAT
8819883 T
1 T
8819884 AAACACAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.47
Consensus pattern (20 bp):
TTCATTACATGCATATGCAT
Found at i:8821780 original size:20 final size:20
Alignment explanation
Indices: 8821755--8821792 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8821745 AATGTTCTTT
8821755 CATTCTTTACGATTTTTTTC
1 CATTCTTTACGATTTTTTTC
**
8821775 CATTCTTTTGGATTTTTT
1 CATTCTTTACGATTTTTT
8821793 CTGCCAAACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.08, T:0.63
Consensus pattern (20 bp):
CATTCTTTACGATTTTTTTC
Found at i:8822701 original size:7 final size:7
Alignment explanation
Indices: 8822689--8822731 Score: 61
Period size: 7 Copynumber: 6.1 Consensus size: 7
8822679 AAATGACGAG
8822689 ATGAAAA
1 ATGAAAA
8822696 ATGAAAA
1 ATGAAAA
8822703 AGTG-AAA
1 A-TGAAAA
8822710 ATGAAAA
1 ATGAAAA
*
8822717 CTGAAAA
1 ATGAAAA
8822724 ATGAAAA
1 ATGAAAA
8822731 A
1 A
8822732 GTAAAATAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 2 0.06
7 28 0.88
8 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.16, T:0.14
Consensus pattern (7 bp):
ATGAAAA
Found at i:8822710 original size:14 final size:14
Alignment explanation
Indices: 8822693--8822738 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
8822683 GACGAGATGA
8822693 AAAATGAAAAAGTG
1 AAAATGAAAAAGTG
*
8822707 AAAATG-AAAACTG
1 AAAATGAAAAAGTG
8822720 AAAAATGAAAAAGT-
1 -AAAATGAAAAAGTG
8822734 AAAAT
1 AAAAT
8822739 AGAGAGGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 11 0.39
14 12 0.43
15 5 0.18
ACGTcount: A:0.67, C:0.02, G:0.15, T:0.15
Consensus pattern (14 bp):
AAAATGAAAAAGTG
Found at i:8822731 original size:21 final size:21
Alignment explanation
Indices: 8822689--8822730 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8822679 AAATGACGAG
8822689 ATGAAAAATGAAAAAGTGAAA
1 ATGAAAAATGAAAAAGTGAAA
*
8822710 ATGAAAACTGAAAAA-TGAAA
1 ATGAAAAATGAAAAAGTGAAA
8822730 A
1 A
8822731 AGTAAAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.67, C:0.02, G:0.17, T:0.14
Consensus pattern (21 bp):
ATGAAAAATGAAAAAGTGAAA
Found at i:8824120 original size:89 final size:89
Alignment explanation
Indices: 8824012--8825055 Score: 1674
Period size: 89 Copynumber: 11.7 Consensus size: 89
8824002 GGTTAAAAAA
* *
8824012 AAGAAAGCAGATATTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCCTGTCTTC
1 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
8824077 CCATACTGGTGGCGAAACAGATCG
66 CCATACTGGTGGCGAAACAGATCG
*
8824101 AAGAAAGCAGATCTTGTCTTCATGTACTGTCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
1 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
8824166 CCATACTGGTGGCGAAACAGATCG
66 CCATACTGGTGGCGAAACAGATCG
8824190 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
1 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
8824255 CCATACTGGTGGCGAAACAGATCG
66 CCATACTGGTGGCGAAACAGATCG
* *
8824279 AAGAAAGCGGATATTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
1 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
*
8824344 CCATACTAGTGGCGAAACAGATCG
66 CCATACTGGTGGCGAAACAGATCG
* * *
8824368 AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGGTAACAGATCTTGTTTTC
1 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
8824433 CCATACTGGTGGCGAAACAGATCG
66 CCATACTGGTGGCGAAACAGATCG
* *
8824457 AAGAAAGTAGATCTTGTCTTCATGTACTGGCGTGAAATAGATCAAAGATAACAGATCTTGTCTTC
1 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
8824522 CCATACTGGTGGCGAAACAGATCG
66 CCATACTGGTGGCGAAACAGATCG
8824546 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
1 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
*
8824611 CCATACTGGTGGCGAAATAGATCG
66 CCATACTGGTGGCGAAACAGATCG
*
8824635 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAAATCAAAGATAACAGATCTTGTCTTC
1 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
**
8824700 CCATACTGGTGGCGAAGTAGATCG
66 CCATACTGGTGGCGAAACAGATCG
8824724 AAGGAAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTC
1 AA-G--AAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTC
* ** **
8824789 TTCCCATATTGGTGAAGAAGTAGATCG
63 TTCCCATACTGGTGGCGAAACAGATCG
* * *
8824816 AAGGAAAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGACAACAGATATTGTC
1 AA-G--AAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTC
* * * ** *
8824881 TCCCCATACTGGTGGTGGAGTAGATCA
63 TTCCCATACTGGTGGCGAAACAGATCG
** *
8824908 AAGAAAATAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACAGATCTTGTCTTC
1 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
* **
8824973 CCATGCTGGTGGCGAAGTAGATCG
66 CCATACTGGTGGCGAAACAGATCG
* ** * *
8824997 AAAAAAATAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCGAAGATTACAGATCTT
1 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTT
8825056 ATCTCGATAA
Statistics
Matches: 903, Mismatches: 49, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
89 734 0.81
90 1 0.00
91 1 0.00
92 167 0.18
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (89 bp):
AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
CCATACTGGTGGCGAAACAGATCG
Done.