Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 32 of 208
Found at i:9159596 original size:52 final size:51
Alignment explanation
Indices: 9159486--9159596 Score: 127
Period size: 52 Copynumber: 2.1 Consensus size: 51
9159476 ATTTGAATTT
** *
9159486 TTTTTATGAAAATACGGGAATTTTTTGAAAAAATGAAAAATTTTGAAACACGAG
1 TTTTT-TGAAAATACGAAAATTTTTT--AAAAACGAAAAATTTTGAAACACGAG
*
9159540 -TTTTTGAAAATACGAAAATTTTTT-AAAACGCAAAAATTTTTAAACACGAG
1 TTTTTTGAAAATACGAAAATTTTTTAAAAACG-AAAAATTTTGAAACACGAG
9159590 ATTTTTT
1 -TTTTTT
9159597 TTAAAACACG
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
49 5 0.10
50 18 0.36
52 23 0.46
53 4 0.08
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (51 bp):
TTTTTTGAAAATACGAAAATTTTTTAAAAACGAAAAATTTTGAAACACGAG
Found at i:9159598 original size:19 final size:21
Alignment explanation
Indices: 9159576--9159626 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 21
9159566 AACGCAAAAA
9159576 TTTTTAAACACG-AGAT-TTT
1 TTTTTAAACACGAAGATATTT
* *
9159595 TTTTAAAACACGAATATATTT
1 TTTTTAAACACGAAGATATTT
9159616 TTTTTGAAACA
1 TTTTT-AAACA
9159627 TGGGAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 11 0.42
20 3 0.12
21 7 0.27
22 5 0.19
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (21 bp):
TTTTTAAACACGAAGATATTT
Found at i:9159669 original size:17 final size:17
Alignment explanation
Indices: 9159647--9159690 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
9159637 ATTATTATTT
9159647 TTTTGAAACACGAGAAA-
1 TTTTGAAACACGA-AAAC
*
9159664 TTTTGAAAACATGAAAAC
1 TTTTG-AAACACGAAAAC
9159682 TTTTGAAAC
1 TTTTGAAAC
9159691 CCGATTAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (17 bp):
TTTTGAAACACGAAAAC
Found at i:9159673 original size:18 final size:18
Alignment explanation
Indices: 9159647--9159689 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
9159637 ATTATTATTT
9159647 TTTTG-AAACACGAGAAA-
1 TTTTGAAAACACGA-AAAC
*
9159664 TTTTGAAAACATGAAAAC
1 TTTTGAAAACACGAAAAC
9159682 TTTTGAAA
1 TTTTGAAA
9159690 CCCGATTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (18 bp):
TTTTGAAAACACGAAAAC
Found at i:9159809 original size:21 final size:22
Alignment explanation
Indices: 9159784--9159826 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
9159774 AGATTCTAAT
9159784 AAAACACG-AGAATTTTTATTA
1 AAAACACGAAGAATTTTTATTA
*
9159805 AAAACACGAAGATTTTTTATTA
1 AAAACACGAAGAATTTTTATTA
9159827 TATATTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (22 bp):
AAAACACGAAGAATTTTTATTA
Found at i:9160286 original size:10 final size:10
Alignment explanation
Indices: 9160268--9160332 Score: 53
Period size: 10 Copynumber: 6.4 Consensus size: 10
9160258 ACTTTTTTAT
9160268 TTTCTTTTTTC
1 TTTC-TTTTTC
*
9160279 TTTATTTTTC
1 TTTCTTTTTC
**
9160289 ACTCTTTTTC
1 TTTCTTTTTC
9160299 TTTCTTCTTTC
1 TTTCTT-TTTC
*
9160310 -TTCTTGTTCC
1 TTTCTT-TTTC
9160320 TTT-TTTTTC
1 TTTCTTTTTC
9160329 TTTC
1 TTTC
9160333 AAGCCCTAGC
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
9 6 0.14
10 27 0.64
11 9 0.21
ACGTcount: A:0.03, C:0.22, G:0.02, T:0.74
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:9160435 original size:16 final size:14
Alignment explanation
Indices: 9160414--9160456 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
9160404 GCCTTCTATT
9160414 CTTTTCTTCCTTCCTC
1 CTTTTCTT-CTT-CTC
*
9160430 CTTTTCTTCTTTTC
1 CTTTTCTTCTTCTC
9160444 CTTTTC-TCTTCTC
1 CTTTTCTTCTTCTC
9160457 TTTCCCCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 6 0.24
14 8 0.32
15 3 0.12
16 8 0.32
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (14 bp):
CTTTTCTTCTTCTC
Found at i:9160467 original size:18 final size:17
Alignment explanation
Indices: 9160424--9160469 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
9160414 CTTTTCTTCC
9160424 TTCCTCCTTT-TCTTCTT
1 TTCC-CCTTTCTCTTCTT
*
9160441 TT-CCTTTTCTCTTCTCT
1 TTCCCCTTTCTCTTCT-T
9160458 TTCCCCTTTCTC
1 TTCCCCTTTCTC
9160470 CCCTTCCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
15 4 0.17
16 7 0.29
17 5 0.21
18 8 0.33
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (17 bp):
TTCCCCTTTCTCTTCTT
Found at i:9161682 original size:19 final size:19
Alignment explanation
Indices: 9161658--9161707 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
9161648 AAATGAGAAA
9161658 GTGAATTGTG-AATTGATAT
1 GTGAATT-TGAAATTGATAT
9161677 GTGAATTTGAAATTGATAT
1 GTGAATTTGAAATTGATAT
*
9161696 ATGAGATTTGAA
1 GTGA-ATTTGAA
9161708 GATATGAACC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 2 0.07
19 19 0.68
20 7 0.25
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (19 bp):
GTGAATTTGAAATTGATAT
Found at i:9166951 original size:14 final size:15
Alignment explanation
Indices: 9166922--9166954 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
9166912 AAATATAAAC
9166922 ATACAATTGAAACAA
1 ATACAATTGAAACAA
*
9166937 ATACAATT-CAACAA
1 ATACAATTGAAACAA
9166951 ATAC
1 ATAC
9166955 TTTAGTAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.58, C:0.18, G:0.03, T:0.21
Consensus pattern (15 bp):
ATACAATTGAAACAA
Found at i:9178100 original size:7 final size:7
Alignment explanation
Indices: 9178086--9178137 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
9178076 TTTAATTTTT
9178086 AACCCTA
1 AACCCTA
*
9178093 AACTCTA
1 AACCCTA
9178100 AACCCTA
1 AACCCTA
**
9178107 AACATTAA
1 AACCCT-A
9178115 AACCCTA
1 AACCCTA
*
9178122 AACCTTA
1 AACCCTA
*
9178129 AAACCTA
1 AACCCTA
9178136 AA
1 AA
9178138 AACGGGCAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
7 30 0.86
8 5 0.14
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (7 bp):
AACCCTA
Found at i:9178119 original size:15 final size:14
Alignment explanation
Indices: 9178086--9178137 Score: 63
Period size: 14 Copynumber: 3.6 Consensus size: 14
9178076 TTTAATTTTT
9178086 AACCCTAAACTCT-A
1 AACCCTAAACT-TAA
9178100 AACCCTAAACATTAA
1 AACCCTAAAC-TTAA
9178115 AACCCTAAACCTTAA
1 AACCCTAAA-CTTAA
9178130 AA-CCTAAA
1 AACCCTAAA
9178138 AACGGGCAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
14 17 0.49
15 17 0.49
16 1 0.03
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (14 bp):
AACCCTAAACTTAA
Found at i:9182175 original size:30 final size:32
Alignment explanation
Indices: 9182139--9182204 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 32
9182129 TTTAGAAAAT
9182139 ATTAATACAAAT-CCTT-AA-AAAATAGGATTG
1 ATTAATAC-AATCCCTTGAAGAAAATAGGATTG
* *
9182169 ATTAATACAATCCCTTGAAGAAATTAGGTTTG
1 ATTAATACAATCCCTTGAAGAAAATAGGATTG
9182201 ATTA
1 ATTA
9182205 GAAATTTATC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 3 0.10
30 12 0.39
31 2 0.06
32 14 0.45
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (32 bp):
ATTAATACAATCCCTTGAAGAAAATAGGATTG
Found at i:9183737 original size:30 final size:30
Alignment explanation
Indices: 9183703--9183766 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
9183693 TGGCCAAGCT
* *
9183703 GTGTGGCTCACACGGCCAAGAGACATGCCC
1 GTGTGGCTCACACGGCAAAGAGACACGCCC
*
9183733 GTGTGGCTCACACGGCAAAGAGATACGCCC
1 GTGTGGCTCACACGGCAAAGAGACACGCCC
9183763 GTGT
1 GTGT
9183767 CTTAGGTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.23, C:0.30, G:0.31, T:0.16
Consensus pattern (30 bp):
GTGTGGCTCACACGGCAAAGAGACACGCCC
Found at i:9184779 original size:21 final size:21
Alignment explanation
Indices: 9184755--9184795 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9184745 AAGGATTAAA
9184755 CAGAAGCTCAAAAGAGCTGAG
1 CAGAAGCTCAAAAGAGCTGAG
* *
9184776 CAGAAGCTCATAGGAGCTGA
1 CAGAAGCTCAAAAGAGCTGA
9184796 ATGGAAACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.20, G:0.29, T:0.12
Consensus pattern (21 bp):
CAGAAGCTCAAAAGAGCTGAG
Found at i:9184871 original size:21 final size:21
Alignment explanation
Indices: 9184735--9184871 Score: 62
Period size: 21 Copynumber: 6.5 Consensus size: 21
9184725 AGTGCTAAAT
* ** *
9184735 AGAAACCCATAAGGATTAAAC
1 AGAAACTCATAAGGGCTGAAC
* * * *
9184756 AGAAGCTCAAAAGAGCTGAGC
1 AGAAACTCATAAGGGCTGAAC
* *
9184777 AGAAGCTCAT-AGGAGCTGAAT
1 AGAAACTCATAAGG-GCTGAAC
* * * * *
9184798 GGAAACCCTTAAGGGTTAAAC
1 AGAAACTCATAAGGGCTGAAC
* * * *
9184819 AGAAGCTTAAAAGAGCTGAAC
1 AGAAACTCATAAGGGCTGAAC
*
9184840 AGAAA-TCCATAAGGGTTGAAC
1 AGAAACT-CATAAGGGCTGAAC
9184861 AGAAACTCATA
1 AGAAACTCATA
9184872 TAAGTTAACA
Statistics
Matches: 79, Mismatches: 33, Indels: 8
0.66 0.28 0.07
Matches are distributed among these distances:
20 3 0.04
21 72 0.91
22 4 0.05
ACGTcount: A:0.45, C:0.17, G:0.23, T:0.16
Consensus pattern (21 bp):
AGAAACTCATAAGGGCTGAAC
Found at i:9188537 original size:25 final size:26
Alignment explanation
Indices: 9188509--9188557 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
9188499 ACATACCGTA
9188509 GCTC-TTATGAGCGTCCCGATATATG
1 GCTCTTTATGAGCGTCCCGATATATG
* *
9188534 GCTCTTTATGAGCTTCCTGATATA
1 GCTCTTTATGAGCGTCCCGATATA
9188558 GCTCACTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GCTCTTTATGAGCGTCCCGATATATG
Found at i:9188597 original size:25 final size:24
Alignment explanation
Indices: 9188543--9188617 Score: 66
Period size: 25 Copynumber: 3.1 Consensus size: 24
9188533 GGCTCTTTAT
9188543 GAGCTTCCTGAT-ATAGCTCACTT--
1 GAGCTTCCTGATAATAGCT-A-TTCG
* *
9188566 GAACTTCCTGATATATGGCTATTCG
1 GAGCTTCCTGATA-ATAGCTATTCG
* *
9188591 GAGCTTCTTGATAATAGCTCTTCG
1 GAGCTTCCTGATAATAGCTATTCG
9188615 GAG
1 GAG
9188618 TTACCCGTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
23 13 0.31
24 13 0.31
25 16 0.38
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (24 bp):
GAGCTTCCTGATAATAGCTATTCG
Found at i:9198200 original size:18 final size:18
Alignment explanation
Indices: 9198177--9198214 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
9198167 TTTAGTTAAG
*
9198177 TCTTTCATT-AAGTGTTTT
1 TCTTTC-TTCAAGTATTTT
9198195 TCTTTCTTCAAGTATTTT
1 TCTTTCTTCAAGTATTTT
9198213 TC
1 TC
9198215 ATTTAGTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.61
Consensus pattern (18 bp):
TCTTTCTTCAAGTATTTT
Found at i:9198330 original size:12 final size:11
Alignment explanation
Indices: 9198224--9198326 Score: 55
Period size: 12 Copynumber: 8.5 Consensus size: 11
9198214 CATTTAGTTC
9198224 TTTTATCAAGT
1 TTTTATCAAGT
9198235 TTTTAATTACCAAGT
1 TTTT-A-T--CAAGT
9198250 TTTCTATCAAGT
1 TTT-TATCAAGT
*
9198262 TTTGTAGCAAGT
1 TTT-TATCAAGT
*
9198274 TCTTT-TTAAGT
1 T-TTTATCAAGT
9198285 TTTTCATCAAGT
1 TTTT-ATCAAGT
* *
9198297 CTTTTCATAAAAT
1 -TTTT-ATCAAGT
*
9198310 TTTCCATCAAGT
1 TTT-TATCAAGT
9198322 TTTTA
1 TTTTA
9198327 ATCATTTCTT
Statistics
Matches: 71, Mismatches: 11, Indels: 20
0.70 0.11 0.20
Matches are distributed among these distances:
10 3 0.04
11 10 0.14
12 34 0.48
13 13 0.18
14 1 0.01
15 9 0.13
16 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.09, T:0.50
Consensus pattern (11 bp):
TTTTATCAAGT
Found at i:9207596 original size:16 final size:16
Alignment explanation
Indices: 9207575--9207606 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9207565 GTGGGGGAAT
*
9207575 GTCGAGATTAGAAGAA
1 GTCGAGATTAAAAGAA
9207591 GTCGAGATTAAAAGAA
1 GTCGAGATTAAAAGAA
9207607 ATATGTTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.28, T:0.19
Consensus pattern (16 bp):
GTCGAGATTAAAAGAA
Found at i:9207676 original size:94 final size:94
Alignment explanation
Indices: 9207497--9207684 Score: 277
Period size: 94 Copynumber: 2.0 Consensus size: 94
9207487 TGTGGGAAGT
* *
9207497 GTCGATATTAGAAGAAATATGTTGTAATCTTTGACCTTAAGTAATTGATATTAAAATCCAGTTAA
1 GTCGAGATTAAAAGAAATATGTTGTAATCTTTGACCTTAAGTAATTGATATTAAAATCCAGTTAA
* * * *
9207562 CTTGTGGGGGAATGTCGAGATTAGAAGAA
66 CTTATGGGAGAATGTAGAGATTAAAAGAA
** * *
9207591 GTCGAGATTAAAAGAAATATGTTGTAATCTTTGACCTTAAGTAATTGATATTAATGTCTAGTTAG
1 GTCGAGATTAAAAGAAATATGTTGTAATCTTTGACCTTAAGTAATTGATATTAAAATCCAGTTAA
*
9207656 CTTATGGGAGAGTGTAGAGATTAAAAGAA
66 CTTATGGGAGAATGTAGAGATTAAAAGAA
9207685 ATCTTTGACC
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 83 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (94 bp):
GTCGAGATTAAAAGAAATATGTTGTAATCTTTGACCTTAAGTAATTGATATTAAAATCCAGTTAA
CTTATGGGAGAATGTAGAGATTAAAAGAA
Found at i:9207700 original size:68 final size:70
Alignment explanation
Indices: 9207616--9207981 Score: 272
Period size: 78 Copynumber: 4.9 Consensus size: 70
9207606 AATATGTTGT
* * *
9207616 AATCTTTGACCTTAAGTAATTGATATTAATG-TCTAGTTAGCTTATGGGAGAGTGTAGAGATT-A
1 AATCTTTGACCTTAAGTAATTGATATTAA-GATCCAGTTAACTTATGGGAGAGTGTCGAGATTAA
9207679 AAA-GA
65 AAATGA
* * * *
9207684 AATCTTTGACCTTAAGTAATTGATATTAGGATCTAGTTAACTTGTGGGGGAGTGTCGAGATTAGA
1 AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTATGGGAGAGTGTCGAGATT--A
*
9207749 AGAAATTTGTTGT
64 A-AAA-----TGA
* *
9207762 AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTGTGGGGGAGTGTCGAGATTAGA
1 AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTATGGGAGAGTGTCGAGATT---
*
9207827 AGAAATATGTTGT
63 A-AAA-A---TGA
* * * *
9207840 AATCTTTGACCTTAATTAATTGATATTAAAATCCAGTTAGCTTATGGGAGAGTATCGAGATTAAA
1 AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTATGGGAGAGTGTCGAGATT---
*
9207905 AGAAATATGTTGT
63 A-AAA-A---TGA
* * * * * * *
9207918 AATATTTGACCTTCAGTAATTTATATTAGGATCCAATTAACTTGTGGG-GAATGTCGAGATTAAA
1 AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTATGGGAGAGTGTCGAGATTAAA
9207982 TGAAATATGT
Statistics
Matches: 256, Mismatches: 28, Indels: 23
0.83 0.09 0.07
Matches are distributed among these distances:
67 1 0.00
68 55 0.21
71 1 0.00
72 3 0.01
73 2 0.01
74 1 0.00
77 11 0.04
78 177 0.69
79 3 0.01
80 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.36
Consensus pattern (70 bp):
AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTATGGGAGAGTGTCGAGATTAAA
AATGA
Found at i:9207742 original size:162 final size:164
Alignment explanation
Indices: 9207420--9207752 Score: 440
Period size: 162 Copynumber: 2.0 Consensus size: 164
9207410 GTGGGGGAGT
*
9207420 GTCGAGGTTAAAAGAAATATGTTGTAACCTTTGACCTTAACTAATTGATATTAGGATCTAGTTAA
1 GTCGAGATTAAAAGAAATATGTTGTAACCTTTGACCTTAACTAATTGATATTAGGATCTAGTTAA
* * * *
9207485 CTTGTGGGAAGTGTCGATATTAGAAGAAATATGTTGTAATCTTTGACCTTAAGTAATTGATATTA
66 CTTATGGGAAGTGTAGAGATT---A-AAATA---TGAAATCTTTGACCTTAAGTAATTGATATTA
9207550 AAATCCAGTTAACTTGTGGGGGAATGTCGAGATTAGAAGAA
124 AAATCCAGTTAACTTGTGGGGGAATGTCGAGATTAGAAGAA
* * *
9207591 GTCGAGATTAAAAGAAATATGTTGTAATCTTTGACCTTAAGTAATTGATATTAATG-TCTAGTTA
1 GTCGAGATTAAAAGAAATATGTTGTAACCTTTGACCTTAACTAATTGATATT-AGGATCTAGTTA
* **
9207655 GCTTATGGGAGAGTGTAGAGATT-AAA-A-GAAATCTTTGACCTTAAGTAATTGATATTAGGATC
65 ACTTATGGGA-AGTGTAGAGATTAAAATATGAAATCTTTGACCTTAAGTAATTGATATTAAAATC
* *
9207717 TAGTTAACTTGTGGGGGAGTGTCGAGATTAGAAGAA
129 CAGTTAACTTGTGGGGGAATGTCGAGATTAGAAGAA
9207753 ATTTGTTGTA
Statistics
Matches: 147, Mismatches: 13, Indels: 13
0.85 0.08 0.08
Matches are distributed among these distances:
162 66 0.45
166 1 0.01
167 3 0.02
171 65 0.44
172 12 0.08
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.34
Consensus pattern (164 bp):
GTCGAGATTAAAAGAAATATGTTGTAACCTTTGACCTTAACTAATTGATATTAGGATCTAGTTAA
CTTATGGGAAGTGTAGAGATTAAAATATGAAATCTTTGACCTTAAGTAATTGATATTAAAATCCA
GTTAACTTGTGGGGGAATGTCGAGATTAGAAGAA
Found at i:9207813 original size:78 final size:78
Alignment explanation
Indices: 9207684--9208007 Score: 472
Period size: 78 Copynumber: 4.2 Consensus size: 78
9207674 GATTAAAAGA
* *
9207684 AATCTTTGACCTTAAGTAATTGATATTAGGATCTAGTTAACTTGTGGGGGAGTGTCGAGATTAGA
1 AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTGTGGGGGAGTGTCGAGATTAGA
*
9207749 AGAAATTTGTTGT
66 AGAAATATGTTGT
9207762 AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTGTGGGGGAGTGTCGAGATTAGA
1 AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTGTGGGGGAGTGTCGAGATTAGA
9207827 AGAAATATGTTGT
66 AGAAATATGTTGT
* * * * * * *
9207840 AATCTTTGACCTTAATTAATTGATATTAAAATCCAGTTAGCTTATGGGAGAGTATCGAGATTAAA
1 AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTGTGGGGGAGTGTCGAGATTAGA
9207905 AGAAATATGTTGT
66 AGAAATATGTTGT
* * * * * *
9207918 AATATTTGACCTTCAGTAATTTATATTAGGATCCAATTAACTTGT-GGGGAATGTCGAGATTA-A
1 AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTGTGGGGGAGTGTCGAGATTAGA
9207981 ATGAAATATGTTGT
66 A-GAAATATGTTGT
*
9207995 AATATTTGACCTT
1 AATCTTTGACCTT
9208008 TTAAGTATTT
Statistics
Matches: 223, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
76 2 0.01
77 39 0.17
78 182 0.82
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (78 bp):
AATCTTTGACCTTAAGTAATTGATATTAAGATCCAGTTAACTTGTGGGGGAGTGTCGAGATTAGA
AGAAATATGTTGT
Found at i:9211956 original size:17 final size:18
Alignment explanation
Indices: 9211930--9211963 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
9211920 GACTGAACCA
*
9211930 ATTTTTAAATT-TTTATG
1 ATTTTAAAATTATTTATG
9211947 ATTTTAAAATTATTTAT
1 ATTTTAAAATTATTTAT
9211964 TTAATTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
ATTTTAAAATTATTTATG
Found at i:9212528 original size:18 final size:17
Alignment explanation
Indices: 9212498--9212531 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9212488 CTCATCGTTT
*
9212498 CTTTTTTTTTTCTTTTC
1 CTTTTTTTGTTCTTTTC
9212515 CTTTTTTTCGTTCTTTT
1 CTTTTTTT-GTTCTTTT
9212532 GGCGTTGTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (17 bp):
CTTTTTTTGTTCTTTTC
Found at i:9217094 original size:31 final size:31
Alignment explanation
Indices: 9217034--9217097 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
9217024 TTACTCTTTG
* * *
9217034 AACTTGATAATTGTTCTTATATTAGTGCCTA
1 AACTTGACAATTGTTCTCACATTAGTGCCTA
9217065 AACTTGACAATTGTTCTCACATT-GATGCCTA
1 AACTTGACAATTGTTCTCACATTAG-TGCCTA
9217096 AA
1 AA
9217098 TTTTAGGGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.39
Consensus pattern (31 bp):
AACTTGACAATTGTTCTCACATTAGTGCCTA
Found at i:9222813 original size:14 final size:14
Alignment explanation
Indices: 9222794--9222834 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
9222784 CAAAAGAAAG
9222794 AAGAAAAGGAAAAA
1 AAGAAAAGGAAAAA
9222808 AAGAAAAGGAAAAA
1 AAGAAAAGGAAAAA
9222822 AAGAAAA-GAAAAA
1 AAGAAAAGGAAAAA
9222835 GAAACAGTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.22
14 21 0.78
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AAGAAAAGGAAAAA
Found at i:9225911 original size:2 final size:2
Alignment explanation
Indices: 9225898--9225928 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
9225888 CTTAAATGCT
*
9225898 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9225929 CAACTTATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9227478 original size:78 final size:78
Alignment explanation
Indices: 9227344--9227770 Score: 613
Period size: 78 Copynumber: 5.5 Consensus size: 78
9227334 AAATACTTAA
* * * * *
9227344 AAGGTCAAATATTACAACA-ATTTTTTTTAATCTCGACATTCCCCCACAAGTTAATTGGATCCTA
1 AAGGTCAAAGATTACAACATATTTCTTTTAATCTCGACACTCCCCCACAAGTTAACTGGATCTTA
*
9227408 ATATAAATTACTT
66 ATATCAATTACTT
* * * * * * * *
9227421 AAGGTCAAATACTACAACATATTTCTTTTAATCTCGATACTCTCCCATAAGCTAATTGGATTTTA
1 AAGGTCAAAGATTACAACATATTTCTTTTAATCTCGACACTCCCCCACAAGTTAACTGGATCTTA
*
9227486 ATATCAATTAATT
66 ATATCAATTACTT
*
9227499 AAGGTCAAAGATTACAACATATTTCTTCTAATCTCGACACTCCCCCACAAGTTAACTGGATCTTA
1 AAGGTCAAAGATTACAACATATTTCTTTTAATCTCGACACTCCCCCACAAGTTAACTGGATCTTA
*
9227564 AAATCAATTACTT
66 ATATCAATTACTT
* * * * *
9227577 AAGGTCAAAGATTACAACAAATTTCTTCTAATCTTGACACTCCCCCACAAGTTAACTAGATCCTA
1 AAGGTCAAAGATTACAACATATTTCTTTTAATCTCGACACTCCCCCACAAGTTAACTGGATCTTA
9227642 ATATCAATTACTT
66 ATATCAATTACTT
* * * *
9227655 AAGGTCAAAGATTTCAACATATTTCTTTTAATCTCTACACTCCCCCATAAGCTAACTGGATCTTA
1 AAGGTCAAAGATTACAACATATTTCTTTTAATCTCGACACTCCCCCACAAGTTAACTGGATCTTA
9227720 ATATCAATTACTT
66 ATATCAATTACTT
9227733 AAGGTCAAAGATTACAACATATTTCTTTTAATCTCGAC
1 AAGGTCAAAGATTACAACATATTTCTTTTAATCTCGAC
9227771 TTCTTCTAAT
Statistics
Matches: 311, Mismatches: 38, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
77 18 0.06
78 293 0.94
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (78 bp):
AAGGTCAAAGATTACAACATATTTCTTTTAATCTCGACACTCCCCCACAAGTTAACTGGATCTTA
ATATCAATTACTT
Found at i:9227657 original size:156 final size:156
Alignment explanation
Indices: 9227344--9227957 Score: 737
Period size: 156 Copynumber: 3.8 Consensus size: 156
9227334 AAATACTTAA
* * * * *
9227344 AAGGTCAAATATTACAACA-ATTTTTTTTAATCTCGACATTCCCCCACAAGTTAATTGGATCCTA
1 AAGGTCAAAGATTACAACATATTTCTTCTAATCTCGACACTCCCCCACAAGTTAACTGGATCCTA
* * * * * * * * *
9227408 ATATAAATTACTTAAGGTCAAATACTACAACATATTTCTTTTAATCTCGATACTCTCCCATAAGC
66 ATATCAATTACTTAAGGTCAAAGATTACAACAAATTTCTTCTAATCTCGACACTCCCCCACAAGT
* *
9227473 TAATTGGATTTTAATATCAATTAATT
131 TAACTGGATTTTAATATCAATTACTT
*
9227499 AAGGTCAAAGATTACAACATATTTCTTCTAATCTCGACACTCCCCCACAAGTTAACTGGATCTTA
1 AAGGTCAAAGATTACAACATATTTCTTCTAATCTCGACACTCCCCCACAAGTTAACTGGATCCTA
* *
9227564 AAATCAATTACTTAAGGTCAAAGATTACAACAAATTTCTTCTAATCTTGACACTCCCCCACAAGT
66 ATATCAATTACTTAAGGTCAAAGATTACAACAAATTTCTTCTAATCTCGACACTCCCCCACAAGT
* **
9227629 TAACTAGATCCTAATATCAATTACTT
131 TAACTGGATTTTAATATCAATTACTT
* * * * * *
9227655 AAGGTCAAAGATTTCAACATATTTCTTTTAATCTCTACACTCCCCCATAAGCTAACTGGATCTTA
1 AAGGTCAAAGATTACAACATATTTCTTCTAATCTCGACACTCCCCCACAAGTTAACTGGATCCTA
9227720 ATATCAATTACTTAAGGTCAAAGATTACAACATATTTCTTTTAATCTCGACTTCTTCTAATCTCG
66 ATATCAATTACTTAAGGTCAAAGATTACAAC--A--------AA--T----TTCTTCTAATCTCG
*
9227785 ACATTCCCCCACAAGTTAACTGGATTTTAATATCAATTACTT
115 ACACTCCCCCACAAGTTAACTGGATTTTAATATCAATTACTT
* * *
9227827 AAGGTCAAAGATTACAACATATTTCTTCTAATATCGACACTTCCCCACAAGTTAACTAGATCCTA
1 AAGGTCAAAGATTACAACATATTTCTTCTAATCTCGACACTCCCCCACAAGTTAACTGGATCCTA
* * * *
9227892 ATATCAATTAGTTAAGGTCAAATG-TTACAACATATTTCTTTTAATCTCGACACTCCTCCACAAG
66 ATATCAATTACTTAAGGTCAAA-GATTACAACAAATTTCTTCTAATCTCGACACTCCCCCACAAG
9227956 TT
130 TT
9227958 GGTGCGTAGA
Statistics
Matches: 394, Mismatches: 47, Indels: 35
0.83 0.10 0.07
Matches are distributed among these distances:
155 18 0.05
156 233 0.59
158 1 0.00
160 1 0.00
162 1 0.00
166 2 0.01
168 1 0.00
170 1 0.00
172 135 0.34
173 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (156 bp):
AAGGTCAAAGATTACAACATATTTCTTCTAATCTCGACACTCCCCCACAAGTTAACTGGATCCTA
ATATCAATTACTTAAGGTCAAAGATTACAACAAATTTCTTCTAATCTCGACACTCCCCCACAAGT
TAACTGGATTTTAATATCAATTACTT
Found at i:9227780 original size:16 final size:16
Alignment explanation
Indices: 9227755--9227786 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9227745 TACAACATAT
*
9227755 TTCTTTTAATCTCGAC
1 TTCTTCTAATCTCGAC
9227771 TTCTTCTAATCTCGAC
1 TTCTTCTAATCTCGAC
9227787 ATTCCCCCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.28, G:0.06, T:0.47
Consensus pattern (16 bp):
TTCTTCTAATCTCGAC
Found at i:9227838 original size:94 final size:94
Alignment explanation
Indices: 9227677--9227864 Score: 304
Period size: 94 Copynumber: 2.0 Consensus size: 94
9227667 TTCAACATAT
* * *
9227677 TTCTTTTAATCTCTACACTCCCCCATAAGCTAACTGGATCTTAATATCAATTACTTAAGGTCAAA
1 TTCTTCTAATCTCGACACTCCCCCACAAGCTAACTGGATCTTAATATCAATTACTTAAGGTCAAA
* *
9227742 GATTACAACATATTTCTTTTAATCTCGAC
66 GATTACAACATATTTCTTCTAATATCGAC
* * *
9227771 TTCTTCTAATCTCGACATTCCCCCACAAGTTAACTGGATTTTAATATCAATTACTTAAGGTCAAA
1 TTCTTCTAATCTCGACACTCCCCCACAAGCTAACTGGATCTTAATATCAATTACTTAAGGTCAAA
9227836 GATTACAACATATTTCTTCTAATATCGAC
66 GATTACAACATATTTCTTCTAATATCGAC
9227865 ACTTCCCCAC
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (94 bp):
TTCTTCTAATCTCGACACTCCCCCACAAGCTAACTGGATCTTAATATCAATTACTTAAGGTCAAA
GATTACAACATATTTCTTCTAATATCGAC
Found at i:9227896 original size:172 final size:172
Alignment explanation
Indices: 9227599--9227942 Score: 537
Period size: 172 Copynumber: 2.0 Consensus size: 172
9227589 TACAACAAAT
*
9227599 TTCTTCTAATCTTGACACTCCCCCACAAGTTAACTAGATCCTAATATCAATTACTTAAGGTCAAA
1 TTCTTCTAATCTCGACACTCCCCCACAAGTTAACTAGATCCTAATATCAATTACTTAAGGTCAAA
* * * * * * *
9227664 GATTTCAACATATTTCTTTTAATCTCTACACTCCCCCATAAGCTAACTGGATCTTAATATCAATT
66 GATTACAACATATTTCTTCTAATATCGACACTCCCCCACAAGCTAACTAGATCCTAATATCAATT
9227729 ACTTAAGGTCAAA-GATTACAACATATTTCTTTTAATCTCGAC
131 ACTTAAGGTCAAATG-TTACAACATATTTCTTTTAATCTCGAC
* * **
9227771 TTCTTCTAATCTCGACATTCCCCCACAAGTTAACTGGATTTTAATATCAATTACTTAAGGTCAAA
1 TTCTTCTAATCTCGACACTCCCCCACAAGTTAACTAGATCCTAATATCAATTACTTAAGGTCAAA
* *
9227836 GATTACAACATATTTCTTCTAATATCGACACTTCCCCACAAGTTAACTAGATCCTAATATCAATT
66 GATTACAACATATTTCTTCTAATATCGACACTCCCCCACAAGCTAACTAGATCCTAATATCAATT
*
9227901 AGTTAAGGTCAAATGTTACAACATATTTCTTTTAATCTCGAC
131 ACTTAAGGTCAAATGTTACAACATATTTCTTTTAATCTCGAC
9227943 ACTCCTCCAC
Statistics
Matches: 156, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
172 155 0.99
173 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.35
Consensus pattern (172 bp):
TTCTTCTAATCTCGACACTCCCCCACAAGTTAACTAGATCCTAATATCAATTACTTAAGGTCAAA
GATTACAACATATTTCTTCTAATATCGACACTCCCCCACAAGCTAACTAGATCCTAATATCAATT
ACTTAAGGTCAAATGTTACAACATATTTCTTTTAATCTCGAC
Found at i:9227900 original size:78 final size:78
Alignment explanation
Indices: 9227771--9227957 Score: 272
Period size: 78 Copynumber: 2.4 Consensus size: 78
9227761 TAATCTCGAC
* **
9227771 TTCTTCTAATCTCGACA-TTCCCCCACAAGTTAACTGGATTTTAATATCAATTACTTAAGGTCAA
1 TTCTTCTAATCTCGACACTT-CCCCACAAGTTAACTAGATCCTAATATCAATTACTTAAGGTCAA
9227835 A-GATTACAACATAT
65 ATG-TTACAACATAT
* *
9227849 TTCTTCTAATATCGACACTTCCCCACAAGTTAACTAGATCCTAATATCAATTAGTTAAGGTCAAA
1 TTCTTCTAATCTCGACACTTCCCCACAAGTTAACTAGATCCTAATATCAATTACTTAAGGTCAAA
9227914 TGTTACAACATAT
66 TGTTACAACATAT
*
9227927 TTCTTTTAATCTCGACAC-TCCTCCACAAGTT
1 TTCTTCTAATCTCGACACTTCC-CCACAAGTT
9227958 GGTGCGTAGA
Statistics
Matches: 99, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
77 3 0.03
78 93 0.94
79 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.35
Consensus pattern (78 bp):
TTCTTCTAATCTCGACACTTCCCCACAAGTTAACTAGATCCTAATATCAATTACTTAAGGTCAAA
TGTTACAACATAT
Found at i:9230989 original size:6 final size:6
Alignment explanation
Indices: 9230978--9231004 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9230968 CTATTAACAT
9230978 GACTCG GACTCG GACTCG GACTCG GAC
1 GACTCG GACTCG GACTCG GACTCG GAC
9231005 GGATACATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.15
Consensus pattern (6 bp):
GACTCG
Found at i:9232639 original size:105 final size:104
Alignment explanation
Indices: 9232428--9232664 Score: 291
Period size: 105 Copynumber: 2.3 Consensus size: 104
9232418 GTGAGCAACA
* * *
9232428 GACATGGGCATGTGTCTAGG-CTGTGTAACTCACTATTTATGATTTAGGACCACACAGCTAGGGA
1 GACATGGGCGTGTGTCTAGGTC-GTGTAACTCACTATTTACGATTTAAGACCACACAGCTAGGGA
* * *
9232492 CATGGGCATGTGCCCAGGCCATATGAGTCATACGGGCAAG
65 CATGGGCATGCGCCCAGGCCATATGACTCACACGGGCAAG
* * *
9232532 GACATGGGCGTGTGTTTAGGTCGTGTAACTCACTGTTTACGA-TTAAGATCCACATGAGC-AGAG
1 GACATGGGCGTGTGTCTAGGTCGTGTAACTCACTATTTACGATTTAAGA-CCACA-CAGCTAG-G
* * *
9232595 GACATGGGCGTGCGTCCAGGCCATGTGACTCACACGGGCAAG
63 GACATGGGCATGCGCCCAGGCCATATGACTCACACGGGCAAG
* *
9232637 GACATGGGCGTGTATCCAGGTCGTGTAA
1 GACATGGGCGTGTGTCTAGGTCGTGTAA
9232665 GCCATATGGG
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
103 5 0.04
104 43 0.38
105 66 0.58
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (104 bp):
GACATGGGCGTGTGTCTAGGTCGTGTAACTCACTATTTACGATTTAAGACCACACAGCTAGGGAC
ATGGGCATGCGCCCAGGCCATATGACTCACACGGGCAAG
Found at i:9232655 original size:42 final size:42
Alignment explanation
Indices: 9232593--9232699 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 42
9232583 ACATGAGCAG
* *
9232593 AGGACATGGGCGTGCGTCCAGGCCATGTGA-CTCACACGGGCA
1 AGGACATGGGCGTGTGTCCAGGCCATGTAAGC-CACACGGGCA
* * * * *
9232635 AGGACATGGGCGTGTATCCAGGTCGTGTAAGCCATATGGGCA
1 AGGACATGGGCGTGTGTCCAGGCCATGTAAGCCACACGGGCA
*
9232677 AGTACATGGGCGTGTGTCCAGGC
1 AGGACATGGGCGTGTGTCCAGGC
9232700 TTTGTGGCAT
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 53 0.98
43 1 0.02
ACGTcount: A:0.21, C:0.23, G:0.36, T:0.19
Consensus pattern (42 bp):
AGGACATGGGCGTGTGTCCAGGCCATGTAAGCCACACGGGCA
Found at i:9233263 original size:22 final size:22
Alignment explanation
Indices: 9233204--9233264 Score: 68
Period size: 24 Copynumber: 2.7 Consensus size: 22
9233194 CATATGGATA
* *
9233204 TGATATGTTCTGTATATGAAAT
1 TGATTTGTTCTGTATATGAAAC
* *
9233226 TGAAATTGCTTCTGTATATGTAAC
1 TG-ATTTG-TTCTGTATATGAAAC
9233250 TGATTTGTTCTGTAT
1 TGATTTGTTCTGTAT
9233265 CTGAGCTGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 10 0.31
23 7 0.22
24 15 0.47
ACGTcount: A:0.26, C:0.08, G:0.18, T:0.48
Consensus pattern (22 bp):
TGATTTGTTCTGTATATGAAAC
Found at i:9236491 original size:18 final size:17
Alignment explanation
Indices: 9236468--9236501 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9236458 ATAGCTGTGT
9236468 ACTGAAACCATGCTAAAG
1 ACTGAAACCATG-TAAAG
*
9236486 ACTGAAGCCATGTAAA
1 ACTGAAACCATGTAAA
9236502 TCTAAGTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.18
Consensus pattern (17 bp):
ACTGAAACCATGTAAAG
Found at i:9248032 original size:8 final size:8
Alignment explanation
Indices: 9248021--9248050 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
9248011 TGCTCTTCTT
9248021 TGCTTTAC
1 TGCTTTAC
9248029 TGCTTTAC
1 TGCTTTAC
9248037 TGCTTTAC
1 TGCTTTAC
9248045 TGCTTT
1 TGCTTT
9248051 GCTTTACTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.10, C:0.23, G:0.13, T:0.53
Consensus pattern (8 bp):
TGCTTTAC
Found at i:9248053 original size:13 final size:13
Alignment explanation
Indices: 9248018--9248065 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
9248008 CTTTGCTCTT
9248018 CTTTGCTTTACTG
1 CTTTGCTTTACTG
9248031 CTTTACTGCTTTACTG
1 C-TT--TGCTTTACTG
9248047 CTTTGCTTTACTG
1 CTTTGCTTTACTG
*
9248060 TTTTGC
1 CTTTGC
9248066 CAAGGAAGCC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
13 16 0.52
14 2 0.06
15 2 0.06
16 11 0.35
ACGTcount: A:0.08, C:0.23, G:0.15, T:0.54
Consensus pattern (13 bp):
CTTTGCTTTACTG
Found at i:9252930 original size:4 final size:4
Alignment explanation
Indices: 9252921--9252946 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
9252911 TTTATCATAT
9252921 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
9252947 ATTAGTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:9252968 original size:20 final size:21
Alignment explanation
Indices: 9252900--9252968 Score: 72
Period size: 20 Copynumber: 3.3 Consensus size: 21
9252890 GATAACTTTA
9252900 TTTTATTATGTTTTATCATA-
1 TTTTATTATGTTTTATCATAT
* *
9252920 TTTTATTTATTTATTTAT-TTAT
1 TTTTA-TTATGT-TTTATCATAT
9252942 TTATTATTA-GTTTTATCATAT
1 TT-TTATTATGTTTTATCATAT
9252963 TTTTAT
1 TTTTAT
9252969 CTTAAATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
20 14 0.35
21 13 0.32
22 10 0.25
23 3 0.08
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (21 bp):
TTTTATTATGTTTTATCATAT
Found at i:9255196 original size:23 final size:25
Alignment explanation
Indices: 9255168--9255215 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
9255158 GTCTTGATTC
9255168 TTAAAAA-TTTAAAA-TTAATTTTT
1 TTAAAAATTTTAAAAGTTAATTTTT
*
9255191 TTAAAAATTTTAAAAGTTTATTTTT
1 TTAAAAATTTTAAAAGTTAATTTTT
9255216 CAATTAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.32
24 7 0.32
25 8 0.36
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
TTAAAAATTTTAAAAGTTAATTTTT
Found at i:9255344 original size:20 final size:20
Alignment explanation
Indices: 9255321--9255369 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
9255311 ATTTATTTAT
*
9255321 TAAAATAATAATTTTATAAA
1 TAAAATAATAATCTTATAAA
9255341 TAAAATAATAATCTTATAAA
1 TAAAATAATAATCTTATAAA
*
9255361 CAAAATAAT
1 TAAAATAAT
9255370 TCAAGGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (20 bp):
TAAAATAATAATCTTATAAA
Found at i:9261533 original size:10 final size:10
Alignment explanation
Indices: 9261498--9261540 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
9261488 AATAAGGCGC
*
9261498 ATACATATAT
1 ATACACATAT
*
9261508 ATACACACAT
1 ATACACATAT
*
9261518 ACACACATAT
1 ATACACATAT
*
9261528 ATACACGTAT
1 ATACACATAT
9261538 ATA
1 ATA
9261541 TTACATTATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.49, C:0.21, G:0.02, T:0.28
Consensus pattern (10 bp):
ATACACATAT
Found at i:9264911 original size:20 final size:20
Alignment explanation
Indices: 9264886--9264926 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
9264876 TGGTTGTTTA
9264886 TAGTCATCATAAGTAGCAAG
1 TAGTCATCATAAGTAGCAAG
9264906 TAGTCATCATAAGTAGCAAG
1 TAGTCATCATAAGTAGCAAG
9264926 T
1 T
9264927 TGTACTGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (20 bp):
TAGTCATCATAAGTAGCAAG
Found at i:9276608 original size:23 final size:22
Alignment explanation
Indices: 9276582--9276626 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
9276572 GAATTAAATC
9276582 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
9276605 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
9276627 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:9276649 original size:17 final size:17
Alignment explanation
Indices: 9276598--9276641 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 17
9276588 ATTACAAAAT
9276598 CATATCTTCTAAGATTG
1 CATATCTTCTAAGATTG
9276615 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTG
9276634 CATATCTT
1 CATATCTT
9276642 TGAAGATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.28
18 2 0.08
19 16 0.64
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (17 bp):
CATATCTTCTAAGATTG
Found at i:9277476 original size:132 final size:132
Alignment explanation
Indices: 9277064--9277476 Score: 560
Period size: 131 Copynumber: 3.1 Consensus size: 132
9277054 AATTGGTAAT
* ** ** * *
9277064 TTCAACCTGCTCCACTGCAACTTCAGGGAGATA-AGGTTGGTGGCTTAAATCTACTTCTCTACTT
1 TTCAACCTACTCCACTGCTGC-TCAGGGAGATAGA-ACTGGTGGCTTAAATCTACTTCCCTACTA
* * *
9277128 CCTCGGGAAGATAAGACTCGCTGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATATAC
64 CCTCGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAC
*
9277193 AATC
129 AATA
* * * * *
9277197 TTCAACCTACTCCACTACTGCTCAGGGAGATAGAACTGGTGGCATAAATTTTCTTCCC-ACTATC
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGAACTGGTGGCTTAAATCTACTTCCCTACTACC
* * *
9277261 TCGAGAAGATAAGATTCGCCGTCTTCGATCTGATCCACTACTGCTTAGGGAGACAGGATCTACAA
66 TCGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
*
9277326 TT
131 TA
* *
9277328 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCCTGCTACC
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGAACTGGTGGCTTAAATCTACTTCCCTACTACC
* * * *
9277393 TTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTGCTGCTTAGGGAGACAGGATCTACAA
66 TCGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
9277458 TA
131 TA
9277460 TTCAACCTACTCCACTG
1 TTCAACCTACTCCACTG
9277477 TAAACTTAGA
Statistics
Matches: 245, Mismatches: 33, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
131 118 0.48
132 109 0.44
133 18 0.07
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (132 bp):
TTCAACCTACTCCACTGCTGCTCAGGGAGATAGAACTGGTGGCTTAAATCTACTTCCCTACTACC
TCGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
TA
Found at i:9277580 original size:89 final size:89
Alignment explanation
Indices: 9277467--9277673 Score: 252
Period size: 89 Copynumber: 2.3 Consensus size: 89
9277457 ATATTCAACC
* * * * * * *
9277467 TACTCCACTGTAAACTTAGAGAGGCAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTACAAGA
1 TACTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCACTGCCAATACAAGA
* * *
9277532 AGACAAGATCTGCTATTTTCAGTC
66 AGACAAGATCTGCTATCTTCAATA
* * * * *
9277556 TACTCCGCTGCAAATTCAGGGAGGCAAGGTTGGTGTCTTCGATCTACTTCGCTGTCAATACAGGA
1 TACTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCACTGCCAATACAAGA
*
9277621 AGACAAGATCTGTTATCTTCAATA
66 AGACAAGATCTGCTATCTTCAATA
* *
9277645 TGCTCCGCTGCAAACTCAGGGAGGTAAGG
1 TACTCCGCTGCAAACTCAGGGAGGCAAGG
9277674 ATTTGTAGCT
Statistics
Matches: 99, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
89 99 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (89 bp):
TACTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCACTGCCAATACAAGA
AGACAAGATCTGCTATCTTCAATA
Found at i:9277701 original size:45 final size:46
Alignment explanation
Indices: 9277637--9278438 Score: 264
Period size: 45 Copynumber: 17.9 Consensus size: 46
9277627 GATCTGTTAT
* ** * *
9277637 CTTCAATATGCTCCGCTGCAAAC-TCAGGGAGGTAAGGATTTG-TAG
1 CTTCAATCTGCTCTACTGC-AACTTCAGGGAGATAAGGATTCGCTAG
* * *
9277682 CTTCAATCTGTTCTACTGCAACTTTAGGGAGATAA-GATTCGCTAT
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGATTCGCTAG
* ** *
9277727 CTTCAGTCTGCTCTACTGCAACTTCAGGGAGATAA-GATT-ATTGG
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGATTCGCTAG
* * * * *
9277771 CTTTAATCTGCTCCACTGCAACTTTAGAGAGATAA-GATTTGC---
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGATTCGCTAG
* * * * * **
9277813 CAT-GATCTGCTCTATTACAACTTCAGAGAGATAAGATCTGTGATT-TATAG
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGAT-A-A---G-GATTCGCTAG
* * * * * *
9277863 CTTTAATCT-ATTTCACTGCAACTTTAGGGAAATAA-GATTCGCTAT
1 CTTCAATCTGCTCT-ACTGCAACTTCAGGGAGATAAGGATTCGCTAG
* * * * *
9277908 CTTCAGTCTGCTCCACTACAACTTCAGAGAGATAA-GACTT-G-TAA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGA-TTCGCTAG
* * *** ** *
9277952 CTTTAATCTGCTCTACTGCAACCTCAAAAAGAT-AGGATT-ATTGG
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGATTCGCTAG
* * * * *
9277996 CTTTAATCTGCTCCACTACAACTTCAGGGAGATAA-GATTTGCTAT
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGATTCGCTAG
* * * * * **
9278041 CTTCAGTCTGCCCTACTGCAACTTCAGGGGGATAA-TACTT-GTTTT
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGA-TTCGCTAG
* * * * * *
9278086 CTTTAGTCTACTCCACTACAACTTCAGGGAGATAA-GACTT-G-TAA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGA-TTCGCTAG
* * * ** *
9278130 CTTTAAT-TCGCTCCACTGCAACTTCAGAGAGAT-AGGATT-ATTGG
1 CTTCAATCT-GCTCTACTGCAACTTCAGGGAGATAAGGATTCGCTAG
* * * * *
9278174 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA-GATTTGCCAT
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGATTCGCTAG
* * * * **
9278219 CTTTAATTTG-TCCCACTGCAACTTCAGGGGGATAA-GACTT-GCTTT
1 CTTCAATCTGCT-CTACTGCAACTTCAGGGAGATAAGGA-TTCGCTAG
* * * * **
9278264 CTTCAGTATGCT-TCACTACAACTTCAGGGGGATAA-GACTT-GCTTT
1 CTTCAATCTGCTCT-ACTGCAACTTCAGGGAGATAAGGA-TTCGCTAG
* * * *
9278309 CTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAA-GACTT-G-TAA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGA-TTCGCTAG
* * * * * * *
9278353 CTTTAATCCGCTCCACTGTAACTTCAGGAAGAT-AGGATT--ATTG
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGATTCGCTAG
* * * *
9278396 CCTTTAATCTGCTCCACTACAACTTCAAGGAGATAA-GATTCGC
1 -CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGATTCGC
9278439 CATCTTCTTC
Statistics
Matches: 585, Mismatches: 132, Indels: 79
0.73 0.17 0.10
Matches are distributed among these distances:
41 24 0.04
42 3 0.01
43 12 0.02
44 237 0.41
45 273 0.47
46 8 0.01
48 4 0.01
49 1 0.00
50 5 0.01
51 18 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (46 bp):
CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGGATTCGCTAG
Found at i:9277889 original size:92 final size:94
Alignment explanation
Indices: 9277673--9277944 Score: 247
Period size: 89 Copynumber: 2.9 Consensus size: 94
9277663 GGGAGGTAAG
* * ** * * * *
9277673 GATTTGTAGCTTCAATCTGTTCTACTGCAACTTTAGGGAGATAAGATTCGCTATCTTCAGTCTGC
1 GATTTATAGCTTTAATCTACTCCACTGCAACTTTAGAGAAATAAGATTCGC--TCATCAGTCTGC
* * *
9277738 TCTACTGCAACTTCAGGGAGATAAGA--T-T
64 TCCACTACAACTTCAGAGAGATAAGATCTGT
* * * * *
9277766 -A--T-TGGCTTTAATCTGCTCCACTGCAACTTTAGAGAGATAAGATTTGC-CATGA-TCTGCTC
1 GATTTATAGCTTTAATCTACTCCACTGCAACTTTAGAGAAATAAGATTCGCTCATCAGTCTGCTC
* *
9277825 TATTACAACTTCAGAGAGATAAGATCTGT
66 CACTACAACTTCAGAGAGATAAGATCTGT
* * * *
9277854 GATTTATAGCTTTAATCTATTTCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGC
1 GATTTATAGCTTTAATCTACTCCACTGCAACTTTAGAGAAATAAGATTCGC--TCATCAGTCTGC
9277919 TCCACTACAACTTCAGAGAGATAAGA
64 TCCACTACAACTTCAGAGAGATAAGA
9277945 CTTGTAACTT
Statistics
Matches: 146, Mismatches: 22, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
85 28 0.19
86 3 0.02
87 1 0.01
88 1 0.01
89 40 0.27
90 1 0.01
91 1 0.01
92 39 0.27
95 3 0.02
96 29 0.20
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (94 bp):
GATTTATAGCTTTAATCTACTCCACTGCAACTTTAGAGAAATAAGATTCGCTCATCAGTCTGCTC
CACTACAACTTCAGAGAGATAAGATCTGT
Found at i:9278018 original size:88 final size:88
Alignment explanation
Indices: 9277914--9278435 Score: 390
Period size: 89 Copynumber: 5.9 Consensus size: 88
9277904 CTATCTTCAG
* * *
9277914 TCTGCTCCACTACAACTTCAGAGAGATAAGACTTGTAACTTTAATCTGCTCTACTGCAACCTCAA
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCTACTGCAACTTCAG
*
9277979 AAAGATAGGATTATTGGCTTTAA
66 AGAGATAGGATTATTGGCTTTAA
* * * * *
9278002 TCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCCCTACTGCAACTTCA
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTTG-TAACTTTAATCTGCTCTACTGCAACTTCA
* * ** * ** *
9278067 GGGGGATAATACTTGTTTTCTTTAG
65 GAGAGATAGGA-TTATTGGCTTTAA
* *
9278092 TCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAAT-TCGCTCCACTGCAACTTCA
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAATCT-GCTCTACTGCAACTTCA
9278156 GAGAGATAGGATTATTGGCTTTAA
65 GAGAGATAGGATTATTGGCTTTAA
* * * * * *
9278180 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTTAATTTG-TCCCACTGCAACTTC
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTTG-TAACTTTAATCTGCT-CTACTGCAACTTC
* * * * * * *
9278244 AGGGGGATAAGACTTGCTT-TCTTCAG
64 AGAGAGATAGGA-TT-ATTGGCTTTAA
* * * ** * * * *
9278270 TATGCTTCACTACAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTTTGCTCCACTGCAACTTCA
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTTG-TAACTTTAATCTGCTCTACTGCAACTTCA
* * * **
9278335 GGGAGATAAGACTT-GTAACTTTAA
65 GAGAGATAGGA-TTATTGGCTTTAA
* ** * * * ** * *
9278359 TCCGCTCCACTGTAACTTCAGGAAGATAGGA-TTATTGCCTTTAATCTGCTCCACTACAACTTCA
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTT-GTAACTTTAATCTGCTCTACTGCAACTTCA
*
9278423 -AGGAGATAAGATT
65 GA-GAGATAGGATT
9278436 CGCCATCTTC
Statistics
Matches: 348, Mismatches: 74, Indels: 25
0.78 0.17 0.06
Matches are distributed among these distances:
87 2 0.01
88 111 0.32
89 116 0.33
90 116 0.33
91 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (88 bp):
TCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCTACTGCAACTTCAG
AGAGATAGGATTATTGGCTTTAA
Found at i:9278120 original size:178 final size:178
Alignment explanation
Indices: 9277660--9278304 Score: 644
Period size: 178 Copynumber: 3.6 Consensus size: 178
9277650 CGCTGCAAAC
* * * * * * *
9277660 TCAGGGAGGTAAGGATTTG-TAGCTTCAATCTGTTCTACTGCAACTTTAGGGAGATAAGA-TTCG
1 TCAGGGAGATAA-GATTTGCCATCTTCAATCTGTCCCACTGCAACTTCAGGGGGATAAGACTT-G
* * * * **
9277723 CTATCTTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAGA-TTATTGGCTTTAA-TCTGCTCCA
64 CTTTCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTT-GTAACTTTAATTC-GCTCCA
* * * * * ** * * *
9277786 CTGCAACTTTAGAGAGATAAGA-T-TT-GCCATGATCTGCTCTATTACAACT
127 CTGCAACCTCAAAAAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACT
* ** * * ** * **
9277835 TCAGAGAGATAAGATCTGTGATTTATAGCTTTAATCTATTTCACTGCAACTTTAGGGAAATAAGA
1 TCAGGGAGATAAGAT-T-TG--CCAT--CTTCAATCTGTCCCACTGCAACTTCAGGGGGATAAGA
* *
9277900 -TTCGCTATCTTCAGTCTGCTCCACTACAACTTCAGAGAGATAAGACTTGTAACTTTAA-TCTGC
60 CTT-GCTTTCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAATTC-GC
*
9277963 TCTACTGCAACCTCAAAAAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACT
123 TCCACTGCAACCTCAAAAAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACT
* * * *
9278019 TCAGGGAGATAAGATTTGCTATCTTCAGTCTG-CCCTACTGCAACTTCAGGGGGATAATACTTGT
1 TCAGGGAGATAAGATTTGCCATCTTCAATCTGTCCC-ACTGCAACTTCAGGGGGATAAGACTTGC
* *
9278083 TTTCTTTAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAATTCGCTCCACTG
65 TTTCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAATTCGCTCCACTG
* * * *
9278148 CAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACT
130 CAACCTCAAAAAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACT
* *
9278197 TCAGGGAGATAAGATTTGCCATCTTTAATTTGTCCCACTGCAACTTCAGGGGGATAAGACTTGCT
1 TCAGGGAGATAAGATTTGCCATCTTCAATCTGTCCCACTGCAACTTCAGGGGGATAAGACTTGCT
* * *
9278262 TTCTTCAGTATGCTTCACTACAACTTCAGGGGGATAAGACTTG
66 TTCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTG
9278305 CTTTCTTCAG
Statistics
Matches: 398, Mismatches: 57, Indels: 27
0.83 0.12 0.06
Matches are distributed among these distances:
174 3 0.01
175 11 0.03
176 2 0.01
177 1 0.00
178 222 0.56
179 9 0.02
180 3 0.01
181 106 0.27
182 5 0.01
183 3 0.01
184 33 0.08
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (178 bp):
TCAGGGAGATAAGATTTGCCATCTTCAATCTGTCCCACTGCAACTTCAGGGGGATAAGACTTGCT
TTCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAATTCGCTCCACTGC
AACCTCAAAAAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACT
Found at i:9278325 original size:223 final size:223
Alignment explanation
Indices: 9278008--9278444 Score: 671
Period size: 223 Copynumber: 2.0 Consensus size: 223
9277998 TTAATCTGCT
* * *
9278008 CCACTACAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCCCTACTGCAACTTCAGGGGGA
1 CCACTACAACTTCAGGGAGATAAGACTTGCTATCTTCAGTATGCCCTACTACAACTTCAGGGGGA
* * * *
9278073 TAATACTTGTTTTCTTTAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAATT
66 TAAGACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAATC
* * *
9278138 CGCTCCACTGCAACTTCA-GAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGG
131 CGCTCCACTGCAACTTCAGGA-AGATAGGATTATTGCCTTTAATCTGCTCCACTACAACTTCAAG
*
9278202 GAGATAAGATTTGCCATCTTTAATTTGTC
195 GAGATAAGATTCGCCATCTTTAATTTGTC
* * * *
9278231 CCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTATG-CTTCACTACAACTTCAGGGGG
1 CCACTACAACTTCAGGGAGATAAGACTTGCTATCTTCAGTATGCCCT-ACTACAACTTCAGGGGG
* * *
9278295 ATAAGACTTGCTTTCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAAT
65 ATAAGACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAAT
*
9278360 CCGCTCCACTGTAACTTCAGGAAGATAGGATTATTGCCTTTAATCTGCTCCACTACAACTTCAAG
130 CCGCTCCACTGCAACTTCAGGAAGATAGGATTATTGCCTTTAATCTGCTCCACTACAACTTCAAG
9278425 GAGATAAGATTCGCCATCTT
195 GAGATAAGATTCGCCATCTT
9278445 CTTCAATCCA
Statistics
Matches: 193, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
222 2 0.01
223 189 0.98
224 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (223 bp):
CCACTACAACTTCAGGGAGATAAGACTTGCTATCTTCAGTATGCCCTACTACAACTTCAGGGGGA
TAAGACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAATC
CGCTCCACTGCAACTTCAGGAAGATAGGATTATTGCCTTTAATCTGCTCCACTACAACTTCAAGG
AGATAAGATTCGCCATCTTTAATTTGTC
Found at i:9278794 original size:24 final size:24
Alignment explanation
Indices: 9278767--9278842 Score: 107
Period size: 24 Copynumber: 3.2 Consensus size: 24
9278757 TTTCCCACAT
* *
9278767 TGTAATTTTTAAGGTTCAATCCAC
1 TGTAATCTTCAAGGTTCAATCCAC
* *
9278791 TGTAATCTTCAAGGATCAATCTAC
1 TGTAATCTTCAAGGTTCAATCCAC
*
9278815 TATAATCTTCAAGGTTCAATCCAC
1 TGTAATCTTCAAGGTTCAATCCAC
9278839 TGTA
1 TGTA
9278843 CTTTTGGGAC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (24 bp):
TGTAATCTTCAAGGTTCAATCCAC
Found at i:9285819 original size:23 final size:22
Alignment explanation
Indices: 9285791--9285835 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
9285781 AAATTAAATA
9285791 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
9285814 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
9285836 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:9287611 original size:25 final size:26
Alignment explanation
Indices: 9287567--9287618 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
9287557 TAATTTTACC
* *
9287567 TATGACGATTTTACCTCTGGTAAAAT
1 TATGACGAATTTACCCCTGGTAAAAT
9287593 TATGAC-AATTTACCCCTGGTAAAAT
1 TATGACGAATTTACCCCTGGTAAAAT
9287618 T
1 T
9287619 TCAAGAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (26 bp):
TATGACGAATTTACCCCTGGTAAAAT
Found at i:9288727 original size:17 final size:17
Alignment explanation
Indices: 9288705--9288745 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
9288695 ACTTCAGGGG
9288705 TCACACGACCGTGTGCT
1 TCACACGACCGTGTGCT
9288722 TCACACGACCGTGTGCT
1 TCACACGACCGTGTGCT
9288739 TCACACG
1 TCACACG
9288746 GCTGAGACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.20, C:0.37, G:0.22, T:0.22
Consensus pattern (17 bp):
TCACACGACCGTGTGCT
Found at i:9290124 original size:74 final size:74
Alignment explanation
Indices: 9290046--9290280 Score: 255
Period size: 74 Copynumber: 3.2 Consensus size: 74
9290036 ACGGAGGTTA
* ** *
9290046 CGCCCAGCGCTAGCCGGATAAATTGACGAATAATTAGTGAGCCCAGCGCTAGTTGGATAAACCAA
1 CGCCCAGCGCTAGTCGGATAAACCGACGAATAATTAGTGAGCCCAGCACTAGTTGGATAAACCAA
9290111 CGATATTTG
66 CGATATTTG
* * * * * ** **
9290120 CGCCCAGTGCTAGTTGGATAGACCGACG---AA-T-GTGTGCCCAACACTAGTCAGATAAACTGA
1 CGCCCAGCGCTAGTCGGATAAACCGACGAATAATTAGTGAGCCCAGCACTAGTTGGATAAACCAA
* *
9290180 CGAAAGTTG
66 CGATATTTG
* * * *
9290189 CGCCCAGCGCTAATCGAATAAACCGACGAATAATTAGTGAGCCCAGCTCTAATTGGATAAACCAA
1 CGCCCAGCGCTAGTCGGATAAACCGACGAATAATTAGTGAGCCCAGCACTAGTTGGATAAACCAA
9290254 CGATATTTG
66 CGATATTTG
*
9290263 CGCCCAGCACTAGTCGGA
1 CGCCCAGCGCTAGTCGGA
9290281 CGAATCAACG
Statistics
Matches: 123, Mismatches: 33, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
69 52 0.42
70 1 0.01
71 2 0.02
72 2 0.02
73 1 0.01
74 65 0.53
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.20
Consensus pattern (74 bp):
CGCCCAGCGCTAGTCGGATAAACCGACGAATAATTAGTGAGCCCAGCACTAGTTGGATAAACCAA
CGATATTTG
Found at i:9290132 original size:35 final size:35
Alignment explanation
Indices: 9290086--9290276 Score: 159
Period size: 35 Copynumber: 5.4 Consensus size: 35
9290076 TAATTAGTGA
*
9290086 GCCCAGCGCTAGTTGGATAAACCAACGATATTTGC
1 GCCCAGCGCTAGTTGGATAAACCGACGATATTTGC
* * * *
9290121 GCCCAGTGCTAGTTGGATAGACCGACGA-ATGTGT
1 GCCCAGCGCTAGTTGGATAAACCGACGATATTTGC
* * ** * * *
9290155 GCCCAACACTAGTCAGATAAACTGACGAAAGTTGC
1 GCCCAGCGCTAGTTGGATAAACCGACGATATTTGC
* * * *
9290190 GCCCAGCGCTAATCGAATAAACCGACGAATAATTAGTGA
1 GCCCAGCGCTAGTTGGATAAACCGACG-AT-ATT--TGC
* * *
9290229 GCCCAGCTCTAATTGGATAAACCAACGATATTTGC
1 GCCCAGCGCTAGTTGGATAAACCGACGATATTTGC
*
9290264 GCCCAGCACTAGT
1 GCCCAGCGCTAGT
9290277 CGGACGAATC
Statistics
Matches: 120, Mismatches: 31, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
34 25 0.21
35 62 0.52
36 1 0.01
37 5 0.04
38 2 0.02
39 25 0.21
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (35 bp):
GCCCAGCGCTAGTTGGATAAACCGACGATATTTGC
Found at i:9290231 original size:143 final size:143
Alignment explanation
Indices: 9289973--9290280 Score: 436
Period size: 143 Copynumber: 2.2 Consensus size: 143
9289963 CGCCATAGGG
* * * *
9289973 TTTGCGCCTAGCGCTAGTCGGATAAATCGACAAATGTGTGCCCAGCACTAGCCAGATAAATTGAC
1 TTTGCGCCCAGCGCTAGTCGGATAAACCGACAAATGTGTGCCCAACACTAGCCAGATAAACTGAC
* * * * ** *
9290038 GGAGGTTACGCCCAGCGCTAGCCGGATAAATTGACGAATAATTAGTGAGCCCAGCGCTAGTTGGA
66 GAAAGTTACGCCCAGCGCTAACCGAATAAACCGACGAATAATTAGTGAGCCCAGCGCTAATTGGA
9290103 TAAACCAACGATA
131 TAAACCAACGATA
* * * * *
9290116 TTTGCGCCCAGTGCTAGTTGGATAGACCGACGAATGTGTGCCCAACACTAGTCAGATAAACTGAC
1 TTTGCGCCCAGCGCTAGTCGGATAAACCGACAAATGTGTGCCCAACACTAGCCAGATAAACTGAC
* * *
9290181 GAAAGTTGCGCCCAGCGCTAATCGAATAAACCGACGAATAATTAGTGAGCCCAGCTCTAATTGGA
66 GAAAGTTACGCCCAGCGCTAACCGAATAAACCGACGAATAATTAGTGAGCCCAGCGCTAATTGGA
9290246 TAAACCAACGATA
131 TAAACCAACGATA
*
9290259 TTTGCGCCCAGCACTAGTCGGA
1 TTTGCGCCCAGCGCTAGTCGGA
9290281 CGAATCAACG
Statistics
Matches: 143, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
143 143 1.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (143 bp):
TTTGCGCCCAGCGCTAGTCGGATAAACCGACAAATGTGTGCCCAACACTAGCCAGATAAACTGAC
GAAAGTTACGCCCAGCGCTAACCGAATAAACCGACGAATAATTAGTGAGCCCAGCGCTAATTGGA
TAAACCAACGATA
Found at i:9293154 original size:11 final size:11
Alignment explanation
Indices: 9293138--9293162 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9293128 AACATACTTA
9293138 ATTGGTACCAC
1 ATTGGTACCAC
9293149 ATTGGTACCAC
1 ATTGGTACCAC
9293160 ATT
1 ATT
9293163 TTGTAAGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (11 bp):
ATTGGTACCAC
Found at i:9295461 original size:372 final size:371
Alignment explanation
Indices: 9294776--9295520 Score: 916
Period size: 372 Copynumber: 2.0 Consensus size: 371
9294766 AGCATTCTCA
*
9294776 ATGTAACACCCCAAGTTTTGGGCCTAGAAGAAATAGGTTTTGAACAAGGGAGCAGTTAGGAGACT
1 ATGTAACACCCCAAGTTTTGGGCCTAGAAGAAATAGGTTTTGAACAAGGGAACAGTTAGGAGACT
* *
9294841 GCACATAAATATTTAGTTGTGCAAAGAAGTGACATAAATGAATGTCTGCTTCAATGGTTAAGTGA
66 ACACATAAATACTTAGTTGTGCAAAGAAGTGACATAAATGAATGTCTGCTTCAATGGTTAAGTGA
* * *
9294906 TTTAGGAGTGTTTGGAAGTGTCTGAGAAGCCTAAGTTCAAGTCTTAGCTTCTGCAGAATTTTTAC
131 TTTAGGAGTGTTTGGAAGTGTCTGAGAAGCCTAAGTTCAAGCCTTAGCTTATGCAAAATTTTTAC
** * * * ****
9294971 TTTTGCTCTTAAATGAATCTGGACACTGGCATATAGGCCTTATCAATAATAGTGGTTGTTTTATG
196 TTTTGAACTGAAATAAATCTGGACACTGACATATAGGCCTTA-CAATAATAGTGGTTAAAATATG
* * *
9295036 ACAAAAAGAGCTTGTGGCCTAGTGGTAAGGTGGCATGTTGTGTAACTGTGAGGTTTGAGGTTCAA
260 ACAAAAAGAACTTGTGGCCTAGTGGCAAGGTCGCATGTTGTGTAACTGTGAGGTTTGAGGTTCAA
* *
9295101 GTCCTGGGTTGAGCAAT-AGATTATTTATTTTGCTTCTTGAGCTGTGT
325 GTCCTGGGTTGAGCAATGA-AGTATTTATTTTGCTGCTTGAGCTGTGT
* *
9295148 ATGTAACACCCCGAA-TTTTGGGCCTAGAAGAAATATGTTTTGAGCAAGGGAACAGTTAGGA-AC
1 ATGTAACACCCC-AAGTTTTGGGCCTAGAAGAAATAGGTTTTGAACAAGGGAACAGTTAGGAGAC
* * * *
9295211 TATACATAAATACTTAGTTGTGCAAGGAAGTGACATAAATGAATGTTTGCTTCAGTGGTTAAGTG
65 TACACATAAATACTTAGTTGTGCAAAGAAGTGACATAAATGAATGTCTGCTTCAATGGTTAAGTG
* * * *
9295276 ATTTAGGAGTGTTTGGAAGTGTCTGAGAAGTC-AGGGGTTTAAGCCTTGGCTTATGCAAAATTTT
130 ATTTAGGAGTGTTTGGAAGTGTCTGAGAAGCCTA--AGTTCAAGCCTTAGCTTATGCAAAATTTT
* * * * * **
9295340 TA-TTTT-AAGTG-AATAAAATCCTTGGA-TCT-ATATAGTAGGTTCTTA-AATTATTTTGGTTA
193 TACTTTTGAACTGAAAT-AAAT-C-TGGACACTGACATA-TAGG-CCTTACAATAATAGTGGTTA
* * * *
9295399 AAATATGACACAAAAATAACTTGTGGTCTAGTGGCAAGGTCGCGTGTTGTGTAATTGTGAGGTTT
253 AAATATG--ACAAAAAGAACTTGTGGCCTAGTGGCAAGGTCGCATGTTGTGTAACTGTGAGGTTT
* * *
9295464 GGGGTTCAAGTCTTGGGTTGCGCAATGAAGTATTTATTTTGCTGCTTGAGCTGTGT
316 GAGGTTCAAGTCCTGGGTTGAGCAATGAAGTATTTATTTTGCTGCTTGAGCTGTGT
9295520 A
1 A
9295521 GGTAGTGGAG
Statistics
Matches: 318, Mismatches: 44, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
369 3 0.01
370 22 0.07
371 103 0.32
372 187 0.59
373 3 0.01
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (371 bp):
ATGTAACACCCCAAGTTTTGGGCCTAGAAGAAATAGGTTTTGAACAAGGGAACAGTTAGGAGACT
ACACATAAATACTTAGTTGTGCAAAGAAGTGACATAAATGAATGTCTGCTTCAATGGTTAAGTGA
TTTAGGAGTGTTTGGAAGTGTCTGAGAAGCCTAAGTTCAAGCCTTAGCTTATGCAAAATTTTTAC
TTTTGAACTGAAATAAATCTGGACACTGACATATAGGCCTTACAATAATAGTGGTTAAAATATGA
CAAAAAGAACTTGTGGCCTAGTGGCAAGGTCGCATGTTGTGTAACTGTGAGGTTTGAGGTTCAAG
TCCTGGGTTGAGCAATGAAGTATTTATTTTGCTGCTTGAGCTGTGT
Found at i:9296405 original size:19 final size:19
Alignment explanation
Indices: 9296363--9296422 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 19
9296353 CATGGGCTTA
9296363 GGCCGAAATGGGTCATGT-TG
1 GGCCGAAATGGG-C-TGTGTG
9296383 GGCCGAAATGGGCTGTGTG
1 GGCCGAAATGGGCTGTGTG
*
9296402 GGCC-CAATGGGCT-TGTG
1 GGCCGAAATGGGCTGTGTG
9296419 GGCC
1 GGCC
9296423 CCATACGGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
17 8 0.21
18 11 0.29
19 7 0.18
20 12 0.32
ACGTcount: A:0.15, C:0.20, G:0.43, T:0.22
Consensus pattern (19 bp):
GGCCGAAATGGGCTGTGTG
Found at i:9296425 original size:18 final size:18
Alignment explanation
Indices: 9296389--9296423 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
9296379 GTTGGGCCGA
9296389 AATGGGCTGTGTGGGCCC
1 AATGGGCTGTGTGGGCCC
9296407 AATGGGCT-TGTGGGCCC
1 AATGGGCTGTGTGGGCCC
9296424 CATACGGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.11, C:0.23, G:0.43, T:0.23
Consensus pattern (18 bp):
AATGGGCTGTGTGGGCCC
Found at i:9296712 original size:27 final size:27
Alignment explanation
Indices: 9296682--9296773 Score: 89
Period size: 27 Copynumber: 3.4 Consensus size: 27
9296672 ACTTGAAGGG
9296682 TAAAATGACTGAAATACCCCTATAGGA
1 TAAAATGACTGAAATACCCCTATAGGA
** *
9296709 TAAAATGACCAAAATATCCCC-ATAGGG
1 TAAAATGACTGAAATA-CCCCTATAGGA
* ** *
9296736 TAAAACGACTGTTATACCCCTA-GGAGA
1 TAAAATGACTGAAATACCCCTATAG-GA
9296763 TAAAATGACTG
1 TAAAATGACTG
9296774 TTATGGCCTT
Statistics
Matches: 51, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
26 5 0.10
27 42 0.82
28 4 0.08
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCCTATAGGA
Found at i:9297064 original size:109 final size:109
Alignment explanation
Indices: 9296873--9297094 Score: 381
Period size: 109 Copynumber: 2.0 Consensus size: 109
9296863 TGTCACGACA
* * *
9296873 TGTTGCTTGGGGTTGGGTTGTTATATTTGGAGGAAGTGTACTGTACTGTTAAGGTCACACGGGTC
1 TGTTGCATAGGGTTGGGTTGTTATATTTGGAGGAAGTGTACTGTACTGTTAAGGTCACACAGGTC
* *
9296938 GCCCAAGACGACTGTGGACCTACTAGTGGCTTTGCTAGATATAC
66 GCCCAAGACGACTGTGGACCTACTAGTGGCTTTGCCACATATAC
*
9296982 TGTTGCATAGGGTTGGGTTGTTATATTTGGAGGAAGTGTACTGTACTGTTAAGGTCGCACAGGTC
1 TGTTGCATAGGGTTGGGTTGTTATATTTGGAGGAAGTGTACTGTACTGTTAAGGTCACACAGGTC
*
9297047 GCCCAAGACGACTGTGGACCTACTGGTGGCTTTGCCACATATAC
66 GCCCAAGACGACTGTGGACCTACTAGTGGCTTTGCCACATATAC
9297091 TGTT
1 TGTT
9297095 ACTGGCAGCT
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
109 106 1.00
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.32
Consensus pattern (109 bp):
TGTTGCATAGGGTTGGGTTGTTATATTTGGAGGAAGTGTACTGTACTGTTAAGGTCACACAGGTC
GCCCAAGACGACTGTGGACCTACTAGTGGCTTTGCCACATATAC
Found at i:9297123 original size:26 final size:26
Alignment explanation
Indices: 9297087--9297141 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
9297077 TTTGCCACAT
*
9297087 ATACTGTTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
9297113 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
9297139 ATA
1 ATA
9297142 TTGGTGTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.35
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:9297286 original size:28 final size:28
Alignment explanation
Indices: 9297246--9297388 Score: 225
Period size: 28 Copynumber: 5.1 Consensus size: 28
9297236 TGTACTGCAT
9297246 TGTTACTGTATTGGGCTAAGGCCCACAC
1 TGTTACTGTATTGGGCTAAGGCCCACAC
* * *
9297274 TGTTACTATATTGGGTTAAGGCCCATAC
1 TGTTACTGTATTGGGCTAAGGCCCACAC
*
9297302 TGATT-CTGTATTGGTCTAAGGCCCACAC
1 TG-TTACTGTATTGGGCTAAGGCCCACAC
*
9297330 TGTTACTGTATTGGGCTAAAGCCCACAC
1 TGTTACTGTATTGGGCTAAGGCCCACAC
9297358 TGTTACTGTATTGGGCTAAGGCCCACAC
1 TGTTACTGTATTGGGCTAAGGCCCACAC
9297386 TGT
1 TGT
9297389 GCTGTCACTG
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
27 2 0.02
28 99 0.96
29 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.31
Consensus pattern (28 bp):
TGTTACTGTATTGGGCTAAGGCCCACAC
Found at i:9299235 original size:107 final size:108
Alignment explanation
Indices: 9299034--9299325 Score: 349
Period size: 107 Copynumber: 2.7 Consensus size: 108
9299024 AAAATGATCG
* * * * *
9299034 AAATA-CCCTCATAAGGTAAAAGGACTGAAATACCCTTATAGGGTAGAATGATCGAAATA-CCTC
1 AAATACCCCT-ATAAGGTAGAATGACTGAAATACCCTCATAGGGTAGAATGACCGAAATACCCCC
* *
9299097 ATAGGGTAGAATGACTAAAATACCCCCATAGGGTAGAATGACCA
65 ATAGGGTAGAATGACTAAAATACCCCCATAGGGTAAAATAACCA
* *
9299141 AAATACCCCTATAAGGTAGAATGACTGAAATACCCTCATAGAGTAGAATGACCAAAATACCCCCA
1 AAATACCCCTATAAGGTAGAATGACTGAAATACCCTCATAGGGTAGAATGACCGAAATACCCCCA
** * * *
9299206 TAGGGTAGAATGAC-CGAATATCCCTATAGGGTAAAATAACCG
66 TAGGGTAGAATGACTAAAATACCCCCATAGGGTAAAATAACCA
* * * * *
9299248 AAATACCCCCATAGGGTAGAATGACTGAAATACCC-CTATAGGGTAAAATAACTGAAATACCCCC
1 AAATACCCCTATAAGGTAGAATGACTGAAATACCCTC-ATAGGGTAGAATGACCGAAATACCCCC
* *
9299312 ATAGGATAAAATGA
65 ATAGGGTAGAATGA
9299326 TTGTTATACT
Statistics
Matches: 159, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
106 1 0.01
107 136 0.86
108 22 0.14
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (108 bp):
AAATACCCCTATAAGGTAGAATGACTGAAATACCCTCATAGGGTAGAATGACCGAAATACCCCCA
TAGGGTAGAATGACTAAAATACCCCCATAGGGTAAAATAACCA
Found at i:9299311 original size:54 final size:54
Alignment explanation
Indices: 9299021--9299325 Score: 355
Period size: 54 Copynumber: 5.7 Consensus size: 54
9299011 CCCCAAAATA
* * * * * * *
9299021 GGTAAAATGATCGAAATACCCTCATAAGGTAAAAGGACTGAAATACCCTTATAG
1 GGTAGAATGACCGAAATACCCCCATAGGGTAGAATGACTGAAATACCCCTATAG
* * * *
9299075 GGTAGAATGATCGAAATA-CCTCATAGGGTAGAATGACTAAAATACCCCCATAG
1 GGTAGAATGACCGAAATACCCCCATAGGGTAGAATGACTGAAATACCCCTATAG
* * *
9299128 GGTAGAATGACCAAAATACCCCTATAAGGTAGAATGACTGAAATA-CCCTCATAG
1 GGTAGAATGACCGAAATACCCCCATAGGGTAGAATGACTGAAATACCCCT-ATAG
* * * *
9299182 AGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCG-AATATCCCTATAG
1 GGTAGAATGACCGAAATACCCCCATAGGGTAGAATGACTGAAATACCCCTATAG
* *
9299235 GGTAAAATAACCGAAATACCCCCATAGGGTAGAATGACTGAAATACCCCTATAG
1 GGTAGAATGACCGAAATACCCCCATAGGGTAGAATGACTGAAATACCCCTATAG
* * * * *
9299289 GGTAAAATAACTGAAATACCCCCATAGGATAAAATGA
1 GGTAGAATGACCGAAATACCCCCATAGGGTAGAATGA
9299326 TTGTTATACT
Statistics
Matches: 220, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
53 91 0.41
54 129 0.59
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.20
Consensus pattern (54 bp):
GGTAGAATGACCGAAATACCCCCATAGGGTAGAATGACTGAAATACCCCTATAG
Found at i:9299334 original size:27 final size:27
Alignment explanation
Indices: 9299021--9299325 Score: 294
Period size: 27 Copynumber: 11.4 Consensus size: 27
9299011 CCCCAAAATA
* *
9299021 GGTAAAATGA-TCGAAATACCCTCATAA
1 GGTAAAATGACT-GAAATACCCCCATAG
* **
9299048 GGTAAAAGGACTGAAATACCCTTATAG
1 GGTAAAATGACTGAAATACCCCCATAG
* *
9299075 GGTAGAATGA-TCGAAATA-CCTCATAG
1 GGTAAAATGACT-GAAATACCCCCATAG
* *
9299101 GGTAGAATGACTAAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCATAG
* ** * *
9299128 GGTAGAATGACCAAAATACCCCTATAA
1 GGTAAAATGACTGAAATACCCCCATAG
* *
9299155 GGTAGAATGACTGAAATACCCTCATAG
1 GGTAAAATGACTGAAATACCCCCATAG
* * **
9299182 AGTAGAATGACCAAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCATAG
* * * *
9299209 GGTAGAATGACCG-AATATCCCTATAG
1 GGTAAAATGACTGAAATACCCCCATAG
* *
9299235 GGTAAAATAACCGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCATAG
* *
9299262 GGTAGAATGACTGAAATACCCCTATAG
1 GGTAAAATGACTGAAATACCCCCATAG
*
9299289 GGTAAAATAACTGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCATAG
*
9299316 GATAAAATGA
1 GGTAAAATGA
9299326 TTGTTATACT
Statistics
Matches: 236, Mismatches: 37, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
26 45 0.19
27 190 0.81
28 1 0.00
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACTGAAATACCCCCATAG
Found at i:9302606 original size:14 final size:14
Alignment explanation
Indices: 9302587--9302631 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
9302577 TAAGTTTTGG
9302587 TTCTTTTT-TTCTAT
1 TTCTTTTTATT-TAT
9302601 TTCTTTTTATTTAT
1 TTCTTTTTATTTAT
*
9302615 TTATTTTTATTGTAT
1 TTCTTTTTATT-TAT
9302630 TT
1 TT
9302632 GATTCTTCGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 21 0.75
15 7 0.25
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTCTTTTTATTTAT
Found at i:9303393 original size:62 final size:61
Alignment explanation
Indices: 9303279--9303414 Score: 148
Period size: 62 Copynumber: 2.2 Consensus size: 61
9303269 ATGGGCAATA
* * ** *
9303279 GACACGGGCGTGTGCCTAGGCCGTGTAACTCACTATTCTGGTATAAGACCACATGGCCAGG
1 GACACGGGTGTGTGCCTAGGCCGCGTAACTCACTATTCTGGTATAAGACCACACAGCCAAG
* * * * * *
9303340 GTCACGGGTGTGTGTCTTGGCCGCGTAACTTACTGTTTGTGGTATACA-ACCACACAGCCAAG
1 GACACGGGTGTGTGCCTAGGCCGCGTAACTCACT-ATTCTGGTATA-AGACCACACAGCCAAG
9303402 GACACGGGTGTGT
1 GACACGGGTGTGT
9303415 ACCCAAGTCA
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
61 28 0.46
62 32 0.52
63 1 0.02
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24
Consensus pattern (61 bp):
GACACGGGTGTGTGCCTAGGCCGCGTAACTCACTATTCTGGTATAAGACCACACAGCCAAG
Found at i:9304622 original size:28 final size:28
Alignment explanation
Indices: 9304590--9304659 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
9304580 AATTTTGAGT
*
9304590 CAAAACCATAAAATCTGAA-AAACAGTGG
1 CAAAACTATAAAAT-TGAATAAACAGTGG
*
9304618 CAAAACTATAAAATTTAATAAACAGTGG
1 CAAAACTATAAAATTGAATAAACAGTGG
9304646 CAAAACTATAAAAT
1 CAAAACTATAAAAT
9304660 ATAAAAAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 3 0.08
28 36 0.92
ACGTcount: A:0.56, C:0.14, G:0.10, T:0.20
Consensus pattern (28 bp):
CAAAACTATAAAATTGAATAAACAGTGG
Found at i:9306097 original size:29 final size:30
Alignment explanation
Indices: 9306036--9306133 Score: 82
Period size: 29 Copynumber: 3.3 Consensus size: 30
9306026 AATTTTTTAA
*
9306036 ATTTTAAAAAATAAAAAAAATTATGAAAATT
1 ATTTTAAAAAAT-AAAAAAATCATGAAAATT
* * *
9306067 ATTTTTAAAAAT-AAAAAATCATTAAAGTT
1 ATTTTAAAAAATAAAAAAATCATGAAAATT
9306096 A-TTTAAAAATGATAAAAAATAT-AT-AAAA--
1 ATTTTAAAAA--ATAAAAAA-ATCATGAAAATT
9306124 ATTTTAAAAA
1 ATTTTAAAAA
9306134 TTAATTAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
28 8 0.14
29 23 0.41
30 5 0.09
31 18 0.32
32 2 0.04
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (30 bp):
ATTTTAAAAAATAAAAAAATCATGAAAATT
Found at i:9306134 original size:29 final size:27
Alignment explanation
Indices: 9306034--9306133 Score: 85
Period size: 31 Copynumber: 3.4 Consensus size: 27
9306024 TTAATTTTTT
*
9306034 AAATTTTAAAAAATAAAAAAAATTATGAA
1 AAATTTTAAAAAATAAAAAATA-TAT-AA
*
9306063 AATTATTTTTAAAAATAAAAAATCAT-TAA
1 AA--ATTTTAAAAAATAAAAAAT-ATATAA
**
9306092 AGTTATTTAAAAATGATAAAAAATATATAA
1 AAAT-TTTAAAAA--ATAAAAAATATATAA
9306122 AAATTTTAAAAA
1 AAATTTTAAAAA
9306134 TTAATTAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
27 1 0.02
28 7 0.12
29 15 0.26
30 15 0.26
31 18 0.32
32 1 0.02
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (27 bp):
AAATTTTAAAAAATAAAAAATATATAA
Found at i:9306232 original size:17 final size:17
Alignment explanation
Indices: 9306206--9306239 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9306196 AGACAAATTC
*
9306206 AAAAACTAAAAGAAAGG
1 AAAAAATAAAAGAAAGG
*
9306223 AAAAAATAAATGAAAGG
1 AAAAAATAAAAGAAAGG
9306240 TTAAAATAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.18, T:0.09
Consensus pattern (17 bp):
AAAAAATAAAAGAAAGG
Found at i:9311075 original size:25 final size:25
Alignment explanation
Indices: 9311038--9311100 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
9311028 TTTTGTACAT
9311038 GTATGCTCACACGAGCTATAAATCG
1 GTATGCTCACACGAGCTATAAATCG
** *
9311063 GTATGCTTTCACGAGCTGTAAATCG
1 GTATGCTCACACGAGCTATAAATCG
9311088 GTATGCTCACACG
1 GTATGCTCACACG
9311101 TGTTGTGGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
GTATGCTCACACGAGCTATAAATCG
Found at i:9316398 original size:18 final size:19
Alignment explanation
Indices: 9316353--9316401 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
9316343 GAATATTTAC
*
9316353 ATAAAAATTAAACTAAGTAA
1 ATAAAAA-TAAACTAAATAA
9316373 A-AATAAATAAA-TAAATAA
1 ATAA-AAATAAACTAAATAA
9316391 ATAAAAATAAA
1 ATAAAAATAAA
9316402 AATAAAACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 14 0.54
19 8 0.31
20 4 0.15
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (19 bp):
ATAAAAATAAACTAAATAA
Found at i:9319637 original size:7 final size:7
Alignment explanation
Indices: 9319625--9319652 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
9319615 ATCAAGATGT
9319625 TGAATTA
1 TGAATTA
9319632 TGAATTA
1 TGAATTA
9319639 TGAATTA
1 TGAATTA
9319646 TGAATTA
1 TGAATTA
9319653 ATTATACATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (7 bp):
TGAATTA
Found at i:9321888 original size:15 final size:16
Alignment explanation
Indices: 9321870--9321903 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
9321860 ATTAGCTTGA
*
9321870 TTTAAA-TTATTATCT
1 TTTAAATTTAATATCT
9321885 TTTAAATTTAATATCT
1 TTTAAATTTAATATCT
9321901 TTT
1 TTT
9321904 CAGAATTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTAAATTTAATATCT
Found at i:9322290 original size:2 final size:2
Alignment explanation
Indices: 9322283--9322310 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
9322273 AGTCCATGTA
9322283 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9322311 GAAAGTCTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9326617 original size:26 final size:28
Alignment explanation
Indices: 9326583--9326645 Score: 94
Period size: 26 Copynumber: 2.3 Consensus size: 28
9326573 GAGAGAAAGT
9326583 AAAAGTTTTGGGA-AAAAACAAAAGG-A
1 AAAAGTTTTGGGAGAAAAACAAAAGGAA
* *
9326609 AAAAGTTTTGGGAGGAAAGCAAAAGGAA
1 AAAAGTTTTGGGAGAAAAACAAAAGGAA
9326637 AAAAGTTTT
1 AAAAGTTTT
9326646 AAGGGTTTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 13 0.39
27 10 0.30
28 10 0.30
ACGTcount: A:0.52, C:0.03, G:0.25, T:0.19
Consensus pattern (28 bp):
AAAAGTTTTGGGAGAAAAACAAAAGGAA
Found at i:9332213 original size:18 final size:17
Alignment explanation
Indices: 9332191--9332247 Score: 62
Period size: 18 Copynumber: 3.4 Consensus size: 17
9332181 GAATACATAC
9332191 ATATACTTTTATATTTT
1 ATATACTTTTATATTTT
* *
9332208 CATATAATTTAATATTTT
1 -ATATACTTTTATATTTT
* *
9332226 ATATA-TTTTGTAATTT
1 ATATACTTTTATATTTT
9332242 ATATAC
1 ATATAC
9332248 ACAAACTTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
16 13 0.39
17 5 0.15
18 15 0.45
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (17 bp):
ATATACTTTTATATTTT
Found at i:9333138 original size:109 final size:109
Alignment explanation
Indices: 9332971--9333287 Score: 514
Period size: 109 Copynumber: 2.9 Consensus size: 109
9332961 TAAAATTTTT
* * *
9332971 TTTCAAAATAAGGCAATGTTTTGGGTTTGGGAAATTTGAGAAAACATGCCCTAAGGTGCTAGGTG
1 TTTCAAAATAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
9333036 TCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
65 TCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
9333081 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
*
9333146 TGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
66 CGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
* * *
9333190 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* * *
9333254 CGA--TTTCTCGTTTAACCAAATTGCCAAATATCCT
66 CGATTTTTCTCGTTCAACCAAATAGCTAAATATCCT
9333288 CTTGAATTTT
Statistics
Matches: 196, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
106 28 0.14
108 24 0.12
109 117 0.60
110 27 0.14
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (109 bp):
TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
Found at i:9337445 original size:9 final size:9
Alignment explanation
Indices: 9337416--9337462 Score: 58
Period size: 9 Copynumber: 4.8 Consensus size: 9
9337406 CAAAAATAGG
9337416 AGAAAAAGAA
1 AGAAAAA-AA
9337426 AGAAGAAAAAA
1 AG-A-AAAAAA
9337437 AGAAAAAAA
1 AGAAAAAAA
9337446 AGAAAAAAA
1 AGAAAAAAA
9337455 AGGAAAAA
1 A-GAAAAA
9337463 GGAGAGGTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
9 16 0.47
10 9 0.26
11 5 0.15
12 4 0.12
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:9337451 original size:15 final size:16
Alignment explanation
Indices: 9337416--9337463 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
9337406 CAAAAATAGG
*
9337416 AGAAAAAGAAAGAAGA
1 AGAAAAAGAAAGAAAA
9337432 A-AAAAAGAAA-AAAA
1 AGAAAAAGAAAGAAAA
9337446 AGAAAAA-AAAGGAAAA
1 AGAAAAAGAAA-GAAAA
9337462 AG
1 AG
9337464 GAGAGGTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
14 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AGAAAAAGAAAGAAAA
Found at i:9337462 original size:11 final size:10
Alignment explanation
Indices: 9337416--9337462 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
9337406 CAAAAATAGG
*
9337416 AGAAAAAGAA
1 AGAAAAAAAA
9337426 AGAAGAAAAAA
1 AGAA-AAAAAA
9337437 AG-AAAAAAA
1 AGAAAAAAAA
9337446 AGAAAAAAAA
1 AGAAAAAAAA
*
9337456 GGAAAAA
1 AGAAAAA
9337463 GGAGAGGTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 8 0.24
10 18 0.55
11 7 0.21
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AGAAAAAAAA
Found at i:9338285 original size:14 final size:15
Alignment explanation
Indices: 9338259--9338287 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9338249 CTTTGAGTCA
9338259 AAAAAAATGAAAAAT
1 AAAAAAATGAAAAAT
9338274 AAAAAAAT-AAAAAT
1 AAAAAAATGAAAAAT
9338288 GGAGAGGCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (15 bp):
AAAAAAATGAAAAAT
Found at i:9340415 original size:88 final size:88
Alignment explanation
Indices: 9339434--9340387 Score: 1507
Period size: 88 Copynumber: 10.8 Consensus size: 88
9339424 ATGAAGTTAC
* ** * * *
9339434 AGATCTTGCCTTCCTGCATTAACAATGAAGCAGATCGAAGATACAAACCTTGCCTCTCTCGATTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
* * *
9339499 T-AGCGGAGCTGGTTCAAGACAAC
66 TGA-TGGAGCTGGTTGAAGACAAA
* *
9339522 AGATCTTGCCTTTCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGATTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
* * *
9339587 TGATTGAGCTAGTTGAAGACAAT
66 TGATGGAGCTGGTTGAAGACAAA
*
9339610 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTTGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
9339675 TGATGGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* * *
9339698 AGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCAAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
*
9339763 TGATAGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
*
9339786 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCAGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
*
9339851 TGATGGAGCTGGTTGAAGACAAC
66 TGATGGAGCTGGTTGAAGACAAA
* *
9339874 AGATCTTGCCTTCCTGCAATGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCAGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
9339939 TGATGGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* **
9339962 AGATCTTGTCTTCCTGCATTGACAATGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
*
9340027 TGATGGAGTTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* *
9340050 AGATCTTGCCTTCCTGCATTGACAGCGAAGTAGGTCGAAGACACAAACCTTGCATCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
*
9340115 TGATGAAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
*
9340138 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
* * *
9340203 TGGTAGAGCTGGTTGAAGACTAA
66 TGATGGAGCTGGTTGAAGACAAA
* *
9340226 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTACCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
*
9340291 TGATGGAGCTGGTTGAAGACAAC
66 TGATGGAGCTGGTTGAAGACAAA
* * * *
9340314 AGATCTTGCCTTCCTTCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
9340379 T-AGTGGAGC
66 TGA-TGGAGC
9340388 AGATCAAAGA
Statistics
Matches: 805, Mismatches: 59, Indels: 4
0.93 0.07 0.00
Matches are distributed among these distances:
87 1 0.00
88 803 1.00
89 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
TGATGGAGCTGGTTGAAGACAAA
Found at i:9340618 original size:132 final size:132
Alignment explanation
Indices: 9340378--9340658 Score: 463
Period size: 132 Copynumber: 2.1 Consensus size: 132
9340368 TCCCTCGGTT
*
9340378 GTAGTGGAGCAGATCAAAGATGGTAAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCAAAGATGGTAAATATTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * *
9340443 CATTGGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTCTGTCACTCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAG
9340508 CA
131 CA
* * * *
9340510 GTAGTGGGGCAGATCGAAGCTGGTGAATATTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCAAAGATGGTAAATATTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * *
9340575 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGTAGATTCTGTCCCCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAG
9340640 CA
131 CA
9340642 GTAGTGGAGCAGATCAA
1 GTAGTGGAGCAGATCAA
9340659 CAATAACGAA
Statistics
Matches: 136, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 136 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (132 bp):
GTAGTGGAGCAGATCAAAGATGGTAAATATTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
CATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAG
CA
Found at i:9342158 original size:2 final size:2
Alignment explanation
Indices: 9342153--9342187 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
9342143 GTATTATGCA
*
9342153 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9342188 CATTTTCATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9342465 original size:18 final size:17
Alignment explanation
Indices: 9342442--9342486 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
9342432 TGAATACATA
9342442 CATATACTTTTATATTTT
1 CATATA-TTTTATATTTT
*
9342460 CATATAATTTAATATTTT
1 CATAT-ATTTTATATTTT
9342478 -ATATATTTT
1 CATATATTTT
9342487 GTAACTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 4 0.17
17 4 0.17
18 15 0.62
19 1 0.04
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (17 bp):
CATATATTTTATATTTT
Found at i:9343384 original size:109 final size:109
Alignment explanation
Indices: 9343225--9343524 Score: 498
Period size: 109 Copynumber: 2.8 Consensus size: 109
9343215 AAATTTTTTT
* *
9343225 AAAATAAGGCAATGTTTTGGGTTTGGGAAATTTGAGAAAACATGCCCTAAGGTGCTGGGTGTCGA
1 AAAATAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGA
9343290 TTTTTCTCGTTCAACCAAATAACTAAATATCCTTTCAAAAATTTC
65 TTTTTCTCGTTCAACCAAATAACTAAATATCCTTTCAAAAATTTC
*
9343335 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTTGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
*
9343400 TTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTTC
66 TTTTCTCGTTCAACCAAATAACTAAATATCCTTTCAAAAATTTC
* * *
9343444 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTTCGA-
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
*
9343507 -TTTCTCGTTTAACCAAAT
66 TTTTCTCGTTCAACCAAAT
9343525 TGCCAAATAT
Statistics
Matches: 181, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
106 17 0.09
108 24 0.13
109 117 0.65
110 23 0.13
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (109 bp):
AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
TTTTCTCGTTCAACCAAATAACTAAATATCCTTTCAAAAATTTC
Found at i:9350508 original size:18 final size:17
Alignment explanation
Indices: 9350485--9350537 Score: 79
Period size: 18 Copynumber: 3.0 Consensus size: 17
9350475 ATGTATTATG
*
9350485 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
9350503 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
9350520 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
9350538 TTAATAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
17 5 0.15
18 28 0.85
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:9350712 original size:44 final size:45
Alignment explanation
Indices: 9350663--9350754 Score: 168
Period size: 44 Copynumber: 2.1 Consensus size: 45
9350653 TTGTACCTCT
*
9350663 ATTCCATTCAACCAAACACAAGAA-TACCATTATGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCATTATGCCTCTATTCC
9350707 ATTCCATTCAACCAAACAAAAGAATTACCATTATGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCATTATGCCTCTATTCC
9350752 ATT
1 ATT
9350755 ACAGCGAACC
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 23 0.50
45 23 0.50
ACGTcount: A:0.37, C:0.29, G:0.04, T:0.29
Consensus pattern (45 bp):
ATTCCATTCAACCAAACAAAAGAATTACCATTATGCCTCTATTCC
Found at i:9350765 original size:45 final size:44
Alignment explanation
Indices: 9350671--9350768 Score: 144
Period size: 45 Copynumber: 2.2 Consensus size: 44
9350661 CTATTCCATT
* * *
9350671 CAACCAAACACAAGAATACCATTATGCCTCTATTCCATTCCATT
1 CAACCAAACAAAAGAATACCATTATGCCTCTATTCCATTACATG
9350715 CAACCAAACAAAAGAATTACCATTATGCCTCTATTCCATTACA-G
1 CAACCAAACAAAAGAA-TACCATTATGCCTCTATTCCATTACATG
9350759 CGAACCAAAC
1 C-AACCAAAC
9350769 GTGCCGTTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
44 16 0.33
45 33 0.67
ACGTcount: A:0.40, C:0.31, G:0.06, T:0.23
Consensus pattern (44 bp):
CAACCAAACAAAAGAATACCATTATGCCTCTATTCCATTACATG
Found at i:9352011 original size:51 final size:51
Alignment explanation
Indices: 9351941--9352558 Score: 702
Period size: 51 Copynumber: 12.5 Consensus size: 51
9351931 GGGAGGAGGT
* *
9351941 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGCGGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
* * * *
9351992 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGGGATGGAGGTGGT
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
* * * *
9352043 GGTGGGGGAGACTTGTACTTGTAAGGATGCTTTGGAGGTGATGGTGGTGGT
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
* * *
9352094 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTTGGAGGTGATGGTGGTGGT
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
* *
9352145 GGTGGTGGAGACTTGTACTTATAAGGATGCTTTGGTGGTGATGGTGGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
* *
9352196 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
* *
9352247 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGCGGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
*
9352298 GGTGGTGGAGACTTATACTTGTAA--A--C-TGGAGATGGTG--GG-GGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGG-G-TGGTGATGGTGGTGGA
* * *** ** ** * * * *
9352343 GACT--T-G-TACTTGTAAGGGT--GCTTGGGT-GGTGATGGTGGGGGTGGG
1 G-GTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
* * *
9352388 GGT-G-GG-GACTTGTACTTGTAGGGGTGTTTGGGTGGTGATGGTGGT---
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
*
9352433 GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
* *
9352484 GGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGAGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
*
9352535 GGTGGTGGAGACTTATACTTGTAA
1 GGTGGTGGAGACTTGTACTTGTAA
9352559 ACAGGAGTTG
Statistics
Matches: 494, Mismatches: 51, Indels: 44
0.84 0.09 0.07
Matches are distributed among these distances:
42 12 0.02
43 2 0.00
44 5 0.01
45 27 0.05
46 7 0.01
47 8 0.02
48 53 0.11
51 380 0.77
ACGTcount: A:0.15, C:0.06, G:0.48, T:0.31
Consensus pattern (51 bp):
GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
Found at i:9352159 original size:153 final size:153
Alignment explanation
Indices: 9351938--9352558 Score: 812
Period size: 153 Copynumber: 4.2 Consensus size: 153
9351928 AACGGGAGGA
9351938 GGTGGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGCGGTGGAGGTGGTGGAGA
1 GGTGGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGCGGTGGAGGTGGTGGAGA
* *
9352003 CTTGTACTTGTAAGGGTGCTTGGGTGGGGATGGAGGTGGTGGTGGGGGAGACTTGTACTTGTAAG
66 CTTGTACTTGTAAGGATGCTTGGGTGGGGATGGAGGTGGAGGTGGGGGAGACTTGTACTTGTAAG
* *
9352068 GATGCTTTGGAGGTGATGGTGGT
131 GATGCTTGGGTGGTGATGGTGGT
* * * * *
9352091 GGTGGTGGTGGAGACTTGTACTTGTAAGGATGCTTTGGAGGTGATGGTGGTGGTGGTGGTGGAGA
1 GGTGGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGCGGTGGAGGTGGTGGAGA
* * * *
9352156 CTTGTACTTATAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGG-GACTTGTACTTGTAA
66 CTTGTACTTGTAAGGATGCTTGGGTGGGGATGGAGGTGGAGGTGG-GGGAGACTTGTACTTGTAA
*
9352220 GGGTGCTTGGGTGGTGATGGTGGT
130 GGATGCTTGGGTGGTGATGGTGGT
*
9352244 GGAGGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGCGGTGGAGGTGGTGGAGA
1 GGTGGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGCGGTGGAGGTGGTGGAGA
* * *
9352309 CTTATACTTGTAA--A--C-----TGGAGAT---GGT-G-GG-GGTGGAGACTTGTACTTGTAAG
66 CTTGTACTTGTAAGGATGCTTGGGTGGGGATGGAGGTGGAGGTGGGGGAGACTTGTACTTGTAAG
* *
9352359 GGTGCTTGGGTGGTGATGGTGGG
131 GATGCTTGGGTGGTGATGGTGGT
* * * * * *
9352382 GGTGGGGGTGGGGACTTGTACTTGTAGGGGTGTTTGGGTGGTGAT---GGTGGTGGTGGTGGGGA
1 GGTGGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGCGGTGGAGGTGGTGGAGA
* * *
9352444 CTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAG
66 CTTGTACTTGTAAGGATGCTTGGGTGGGGATGGAGGTGGAGGTGGGGGAGACTTGTACTTGTAAG
*
9352509 GATGCTTGGGTGGTGATGGTGGA
131 GATGCTTGGGTGGTGATGGTGGT
* *
9352532 GGAGGTGGTGGAGACTTATACTTGTAA
1 GGTGGTGGTGGAGACTTGTACTTGTAA
9352559 ACAGGAGTTG
Statistics
Matches: 409, Mismatches: 42, Indels: 37
0.84 0.09 0.08
Matches are distributed among these distances:
135 27 0.07
137 3 0.01
138 80 0.20
139 3 0.01
140 1 0.00
141 3 0.01
144 12 0.03
147 3 0.01
148 1 0.00
149 3 0.01
150 64 0.16
151 1 0.00
153 205 0.50
154 3 0.01
ACGTcount: A:0.15, C:0.06, G:0.48, T:0.31
Consensus pattern (153 bp):
GGTGGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGCGGTGGAGGTGGTGGAGA
CTTGTACTTGTAAGGATGCTTGGGTGGGGATGGAGGTGGAGGTGGGGGAGACTTGTACTTGTAAG
GATGCTTGGGTGGTGATGGTGGT
Found at i:9352503 original size:237 final size:238
Alignment explanation
Indices: 9352090--9352617 Score: 808
Period size: 237 Copynumber: 2.2 Consensus size: 238
9352080 GTGATGGTGG
* * * * *
9352090 TGGTGGTGGTGGAGACTTGTACTTGTAAGGATGCTTTGGAGGTGATGGTGGTGGTGGTGGTGGAG
1 TGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGGGGTGGGGGTGGAG
9352155 ACTTGTACTTATAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGGGACTTGTACTTGTAA
66 ACTTGTACTTATAAGGATGCTTTGGTGGTGATGGTGGT-G-GGTGGTGGGGACTTGTACTTGTAA
* * *
9352220 GGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGG
129 GGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGG
* *
9352285 TGATGGCGGTGGAGGTGGTGGAGACTTATACTTGTAAACTGGAGA
194 TGATGGCGGAGGAGGTGGTGGAGACTTATACTTGTAAACAGGAGA
* *
9352330 TGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGGTGGGG
1 TGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGGGGTGGGGGTGGAG
* * *
9352395 ACTTGTACTTGTAGGGGTG-TTTGGGTGGTGATGGTGGT-GGTGGTGGGGACTTGTACTTGTAAG
66 ACTTGTACTTATAAGGATGCTTT-GGTGGTGATGGTGGTGGGTGGTGGGGACTTGTACTTGTAAG
9352458 GATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGT
130 GATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGT
* *
9352523 GATGGTGGAGGAGGTGGTGGAGACTTATACTTGTAAACAGGAGT
195 GATGGCGGAGGAGGTGGTGGAGACTTATACTTGTAAACAGGAGA
* * * * * *
9352567 TGGTGGGGGAGGAGATTTGTACTTGTAAGGCTTCTTGTGTGGTGGTGGTGG
1 TGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGG
9352618 TGGAGAGTAG
Statistics
Matches: 264, Mismatches: 23, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
237 172 0.65
239 3 0.01
240 89 0.34
ACGTcount: A:0.15, C:0.06, G:0.47, T:0.31
Consensus pattern (238 bp):
TGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGGGGTGGGGGTGGAG
ACTTGTACTTATAAGGATGCTTTGGTGGTGATGGTGGTGGGTGGTGGGGACTTGTACTTGTAAGG
ATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTG
ATGGCGGAGGAGGTGGTGGAGACTTATACTTGTAAACAGGAGA
Found at i:9352670 original size:237 final size:237
Alignment explanation
Indices: 9352190--9352674 Score: 627
Period size: 237 Copynumber: 2.0 Consensus size: 237
9352180 TGGTGATGGT
* * *
9352190 GGTGGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGG
1 GGTGGTGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGG
* *
9352255 AGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGCGGTGGAGGTGGTGGAGACTTATACTTGT
66 AGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGCGGAGGAGGTGGTGGAGACTTATACTTGT
* * * *
9352320 AAACTGGAGATGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGT
131 AAACAGGAGATGGTGGGGGAGGAGACTTGTACTTGTAAGGCTGCTTGGGTGGTGATGGTGGGGGA
* *** ** * * * ** *
9352385 GGGGGTGGGGACTTGTACTTGTAGGGGTGTTTGGGTGGTGAT
196 GGGAGACCGGACGAGTACTGGTAGGGGAGCTTGAATGGTGAA
9352427 GGTGGTGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGG
1 GGTGGTGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGG
*
9352492 AGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGAGGAGGTGGTGGAGACTTATACTTGT
66 AGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGCGGAGGAGGTGGTGGAGACTTATACTTGT
* * * * * *
9352557 AAACAGGAGTTGGTGGGGGAGGAGATTTGTACTTGTAAGGCTTCTTGTGTGGTGGTGGTGGTGGA
131 AAACAGGAGATGGTGGGGGAGGAGACTTGTACTTGTAAGGCTGCTTGGGTGGTGATGGTGGGGGA
* * *
9352622 GAGTAGACCGGAGGAG-GC-GGT-GGTGGAGACTTGTAATGGT-AA
196 G-GGAGACCGGACGAGTACTGGTAGG-GGAG-CTTG-AATGGTGAA
9352664 GGTGGTGGTGG
1 GGTGGTGGTGG
9352675 GTACTTCTTA
Statistics
Matches: 213, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
235 2 0.01
236 5 0.02
237 196 0.92
238 10 0.05
ACGTcount: A:0.16, C:0.06, G:0.48, T:0.29
Consensus pattern (237 bp):
GGTGGTGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGG
AGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGCGGAGGAGGTGGTGGAGACTTATACTTGT
AAACAGGAGATGGTGGGGGAGGAGACTTGTACTTGTAAGGCTGCTTGGGTGGTGATGGTGGGGGA
GGGAGACCGGACGAGTACTGGTAGGGGAGCTTGAATGGTGAA
Found at i:9360720 original size:145 final size:145
Alignment explanation
Indices: 9360457--9360744 Score: 540
Period size: 145 Copynumber: 2.0 Consensus size: 145
9360447 GTTGTTTCTC
*
9360457 GCACCATGGCTGTGGCGAAGTATTGAAGTCTAGCAACAACTACCAGTGATGTTACTTGGTTAGTC
1 GCACCATGGCTGTGGCGAAGTATCGAAGTCTAGCAACAACTACCAGTGATGTTACTTGGTTAGTC
9360522 TCTCTACTAACAAAATTACAAATTCGTTCTACAAATCCACAGACTATTTGGCGTGACAACTCTAG
66 TCTCTACTAACAAAATTACAAATTCGTTCTACAAATCCACAGACTATTTGGCGTGACAACTCTAG
9360587 TGTAGTAGCGGTCTA
131 TGTAGTAGCGGTCTA
*
9360602 GCACCATGGCTGTGGCGAAGTATCGAAGTCTAGCAACAACTACCAGTGATGTTATTTGGTTAGTC
1 GCACCATGGCTGTGGCGAAGTATCGAAGTCTAGCAACAACTACCAGTGATGTTACTTGGTTAGTC
* *
9360667 TCTCTACTAACAAAATTACAAATTCGTTCTACAGATCCACATACTATTTGGCGTGACAACTCTAG
66 TCTCTACTAACAAAATTACAAATTCGTTCTACAAATCCACAGACTATTTGGCGTGACAACTCTAG
9360732 TGTAGTAGCGGTC
131 TGTAGTAGCGGTC
9360745 ATTGCTAATC
Statistics
Matches: 139, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 139 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (145 bp):
GCACCATGGCTGTGGCGAAGTATCGAAGTCTAGCAACAACTACCAGTGATGTTACTTGGTTAGTC
TCTCTACTAACAAAATTACAAATTCGTTCTACAAATCCACAGACTATTTGGCGTGACAACTCTAG
TGTAGTAGCGGTCTA
Found at i:9361049 original size:13 final size:13
Alignment explanation
Indices: 9361031--9361055 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9361021 TGTTAGTAAT
9361031 CAGTTAGTCATAG
1 CAGTTAGTCATAG
9361044 CAGTTAGTCATA
1 CAGTTAGTCATA
9361056 CAATTATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
CAGTTAGTCATAG
Found at i:9361956 original size:3 final size:3
Alignment explanation
Indices: 9361948--9361975 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
9361938 TATATAAATT
9361948 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
9361976 CAAATATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:9363070 original size:17 final size:17
Alignment explanation
Indices: 9363050--9363090 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
9363040 TAGAAGAGCC
*
9363050 CGCCAAACCCTAGAGTT
1 CGCCAAAACCTAGAGTT
*
9363067 CGCCAAAACCTGGAGTT
1 CGCCAAAACCTAGAGTT
9363084 CGCCAAA
1 CGCCAAA
9363091 TGGCGACTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.32, C:0.34, G:0.20, T:0.15
Consensus pattern (17 bp):
CGCCAAAACCTAGAGTT
Found at i:9368866 original size:20 final size:20
Alignment explanation
Indices: 9368803--9368877 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 20
9368793 CATAACAGAG
* * *
9368803 GCACCGAAGTGCAGACAAAT
1 GCACCGAAGTGCAAATAGAT
*
9368823 GCA-CGAATGTGC-AATCAGAG
1 GCACCGAA-GTGCAAAT-AGAT
9368843 GCACCGAAGTGCAAATAGAT
1 GCACCGAAGTGCAAATAGAT
* *
9368863 GCACCAAAGTACAAA
1 GCACCGAAGTGCAAA
9368878 CTCATGATAC
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
19 5 0.11
20 32 0.73
21 7 0.16
ACGTcount: A:0.41, C:0.23, G:0.24, T:0.12
Consensus pattern (20 bp):
GCACCGAAGTGCAAATAGAT
Found at i:9370249 original size:23 final size:24
Alignment explanation
Indices: 9370225--9370275 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 24
9370215 TGAGAGAATA
*
9370225 ATTTTCTTTTTTTAGTAATACTAATC
1 ATTTTCTTTGTTTAGTAATACT-A-C
9370251 ATTTTCTTTGTTTAGTAATACTAC
1 ATTTTCTTTGTTTAGTAATACTAC
9370275 A
1 A
9370276 ACTAGAATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 2 0.08
25 1 0.04
26 21 0.88
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (24 bp):
ATTTTCTTTGTTTAGTAATACTAC
Found at i:9372140 original size:27 final size:26
Alignment explanation
Indices: 9372103--9372221 Score: 132
Period size: 27 Copynumber: 4.4 Consensus size: 26
9372093 GAGGCCCAAA
*
9372103 ATAGGTAAAATGATCGAAATACCCCT
1 ATAGGTAAAATGACCGAAATACCCCT
* *
9372129 ATAGAGTAAAATGACTGAAATA-CCTT
1 ATAG-GTAAAATGACCGAAATACCCCT
*
9372155 CATAGGATAAAATGACCGAAATACACCT
1 -ATAGG-TAAAATGACCGAAATACCCCT
* *
9372183 ATAGGGTAAAACGACCGAAATACCCCC
1 ATA-GGTAAAATGACCGAAATACCCCT
9372210 ATAGGGTAAAAT
1 ATA-GGTAAAAT
9372222 AACTGTTATA
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
26 8 0.10
27 66 0.85
28 4 0.05
ACGTcount: A:0.45, C:0.18, G:0.17, T:0.20
Consensus pattern (26 bp):
ATAGGTAAAATGACCGAAATACCCCT
Found at i:9372184 original size:54 final size:53
Alignment explanation
Indices: 9372103--9372221 Score: 157
Period size: 54 Copynumber: 2.2 Consensus size: 53
9372093 GAGGCCCAAA
* * * * **
9372103 ATAGGTAAAATGATCGAAATACCCCTATAGAGTAAAATGACTGAAATACCTTC
1 ATAGGTAAAATGACCGAAATACACCTATAGAGTAAAACGACCGAAATACCCCC
*
9372156 ATAGGATAAAATGACCGAAATACACCTATAGGGTAAAACGACCGAAATACCCCC
1 ATAGG-TAAAATGACCGAAATACACCTATAGAGTAAAACGACCGAAATACCCCC
9372210 ATAGGGTAAAAT
1 ATA-GGTAAAAT
9372222 AACTGTTATA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
53 5 0.09
54 50 0.88
55 2 0.04
ACGTcount: A:0.45, C:0.18, G:0.17, T:0.20
Consensus pattern (53 bp):
ATAGGTAAAATGACCGAAATACACCTATAGAGTAAAACGACCGAAATACCCCC
Found at i:9372280 original size:26 final size:25
Alignment explanation
Indices: 9372247--9372303 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
9372237 AGGAGATGAA
*
9372247 ATGACTGTTATGGC-CTTATGTTATGT
1 ATGACTGTT-TGGCTC-TATGATATGT
*
9372273 ATGACTGTTTTGCTCTATGATATGT
1 ATGACTGTTTGGCTCTATGATATGT
9372298 ATGACT
1 ATGACT
9372304 ATGATTGAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 18 0.64
26 10 0.36
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.46
Consensus pattern (25 bp):
ATGACTGTTTGGCTCTATGATATGT
Found at i:9373195 original size:25 final size:25
Alignment explanation
Indices: 9373162--9373211 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
9373152 AAAGACGGGT
9373162 TTTCAAAAGGTAAATGTTTTCAAAG
1 TTTCAAAAGGTAAATGTTTTCAAAG
9373187 TTTCAAAAGGTAAATGTTTTCAAAG
1 TTTCAAAAGGTAAATGTTTTCAAAG
9373212 ACACCACGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (25 bp):
TTTCAAAAGGTAAATGTTTTCAAAG
Found at i:9374455 original size:15 final size:15
Alignment explanation
Indices: 9374437--9374481 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
9374427 TATAACATTA
9374437 TTTTATTTTTCTAAC
1 TTTTATTTTTCTAAC
* *
9374452 TTTTATTTTCCT-AT
1 TTTTATTTTTCTAAC
9374466 TATTTATTTTTCTAAC
1 T-TTTATTTTTCTAAC
9374482 AGCTAGAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 2 0.08
15 21 0.88
16 1 0.04
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTATTTTTCTAAC
Found at i:9374933 original size:31 final size:32
Alignment explanation
Indices: 9374871--9374935 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 32
9374861 GTATGGAAAA
* * *
9374871 ATTAGATTAATTTATATTTTATATATCATTAT
1 ATTAAATTAATTTAAATATTATATATCATTAT
* *
9374903 ATTAAATT-ATTTAAATATTATTTATTATTAT
1 ATTAAATTAATTTAAATATTATATATCATTAT
9374934 AT
1 AT
9374936 CTTTTAATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
31 21 0.75
32 7 0.25
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (32 bp):
ATTAAATTAATTTAAATATTATATATCATTAT
Found at i:9378676 original size:25 final size:29
Alignment explanation
Indices: 9378624--9378677 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
9378614 TAACATCATT
*
9378624 TTATGTTTATATGCTATATACAGAAATAA
1 TTATGTTTATATGCAATATACAGAAATAA
9378653 TTATGTTTAT-T-CAATATA-A-AAATAA
1 TTATGTTTATATGCAATATACAGAAATAA
9378678 ATTGATGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 6 0.25
26 1 0.04
27 6 0.25
28 1 0.04
29 10 0.42
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.43
Consensus pattern (29 bp):
TTATGTTTATATGCAATATACAGAAATAA
Found at i:9381067 original size:87 final size:89
Alignment explanation
Indices: 9380958--9381647 Score: 511
Period size: 87 Copynumber: 7.4 Consensus size: 89
9380948 GACATAATGG
* * * * *
9380958 GGTGGTGGTGGTGGAGGAGACTTGTATTTGTAAAC-T-GGAGGAGGAGGTGGTGGAGACTTGTAC
1 GGTGGTGGTGGTGGGGGAGACTTGTACTTGTAAACTTGGGAGGTGGTGGGGGTGGAGACTTGTAC
*
9381021 TTGTAAGGGTGCTTGGGGGGTGAT
66 TTGTAAGGGTGCTTGGGTGGTGAT
* * ** * *
9381045 GGTGGGGGTGGTGGGGGTGACTTGTACTTGTAGGGGTGCTTGGGTGGTGACGGTGGGGGTGGGGA
1 GGTGGTGGTGGTGGGGGAGACTTGTACTTGTA----AACTTGGGAGGT---GGTGGGGGTGGAGA
*
9381110 CTTGTACTTGTAAGGGTGCTTGGGTGGTGAC
59 CTTGTACTTGTAAGGGTGCTTGGGTGGTGAT
* * * * *
9381141 GGTGGTGGTGGTGGGGGGGACTTGTACTTGTAGGGATGCTTTGGTGGGGATGGTGGTGGTGGTG-
1 GGTGGTGGTGGTGGGGGAGACTTGTACTTGTA---A-AC-TTGG-GAGG-TGGTGGGGGTGGAGA
* * * *
9381205 GTGGGGACTTGTACTTGTAGGGATGCTTAGGTGGTGAT
59 CT-TGTACTTGTA-----AGGG-TGCTTGGGTGGTGAT
*
9381243 GGTGGTGGTGGT---GGAGACTTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGG
1 GGTGGTGGTGGTGGGGGAGACTTGTACTTGTAA--A--C--T--TGG-GA-GGTGGT-G-GG-GG
*
9381305 TGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGAT
53 TGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGAT
* * * *
9381342 GGAGGTGGAGGTGGTGGAGACTTATACTTGTAAAC-T-GGAGGTGGTGGGGGTGGAGACTTGTAC
1 GGTGGTGGTGGTGGGGGAGACTTGTACTTGTAAACTTGGGAGGTGGTGGGGGTGGAGACTTGTAC
*
9381405 TTGTAAGGGTGCTTGGGTGGTGAC
66 TTGTAAGGGTGCTTGGGTGGTGAT
* * * *
9381429 GGAGGTGGAGGTGGTGGAGACTTATACTTGTAAAC-T-GGAGGTGGTGGGGGTGGAGACTTGTAC
1 GGTGGTGGTGGTGGGGGAGACTTGTACTTGTAAACTTGGGAGGTGGTGGGGGTGGAGACTTGTAC
9381492 TTGTAAGGGTGCTTGGGTGGTGAT
66 TTGTAAGGGTGCTTGGGTGGTGAT
* * * ** *
9381516 GGTGGGGGTGG-GGGTGGCGACTTGTACTTGTAGGGGTGTTTAGGTGGTGATGGTGGTGGTGGTG
1 GGTGGTGGTGGTGGG-GGAGACTTGTACTTGTA--------AACTTGG-GA-GGTGGTGGGGGTG
* *
9381580 GGGACTTGTACTTGTAAGGATGCTTGGGTGGTGAT
55 GAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGAT
* *
9381615 GGTGGTGGAGGTGGAGGAGACTTGTACTTGTAA
1 GGTGGTGGTGGTGGGGGAGACTTGTACTTGTAA
9381648 GGATGCTTGG
Statistics
Matches: 497, Mismatches: 58, Indels: 92
0.77 0.09 0.14
Matches are distributed among these distances:
86 2 0.00
87 174 0.35
88 2 0.00
89 1 0.00
90 6 0.01
91 3 0.01
92 2 0.00
93 5 0.01
95 5 0.01
96 93 0.19
97 5 0.01
98 6 0.01
99 111 0.22
100 9 0.02
101 4 0.01
102 50 0.10
103 3 0.01
104 1 0.00
105 14 0.03
106 1 0.00
ACGTcount: A:0.14, C:0.07, G:0.49, T:0.30
Consensus pattern (89 bp):
GGTGGTGGTGGTGGGGGAGACTTGTACTTGTAAACTTGGGAGGTGGTGGGGGTGGAGACTTGTAC
TTGTAAGGGTGCTTGGGTGGTGAT
Done.