Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 33 of 208
Found at i:9381068 original size:45 final size:46
Alignment explanation
Indices: 9381015--9381679 Score: 368
Period size: 51 Copynumber: 14.0 Consensus size: 46
9381005 TGGTGGAGAC
*
9381015 TTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGGGGTGGTGGGGGTG
1 TTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGT--GGG-G
* * **
9381064 ACTTGTACTTGTAGGGGTGCTTGGGTGGTGACGGTGGGGGTGG-GGAC
1 --TTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGTGGGG
* *
9381111 TTGTACTTGTAAGGGTGCTTGGGTGGTGACGGTGGTGGTGGTGGGGGGG
1 TTGTACTTGTAAGGGTGCTTGGGTGGTGA---TGGTGGGGGTGGTGGGG
* *
9381160 ACTTGTACTTGT-AGGGATGCTTTGGTGGGGATGGTGGTGGTGGTGGTGGGG
1 --TTGTACTTGTAAGGG-TGCTTGGGTGGTGATGGT-G-GG-GGTGGTGGGG
* * *
9381211 ACTTGTACTTGT-AGGGATGCTTAGGTGGTGATGGTGGTGGTGGTGGAGAC
1 --TTGTACTTGTAAGGG-TGCTTGGGTGGTGATGGTGGGGGTGGTGG-G-G
* * *
9381261 TTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGGG
1 TTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT-G-GG-GGTGGTGGGG
* *
9381310 ACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGAGGTGGAGGTGGTGGAGAC
1 --TTGTACTTGTAAGGGTGCTTGGGTGGTGAT---GGTGGGGGTGGTGG-G-G
* * * * **
9381363 TTATACTTGTAA----AC-T-GG-AG-G-TGGTGGGGGTGG-AGAC
1 TTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGTGGGG
* * *
9381399 TTGTACTTGTAAGGGTGCTTGGGTGGTGACGGAGGTGGAGGTGGTGGAGAC
1 TTGTACTTGTAAGGGTGCTTGGGTGGTGA---TGGTGGGGGTGGTGG-G-G
* * * * **
9381450 TTATACTTGTAA----AC-T-GG-AG-G-TGGTGGGGGTGG-AGAC
1 TTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGTGGGG
*
9381486 TTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGGTGGCGAC
1 TTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGT---GGTGG-G-G
* * * *
9381537 TTGTACTTGTAGGGGTGTTTAGGTGGTGATGGTGGTGGTGGTGGGG
1 TTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGTGGGG
* * *
9381583 ACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGAC
1 --TTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT-G-GG-GGTGGTGG-G-G
* * *
9381636 TTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGG
1 TTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGTGG
9381680 TGGAGACTTA
Statistics
Matches: 486, Mismatches: 68, Indels: 123
0.72 0.10 0.18
Matches are distributed among these distances:
36 24 0.05
38 2 0.00
39 20 0.04
40 2 0.00
41 2 0.00
42 5 0.01
43 4 0.01
44 4 0.01
45 42 0.09
46 2 0.00
47 3 0.01
48 102 0.21
49 13 0.03
50 10 0.02
51 244 0.50
52 3 0.01
53 1 0.00
54 3 0.01
ACGTcount: A:0.14, C:0.06, G:0.49, T:0.31
Consensus pattern (46 bp):
TTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGTGGGG
Found at i:9381076 original size:51 final size:51
Alignment explanation
Indices: 9381003--9381374 Score: 446
Period size: 51 Copynumber: 7.5 Consensus size: 51
9380993 TGGAGGAGGA
* * *
9381003 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGGGGT
1 GGTGGGGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * *
9381054 GGTGGGGGTGACTTGTACTTGTAGGGGTGCTTGGGTGGTGACGGT-G-GG-
1 GGTGGGGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
*
9381102 GGT--GGG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGTGGTGGT
1 GGTGGGGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * *
9381150 GGTGGGGGGGACTTGTACTTGT-AGGGATGCTTTGGTGGGGATGGTGGTGGT
1 GGTGGGGGAGACTTGTACTTGTAAGGG-TGCTTGGGTGGTGATGGTGGTGGT
*
9381201 GGTGGTGGG-GACTTGTACTTGT-AGGGATGCTTAGGTGGTGATGGTGGTGGT
1 GGTGG-GGGAGACTTGTACTTGTAAGGG-TGCTTGGGTGGTGATGGTGGTGGT
* * * *
9381252 GGT---GGAGACTTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGA
1 GGTGGGGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* *
9381300 GGTGGTGGG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGAGGTGGA
1 GGTGG-GGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* *
9381351 GGTGGTGGAGACTTATACTTGTAA
1 GGTGGGGGAGACTTGTACTTGTAA
9381375 ACTGGAGGTG
Statistics
Matches: 285, Mismatches: 21, Indels: 30
0.85 0.06 0.09
Matches are distributed among these distances:
45 35 0.12
46 4 0.01
47 4 0.01
48 43 0.15
49 5 0.02
50 10 0.04
51 179 0.63
52 5 0.02
ACGTcount: A:0.13, C:0.06, G:0.49, T:0.31
Consensus pattern (51 bp):
GGTGGGGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
Found at i:9381385 original size:99 final size:98
Alignment explanation
Indices: 9381000--9381698 Score: 579
Period size: 99 Copynumber: 7.3 Consensus size: 98
9380990 AACTGGAGGA
* * * * *
9381000 GGAGGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGGGGTGGTGGGGGTGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGAGA
* * **
9381065 CTTGTACTTGT--A-GG-GGTGCTTGGGTGGTGAC
66 CTTGTACTTGTAAATGGAGGTG-GT-GATGGTGGT
* * * * *
9381096 GGTGGGGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGTGGTGGTGGTGGGGGGGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGAGA
* ** *
9381161 CTTGTACTTGTAGGGATGCTTTGGTGGGGATGGTGGT
66 CTTGTACTTGTA--AATG--GAGGTGGTGATGGTGGT
* *
9381198 GGTGGTGGTGGGGACTTGTACTTGT-AGGGATGCTTAGGTGGTGA---TGGTGGTGGTGGTGGAG
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGG-TGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGAG
* **
9381259 ACTTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGT
65 ACTTGTACTTGTAA--ATG--GAGGTGGTGATGGTGGT
* *
9381297 GGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGAGGTGGAGGTGGTGGAGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGAGA
*
9381362 CTTATACTTGTAAACTGGAGGTGGTG--GG-GGT
66 CTTGTACTTGTAAA-TGGAGGTGGTGATGGTGGT
* * *
9381393 GGA---------GACTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGAGGTGGAGGTGGTGGAGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGAGA
*
9381449 CTTATACTTGTAAACTGGAGGTGGTG--GG-GGT
66 CTTGTACTTGTAAA-TGGAGGTGGTGATGGTGGT
* * *
9381480 GGA---------GACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGGTGGCGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGAGA
** *
9381536 CTTGTACTTGTAGGGGTGTTTAGGTGGTGATGGTGGT
66 CTTGTACTTGTA--AATG--GAGGTGGTGATGGTGGT
* * *
9381573 ---GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGAGA
9381635 CTTGTACTTGTAAGGATGCTTG-GGTGGTGATGGTGGT
66 CTTGTACTTGTAA--ATG---GAGGTGGTGATGGTGGT
* *
9381672 GGAGGTGGTGGAGACTTATACTTGTAA
1 GGAGGTGGTGGGGACTTGTACTTGTAA
9381699 ACAGGAGTTG
Statistics
Matches: 515, Mismatches: 50, Indels: 70
0.81 0.08 0.11
Matches are distributed among these distances:
87 144 0.28
88 2 0.00
90 8 0.02
92 2 0.00
93 3 0.01
96 75 0.15
97 2 0.00
99 168 0.33
100 8 0.02
101 7 0.01
102 92 0.18
104 4 0.01
ACGTcount: A:0.14, C:0.07, G:0.49, T:0.31
Consensus pattern (98 bp):
GGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGAGA
CTTGTACTTGTAAATGGAGGTGGTGATGGTGGT
Found at i:9381394 original size:36 final size:36
Alignment explanation
Indices: 9381341--9381497 Score: 125
Period size: 36 Copynumber: 3.9 Consensus size: 36
9381331 TGGGTGGTGA
* *
9381341 TGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAAC
1 TGGAGGTGGTGGGGGTGGAGACTTATACTTGTAAAC
* *
9381377 TGGAGGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGC
1 TGGAGGTGGTGGGGGTGGAGACTTATACTTGTAA----AC
*
9381417 TTGGGTGGTGACGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAAC
1 -----T-G-GA-GGTGGTGG--G-GGTGGAGACTTATACTTGTAAAC
*
9381464 TGGAGGTGGTGGGGGTGGAGACTTGTACTTGTAA
1 TGGAGGTGGTGGGGGTGGAGACTTATACTTGTAA
9381498 GGGTGCTTGG
Statistics
Matches: 97, Mismatches: 9, Indels: 30
0.71 0.07 0.22
Matches are distributed among these distances:
36 51 0.53
37 1 0.01
39 7 0.07
40 3 0.03
41 1 0.01
42 1 0.01
45 1 0.01
46 1 0.01
47 3 0.03
48 7 0.07
50 1 0.01
51 20 0.21
ACGTcount: A:0.20, C:0.08, G:0.45, T:0.28
Consensus pattern (36 bp):
TGGAGGTGGTGGGGGTGGAGACTTATACTTGTAAAC
Found at i:9381762 original size:324 final size:324
Alignment explanation
Indices: 9381144--9381750 Score: 984
Period size: 324 Copynumber: 1.9 Consensus size: 324
9381134 TGGTGACGGT
* * * *
9381144 GGTGGTGGTGGGGGGGACTTGTACTTGTAGGGATGCTTTGGTGGGGATGGTGGTGGTGGTGGTGG
1 GGTGGTGGTGGGGGAGACTTGTACTTGTAGGGATGCTTGGGTGGGGATGGTGGGGGTGGGGGTGG
* *
9381209 GGACTTGTACTTGTAGGGATGCTTAGGTGGTGATGGTGGTGGTGGTGGAGACTTGTATTTGTAAG
66 CGACTTGTACTTGTAGGGATGCTTAGGTGGTGATGGTGGTGGTGGTGGAGACTTGTACTTGTAAG
* * * *
9381274 GATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGT
131 GATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGT
* *
9381339 GATGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACTGGAGGTGGTGGGGGTGGAGACTTGTA
196 GATGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACAGGAGGTGGTGGGGGAGGAGACTTGTA
9381404 CTTGTAAGGGTGCTTGGGTGGTGACGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACTGGA
261 CTTGTAAGGGTGCTTGGGTGGTGACGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACTGGA
*
9381468 GGTGGTGG-GGGTGGAGACTTGTACTTGTAAGGG-TGCTTGGGTGGTGATGGTGGGGGTGGGGGT
1 GGTGGTGGTGGG-GGAGACTTGTACTTGT-AGGGATGCTTGGGTGGGGATGGTGGGGGTGGGGGT
* * *
9381531 GGCGACTTGTACTTGTAGGGGTGTTTAGGTGGTGATGGTGGTGGTGGTGGGGACTTGTACTTGTA
64 GGCGACTTGTACTTGTAGGGATGCTTAGGTGGTGATGGTGGTGGTGGTGGAGACTTGTACTTGTA
9381596 AGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTG
129 AGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTG
* * *
9381661 GTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTAAACAGGAGTTGGTGGGGGAGGAGATTTG
194 GTGATGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACAGGAGGTGGTGGGGGAGGAGACTTG
* * *
9381726 TACTTGTAAGGTTTCTTGTGTGGTG
259 TACTTGTAAGGGTGCTTGGGTGGTG
9381751 GTGGTGGTGG
Statistics
Matches: 259, Mismatches: 22, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
323 3 0.01
324 252 0.97
325 4 0.02
ACGTcount: A:0.15, C:0.06, G:0.47, T:0.31
Consensus pattern (324 bp):
GGTGGTGGTGGGGGAGACTTGTACTTGTAGGGATGCTTGGGTGGGGATGGTGGGGGTGGGGGTGG
CGACTTGTACTTGTAGGGATGCTTAGGTGGTGATGGTGGTGGTGGTGGAGACTTGTACTTGTAAG
GATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGT
GATGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACAGGAGGTGGTGGGGGAGGAGACTTGTA
CTTGTAAGGGTGCTTGGGTGGTGACGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACTGGA
Found at i:9386740 original size:15 final size:16
Alignment explanation
Indices: 9386720--9386755 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
9386710 TTGTTTGATA
*
9386720 AAATTATT-TTTTTTT
1 AAATTATTGATTTTTT
9386735 AAATTATTGATTTTTT
1 AAATTATTGATTTTTT
9386751 AAATT
1 AAATT
9386756 TAATCCTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (16 bp):
AAATTATTGATTTTTT
Found at i:9389085 original size:122 final size:122
Alignment explanation
Indices: 9388868--9389109 Score: 412
Period size: 122 Copynumber: 2.0 Consensus size: 122
9388858 AAATGTTTGT
* *
9388868 CAATTAAGCACAAGTAGACAAGAATACACTTAAGCAAAAGAAAGACAATAAGAGCTCACAAGTGT
1 CAATTAAGCACAAATAGACAAGAACACACTTAAGCAAAAGAAAGACAATAAGAGCTCACAAGTGT
*
9388933 GTACAAGAGAATTATGGAAGTATTGAGTACAAAGGTTGTTTGATTGATAATTTTTTC
66 GTACAAGAGAATTATGCAAGTATTGAGTACAAAGGTTGTTTGATTGATAATTTTTTC
* ** * *
9388990 CAATTAAGCACAAATATACAAGAACACACTTGGGCAAAAGAAAGACGATAAGAGCTCATAAGTGT
1 CAATTAAGCACAAATAGACAAGAACACACTTAAGCAAAAGAAAGACAATAAGAGCTCACAAGTGT
9389055 GTACAAGAGAATTATGCAAGTATTGAGTACAAAGGTTGTTTGATTGATAATTTTT
66 GTACAAGAGAATTATGCAAGTATTGAGTACAAAGGTTGTTTGATTGATAATTTTT
9389110 GCTTCAATAT
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
122 112 1.00
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.26
Consensus pattern (122 bp):
CAATTAAGCACAAATAGACAAGAACACACTTAAGCAAAAGAAAGACAATAAGAGCTCACAAGTGT
GTACAAGAGAATTATGCAAGTATTGAGTACAAAGGTTGTTTGATTGATAATTTTTTC
Found at i:9393140 original size:9 final size:9
Alignment explanation
Indices: 9393128--9393172 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
9393118 ACTTTTTAAT
9393128 TAATTTTTA
1 TAATTTTTA
9393137 TAA-TTTTA
1 TAATTTTTA
9393145 TAATTTTTAA
1 TAATTTTT-A
*
9393155 TATTTTTTTA
1 TA-ATTTTTA
9393165 TAATTTTT
1 TAATTTTT
9393173 TGTATGTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
8 8 0.26
9 12 0.39
10 6 0.19
11 5 0.16
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TAATTTTTA
Found at i:9393172 original size:10 final size:10
Alignment explanation
Indices: 9393131--9393173 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
9393121 TTTTAATTAA
9393131 TTTTTATAA-
1 TTTTTATAAT
9393140 -TTTTATAAT
1 TTTTTATAAT
* *
9393149 TTTTAATATT
1 TTTTTATAAT
9393159 TTTTTATAAT
1 TTTTTATAAT
9393169 TTTTT
1 TTTTT
9393174 GTATGTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
8 8 0.29
10 20 0.71
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:9406629 original size:19 final size:19
Alignment explanation
Indices: 9406585--9406627 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
9406575 CATCCATGAA
9406585 AGTAAAGCTTGAGAAAAAC
1 AGTAAAGCTTGAGAAAAAC
9406604 AGTAAAGCTTGAGAAAAAC
1 AGTAAAGCTTGAGAAAAAC
9406623 A-TAAA
1 AGTAAA
9406628 AGTAGAGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.17
19 20 0.83
ACGTcount: A:0.56, C:0.09, G:0.19, T:0.16
Consensus pattern (19 bp):
AGTAAAGCTTGAGAAAAAC
Found at i:9406945 original size:21 final size:21
Alignment explanation
Indices: 9406919--9406960 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9406909 AGAGAAAAAT
*
9406919 AAAAACCT-TAGAAAATCTAAA
1 AAAAACCTAAAGAAAA-CTAAA
9406940 AAAAACCTAAAGAAAACTAAA
1 AAAAACCTAAAGAAAACTAAA
9406961 CCTAAATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.67, C:0.14, G:0.05, T:0.14
Consensus pattern (21 bp):
AAAAACCTAAAGAAAACTAAA
Found at i:9407164 original size:22 final size:22
Alignment explanation
Indices: 9407133--9407174 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
9407123 ACAAAAAGTA
*
9407133 ATATCACGATACCTGGAGGAGG
1 ATATCACGATACCTCGAGGAGG
* *
9407155 ATATCGCGATATCTCGAGGA
1 ATATCACGATACCTCGAGGA
9407175 CTGTTGAAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (22 bp):
ATATCACGATACCTCGAGGAGG
Found at i:9408772 original size:24 final size:24
Alignment explanation
Indices: 9408745--9408799 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
9408735 AAAGAGCCTA
**
9408745 TAACGGGTAGCTCCAAAGATCAAT
1 TAACGGGTAGCTCCAAAGAGAAAT
* **
9408769 TAACGAGTAGCTCTGAAGAGAAAT
1 TAACGGGTAGCTCCAAAGAGAAAT
9408793 TAACGGG
1 TAACGGG
9408800 AAACACCGAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.20
Consensus pattern (24 bp):
TAACGGGTAGCTCCAAAGAGAAAT
Found at i:9419118 original size:26 final size:27
Alignment explanation
Indices: 9419083--9419148 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 27
9419073 AAGCGAGCAC
*
9419083 TAAT-GGGAAGCTCACA-AAGAGTC-TT
1 TAATCGGGAAGCTCA-AGAAGAGTCATA
*
9419108 TAATCGGGAAGTTCAAGAAGAGTCATA
1 TAATCGGGAAGCTCAAGAAGAGTCATA
*
9419135 TAA-CGGGATGCTCA
1 TAATCGGGAAGCTCA
9419149 TAAGAGCTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
25 5 0.15
26 25 0.74
27 4 0.12
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (27 bp):
TAATCGGGAAGCTCAAGAAGAGTCATA
Found at i:9421369 original size:140 final size:140
Alignment explanation
Indices: 9421134--9421399 Score: 392
Period size: 140 Copynumber: 1.9 Consensus size: 140
9421124 CTGGGTCGAT
* * * *
9421134 AGTTTCCTAAGTGTTGGGATAGACTTGCTAATATATGCTTTGACCAACTCTTTGTATAAGGGTTA
1 AGTTTCCTAAGTGTTGGGATAGACTTGCCAACATACGCTTTGACCAACTCTTTGTATAAGGGTCA
* *
9421199 GGATATGCATGCCTAAGGCAACACTTAAATAAGAGTC-AGTTTTGTCCATCACTATACCGACACT
66 GGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGA-CTTTGTCCAACACTATACCGACACT
9421263 TTTGGACTTAC
130 TTTGGACTTAC
* * * *
9421274 AGTTTCCTAAGTGTTGGGATCA-ACTTGCCGACATACGCTTTGGCCAGCTCTTTGTATAATGGTC
1 AGTTTCCTAAGTGTTGGGAT-AGACTTGCCAACATACGCTTTGACCAACTCTTTGTATAAGGGTC
* *
9421338 GGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATGCCGAC
65 AGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATACCGAC
9421400 TTTTGCTATA
Statistics
Matches: 112, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
140 110 0.98
141 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (140 bp):
AGTTTCCTAAGTGTTGGGATAGACTTGCCAACATACGCTTTGACCAACTCTTTGTATAAGGGTCA
GGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATACCGACACTT
TTGGACTTAC
Found at i:9425146 original size:21 final size:21
Alignment explanation
Indices: 9425120--9425162 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9425110 TCTTATCCCG
*
9425120 AAATCAAACCCCCCAAATCAA
1 AAATCAAAACCCCCAAATCAA
* *
9425141 AAATCAAAAGCCCTAAATCAA
1 AAATCAAAACCCCCAAATCAA
9425162 A
1 A
9425163 CCCTTCATCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.56, C:0.30, G:0.02, T:0.12
Consensus pattern (21 bp):
AAATCAAAACCCCCAAATCAA
Found at i:9427805 original size:35 final size:35
Alignment explanation
Indices: 9427685--9427839 Score: 168
Period size: 35 Copynumber: 4.5 Consensus size: 35
9427675 AGACATGTCC
* *
9427685 ATCCCAACATTTTTAAGGTTGCCTT-GACGGGTCT
1 ATCCCAACTTTTTTAAGGTTGCCTTAGATGGGTCT
* ** ** *
9427719 ATCCCAACCTTTTTAAAATTTTCTTAGATAGGTCT
1 ATCCCAACTTTTTTAAGGTTGCCTTAGATGGGTCT
*
9427754 ATCCCAACTTTTTTAAGGTTGCCTTAGATGGGTGT
1 ATCCCAACTTTTTTAAGGTTGCCTTAGATGGGTCT
* * * * *
9427789 ATCCCAACTTTTTTAAGGTTGACTTAAACGAGCCT
1 ATCCCAACTTTTTTAAGGTTGCCTTAGATGGGTCT
*
9427824 ATCCCAACATTTTTAA
1 ATCCCAACTTTTTTAA
9427840 AGTCACCTTT
Statistics
Matches: 99, Mismatches: 21, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
34 20 0.20
35 79 0.80
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (35 bp):
ATCCCAACTTTTTTAAGGTTGCCTTAGATGGGTCT
Found at i:9427830 original size:70 final size:69
Alignment explanation
Indices: 9427685--9427839 Score: 188
Period size: 70 Copynumber: 2.2 Consensus size: 69
9427675 AGACATGTCC
**
9427685 ATCCCAACATTTTTAAGGTTGCCTTGACGGGTCTATCCCAACCTTTTTAAAATTTTCTTAGATAG
1 ATCCCAACATTTTTAAGGTTGCCTTGACGGGTCTATCCCAACCTTTTTAAAATTGACTTAGATAG
*
9427750 GTCT
66 GCCT
* * * * **
9427754 ATCCCAACTTTTTTAAGGTTGCCTTAGATGGGTGTATCCCAACTTTTTTAAGGTTGACTTA-A-A
1 ATCCCAACATTTTTAAGGTTGCCTT-GACGGGTCTATCCCAACCTTTTTAAAATTGACTTAGATA
9427817 CGAGCCT
65 -G-GCCT
9427824 ATCCCAACATTTTTAA
1 ATCCCAACATTTTTAA
9427840 AGTCACCTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
68 1 0.01
69 26 0.36
70 46 0.63
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (69 bp):
ATCCCAACATTTTTAAGGTTGCCTTGACGGGTCTATCCCAACCTTTTTAAAATTGACTTAGATAG
GCCT
Found at i:9429613 original size:3 final size:3
Alignment explanation
Indices: 9429605--9429681 Score: 154
Period size: 3 Copynumber: 25.7 Consensus size: 3
9429595 TTTTATGACC
9429605 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9429653 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
9429682 GTGTTTTACT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:9432746 original size:50 final size:50
Alignment explanation
Indices: 9432687--9432795 Score: 128
Period size: 50 Copynumber: 2.2 Consensus size: 50
9432677 CTCCACTTCT
* * * *
9432687 ACTTCAGGGAGAGAAGATCCACCATTGTAGTTTTAATCTGACCCACTGCA
1 ACTTCAGGGAGAGAAGATCCACCATGGTAGTTTCAATCCGACCCACTACA
* * * * *
9432737 ACTTTAGGGAGATAAGATTCGCTATGGTAGTTTCAATCCGACCCACTACA
1 ACTTCAGGGAGAGAAGATCCACCATGGTAGTTTCAATCCGACCCACTACA
*
9432787 ACTCCAGGG
1 ACTTCAGGG
9432796 GTATAGGATT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (50 bp):
ACTTCAGGGAGAGAAGATCCACCATGGTAGTTTCAATCCGACCCACTACA
Found at i:9432843 original size:94 final size:94
Alignment explanation
Indices: 9432729--9433556 Score: 841
Period size: 94 Copynumber: 8.9 Consensus size: 94
9432719 TTAATCTGAC
* * * * **
9432729 CCACTGCAACTTTAGGGAGATAAGATTCGCTATGGTAGTTTCAATCCGACCCACTACAACTCCAG
1 CCACTGCAACTTTAGGGAGATAAGATTCACTATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
9432794 GGGTATAGGATTTGTAGCTTCATCTTACT
66 GGGTATAGGATTTGTAGCTTCATCTTACT
* * ** * *** * * * * *
9432823 CTATTGCAACTTTAAAGAGATGAGATTTGTTGTTGTAGTTTTAATC-CATTCCACTGCAATTTTA
1 CCACTGCAACTTTAGGGAGATAAGATTCACTATTGTAGTTTCAATCTGA-CCCACTGCAACTTTA
* * *
9432887 GGGATATAAGATTTGTAGCTTCATCTTTCT
65 GGGGTATAGGATTTGTAGCTTCATCTTACT
* * * * * * *
9432917 CCACTGTAACTTCAGGGAGATAAGATCCACCATTGTAGTTTCAATTTGACCTACTGCAACTTCAG
1 CCACTGCAACTTTAGGGAGATAAGATTCACTATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
* *
9432982 GGGTATAGGATTTGTAGTTTCATCTTGCT
66 GGGTATAGGATTTGTAGCTTCATCTTACT
* * * * *
9433011 ----TGTAACTTCAGGGAGATAAGATTCACTATGGTAGCTTT-AATCTAACCCACTGCAACTCTA
1 CCACTGCAACTTTAGGGAGATAAGATTCACTATTGTAG-TTTCAATCTGACCCACTGCAACTTTA
9433071 GGGGTATAGGATTTGTAGCTTCATCTTACT
65 GGGGTATAGGATTTGTAGCTTCATCTTACT
* ** * * * ** * *
9433101 TCACTATAACTTCAAGGAGATAAGATCCACTATTGTAGTGCCAATCCGACCCACTGCAACTTCAG
1 CCACTGCAACTTTAGGGAGATAAGATTCACTATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
* *
9433166 GGGTATAGGGTTTGTAGTTTCATCTTACT
66 GGGTATAGGATTTGTAGCTTCATCTTACT
* * * * * *
9433195 CCGCTGCAACTTTAGGGAGCTAAGATTCGCTATGGTAGCTTCAATCTGACCTACTGCAACTTTAG
1 CCACTGCAACTTTAGGGAGATAAGATTCACTATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
* *
9433260 GGGTATAGGATTTCTAGCTTCATCTTGCT
66 GGGTATAGGATTTGTAGCTTCATCTTACT
* * * * * *
9433289 CCACTGCAACTTTAGGGAGATAAGATCCACCATTCTGGTTTCAATCTGAACCACTACAACTTTAG
1 CCACTGCAACTTTAGGGAGATAAGATTCACTATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
* *
9433354 GGGTATAGGATTTATTA-CTTCATCTTGCT
66 GGGTATAGGATTT-GTAGCTTCATCTTACT
* *
9433383 CCACTGCAACTTCAAGGGA-ATAAGATCTGC-C-ATTGTAGTTTCAATTTGACCCACTGCAACTT
1 CCACTGCAACTT-TAGGGAGATAAGAT-T-CACTATTGTAGTTTCAATCTGACCCACTGCAACTT
* * *
9433445 TAAGGGTAGAGGATTTGTAGCTTCATCTTGCT
63 TAGGGGTATAGGATTTGTAGCTTCATCTTACT
* * * *
9433477 CCACTACAACTTTAGGGAGATAAGA-TCTACCATTGTAGTTTCAATCTGACCCACTACAACTTCA
1 CCACTGCAACTTTAGGGAGATAAGATTC-ACTATTGTAGTTTCAATCTGACCCACTGCAACTTTA
* *
9433541 GGAGTATAGGGTTTGT
65 GGGGTATAGGATTTGT
9433557 GTTTGCATTG
Statistics
Matches: 600, Mismatches: 117, Indels: 34
0.80 0.16 0.05
Matches are distributed among these distances:
90 76 0.13
91 4 0.01
92 1 0.00
93 10 0.02
94 499 0.83
95 9 0.01
96 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (94 bp):
CCACTGCAACTTTAGGGAGATAAGATTCACTATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
GGGTATAGGATTTGTAGCTTCATCTTACT
Found at i:9433295 original size:44 final size:44
Alignment explanation
Indices: 9433151--9433493 Score: 173
Period size: 44 Copynumber: 7.4 Consensus size: 44
9433141 CCAATCCGAC
* * * *
9433151 CCACTGCAACTTCAGGGGTATAGGGTTTGTAGTTTCATCTTACT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCT
*
9433195 CCGCTGCAACTTTAGGGAGCTA-A-GATTCGCTATGGTAGCTTCAATC-TGAC-
1 CCACTGCAACTTTAGGG-G-TATAGGA-T---T-T-GTAGCTTC-ATCTTG-CT
* *
9433245 CTACTGCAACTTTAGGGGTATAGGATTTCTAGCTTCATCTTGCT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCT
* * * * **
9433289 CCACTGCAACTTTAGGGAG-ATAAGATCCACCATTCTGGTTTCAATC-TGAA
1 CCACTGCAACTTTAGGG-GTATAGGAT------TTGTAGCTTC-ATCTTGCT
* *
9433339 CCACTACAACTTTAGGGGTATAGGATTTATTA-CTTCATCTTGCT
1 CCACTGCAACTTTAGGGGTATAGGATTT-GTAGCTTCATCTTGCT
* * * * *
9433383 CCACTGCAACTTCAAGGGAATAAGATCTGCCATTGTAGTTTCAAT-TTGAC-
1 CCACTGCAACTTTAGGGGTATAGGA--T----TTGTAGCTTC-ATCTTG-CT
* *
9433433 CCACTGCAACTTTAAGGGTAGAGGATTTGTAGCTTCATCTTGCT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCT
*
9433477 CCACTACAACTTTAGGG
1 CCACTGCAACTTTAGGG
9433494 AGATAAGATC
Statistics
Matches: 228, Mismatches: 35, Indels: 72
0.68 0.10 0.21
Matches are distributed among these distances:
43 10 0.04
44 101 0.44
45 6 0.03
46 4 0.02
48 4 0.02
49 7 0.03
50 86 0.38
51 10 0.04
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCT
Found at i:9440431 original size:23 final size:23
Alignment explanation
Indices: 9440403--9440453 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
9440393 GGTGGCAGAG
**
9440403 GAGGCGTGCTTGCTGACATTTCA
1 GAGGCGTGCTTGCTGACATGACA
9440426 GAGGCGTGCTTGCTGACATGACA
1 GAGGCGTGCTTGCTGACATGACA
9440449 GAGGC
1 GAGGC
9440454 AGCGGCTAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.22, G:0.35, T:0.24
Consensus pattern (23 bp):
GAGGCGTGCTTGCTGACATGACA
Found at i:9444254 original size:15 final size:15
Alignment explanation
Indices: 9444221--9444254 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9444211 ATCTGTTTGA
*
9444221 TTTGTTTTGTTCTGC
1 TTTGTTTTGTTCTAC
*
9444236 TTTGTTTTGTTCTAT
1 TTTGTTTTGTTCTAC
9444251 TTTG
1 TTTG
9444255 CTATGTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.09, G:0.18, T:0.71
Consensus pattern (15 bp):
TTTGTTTTGTTCTAC
Found at i:9444536 original size:18 final size:17
Alignment explanation
Indices: 9444504--9444537 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9444494 AGCTGCCACT
9444504 CCTCCCACGCACACCAG
1 CCTCCCACGCACACCAG
*
9444521 CCTCCTCACGCGCACCA
1 CCTCC-CACGCACACCA
9444538 CCGCCGCCGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.59, G:0.12, T:0.09
Consensus pattern (17 bp):
CCTCCCACGCACACCAG
Found at i:9445102 original size:11 final size:11
Alignment explanation
Indices: 9445088--9445117 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
9445078 AATACTTTTT
9445088 TATTTTTAAAA
1 TATTTTTAAAA
9445099 TATTTTTAAAA
1 TATTTTTAAAA
9445110 TACTTTTT
1 TA-TTTTT
9445118 TTAATTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:9445118 original size:31 final size:29
Alignment explanation
Indices: 9445053--9445137 Score: 116
Period size: 30 Copynumber: 2.8 Consensus size: 29
9445043 TAAATATATA
*
9445053 TTTTTTATTTTTAAAAATATTTTACAATAC
1 TTTTTTATTTTTAAAAAT-TTTTAAAATAC
9445083 TTTTTTATTTTTAAAATATTTTTAAAATAC
1 TTTTTTATTTTTAAAA-ATTTTTAAAATAC
9445113 TTTTTTTAATTTTCTAAAAATTTTT
1 -TTTTTT-ATTTT-TAAAAATTTTT
9445138 TTTTGTGTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
30 26 0.52
31 8 0.16
32 11 0.22
33 5 0.10
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (29 bp):
TTTTTTATTTTTAAAAATTTTTAAAATAC
Found at i:9445125 original size:21 final size:21
Alignment explanation
Indices: 9445100--9445140 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
9445090 TTTTTAAAAT
9445100 ATTTT-TAAAATACTTTTTTTA
1 ATTTTCTAAAA-ACTTTTTTTA
*
9445121 ATTTTCTAAAAATTTTTTTT
1 ATTTTCTAAAAACTTTTTTT
9445141 TGTGTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTTCTAAAAACTTTTTTTA
Found at i:9445130 original size:22 final size:20
Alignment explanation
Indices: 9445100--9445139 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
9445090 TTTTTAAAAT
9445100 ATTTTTAAAATACTTTTTTTA
1 ATTTTTAAAA-ACTTTTTTTA
9445121 ATTTTCTAAAAA-TTTTTTT
1 ATTTT-TAAAAACTTTTTTT
9445140 TTGTGTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTTTAAAAACTTTTTTTA
Found at i:9446040 original size:47 final size:52
Alignment explanation
Indices: 9445941--9446042 Score: 124
Period size: 47 Copynumber: 2.1 Consensus size: 52
9445931 TTTATTTTCG
* * * *
9445941 AAATTTTTTTATTTATTTATTTTAAACCTATTTCTCATATATTATTTATTTT
1 AAATTGTTTTATTTATTTATTTTAAACCTATTTCTCACATATCATGTATTTT
*
9445993 AAATTGTTTTA-TTATTTATTTT-AA-GT-TTTC-CACATATCATGTATTTT
1 AAATTGTTTTATTTATTTATTTTAAACCTATTTCTCACATATCATGTATTTT
9446040 AAA
1 AAA
9446043 CTATTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
47 17 0.38
48 4 0.09
49 1 0.02
50 2 0.04
51 11 0.24
52 10 0.22
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (52 bp):
AAATTGTTTTATTTATTTATTTTAAACCTATTTCTCACATATCATGTATTTT
Found at i:9446161 original size:31 final size:27
Alignment explanation
Indices: 9446062--9446186 Score: 89
Period size: 27 Copynumber: 4.7 Consensus size: 27
9446052 ACTATTATCC
*
9446062 ATTTT-AAATTTTTATATAT-T-ATTT
1 ATTTTGAATTTTTTATATATATCATTT
* ** * * *
9446086 ATTTTTAAACTATCATATATATTATTT
1 ATTTTGAATTTTTTATATATATCATTT
9446113 ATTTTGAATTTTTTATATATATCATTT
1 ATTTTGAATTTTTTATATATATCATTT
* * *
9446140 ATTTTTTAACTGTTTTGTATAT-T-ATTT
1 A-TTTTGAA-TTTTTTATATATATCATTT
* *
9446167 ATTTTAAACTTTTTATATAT
1 ATTTTGAATTTTTTATATAT
9446187 TATTTTTAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
24 5 0.06
25 20 0.25
26 7 0.09
27 31 0.39
28 7 0.09
29 10 0.12
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (27 bp):
ATTTTGAATTTTTTATATATATCATTT
Found at i:9446191 original size:21 final size:22
Alignment explanation
Indices: 9446165--9446214 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
9446155 TGTATATTAT
*
9446165 TTATTTTAAACT-TTTTATATA
1 TTATTTTAAACTGTCTTATATA
9446186 TTATTTTTAAACTGTCTTATATA
1 TTA-TTTTAAACTGTCTTATATA
9446209 TTATTT
1 TTATTT
9446215 ATTTTAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 3 0.12
22 12 0.46
23 11 0.42
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (22 bp):
TTATTTTAAACTGTCTTATATA
Found at i:9446220 original size:26 final size:26
Alignment explanation
Indices: 9445953--9446316 Score: 186
Period size: 26 Copynumber: 14.2 Consensus size: 26
9445943 ATTTTTTTAT
* *
9445953 TTATTTATTTTAAACCTATTTCTCATATA
1 TTATTTATTTTAAA-C--TGTCTTATATA
*
9445982 TTATTTATTTTAAA-T-TGTT-T-TA
1 TTATTTATTTTAAACTGTCTTATATA
** * * *
9446004 TTATTTATTTTAAGTTTTC-CACATA
1 TTATTTATTTTAAACTGTCTTATATA
* * * *
9446029 TCATGTATTTTAAACTAT-TTCAAACTA
1 TTATTTATTTTAAACTGTCTT-ATA-TA
** *
9446056 TTATCCATTTTAAA-T-TTTTATATA
1 TTATTTATTTTAAACTGTCTTATATA
* *
9446080 TTATTTATTTTTAAACTATCATATATA
1 TTATTTA-TTTTAAACTGTCTTATATA
* * *
9446107 TTATTTATTTTGAA-TTTTTTATATA
1 TTATTTATTTTAAACTGTCTTATATA
* * *
9446132 TATCATTTATTTTTTAACTGTTTTGTATA
1 T-T-ATTTA-TTTTAAACTGTCTTATATA
*
9446161 TTATTTATTTTAAACT-TTTTATATA
1 TTATTTATTTTAAACTGTCTTATATA
9446186 TTA--T-TTTTAAACTGTCTTATATA
1 TTATTTATTTTAAACTGTCTTATATA
* *
9446209 TTATTTATTTTAAATTG-CTTTGTATA
1 TTATTTATTTTAAACTGTC-TTATATA
** * *
9446235 TTATTTATTTTAATTTGTTTTACATA
1 TTATTTATTTTAAACTGTCTTATATA
* *
9446261 TTATTTACTTTAAATTGT-TT-TATA
1 TTATTTATTTTAAACTGTCTTATATA
* * * *
9446285 CTATTTACTTCAAATTG-CTCTATATA
1 TTATTTATTTTAAACTGTCT-TATATA
9446311 TTATTT
1 TTATTT
9446317 TGTTTCGTTT
Statistics
Matches: 268, Mismatches: 43, Indels: 51
0.74 0.12 0.14
Matches are distributed among these distances:
22 24 0.09
23 14 0.05
24 29 0.11
25 51 0.19
26 82 0.31
27 37 0.14
28 7 0.03
29 24 0.09
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (26 bp):
TTATTTATTTTAAACTGTCTTATATA
Found at i:9446262 original size:52 final size:50
Alignment explanation
Indices: 9446062--9446291 Score: 218
Period size: 52 Copynumber: 4.5 Consensus size: 50
9446052 ACTATTATCC
* **
9446062 ATTTTAAATT-TTTATATATTATTTATTTTTAAACTATCATATATATTATTT
1 ATTTTAAATTCTTT-TATATTATTTATTTTT-AACTGTTTTATATATTATTT
* * *
9446113 ATTTTGAATTTTTTATATATATCATTTATTTTTTAACTGTTTTGTATATTATTT
1 ATTTTAAATTCTTT-TATAT-T-ATTTA-TTTTTAACTGTTTTATATATTATTT
* *
9446167 ATTTTAAACT-TTTTATA-TA-TTATTTTTAAACTGTCTTATATATTATTT
1 ATTTTAAATTCTTTTATATTATTTATTTTT-AACTGTTTTATATATTATTT
* *
9446215 ATTTTAAATTGCTTTGTATATTATTTA-TTTTAATTTGTTTTACATATTATTT
1 ATTTTAAATT-CTTT-TATATTATTTATTTTTAA-CTGTTTTATATATTATTT
* * *
9446267 ACTTTAAATTGTTTTATACTATTTA
1 ATTTTAAATTCTTTTATATTATTTA
9446292 CTTCAAATTG
Statistics
Matches: 152, Mismatches: 16, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
47 5 0.03
48 30 0.20
49 1 0.01
50 14 0.09
51 18 0.12
52 43 0.28
53 7 0.05
54 29 0.19
55 5 0.03
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (50 bp):
ATTTTAAATTCTTTTATATTATTTATTTTTAACTGTTTTATATATTATTT
Found at i:9446308 original size:24 final size:23
Alignment explanation
Indices: 9446262--9446312 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
9446252 TTTTACATAT
* * *
9446262 TATTTACTTTAAATTGTTTTATA
1 TATTTACTTCAAATTGCTCTATA
9446285 CTATTTACTTCAAATTGCTCTATA
1 -TATTTACTTCAAATTGCTCTATA
9446309 TATT
1 TATT
9446313 ATTTTGTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.55
Consensus pattern (23 bp):
TATTTACTTCAAATTGCTCTATA
Found at i:9446314 original size:102 final size:101
Alignment explanation
Indices: 9446085--9446316 Score: 251
Period size: 102 Copynumber: 2.3 Consensus size: 101
9446075 ATATATTATT
* * * *
9446085 TATTTTTAAACTATCATATATATTATTTATTTTGAATTTTTTATATATATCATTTATTTTTTAAC
1 TATTTTTAAACTGTCTTATATATTATTTATTTTAAATTCTTTATATATATCATTTA-TTTTTAAC
** * *
9446150 TGTTTTGTATATTATTTATTTTAAACTTTTTATATAT
65 TGTTTTACATATTATTTACTTTAAACTTTTTATATAC
*
9446187 TATTTTTAAACTGTCTTATATATTATTTATTTTAAATTGCTTTGTATAT-T-ATTTA-TTTTAAT
1 TATTTTTAAACTGTCTTATATATTATTTATTTTAAATT-CTTTATATATATCATTTATTTTTAA-
*
9446249 TTGTTTTACATATTATTTACTTTAAA-TTGTTT-TATAC
64 CTGTTTTACATATTATTTACTTTAAACTT-TTTATATAC
*
9446286 TATTTACTTCAAATTG-CTCTATATATTATTT
1 TATTT--TT-AAACTGTCT-TATATATTATTT
9446317 TGTTTCGTTT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
99 17 0.15
100 25 0.22
101 9 0.08
102 53 0.47
103 8 0.07
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.60
Consensus pattern (101 bp):
TATTTTTAAACTGTCTTATATATTATTTATTTTAAATTCTTTATATATATCATTTATTTTTAACT
GTTTTACATATTATTTACTTTAAACTTTTTATATAC
Found at i:9449093 original size:3 final size:3
Alignment explanation
Indices: 9449085--9449140 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
9449075 AGAAAGGCAC
9449085 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9449133 ATT ATT AT
1 ATT ATT AT
9449141 GGTCATAGAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:9453359 original size:24 final size:24
Alignment explanation
Indices: 9453281--9453411 Score: 140
Period size: 26 Copynumber: 5.3 Consensus size: 24
9453271 GCTCTTTCAT
*
9453281 TATTATTTATTTTAAGTTTTTTCATA
1 TATTATTTA-TTTAAATTTTTT-ATA
*
9453307 TATTATTTATTTGAAATTGTTTTACA
1 TATTATTTATTT-AAATT-TTTTATA
9453333 TATTATTTATTTAAATTTTTTATA
1 TATTATTTATTTAAATTTTTTATA
* * *
9453357 TATTTTTTATTTTAAACTATTATATA
1 TATTATTTA-TTTAAA-TTTTTTATA
*
9453383 TATTATCT-TTTAAA-TTTTTATA
1 TATTATTTATTTAAATTTTTTATA
9453405 TATTATT
1 TATTATT
9453412 CTTTTTTAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
22 12 0.13
24 20 0.22
25 14 0.16
26 40 0.44
27 4 0.04
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.63
Consensus pattern (24 bp):
TATTATTTATTTAAATTTTTTATA
Found at i:9453366 original size:50 final size:50
Alignment explanation
Indices: 9453281--9453411 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 50
9453271 GCTCTTTCAT
* * * *
9453281 TATTATTTATTTTAAGTTTTTTCATATATTATTTATTTGAAATTGTTTTACA
1 TATTATTTA-TTTAAATTTTTT-ATATATTATTTATTTGAAACTATTATACA
* * *
9453333 TATTATTTATTTAAATTTTTTATATATTTTTTATTTTAAACTATTATATA
1 TATTATTTATTTAAATTTTTTATATATTATTTATTTGAAACTATTATACA
*
9453383 TATTATCT-TTTAAA-TTTTTATATATTATT
1 TATTATTTATTTAAATTTTTTATATATTATT
9453412 CTTTTTTAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 14 0.20
49 6 0.09
50 30 0.43
51 11 0.16
52 9 0.13
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.63
Consensus pattern (50 bp):
TATTATTTATTTAAATTTTTTATATATTATTTATTTGAAACTATTATACA
Found at i:9453417 original size:24 final size:25
Alignment explanation
Indices: 9453281--9453421 Score: 146
Period size: 24 Copynumber: 5.6 Consensus size: 25
9453271 GCTCTTTCAT
*
9453281 TATTATTTATTTTAAGTTTTTTCATA
1 TATTATTTATTTTAAATTTTTT-ATA
* *
9453307 TATTATTTATTTGAAATTGTTTTACA
1 TATTATTTATTTTAAATT-TTTTATA
9453333 TATTATTTA-TTTAAATTTTTTATA
1 TATTATTTATTTTAAATTTTTTATA
* * *
9453357 TATTTTTTATTTTAAA-CTATTATA
1 TATTATTTATTTTAAATTTTTTATA
*
9453381 TA-TATTATCTTTTAAA-TTTTTATA
1 TATTATT-TATTTTAAATTTTTTATA
*
9453405 TATTATTCTTTTTTAAA
1 TATTATT-TATTTTAAA
9453422 AACTGTTTTA
Statistics
Matches: 97, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
23 3 0.03
24 38 0.39
25 25 0.26
26 27 0.28
27 4 0.04
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (25 bp):
TATTATTTATTTTAAATTTTTTATA
Found at i:9453467 original size:25 final size:24
Alignment explanation
Indices: 9453439--9453558 Score: 93
Period size: 25 Copynumber: 4.9 Consensus size: 24
9453429 TTATATGTTA
9453439 TTTTTATATTATTTATTTTAAATT
1 TTTTTATATTATTTATTTTAAATT
* * *
9453463 GTTTTATTATTATTCATTTTAAGTT
1 TTTTTA-TATTATTTATTTTAAATT
* *
9453488 TTTTATATATTTTTTATTTGAAA--
1 TTTT-TATATTATTTATTTTAAATT
* *
9453511 CTTTT-TATTATTTATTTTGAATT
1 TTTTTATATTATTTATTTTAAATT
* *
9453534 GTTCTTATGAATTATTTATCTTAAA
1 -TTTTTAT--ATTATTTATTTTAAA
9453559 CTATTATTTA
Statistics
Matches: 72, Mismatches: 16, Indels: 13
0.71 0.16 0.13
Matches are distributed among these distances:
21 13 0.18
22 1 0.01
23 3 0.04
24 8 0.11
25 32 0.44
26 2 0.03
27 13 0.18
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (24 bp):
TTTTTATATTATTTATTTTAAATT
Found at i:9453523 original size:24 final size:24
Alignment explanation
Indices: 9453439--9453527 Score: 99
Period size: 25 Copynumber: 3.6 Consensus size: 24
9453429 TTATATGTTA
9453439 TTTTTA-TATTATTTATTTTAAAT
1 TTTTTATTATTATTTATTTTAAAT
* *
9453462 TGTTTTATTATTATTCATTTTAAGT
1 T-TTTTATTATTATTTATTTTAAAT
* * *
9453487 TTTTTATATATTTTTTATTTGAAAC
1 TTTTTAT-TATTATTTATTTTAAAT
9453512 TTTTTATTATTTATTT
1 TTTTTATTA-TTATTT
9453528 TGAATTGTTC
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
23 1 0.02
24 13 0.24
25 40 0.74
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.69
Consensus pattern (24 bp):
TTTTTATTATTATTTATTTTAAAT
Found at i:9458654 original size:14 final size:14
Alignment explanation
Indices: 9458635--9458667 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
9458625 GGACCTTATG
9458635 TGGAAGGCCTAATC
1 TGGAAGGCCTAATC
9458649 TGGAAGGCCTAATC
1 TGGAAGGCCTAATC
9458663 TGGAA
1 TGGAA
9458668 AAACGTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.21
Consensus pattern (14 bp):
TGGAAGGCCTAATC
Found at i:9461433 original size:26 final size:26
Alignment explanation
Indices: 9461371--9461532 Score: 147
Period size: 26 Copynumber: 6.3 Consensus size: 26
9461361 GCTCTTTCAT
**
9461371 TATTATTTATTTTAAGTTTTTTTCATA
1 TATTATTTATTTTAAACTTTTTT-ATA
* *
9461398 TATTATTTATTTTAAACTGTTTTACA
1 TATTATTTATTTTAAACTTTTTTATA
*
9461424 TATTATTTA-TTTAAATTTTTTTATA
1 TATTATTTATTTTAAACTTTTTTATA
* *
9461449 TATTATTTATTTTAAACTATTATATA
1 TATTATTTATTTTAAACTTTTTTATA
*
9461475 TATTA--TCTTTTAAA---TTTTATA
1 TATTATTTATTTTAAACTTTTTTATA
* *
9461496 TATTATTCTTTTTTAAAAATTGTTTTATA
1 TATTATT-TATTTT-AAACTT-TTTTATA
*
9461525 TGTTATTT
1 TATTATTT
9461533 TTATATTATT
Statistics
Matches: 112, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
21 11 0.10
24 13 0.12
25 25 0.22
26 29 0.26
27 20 0.18
28 1 0.01
29 13 0.12
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (26 bp):
TATTATTTATTTTAAACTTTTTTATA
Found at i:9461457 original size:51 final size:51
Alignment explanation
Indices: 9461371--9461512 Score: 175
Period size: 51 Copynumber: 2.8 Consensus size: 51
9461361 GCTCTTTCAT
* * *
9461371 TATTATTTATTTTAAGTTTTTTTCATATATTATTTATTTTAAACTGTTTTACA
1 TATTATTTA-TTTAAATTTTTTT-ATATATTATTTATTTTAAACTATTATACA
*
9461424 TATTATTTATTTAAATTTTTTTATATATTATTTATTTTAAACTATTATATA
1 TATTATTTATTTAAATTTTTTTATATATTATTTATTTTAAACTATTATACA
* *
9461475 TATTATCT-TTTAAA---TTTTATATATTATTCTTTTTTAAA
1 TATTATTTATTTAAATTTTTTTATATATTATT-TATTTTAAA
9461513 AATTGTTTTA
Statistics
Matches: 82, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
47 14 0.17
48 8 0.10
50 6 0.07
51 33 0.40
52 12 0.15
53 9 0.11
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (51 bp):
TATTATTTATTTAAATTTTTTTATATATTATTTATTTTAAACTATTATACA
Found at i:9461509 original size:24 final size:24
Alignment explanation
Indices: 9461371--9461512 Score: 119
Period size: 24 Copynumber: 5.7 Consensus size: 24
9461361 GCTCTTTCAT
**
9461371 TATTATTTATTTTAAGTTTTTTTCATA
1 TATTATTTATTTTAA--ACTTTT-ATA
*
9461398 TATTATTTATTTTAAACTGTTTTACA
1 TATTATTTATTTTAAAC--TTTTATA
*
9461424 TATTATTTA-TTTAAATTTTTTTATA
1 TATTATTTATTTTAAA--CTTTTATA
*
9461449 TATTATTTATTTTAAACTATTATA
1 TATTATTTATTTTAAACTTTTATA
*
9461473 TA-TATTATCTTTTAAA-TTTTATA
1 TATTATT-TATTTTAAACTTTTATA
*
9461496 TATTATTCTTTTTTAAA
1 TATTATT-TATTTTAAA
9461513 AATTGTTTTA
Statistics
Matches: 97, Mismatches: 11, Indels: 17
0.78 0.09 0.14
Matches are distributed among these distances:
23 12 0.12
24 28 0.29
25 21 0.22
26 17 0.18
27 19 0.20
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (24 bp):
TATTATTTATTTTAAACTTTTATA
Found at i:9461556 original size:25 final size:25
Alignment explanation
Indices: 9461528--9461618 Score: 73
Period size: 25 Copynumber: 3.6 Consensus size: 25
9461518 TTTTATATGT
9461528 TATTTTTATATTATTTATTTTAAAC
1 TATTTTTATATTATTTATTTTAAAC
* *
9461553 TA-TTTTACTATTATTCATTTT-AAG
1 TATTTTTA-TATTATTTATTTTAAAC
* *
9461577 T-TTTTAATATATTGTTTATTTGAAAC
1 TATTTT--TATATTATTTATTTTAAAC
*
9461603 TTTTTATTAT-TTATTT
1 TATTT-TTATATTATTT
9461619 TGAATTGTTC
Statistics
Matches: 52, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
24 11 0.21
25 29 0.56
26 8 0.15
27 3 0.06
28 1 0.02
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (25 bp):
TATTTTTATATTATTTATTTTAAAC
Found at i:9461951 original size:23 final size:24
Alignment explanation
Indices: 9461906--9461957 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
9461896 TGATCCCCAT
9461906 ATTTTTTCATTTTAAGTAATTTAA
1 ATTTTTTCATTTTAAGTAATTTAA
* * **
9461930 TTTTTTTC-TTTTATGTTCTTTAA
1 ATTTTTTCATTTTAAGTAATTTAA
9461953 ATTTT
1 ATTTT
9461958 CCTCTTTTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.67
Consensus pattern (24 bp):
ATTTTTTCATTTTAAGTAATTTAA
Found at i:9462114 original size:14 final size:14
Alignment explanation
Indices: 9462079--9462105 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9462069 CATCATTTGT
9462079 CTATAACCAAAACC
1 CTATAACCAAAACC
9462093 CTATAACCAAAAC
1 CTATAACCAAAAC
9462106 TTATAAACCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (14 bp):
CTATAACCAAAACC
Found at i:9468958 original size:15 final size:15
Alignment explanation
Indices: 9468938--9468969 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
9468928 AGAATTGTTC
9468938 AATGGAAACAAACAG
1 AATGGAAACAAACAG
9468953 AATGGAAACAAACAG
1 AATGGAAACAAACAG
9468968 AA
1 AA
9468970 CAGATATGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.12, G:0.19, T:0.06
Consensus pattern (15 bp):
AATGGAAACAAACAG
Found at i:9475511 original size:5 final size:5
Alignment explanation
Indices: 9475501--9475526 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
9475491 TGAGCATTCG
9475501 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
9475527 AATTTTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:9476444 original size:5 final size:5
Alignment explanation
Indices: 9476434--9476473 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
9476424 TTGGGGGGTT
9476434 GGGAG GGGAG GGGAG GGGAG GGGAG GGGAG GGGAG GGGAG
1 GGGAG GGGAG GGGAG GGGAG GGGAG GGGAG GGGAG GGGAG
9476474 TAAAAGTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGAG
Found at i:9476587 original size:9 final size:9
Alignment explanation
Indices: 9476573--9476609 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
9476563 TATAGTTTGA
9476573 TATTCGAAT
1 TATTCGAAT
9476582 TATTCGAAT
1 TATTCGAAT
*
9476591 TATTCGAGT
1 TATTCGAAT
9476600 TATTCGAAT
1 TATTCGAAT
9476609 T
1 T
9476610 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:9476679 original size:9 final size:9
Alignment explanation
Indices: 9476662--9476692 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
9476652 TCGAGTTGAT
9476662 TCGAATAAC
1 TCGAATAAC
*
9476671 TCGATTAAC
1 TCGAATAAC
9476680 TCGAATAAC
1 TCGAATAAC
9476689 TCGA
1 TCGA
9476693 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:9481457 original size:43 final size:43
Alignment explanation
Indices: 9481403--9481696 Score: 466
Period size: 43 Copynumber: 6.8 Consensus size: 43
9481393 TTTTATAAAT
*
9481403 AAACGCTGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCAC
9481446 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCAC
9481489 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCAC
* *
9481532 AAACGCCGTTAAAGACCAAGATCTTTAGCGGCGCTAT-TCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCT-TCTCCCAC
* * * *
9481575 AAACGCCGCTGAAGACCAAGATCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCAC
9481618 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTAT-TCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCT-TCTCCCAC
* * *
9481661 AAATGCCGCTAAAGACCATGACTTTTAGCGGCGCTT
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTT
9481697 TTCTAAAAAC
Statistics
Matches: 236, Mismatches: 12, Indels: 7
0.93 0.05 0.03
Matches are distributed among these distances:
42 2 0.01
43 232 0.98
44 2 0.01
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCAC
Found at i:9482751 original size:15 final size:15
Alignment explanation
Indices: 9482731--9482761 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9482721 AAATTCATGA
9482731 GAACCGGAAGAAAAT
1 GAACCGGAAGAAAAT
9482746 GAACCGGAAGAAAAT
1 GAACCGGAAGAAAAT
9482761 G
1 G
9482762 CTTACCTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.13, G:0.29, T:0.06
Consensus pattern (15 bp):
GAACCGGAAGAAAAT
Found at i:9485678 original size:25 final size:24
Alignment explanation
Indices: 9485650--9485696 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
9485640 CGCTATTGCT
9485650 TATGC-AAAAAATTATTTCATTTTAC
1 TATGCTAAAAAATT-TTT-ATTTTAC
9485675 TATGCTAAAAAATTTTTATTTT
1 TATGCTAAAAAATTTTTATTTT
9485697 GTTTTTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 5 0.24
25 8 0.38
26 8 0.38
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (24 bp):
TATGCTAAAAAATTTTTATTTTAC
Found at i:9486402 original size:22 final size:22
Alignment explanation
Indices: 9486374--9486491 Score: 164
Period size: 22 Copynumber: 5.4 Consensus size: 22
9486364 TTTATTGTTC
*
9486374 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
9486396 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
**
9486418 AGCCATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
** * * *
9486440 AGCCATGAGGGTTTAGTTCGTT
1 AAACATGAGAGCTTAGTACGTT
9486462 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
9486484 AAACATGA
1 AAACATGA
9486492 AATACTAATT
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 85 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTT
Found at i:9486560 original size:21 final size:21
Alignment explanation
Indices: 9486536--9486578 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9486526 GACCCCGAAT
* *
9486536 CTCTAAACCCTAAATCACTAA
1 CTCTAAACCCCAAACCACTAA
*
9486557 CTCTTAACCCCAAACCACTAA
1 CTCTAAACCCCAAACCACTAA
9486578 C
1 C
9486579 CTTATTTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.21
Consensus pattern (21 bp):
CTCTAAACCCCAAACCACTAA
Found at i:9486714 original size:14 final size:14
Alignment explanation
Indices: 9486697--9486786 Score: 110
Period size: 14 Copynumber: 6.5 Consensus size: 14
9486687 ACTAATTAAT
*
9486697 CTAACCCTTAATCC
1 CTAACCCTTAACCC
9486711 CTAACCCTTAACCC
1 CTAACCCTTAACCC
* *
9486725 CTAACCCTAAATCC
1 CTAACCCTTAACCC
* *
9486739 CTAACTCTTAA-TC
1 CTAACCCTTAACCC
*
9486752 CTAGCCCTTAACCC
1 CTAACCCTTAACCC
*
9486766 CTAACCCCTAACCC
1 CTAACCCTTAACCC
9486780 CTAACCC
1 CTAACCC
9486787 ATAAACCTTA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
13 10 0.16
14 54 0.84
ACGTcount: A:0.29, C:0.47, G:0.01, T:0.23
Consensus pattern (14 bp):
CTAACCCTTAACCC
Found at i:9486724 original size:7 final size:7
Alignment explanation
Indices: 9486698--9486797 Score: 71
Period size: 7 Copynumber: 14.4 Consensus size: 7
9486688 CTAATTAATC
9486698 TAACCCT
1 TAACCCT
9486705 TAATCCC-
1 TAA-CCCT
9486712 TAACCCT
1 TAACCCT
*
9486719 TAACCCC
1 TAACCCT
9486726 TAACCCT
1 TAACCCT
*
9486733 AAATCCC-
1 TAA-CCCT
*
9486740 TAACTCT
1 TAACCCT
*
9486747 TAATCC-
1 TAACCCT
*
9486753 TAGCCCT
1 TAACCCT
*
9486760 TAACCCC
1 TAACCCT
*
9486767 TAACCCC
1 TAACCCT
*
9486774 TAACCCC
1 TAACCCT
*
9486781 TAACCCA
1 TAACCCT
*
9486788 TAAACCT
1 TAACCCT
9486795 TAA
1 TAA
9486798 ATCACAACCC
Statistics
Matches: 74, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
6 9 0.12
7 59 0.80
8 6 0.08
ACGTcount: A:0.32, C:0.43, G:0.01, T:0.24
Consensus pattern (7 bp):
TAACCCT
Found at i:9486726 original size:8 final size:7
Alignment explanation
Indices: 9486697--9486786 Score: 76
Period size: 7 Copynumber: 13.0 Consensus size: 7
9486687 ACTAATTAAT
9486697 CTAACCC
1 CTAACCC
* *
9486704 TTAATCC
1 CTAACCC
9486711 CTAACCC
1 CTAACCC
*
9486718 TTAACCC
1 CTAACCC
9486725 CTAA-CC
1 CTAACCC
*
9486731 CTAAATCC
1 CT-AACCC
*
9486739 CTAACTC
1 CTAACCC
* *
9486746 TTAA-TC
1 CTAACCC
*
9486752 CTAGCCC
1 CTAACCC
*
9486759 TTAACCC
1 CTAACCC
9486766 CTAACCC
1 CTAACCC
9486773 CTAACCC
1 CTAACCC
9486780 CTAACCC
1 CTAACCC
9486787 ATAAACCTTA
Statistics
Matches: 65, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
6 8 0.12
7 53 0.82
8 4 0.06
ACGTcount: A:0.29, C:0.47, G:0.01, T:0.23
Consensus pattern (7 bp):
CTAACCC
Found at i:9486834 original size:14 final size:15
Alignment explanation
Indices: 9486817--9486848 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
9486807 CTTAAATCAA
9486817 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
9486831 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
9486846 AAT
1 AAT
9486849 TTATAAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:9487328 original size:41 final size:41
Alignment explanation
Indices: 9487227--9487331 Score: 147
Period size: 41 Copynumber: 2.6 Consensus size: 41
9487217 AAATGTTTTT
* * *
9487227 GCGGCGCTTTTTAAAAAATGCCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGACCTGAGCATTA
* *
9487268 GTGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGACCTGAGCATTA
* *
9487309 GCGGCGCTTTCTCAGAAACGCCG
1 GCGGCGCTTTTTCAAAAACGCCG
9487332 GCGCTTTCTC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.24
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGACCTGAGCATTA
Found at i:9487335 original size:20 final size:20
Alignment explanation
Indices: 9487310--9487351 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
9487300 TGAGCATTAG
*
9487310 CGGCGCTTTCTCAGAAACGC
1 CGGCGCTTTCTCAAAAACGC
9487330 CGGCGCTTTCTCAAAAACGC
1 CGGCGCTTTCTCAAAAACGC
9487350 CG
1 CG
9487352 CTAAAAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.36, G:0.24, T:0.19
Consensus pattern (20 bp):
CGGCGCTTTCTCAAAAACGC
Found at i:9487365 original size:61 final size:61
Alignment explanation
Indices: 9487270--9487392 Score: 201
Period size: 61 Copynumber: 2.0 Consensus size: 61
9487260 GAGCATTAGT
* * *
9487270 GGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGCGCTTTCTCAGAAACGCC
1 GGCGCTTTCTCAAAAACGCCGCTAAAAATCTGAGCATTAGCGGCGCTTTCTCAAAAACGCC
* *
9487331 GGCGCTTTCTCAAAAACGCCGCTAAAAATCTGAGCTTTAGCGGCGCTTTCTCAAAAATGCC
1 GGCGCTTTCTCAAAAACGCCGCTAAAAATCTGAGCATTAGCGGCGCTTTCTCAAAAACGCC
9487392 G
1 G
9487393 CTAAAGATCT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (61 bp):
GGCGCTTTCTCAAAAACGCCGCTAAAAATCTGAGCATTAGCGGCGCTTTCTCAAAAACGCC
Found at i:9487404 original size:102 final size:103
Alignment explanation
Indices: 9487228--9487434 Score: 299
Period size: 102 Copynumber: 2.0 Consensus size: 103
9487218 AATGTTTTTG
* * ** * *
9487228 CGGCGCTTTTTAAAAAATGCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTTTCAAAAACGCCGCT
1 CGGCGCTTTCTAAAAAACGCCGCTAAAAACCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCT
* *
9487293 AAAGATCTGAGCATTAGCGGCGCTT-TCTCAGAAACGC
66 AAAGATCTGAGAATTAGCGGCGCTTCTCTCAAAAACGC
* * * *
9487330 CGGCGCTTTCTCAAAAACGCCGCTAAAAATCTGAGCTTTAGCGGCGCTTTCTCAAAAATGCCGCT
1 CGGCGCTTTCTAAAAAACGCCGCTAAAAACCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCT
9487395 AAAGATCTGAGAATTAGCGGCGCTTCTCTCAAAAACGC
66 AAAGATCTGAGAATTAGCGGCGCTTCTCTCAAAAACGC
9487433 CG
1 CG
9487435 CTAAAGATCT
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
102 79 0.86
103 13 0.14
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (103 bp):
CGGCGCTTTCTAAAAAACGCCGCTAAAAACCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCT
AAAGATCTGAGAATTAGCGGCGCTTCTCTCAAAAACGC
Found at i:9487438 original size:42 final size:41
Alignment explanation
Indices: 9487330--9487488 Score: 246
Period size: 42 Copynumber: 3.8 Consensus size: 41
9487320 TCAGAAACGC
* *
9487330 CGGCGCTTTCTCAAAAACGCCGCTAAAAATCTGAGCTTTAG
1 CGGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAG
* *
9487371 CGGCGCTTTCTCAAAAATGCCGCTAAAGATCTGAGAATTAG
1 CGGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAG
9487412 CGGCGCTTCTCTCAAAAACGCCGCTAAAGATCTGAGCATTAG
1 CGGCGCTT-TCTCAAAAACGCCGCTAAAGATCTGAGCATTAG
* *
9487454 CGGCGCTTTTTTTAAAAACGCCGCTAAAGATCTGA
1 CGGCGC-TTTCTCAAAAACGCCGCTAAAGATCTGA
9487489 AAGGTACAAA
Statistics
Matches: 108, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
41 45 0.42
42 61 0.56
43 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (41 bp):
CGGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAG
Found at i:9490827 original size:543 final size:543
Alignment explanation
Indices: 9489376--9491949 Score: 4202
Period size: 543 Copynumber: 4.7 Consensus size: 543
9489366 TAACAATGTC
* ** * * *
9489376 TTCCGTTTCATGAATTAATTAAG-CCCGATCATTCTTCTTTCACTAAATTTCATCCAACAAACAA
1 TTCCGTTTCTTGAATTAATTTCGACTCGATCATTCTTCTTTCACTCAATTCCATCCAACAAACAA
** **
9489440 GCGATCGACACCTACGACCATATAAGGCTTCATACAAAGCCATTTGAATACTCGATTGAAAACTA
66 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
* ** * *
9489505 TTATTGTATACAAATTCAGCCAACGGTAATTAACGCTCCCAACCTGATTCAAAATCAATAACACA
131 TTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
* * * ** *
9489570 AGTACAAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGACTGTCTGTCAATCTGCTGGTGAA
196 AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAA
* * *
9489635 AAGCTGTGCTAAAATTAAGTCACGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCAAAGTG
261 AAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGTG
* * *
9489700 AACCACGGATCTCGATCAGAAATTATTAACATAGGGACACCGTGTAATCTTACTATTTCTTAAAT
326 AACCGCGGATCTCGATCAGAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAAT
*
9489765 ATAAACTTCAGTAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTCG
391 ATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTCG
* * * **
9489830 TAAGTCGATCAACAATCACTCATACAGTATTTTTCTTACTTGCCGATAAAGGTAACCCTGTTACA
456 TAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTACCGATAAAGGTAACCCTACTACA
*
9489895 AAATCCATTATGATACAATCCCA
521 AAATCCATTGTGATACAATCCCA
* * *
9489918 TTCCGTTTGTTGACTTAATTTCGACTCGATCATTCTTCTTTCACTCAATTCCATCCAATAAACAA
1 TTCCGTTTCTTGAATTAATTTCGACTCGATCATTCTTCTTTCACTCAATTCCATCCAACAAACAA
*
9489983 GTTATCGACACCTACGACCATATAAGGCTTCATACGAAG-CATTTGAATACTCGATTGAAAACTA
66 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
* *
9490047 TTATTGTATACAAATTTGGCCACAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
131 TTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
* * *
9490112 AGTAAGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTGTCCATCAGTCTGCTAGTGAA
196 AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAA
* * * * *
9490177 AAGCTGTGCTAAAATTAAGTCGTGTACCAAGAGATTCGTGTAACTATTTCCAAAATATCGAAGTG
261 AAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGTG
* *
9490242 AATCGCGGATCTCGATCAGAAATTATTGACATACGGACACCGTGCAATCTTACTATTTCTTAAAT
326 AACCGCGGATCTCGATCAGAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAAT
* * * * *
9490307 ATAAACTTCAGCAAGCTTTTTAAGTGACCAATTTTTCCTAGCTGCAATGAAATGAGCTGATTTCG
391 ATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTCG
* * ** *
9490372 TAAGTCGATCAACAATCACCCATACAGTATTTTTCTTACTTGCCGGCAAAGGTAACCCTATTACA
456 TAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTACCGATAAAGGTAACCCTACTACA
* *
9490437 AAATCCTTTGTGATCCAATCCCA
521 AAATCCATTGTGATACAATCCCA
* * * * * *
9490460 TTCTGTTTCTTGATTTAATTTCGACCCAATCATTCTTCTTTCACTTAATTTCATCCAACAAACAA
1 TTCCGTTTCTTGAATTAATTTCGACTCGATCATTCTTCTTTCACTCAATTCCATCCAACAAACAA
9490525 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
66 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
9490590 TTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
131 TTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
*
9490655 AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTACTGGTGAA
196 AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAA
*
9490720 AAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTG
261 AAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGTG
*
9490785 AACCACGGATCTCGATCAGAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAAT
326 AACCGCGGATCTCGATCAGAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAAT
* *
9490850 ATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTG
391 ATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTCG
* *
9490915 TAAGTCGATTAACAATCACCCATACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACA
456 TAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTACCGATAAAGGTAACCCTACTACA
*
9490980 AAATCCATTGTGATACAATTCCA
521 AAATCCATTGTGATACAATCCCA
* * *
9491003 TTCCGTTTCTTGAATTAGTTTCGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAA
1 TTCCGTTTCTTGAATTAATTTCGACTCGATCATTCTTCTTTCACTCAATTCCATCCAACAAACAA
* *
9491068 CTTATCGACACCTACGACCATATAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTA
66 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
9491133 TTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
131 TTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
*
9491198 AGTACGAAGCATGACTTCCAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAA
196 AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAA
9491263 AAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGTG
261 AAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGTG
* * *
9491328 AACTGCGGATCTCGATAAAAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAAT
326 AACCGCGGATCTCGATCAGAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAAT
* *
9491393 ATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTG
391 ATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTCG
9491458 TAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTACCGATAAAGGTAACCCTACTACA
456 TAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTACCGATAAAGGTAACCCTACTACA
*
9491523 AAATCCATTGTGATACAATTCCA
521 AAATCCATTGTGATACAATCCCA
* *
9491546 TTTCGTTTCTTGAATTAATTTC-AGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACA
1 TTCCGTTTCTTGAATTAATTTCGA-CTCGATCATTCTTCTTTCACTCAATTCCATCCAACAAACA
*
9491610 AGTTATCGACACCTACGACCATATAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACT
65 AGTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACT
* *
9491675 ATTGTTGTATACAAATTTGGCCATAGGTAAGTAACGCT-CCAACCTGATTCAAAATTAATAACAC
130 ATTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACAC
*
9491739 AAGTACGAAGCATGTCTTCCAAAATCTGACTAACATGCTCAGATTATCCATCAGTCTGCTGGTGA
195 AAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGA
* * *
9491804 AAAGTTGTGCTAAAATTAAGTCGCGTACTAAGAGATTTGTGCAACTGTTTCTAAAATCTCGAAGT
260 AAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGT
* * * *
9491869 GAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACACTGCGCAATCTTACTATTTCTTAAA
325 GAACCGCGGATCTCGATCAGAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAA
9491934 TATAAACTTCAGCAAG
390 TATAAACTTCAGCAAG
9491950 NNNNNNNNNN
Statistics
Matches: 1906, Mismatches: 123, Indels: 6
0.94 0.06 0.00
Matches are distributed among these distances:
542 743 0.39
543 1163 0.61
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.30
Consensus pattern (543 bp):
TTCCGTTTCTTGAATTAATTTCGACTCGATCATTCTTCTTTCACTCAATTCCATCCAACAAACAA
GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
TTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAA
AAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGTG
AACCGCGGATCTCGATCAGAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAAT
ATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTCG
TAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTACCGATAAAGGTAACCCTACTACA
AAATCCATTGTGATACAATCCCA
Found at i:9496398 original size:542 final size:541
Alignment explanation
Indices: 9495199--9496447 Score: 2297
Period size: 541 Copynumber: 2.3 Consensus size: 541
9495189 NNNNNNNNNN
*
9495199 CAGCAAGCTTTTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAACTCGA
1 CAGCAAGCTTTTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGA
*
9495264 TCAACAATCACCCATACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCAT
66 TCAACAATCACCCATACAGCATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCAT
* *
9495329 TGTGATAGAATTCCATTTCGTTTCTTGAATTAATTTCGGCTCGATCAGTCTTCTTTCACTCAATT
131 TGTGATACAATTCCATTCCGTTTCTTGAATTAATTTCGGCTCGATCAGTCTTCTTTCACTCAATT
* *
9495394 CCATCAAACGAACAAGTTATCAACACCTACGACCATATAAGGCTTCATACGGGGCCATTTGAATA
196 CCATCAAACAAACAAGTTATCAACACCTACAACCATATAAGGCTTCATACGGGGCCATTTGAATA
9495459 CTCGATTGAAAACTATTGTTGCATACAAATTTGGCCAAAGGTAAGTAACGCTCCAACCTGATTCA
261 CTCGATTGAAAACTATTGTTGCATACAAATTTGGCCAAAGGTAAGTAACGCTCCAACCTGATTCA
9495524 AAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTATCCATC
326 AAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTATCCATC
*
9495589 AGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCT
391 AGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCA
9495654 AAAATCTCGAAGTGAACCGCGGATCTCGATAAAAATTATTGACATAGGGACACCGTGCAATCTTA
456 AAAATCTCGAAGTGAACCGCGGATCTCGATAAAAATTATTGACATAGGGACACCGTGCAATCTTA
9495719 CTATTTCTTAAATATAAACTT
521 CTATTTCTTAAATATAAACTT
*
9495740 CAGCAAGCTTTTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCTGATTTTGTAAGTCGA
1 CAGCAAGCTTTTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGA
* * *
9495805 TTAACAATCACCCATACAGCATTTTTCTTACTTACCGATAAAGGTAACCCTACGACAAAATCAAT
66 TCAACAATCACCCATACAGCATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCAT
*
9495870 TGTGATACAATTCCATTCCGTTTCTTGAATTAATTTCGGCTCGATCATTCTTCTTTCACTCAATT
131 TGTGATACAATTCCATTCCGTTTCTTGAATTAATTTCGGCTCGATCAGTCTTCTTTCACTCAATT
9495935 CCATCAAACAAACAAGTTATCGAA-ACCTACAACCATATAAGGCTTCATACGGGGCCATTTGAAT
196 CCATCAAACAAACAAGTTATC-AACACCTACAACCATATAAGGCTTCATACGGGGCCATTTGAAT
*
9495999 ACTCGATTGAAAACTATTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCCCAACCTGATT
260 ACTCGATTGAAAACTATTGTTGCATACAAATTTGGCCAAAGGTAAGTAACGCT-CCAACCTGATT
*
9496064 CAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGTATAACATGCTCAGATTATCCA
324 CAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTATCCA
*
9496129 TCAGTCTGCTGGTGAAAATTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTT
389 TCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTT
9496194 CAAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACACCGTGCAATC
454 CAAAAATCTCGAAGTGAACCGCGGATCTCGAT-AAAAATTATTGACATAGGGACACCGTGCAATC
9496259 TTACTATTTCCTT-AATATAAACTT
518 TTACTATTT-CTTAAATATAAACTT
9496283 CAGCAAGCTTTTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGA
1 CAGCAAGCTTTTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGA
*
9496348 TCAACAATCACCCATACAGCATTTTTCTTACTTACCGAT-AAGCTAACCCTACTACAAAATCCAT
66 TCAACAATCACCCATACAGCATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCAT
9496412 TGTGATACAATTCCATTCCGTTTCTTGAATTAATTT
131 TGTGATACAATTCCATTCCGTTTCTTGAATTAATTT
9496448 NNNNNNNNNN
Statistics
Matches: 684, Mismatches: 20, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
541 297 0.43
542 230 0.34
543 154 0.23
544 3 0.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (541 bp):
CAGCAAGCTTTTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGA
TCAACAATCACCCATACAGCATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCAT
TGTGATACAATTCCATTCCGTTTCTTGAATTAATTTCGGCTCGATCAGTCTTCTTTCACTCAATT
CCATCAAACAAACAAGTTATCAACACCTACAACCATATAAGGCTTCATACGGGGCCATTTGAATA
CTCGATTGAAAACTATTGTTGCATACAAATTTGGCCAAAGGTAAGTAACGCTCCAACCTGATTCA
AAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTATCCATC
AGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCA
AAAATCTCGAAGTGAACCGCGGATCTCGATAAAAATTATTGACATAGGGACACCGTGCAATCTTA
CTATTTCTTAAATATAAACTT
Found at i:9499577 original size:543 final size:543
Alignment explanation
Indices: 9498550--9500330 Score: 3346
Period size: 543 Copynumber: 3.3 Consensus size: 543
9498540 NNNNNNNNNN
*
9498550 ACCGATAAAGGTAACCCTACTACAAAATCCACTGTGATACAATTCCATTCCGTTTCTTGAATTAA
1 ACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATTAA
* * *
9498615 TTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACGAACAAGTTATCGACACCTACGAC
66 TTTCGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACAAC
*
9498680 CATATAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTC
131 CATATAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTG
*
9498745 GCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAGTCAATAACACAAGTACGAAGCATGTCTTC
196 GCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTC
9498810 CAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAA
261 CAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAA
**
9498875 GTCGCGTAAGAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCAGATCTCGATAA
326 GTCGCGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCAGATCTCGATAA
*
9498940 AAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCTGCAAGCTT
391 AAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTT
9499005 TTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATTAACAATCA
456 TTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATTAACAATCA
9499070 CCCATACAGCATTTTTCTTACTT
521 CCCATACAGCATTTTTCTTACTT
9499093 ACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATTAA
1 ACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATTAA
9499158 TTTCGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACAAC
66 TTTCGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACAAC
*
9499223 CATATAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTATTGTATACAAATTTG
131 CATATAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTG
9499288 GCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTC
196 GCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTC
9499353 CAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAA
261 CAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAA
*
9499418 GTCGCGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAA
326 GTCGCGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCAGATCTCGATAA
*
9499483 AAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAACCTT
391 AAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTT
* *
9499548 TTGAAGTGGCCAATTTGTCCTGGCTACAATGAAACGAGCCGATTTTGTAAGTCGATCAACAATCA
456 TTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATTAACAATCA
9499613 CCCATACAGCATTTTTCTTACTT
521 CCCATACAGCATTTTTCTTACTT
9499636 ACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATTAA
1 ACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATTAA
*
9499701 TTTCGGCTCGATCATTCTTCTTTCACTCAATTCCATTAAACAAACAAGTTATCGACACCTACAAC
66 TTTCGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACAAC
9499766 CATATAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTG
131 CATATAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTG
9499831 GCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTC
196 GCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTC
* *
9499896 CAAAATCTGAATAACATGCTTAGATTATCCATCAGTCTGCTGGTGAGAAGTTGTGCTAAAATTAA
261 CAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAA
*
9499961 GTTGCGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCAGATCTCGATAA
326 GTCGCGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCAGATCTCGATAA
9500026 AAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTT
391 AAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTT
*
9500091 TTGAAGTGGCCAATTTATCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATTAACAATCA
456 TTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATTAACAATCA
9500156 CCCATACAGCATTTTTCTTACTT
521 CCCATACAGCATTTTTCTTACTT
* *
9500179 ACCGATAAAGGTAACCCTACTACAAAATCCATTATGATACAATTCCATTTCGTTTCTTGAATTAA
1 ACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATTAA
* *
9500244 TTTCGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACGAACAAGTTATCGACACCTACGAC
66 TTTCGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACAAC
*
9500309 TATATAAGGCTTCATACGGGGC
131 CATATAAGGCTTCATACGGGGC
9500331 NNNNNNNNNN
Statistics
Matches: 1208, Mismatches: 30, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
543 1208 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (543 bp):
ACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATTAA
TTTCGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACAAC
CATATAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTG
GCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTC
CAAAATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAA
GTCGCGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCAGATCTCGATAA
AAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTT
TTGAAGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATTAACAATCA
CCCATACAGCATTTTTCTTACTT
Found at i:9501899 original size:543 final size:543
Alignment explanation
Indices: 9500872--9506197 Score: 5469
Period size: 543 Copynumber: 9.8 Consensus size: 543
9500862 NNNNNNNNNN
*
9500872 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCC
1 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
*
9500937 CAACCTGATTCAAAATCAATAACAAAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
66 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
9501002 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
131 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
*
9501067 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCAGATCTCGATAAAAAATTATTGACATAGGGACA
196 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
* *
9501132 CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGACGTGGCCAATTTATCCT
261 CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
* *
9501197 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATTAACAATCACCCATACAGCATTTTTCTTAC
326 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
9501262 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATT
391 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATT
9501327 AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
456 AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
9501392 ACCATATAAGGCTTCATACGGGG
521 ACCATATAAGGCTTCATACGGGG
*
9501415 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCC
1 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
9501480 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
66 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
* *
9501545 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTCCTAAAACTAAGTCGCGTACCAAGAGATTCGT
131 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
9501610 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
196 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
* *
9501675 CTGCGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
261 CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
*
9501740 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAGCATTTTTCTTAC
326 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
* * * *
9501805 TTACCGATAAAGGTAACCGTACTACGAAATTCATTATGATACAATTCCATTCCGTTTCTTGAATT
391 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATT
* *
9501870 AATTTTGGCTCCATCATTCTTCTTTCACTCAATTCCATCAAACGAACAAGTTATCGACACCTACG
456 AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
9501935 ACCATATAAGGCTTCATACGGGG
521 ACCATATAAGGCTTCATACGGGG
9501958 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
1 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
*
9502023 CAACCTGATTTAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
66 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
9502088 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
131 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
**
9502153 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCATATCTCGATAAAAAATTATTGACATAGGGACA
196 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
* *
9502218 CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTTGCCAATTTATCCT
261 CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
*
9502283 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAGCATTTTTCTTAC
326 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
9502348 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATT
391 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATT
*
9502413 AATTTTGGCCCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
456 AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
9502478 ACCATATAAGGCTTCATACGGGG
521 ACCATATAAGGCTTCATACGGGG
*
9502501 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCC
1 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
*
9502566 CAACCTGATTCAAAATCAATAGCACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
66 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
* *
9502631 AGATTATCCATCAGTCTGCTGGTGAAGAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
131 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
*
9502696 GCAATTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
196 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
* ********************
9502761 CCGTGCAATCTTACTATTCCTTAAATATAAACTTCAGCAAGCTTTNNNNNNNNNNNNNNNNNNNN
261 CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
*****************************************************************
9502826 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
326 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
*****************************************************************
9502891 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
391 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATT
*****************************************************************
9502956 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
456 AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
******
9503021 NNNNNNTAAGGCTTCATACGGGG
521 ACCATATAAGGCTTCATACGGGG
9503044 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCT-C
1 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
9503108 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
66 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
9503173 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
131 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
9503238 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGAT-AAAAATTATTGACATAGGGACA
196 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
*
9503302 CCGTGCAATCTTACTATTTCCTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
261 CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
9503367 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
326 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
*
9503432 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCATTTCTTGAATT
391 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATT
9503497 AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
456 AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
9503562 ACCATATAAGGCTTCATACGGGG
521 ACCATATAAGGCTTCATACGGGG
*
9503585 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCC
1 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
9503650 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
66 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
*
9503715 AGATTATCCATCAGTCTGCTGGTGAAAAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
131 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
9503780 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
196 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
*
9503845 CCGTGCAATCTTACTATTTCTTAAATATAGACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
261 CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
*
9503910 GGCTAAAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
326 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
*
9503975 TTACCGATAAAGGTAACCCTACTACAAAATCCACTGTGATACAATTCCATTCCGTTTCTTGAATT
391 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATT
9504040 AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
456 AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
9504105 ACCATATAAGGCTTCATACGGGG
521 ACCATATAAGGCTTCATACGGGG
******************************************
9504128 CCATTTGAATACTCGATTGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
*****************************************************************
9504193 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
*****************************************************************
9504258 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
131 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
*****************************************************************
9504323 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
196 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
********************************** *
9504388 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCAAGCTTTTGAAGTGGCCAATTTATCCT
261 CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
* ** *** * *
9504453 GGCTACAATGAAATGAGCCGATTTTTTTGGAAAAGCAAAAATCACCCATACAACATTTTTCTTAC
326 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
*
9504518 TTACCGATAAAGGTAACCCTACTACAAAATCCATTATGATACAATTCCATTCCGTTTCTTGAATT
391 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATT
*
9504583 AATTTCGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
456 AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
9504648 ACCATATAAGGCTTCATACGGGG
521 ACCATATAAGGCTTCATACGGGG
*
9504671 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCACCAAAGGTAAGTAACGCT-C
1 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
* *
9504735 CAACCTGATTCAAAATTAATAACATAAGGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCT
66 CAACCTGATTCAAAATCAATAACACAA-GTACGAAGCATGTCTTCCAAAATCTGAATAACATGCT
*
9504800 CAGATTATCCATCAGTCTGCTGGTGAAAAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCG
130 CAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCG
9504865 TGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGAC
195 TGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGAC
9504930 ACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCC
260 ACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCC
*
9504995 TGGCTAAAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTA
325 TGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTA
*
9505060 CTTACCGATAAAGGTAACCCTACTACAAAATCCACTGTGATACAATTCCATTCCGTTTCTTGAAT
390 CTTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAAT
9505125 TAATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTAC
455 TAATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTAC
*
9505190 GACCATATAAGGCTTCATACCGGG
520 GACCATATAAGGCTTCATACGGGG
9505214 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCT-C
1 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
9505278 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
66 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
9505343 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
131 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
9505408 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
196 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
* *
9505473 CCGTGCAATCTTACTATTTCCTAAATATAAACTTCAGCCAGCTTTTGAAGTGGCCAATTTGTCCT
261 CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
*
9505538 GGCTAGAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
326 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
* *
9505603 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATAGAATTCCATTTCGTTTCTTGAATT
391 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATT
* * *
9505668 AATTTCGGCTCGATCAGTCTTCTTTCACTCAATTCCATCAAACGAACAAGTTATCGACACCTACG
456 AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
*
9505733 ACCATATAAGGCTTCATACCGGG
521 ACCATATAAGGCTTCATACGGGG
9505756 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCT-C
1 CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
9505820 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
66 CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
9505885 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
131 AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
* *
9505950 GCAACTGTTTCTAAAGTCTCGAAGTGAACCGCGGATCTCGATCAAAAATTATTGACATAGGGACA
196 GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
* * * *
9506015 CCGTGCAATCTTACTATTTCTTAAAAATAAACTTCAGCAATCTTTTGAAGTGACCAATTTGTCTT
261 CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
* * *
9506080 GGCTACAATGAAATGAGCCGATTTCGTAAGTCGATCAACAATCACTCATACAGCATTTTTCTTAC
326 GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
* ** *
9506145 TTACCGATAAGGGTAACCCTGTTACAAAATCCATTGTGATACAATCCCATTCC
391 TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCC
9506198 CATTCAGAAA
Statistics
Matches: 3684, Mismatches: 1096, Indels: 7
0.77 0.23 0.00
Matches are distributed among these distances:
541 144 0.04
542 1206 0.33
543 2334 0.63
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.27
Consensus pattern (543 bp):
CCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCAAAGGTAAGTAACGCTCC
CAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTC
AGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGT
GCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAATTATTGACATAGGGACA
CCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAAGTGGCCAATTTGTCCT
GGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCATACAACATTTTTCTTAC
TTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCATTCCGTTTCTTGAATT
AATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAAGTTATCGACACCTACG
ACCATATAAGGCTTCATACGGGG
Found at i:9503655 original size:542 final size:542
Alignment explanation
Indices: 9503027--9506197 Score: 3455
Period size: 542 Copynumber: 5.8 Consensus size: 542
9503017 NNNNNNNNNN
9503027 TAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCA
1 TAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCA
9503092 AAGGTAAGTAACGCTCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAA
66 AAGGTAAGTAACGCTCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAA
9503157 TCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGC
131 TCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGC
9503222 GTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGAT-AAAAAT
196 GTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAAT
*
9503286 TATTGACATAGGGACACCGTGCAATCTTACTATTTCCTAAATATAAACTTCAGCAAGCTTTTGAA
261 TATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAA
9503351 GTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCAT
326 GTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCAT
9503416 ACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCA
391 ACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCA
*
9503481 TTCCATTTCTTGAATTAATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAA
456 TTCCGTTTCTTGAATTAATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAA
9503546 GTTATCGACACCTACGACCATA
521 GTTATCGACACCTACGACCATA
*
9503568 TAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTGGCCA
1 TAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCA
9503633 AAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAA
66 AAGGTAAGTAACGCT-CCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAA
*
9503698 ATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGCTGTGCTAAAATTAAGTCG
130 ATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCG
9503763 CGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAA
195 CGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAA
*
9503828 TTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAGACTTCAGCAAGCTTTTGA
260 TTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGA
*
9503893 AGTGGCCAATTTGTCCTGGCTAAAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCA
325 AGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCA
*
9503958 TACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCACTGTGATACAATTCC
390 TACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCC
9504023 ATTCCGTTTCTTGAATTAATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACA
455 ATTCCGTTTCTTGAATTAATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACA
9504088 AGTTATCGACACCTACGACCATA
520 AGTTATCGACACCTACGACCATA
************************
9504111 TAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAANNNNNNNNNNNNNNNNNNNNNNNNN
1 TAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAA-CTATTGTTGTATACAAATTTCGCC
*****************************************************************
9504176 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
65 AAAGGTAAGTAACGCTCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAA
*****************************************************************
9504241 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
130 ATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCG
*****************************************************************
9504306 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
195 CGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAA
***************************************************
9504371 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCAAGCTTTTGA
260 TTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGA
* * ** *** * *
9504436 AGTGGCCAATTTATCCTGGCTACAATGAAATGAGCCGATTTTTTTGGAAAAGCAAAAATCACCCA
325 AGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCA
*
9504501 TACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCATTATGATACAATTCC
390 TACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCC
*
9504566 ATTCCGTTTCTTGAATTAATTTCGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACA
455 ATTCCGTTTCTTGAATTAATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACA
9504631 AGTTATCGACACCTACGACCATA
520 AGTTATCGACACCTACGACCATA
*
9504654 TAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCACCA
1 TAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCA
* *
9504719 AAGGTAAGTAACGCTCCAACCTGATTCAAAATTAATAACATAAGGTACGAAGCATGTCTTCCAAA
66 AAGGTAAGTAACGCTCCAACCTGATTCAAAATCAATAACACAA-GTACGAAGCATGTCTTCCAAA
*
9504784 ATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGCTGTGCTAAAATTAAGTCG
130 ATCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCG
9504849 CGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAA
195 CGTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAA
9504914 TTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGA
260 TTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGA
*
9504979 AGTGGCCAATTTGTCCTGGCTAAAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCA
325 AGTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCA
*
9505044 TACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCACTGTGATACAATTCC
390 TACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCC
9505109 ATTCCGTTTCTTGAATTAATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACA
455 ATTCCGTTTCTTGAATTAATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACA
9505174 AGTTATCGACACCTACGACCATA
520 AGTTATCGACACCTACGACCATA
*
9505197 TAAGGCTTCATACCGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCA
1 TAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCA
9505262 AAGGTAAGTAACGCTCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAA
66 AAGGTAAGTAACGCTCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAA
9505327 TCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGC
131 TCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGC
9505392 GTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAAT
196 GTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAAT
* *
9505457 TATTGACATAGGGACACCGTGCAATCTTACTATTTCCTAAATATAAACTTCAGCCAGCTTTTGAA
261 TATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAA
*
9505522 GTGGCCAATTTGTCCTGGCTAGAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCAT
326 GTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCAT
*
9505587 ACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATAGAATTCCA
391 ACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCA
* * * *
9505652 TTTCGTTTCTTGAATTAATTTCGGCTCGATCAGTCTTCTTTCACTCAATTCCATCAAACGAACAA
456 TTCCGTTTCTTGAATTAATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAA
9505717 GTTATCGACACCTACGACCATA
521 GTTATCGACACCTACGACCATA
*
9505739 TAAGGCTTCATACCGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCA
1 TAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCA
9505804 AAGGTAAGTAACGCTCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAA
66 AAGGTAAGTAACGCTCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAA
9505869 TCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGC
131 TCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGC
* *
9505934 GTACCAAGAGATTCGTGCAACTGTTTCTAAAGTCTCGAAGTGAACCGCGGATCTCGATCAAAAAT
196 GTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAAT
* *
9505999 TATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAAAATAAACTTCAGCAATCTTTTGAA
261 TATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAA
* * * *
9506064 GTGACCAATTTGTCTTGGCTACAATGAAATGAGCCGATTTCGTAAGTCGATCAACAATCACTCAT
326 GTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCAT
* * ** *
9506129 ACAGCATTTTTCTTACTTACCGATAAGGGTAACCCTGTTACAAAATCCATTGTGATACAATCCCA
391 ACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCA
9506194 TTCC
456 TTCC
9506198 CATTCAGAAA
Statistics
Matches: 2021, Mismatches: 605, Indels: 7
0.77 0.23 0.00
Matches are distributed among these distances:
541 79 0.04
542 1037 0.51
543 905 0.45
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.27
Consensus pattern (542 bp):
TAAGGCTTCATACGGGGCCATTTGAATACTCGATTGAAAACTATTGTTGTATACAAATTTCGCCA
AAGGTAAGTAACGCTCCAACCTGATTCAAAATCAATAACACAAGTACGAAGCATGTCTTCCAAAA
TCTGAATAACATGCTCAGATTATCCATCAGTCTGCTGGTGAAAAGTTGTGCTAAAATTAAGTCGC
GTACCAAGAGATTCGTGCAACTGTTTCTAAAATCTCGAAGTGAACCGCGGATCTCGATAAAAAAT
TATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAATATAAACTTCAGCAAGCTTTTGAA
GTGGCCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTTGTAAGTCGATCAACAATCACCCAT
ACAACATTTTTCTTACTTACCGATAAAGGTAACCCTACTACAAAATCCATTGTGATACAATTCCA
TTCCGTTTCTTGAATTAATTTTGGCTCGATCATTCTTCTTTCACTCAATTCCATCAAACAAACAA
GTTATCGACACCTACGACCATA
Found at i:9511140 original size:98 final size:98
Alignment explanation
Indices: 9510961--9511146 Score: 327
Period size: 98 Copynumber: 1.9 Consensus size: 98
9510951 ATACAATAAA
*
9510961 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCTAATACGTTAGGGCACAATC
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
* *
9511026 CCTTTAGAATCTCAAACTCGGAATATTTCCTTT
66 CCTTTACAATCCCAAACTCGGAATATTTCCTTT
* *
9511059 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCGCACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
9511124 CCTTTACAATCCCAAACTCGGAA
66 CCTTTACAATCCCAAACTCGGAA
9511147 NNNNNNNNNN
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 83 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTACAATCCCAAACTCGGAATATTTCCTTT
Found at i:9512622 original size:23 final size:24
Alignment explanation
Indices: 9512592--9512659 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 24
9512582 AAATTAAATC
9512592 TCTAAGATTACA-AAATCATATCT
1 TCTAAGATTACATAAATCATATCT
* *
9512615 TCTAAGATTATATATATCATA---
1 TCTAAGATTACATAAATCATATCT
* *
9512636 TCTAAGATTGCATATATCATATCT
1 TCTAAGATTACATAAATCATATCT
9512660 AAGATTGCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
21 19 0.51
23 11 0.30
24 7 0.19
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.40
Consensus pattern (24 bp):
TCTAAGATTACATAAATCATATCT
Found at i:9512641 original size:21 final size:21
Alignment explanation
Indices: 9512615--9512677 Score: 108
Period size: 21 Copynumber: 3.0 Consensus size: 21
9512605 AATCATATCT
**
9512615 TCTAAGATTATATATATCATA
1 TCTAAGATTGCATATATCATA
9512636 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
9512657 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
9512678 GCTGCCCCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.40
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:9513000 original size:44 final size:45
Alignment explanation
Indices: 9512903--9513480 Score: 494
Period size: 44 Copynumber: 13.1 Consensus size: 45
9512893 GAACAAAATT
* * * *
9512903 TGCTATCTTCGATCTTCTTCACGC-C-AATACATGAAGACAAGATC
1 TGCTATCTTCGATCTACTTCGC-CACTAATATAGGAAGACAAGATC
* * * *
9512947 TGCTTTCTTCGATCAACTTCGCCACTAGTATGGGAAGACAAGATC
1 TGCTATCTTCGATCTACTTCGCCACTAATATAGGAAGACAAGATC
* * * * *
9512992 TAC-ATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATC
1 TGCTATCTTCGATCTACTTCGCCACTAATATAGGAAGACAAGATC
* * * *
9513036 TGCTATCTTCGATTTACTTCACGC-C-AATACATGAAGACAAGATC
1 TGCTATCTTCGATCTACTTCGC-CACTAATATAGGAAGACAAGATC
* * * *
9513080 TGCTTTCTTCGATCTACTTCGCCACCAGTAT-GGGAGACAAGATC
1 TGCTATCTTCGATCTACTTCGCCACTAATATAGGAAGACAAGATC
* * * * *
9513124 TGC-ATCTTCGATCCACTTC-CTACCAACATAGGAAGACAGGATC
1 TGCTATCTTCGATCTACTTCGCCACTAATATAGGAAGACAAGATC
* ** *
9513167 TGCTATCTTCGATCTACTTCACGC-C-AATGCATGAAGACAAGATC
1 TGCTATCTTCGATCTACTTCGC-CACTAATATAGGAAGACAAGATC
* * * * *
9513211 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATT
1 TGCTATCTTCGATCTACTTCGCCACTAATATAGGAAGACAAGATC
* *
9513256 TGC-ATCTTCGATCCAC-TC-CCTACTAATATAGGAAGACAGGA-C
1 TGCTATCTTCGATCTACTTCGCC-ACTAATATAGGAAGACAAGATC
* * * *
9513298 TTGCTATCTTCGATCTACTTC-ACGCTAATACATGAAGACAAGATC
1 -TGCTATCTTCGATCTACTTCGCCACTAATATAGGAAGACAAGATC
* * * *
9513343 TGCTTTCTTCGATCTACTTCGCAACCAGTATAGGAAGACAAGATC
1 TGCTATCTTCGATCTACTTCGCCACTAATATAGGAAGACAAGATC
* * *
9513388 TGC-ATCTTCGATCCAC-TC-CCTACTAATATAGGAAGACAGGACC
1 TGCTATCTTCGATCTACTTCGCC-ACTAATATAGGAAGACAAGATC
* * *
9513431 TGCTATCTTCGATCTACTTCACGC-C-AATACATGAAGACAAGATC
1 TGCTATCTTCGATCTACTTCGC-CACTAATATAGGAAGACAAGATC
9513475 TGCTAT
1 TGCTAT
9513481 TTTTAACCTG
Statistics
Matches: 425, Mismatches: 86, Indels: 46
0.76 0.15 0.08
Matches are distributed among these distances:
42 10 0.02
43 75 0.18
44 257 0.60
45 81 0.19
46 1 0.00
47 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (45 bp):
TGCTATCTTCGATCTACTTCGCCACTAATATAGGAAGACAAGATC
Found at i:9513317 original size:132 final size:131
Alignment explanation
Indices: 9512902--9513478 Score: 958
Period size: 132 Copynumber: 4.4 Consensus size: 131
9512892 AGAACAAAAT
* *
9512902 TTGCTATCTTCGATCTTCTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCAACTTC
1 TTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* * *
9512967 GCCACTAGTATGGGAAGACAAGATCTACATCTTCGATCCACTTCGCTACCAATATAGGAAGACAG
66 GCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCAC-TCCCTACCAATATAGGAAGACAG
9513032 GA
130 GA
*
9513034 TCTGCTATCTTCGATTTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTT
1 T-TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTT
* *
9513099 CGCCACCAGTATGGG-AGACAAGATCTGCATCTTCGATCCACTTCCTACCAACATAGGAAGACAG
65 CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTCCCTACCAATATAGGAAGACAG
9513163 GA
130 GA
*
9513165 TCTGCTATCTTCGATCTACTTCACGCCAATGCATGAAGACAAGATCTGCTTTCTTCGATCTACTT
1 T-TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTT
* *
9513230 CGCCACCAGTATGGGAAGACAAGATTTGCATCTTCGATCCACTCCCTACTAATATAGGAAGACAG
65 CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTCCCTACCAATATAGGAAGACAG
9513295 GA
130 GA
*
9513297 CTTGCTATCTTCGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTT
1 -TTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTT
* * *
9513362 CGCAACCAGTATAGGAAGACAAGATCTGCATCTTCGATCCACTCCCTACTAATATAGGAAGACAG
65 CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTCCCTACCAATATAGGAAGACAG
9513427 GA
130 GA
*
9513429 CCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
1 -TTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
9513479 ATTTTTAACC
Statistics
Matches: 421, Mismatches: 21, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
131 100 0.24
132 246 0.58
133 75 0.18
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (131 bp):
TTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
GCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTCCCTACCAATATAGGAAGACAGG
A
Found at i:9513557 original size:44 final size:44
Alignment explanation
Indices: 9513482--9513780 Score: 219
Period size: 44 Copynumber: 6.9 Consensus size: 44
9513472 ATCTGCTATT
* * * * *
9513482 TTTAACCTGCTCCACTACAATTTTAGG-GAGATAGGATTATCGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGAGAGATAAGATTAT-GGC
* *
9513526 TTTAATCTGTTCCACTGCAACTTC-GGAGAGATAAGATT-TGCC
1 TTTAATCTGCTCCACTGCAACTTCAGGAGAGATAAGATTATGGC
* * *
9513568 ATCTTCAGTCTGCTTCACTGCAACTTCAGGAG-GATAAGACT-T-GC
1 -T-TT-AATCTGCTCCACTGCAACTTCAGGAGAGATAAGATTATGGC
* * *
9513612 TTAGTTAGTCTGCTCCACTGCAACTTCAGG-GAGATAAGACTA--GA
1 -T--TTAATCTGCTCCACTGCAACTTCAGGAGAGATAAGATTATGGC
*** * * **
9513656 TGCGATCTGCT-CACTGCAACTTCA-GAGGGATAAGATCTGTGAT
1 TTTAATCTGCTCCACTGCAACTTCAGGAGAGATAAGAT-TATGGC
* *
9513699 TTTAATCCGCTCCACTGCAACTTCAGGA-AGATAGGATTATCGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGAGAGATAAGATTAT-GGC
*
9513743 TCTAATCTGCTCCACTGCAACTTCAGG-GAGATAAGATT
1 TTTAATCTGCTCCACTGCAACTTCAGGAGAGATAAGATT
9513781 TGCCATCTTC
Statistics
Matches: 202, Mismatches: 37, Indels: 32
0.75 0.14 0.12
Matches are distributed among these distances:
39 1 0.00
40 21 0.10
41 7 0.03
42 2 0.01
43 15 0.07
44 121 0.60
45 31 0.15
46 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGCAACTTCAGGAGAGATAAGATTATGGC
Found at i:9513690 original size:84 final size:85
Alignment explanation
Indices: 9513576--9513731 Score: 221
Period size: 84 Copynumber: 1.8 Consensus size: 85
9513566 CCATCTTCAG
* * *
9513576 TCTGCTTCACTGCAACTTCAGGAGGATAAGA-CT-TGCTTAGTTAGTCTGCTCCACTGCAACTTC
1 TCTGCTTCACTGCAACTTCAGGAGGATAAGATCTGTGATT--TTAATCCGCTCCACTGCAACTTC
*
9513639 AGGGAGATAAGACTAGATGCGA
64 AGGAAGATAAGACTAGATGCGA
9513661 TCTGC-TCACTGCAACTTCA-GAGGGATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCA
1 TCTGCTTCACTGCAACTTCAGGA-GGATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCA
9513724 GGAAGATA
65 GGAAGATA
9513732 GGATTATCGG
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
83 2 0.03
84 51 0.80
85 7 0.11
86 4 0.06
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (85 bp):
TCTGCTTCACTGCAACTTCAGGAGGATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAG
GAAGATAAGACTAGATGCGA
Found at i:9513907 original size:44 final size:44
Alignment explanation
Indices: 9513859--9514043 Score: 114
Period size: 44 Copynumber: 4.2 Consensus size: 44
9513849 TATCTTGGAA
*
9513859 AGATAAGATTCGCCGTCTTCGATCTGTTCCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGTTCCACTACTGCTTAGGG
* ** * * * *
9513903 AGATAAGA-TCTACAATCTTCAACCT-TCTCCGCTGCTGCTCAGGG
1 AGATAAGATTC-GCCGTCTTCAATCTGT-TCCACTACTGCTTAGGG
* ** * * *
9513947 AGATAAGCTT-GGTGGC-TCAAATCTACTTCTCACTA-T-CTT-GGAA
1 AGATAAGATTCGCCGTCTTC-AATCT-GTTC-CACTACTGCTTAGG-G
* *
9513990 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGG
1 AGATAAGATTCGCCGTCTTCAATCTGTTCCACTACTGCTTA-GGG
9514035 AGATAAGAT
1 AGATAAGAT
9514044 CTACATTTTT
Statistics
Matches: 100, Mismatches: 27, Indels: 27
0.65 0.18 0.18
Matches are distributed among these distances:
42 9 0.09
43 22 0.22
44 51 0.51
45 16 0.16
46 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (44 bp):
AGATAAGATTCGCCGTCTTCAATCTGTTCCACTACTGCTTAGGG
Found at i:9514002 original size:131 final size:131
Alignment explanation
Indices: 9513747--9514073 Score: 476
Period size: 131 Copynumber: 2.5 Consensus size: 131
9513737 ATCGGCTCTA
* ** * * *
9513747 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAACCTTCTCCACTGCTGCTCA
1 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCT-ACATCTTCAACCTTCTCCGCTGCTGCTCA
* *
9513812 GGGAAACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCT
64 GGGAAACAAGGCTTGGTGGCTCAAATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCT
9513877 TCG
129 TCG
*
9513880 ATCTGTTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAC-ATCTTCAACCTTCTCCGCTGCTGCTCAG
* * *
9513945 GGAGATAA-GCTTGGTGGCTCAAATCTACTTCTCACTATCTTGGAAAGATAAGATTCGCCGTCTT
65 GGAAACAAGGCTTGGTGGCTCAAATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTT
9514009 CG
130 CG
* * *
9514011 ATCTGCTCCACTACTGCTTAGGGGAGATAAGATCTACATTTTTAGCCTTCTCCGCTGCTGCTC
1 ATCTGCTCCACTACTGCTTA-GGGAGATAAGATCTACATCTTCAACCTTCTCCGCTGCTGCTC
9514074 NNNNNNNNNN
Statistics
Matches: 176, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
131 98 0.56
132 63 0.36
133 15 0.09
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (131 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACATCTTCAACCTTCTCCGCTGCTGCTCAGG
GAAACAAGGCTTGGTGGCTCAAATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTC
G
Found at i:9529018 original size:98 final size:98
Alignment explanation
Indices: 9528839--9529035 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
9528829 ATACAATAAA
*
9528839 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCTAATACGTTAGGGCACAATC
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
* *
9528904 CCTTTAGAATCTCAAACTCGGAATATTTCCTTT
66 CCTTTACAATCCCAAACTCGGAATATTTCCTTT
*
9528937 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
9529002 CCTTTACAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTACAATCCCAAACTCGGAATATTTCCTTT
9529035 A
1 A
9529036 TGATTTTTAA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTACAATCCCAAACTCGGAATATTTCCTTT
Found at i:9530506 original size:23 final size:24
Alignment explanation
Indices: 9530476--9530564 Score: 75
Period size: 21 Copynumber: 4.0 Consensus size: 24
9530466 AAATTAAATC
9530476 TCTAAGATTACA-AAATCATATCT
1 TCTAAGATTACATAAATCATATCT
* *
9530499 TCTAAGATTATATATATCATA---
1 TCTAAGATTACATAAATCATATCT
* *
9530520 TCTAAGATTGCATATATCATA---
1 TCTAAGATTACATAAATCATATCT
* *
9530541 TCTAAGATTGCATATATCATATCT
1 TCTAAGATTACATAAATCATATCT
9530565 AAGGTTGCAT
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
21 40 0.69
23 11 0.19
24 7 0.12
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (24 bp):
TCTAAGATTACATAAATCATATCT
Found at i:9530525 original size:21 final size:21
Alignment explanation
Indices: 9530499--9530616 Score: 195
Period size: 21 Copynumber: 5.7 Consensus size: 21
9530489 AATCATATCT
**
9530499 TCTAAGATTATATATATCATA
1 TCTAAGATTGCATATATCATA
9530520 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
9530541 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
*
9530562 TCTAAGGTTGCATATATCATA
1 TCTAAGATTGCATATATCATA
9530583 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
9530602 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
9530617 CCGAGAAAAT
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
19 19 0.21
21 72 0.79
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:9531473 original size:19 final size:20
Alignment explanation
Indices: 9531436--9531476 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
9531426 TACAACACGA
*
9531436 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
*
9531456 TTCAATTT-TTATTCAATAT
1 TTCAATTTCATATTCAATAT
9531475 TT
1 TT
9531477 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:9531912 original size:16 final size:17
Alignment explanation
Indices: 9531879--9531950 Score: 51
Period size: 16 Copynumber: 4.2 Consensus size: 17
9531869 AAGCTATGGG
* *
9531879 TTTTTCTTTC-CTTCTC
1 TTTTTCTTTCGTTTTTC
9531895 TTTTTCTTT--TTCTTTC
1 TTTTTCTTTCGTT-TTTC
* *
9531911 TTTTTGTTTCGTTTTGC
1 TTTTTCTTTCGTTTTTC
*
9531928 TTTTGTCTTTCTTGTTTTC
1 TTTT-TCTTTCGT-TTTTC
9531947 TTTT
1 TTTT
9531951 ATTACTATAA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
15 1 0.02
16 20 0.45
17 7 0.16
18 8 0.18
19 8 0.18
ACGTcount: A:0.00, C:0.18, G:0.07, T:0.75
Consensus pattern (17 bp):
TTTTTCTTTCGTTTTTC
Found at i:9540491 original size:24 final size:24
Alignment explanation
Indices: 9540464--9540509 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
9540454 TTATTCATTT
*
9540464 TATTTATGCCTTC-ATTATTATTGG
1 TATTT-TGCCATCTATTATTATTGG
*
9540488 TATTTTGTCATCTATTATTATT
1 TATTTTGCCATCTATTATTATT
9540510 TCATTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.22, C:0.11, G:0.09, T:0.59
Consensus pattern (24 bp):
TATTTTGCCATCTATTATTATTGG
Found at i:9540737 original size:17 final size:17
Alignment explanation
Indices: 9540702--9540737 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
9540692 TTCTTTTACA
9540702 TTATTTATGTATTTATT
1 TTATTTATGTATTTATT
* *
9540719 TTATTTATTTATTTGTT
1 TTATTTATGTATTTATT
9540736 TT
1 TT
9540738 TTAAGTTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (17 bp):
TTATTTATGTATTTATT
Found at i:9542955 original size:25 final size:23
Alignment explanation
Indices: 9542923--9542975 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
9542913 TTGTCTGGGG
*
9542923 TTTTTTTCTTCATGCTTCCTTTTC
1 TTTTTTTCTTAAT-CTTCCTTTTC
9542947 TTTTATTTCTTAATCTT-CTTTT-
1 TTTT-TTTCTTAATCTTCCTTTTC
9542969 TTTTTTT
1 TTTTTTT
9542976 ATCGAAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 3 0.11
22 4 0.15
23 5 0.19
24 7 0.26
25 8 0.30
ACGTcount: A:0.08, C:0.17, G:0.02, T:0.74
Consensus pattern (23 bp):
TTTTTTTCTTAATCTTCCTTTTC
Found at i:9543423 original size:5 final size:6
Alignment explanation
Indices: 9543406--9543432 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9543396 TTGATAAAGT
9543406 GAGGGG GAGGGG GAGGGG GAGGGG GAG
1 GAGGGG GAGGGG GAGGGG GAGGGG GAG
9543433 ACCACAGCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (6 bp):
GAGGGG
Found at i:9544240 original size:24 final size:23
Alignment explanation
Indices: 9544213--9544258 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
9544203 GGTTGGTAGG
* *
9544213 AAATTTTAGTTAAAATAATATTAA
1 AAATTGTAATTAAAATAA-ATTAA
*
9544237 AAATTGTAATTAATATAAATTA
1 AAATTGTAATTAAAATAAATTA
9544259 TAAAGTAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (23 bp):
AAATTGTAATTAAAATAAATTAA
Found at i:9545348 original size:28 final size:27
Alignment explanation
Indices: 9545316--9545412 Score: 99
Period size: 26 Copynumber: 3.6 Consensus size: 27
9545306 GATTCTCTGA
9545316 AGCTTGTGTGAGCAACATCGAATATGTC
1 AGCTTGTGTGAGCAAC-TCGAATATGTC
* * * * *
9545344 AGCTTGTGTGAGCAACCCTAGTTTG-A
1 AGCTTGTGTGAGCAACTCGAATATGTC
* *
9545370 AGCTTGTCTGAGCAGCTCGAATATGTC
1 AGCTTGTGTGAGCAACTCGAATATGTC
*
9545397 AGCTTAT-TGAGCAACT
1 AGCTTGTGTGAGCAACT
9545413 TAGTCTCATG
Statistics
Matches: 54, Mismatches: 14, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
26 27 0.50
27 11 0.20
28 16 0.30
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (27 bp):
AGCTTGTGTGAGCAACTCGAATATGTC
Found at i:9547706 original size:16 final size:16
Alignment explanation
Indices: 9547673--9547705 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9547663 TGTTCTTTTA
9547673 TTGTTTTCATTTGATT
1 TTGTTTTCATTTGATT
*
9547689 TTGTTTTCCTTTG-TT
1 TTGTTTTCATTTGATT
9547704 TT
1 TT
9547706 TTGAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.06, C:0.09, G:0.12, T:0.73
Consensus pattern (16 bp):
TTGTTTTCATTTGATT
Found at i:9553212 original size:1 final size:1
Alignment explanation
Indices: 9553206--9553315 Score: 76
Period size: 1 Copynumber: 110.0 Consensus size: 1
9553196 GATTCAGTTC
* * * * * * * * *
9553206 AAAAAAAAGAGAAAAAAAAAGAAAAAAACAAAAAACAAAAAAAATAGAAAAAAATAAAAAAAAGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * *
9553271 GAACAAAAAAGAACAAAAAAATAAAAAAAAAAAGAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9553316 CTCTACCGGG
Statistics
Matches: 77, Mismatches: 32, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 77 1.00
ACGTcount: A:0.85, C:0.05, G:0.07, T:0.03
Consensus pattern (1 bp):
A
Found at i:9553257 original size:33 final size:30
Alignment explanation
Indices: 9553219--9553315 Score: 95
Period size: 33 Copynumber: 2.9 Consensus size: 30
9553209 AAAAAGAGAA
*
9553219 AAAAAAAGAAAAAAACAAAAAACAAAAAAAAT
1 AAAAAAA-AAAAAAA-AAAAAACAAAAAAAAC
*
9553251 AGAAAAAAATAAAAAAAAGAGAACAAAAAAGAAC
1 A-AAAAAAA-AAAAAAAA-AAAACAAAAAA-AAC
9553285 AAAAAAATAAAAAAAAAAAGAAACAAAAAAA
1 -AAAAAA-AAAAAAAAAAA-AAACAAAAAAA
9553316 CTCTACCGGG
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
32 4 0.07
33 24 0.44
34 24 0.44
35 3 0.05
ACGTcount: A:0.86, C:0.05, G:0.06, T:0.03
Consensus pattern (30 bp):
AAAAAAAAAAAAAAAAAAAACAAAAAAAAC
Found at i:9553302 original size:43 final size:43
Alignment explanation
Indices: 9553218--9553301 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 43
9553208 AAAAAAGAGA
*
9553218 AAAAAAAAGAAAAAAACAAAAAACAAAAAAAATAGAAAAAAAT
1 AAAAAAAAGAAAAAAACAAAAAACAAAAAAAATAAAAAAAAAT
* *
9553261 AAAAAAAAGAGAACAAA-AAAGAAC-AAAAAAATAAAAAAAAA
1 AAAAAAAAGA-AAAAAACAAAAAACAAAAAAAATAAAAAAAAA
9553302 AAGAAACAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 16 0.43
43 16 0.43
44 5 0.14
ACGTcount: A:0.86, C:0.05, G:0.06, T:0.04
Consensus pattern (43 bp):
AAAAAAAAGAAAAAAACAAAAAACAAAAAAAATAAAAAAAAAT
Found at i:9553313 original size:55 final size:55
Alignment explanation
Indices: 9553206--9553314 Score: 150
Period size: 55 Copynumber: 2.0 Consensus size: 55
9553196 GATTCAGTTC
* *
9553206 AAAAAAAAGAGAAAAAAAAAGAAAAAAACAAAAAACAAAAAAAATAGAAAAAAAT
1 AAAAAAAAGAGAAAAAAAAAGAAAAAAACAAAAAACAAAAAAAAGAAAAAAAAAT
* *
9553261 AAAAAAAAGAGAACAAAAAAGAACAAAAA-AATAAA-AAAAAAAAGAAACAAAAAA
1 AAAAAAAAGAGAAAAAAAAAGAA-AAAAACAAAAAACAAAAAAAAGAAA-AAAAAA
9553315 ACTCTACCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
54 10 0.21
55 33 0.69
56 5 0.10
ACGTcount: A:0.85, C:0.05, G:0.07, T:0.03
Consensus pattern (55 bp):
AAAAAAAAGAGAAAAAAAAAGAAAAAAACAAAAAACAAAAAAAAGAAAAAAAAAT
Found at i:9553820 original size:16 final size:15
Alignment explanation
Indices: 9553801--9553833 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
9553791 AAAGGATGAG
9553801 AAATGAAAAAGTGAAA
1 AAATGAAAAA-TGAAA
9553817 AAATGAAAAATGAAA
1 AAATGAAAAATGAAA
9553832 AA
1 AA
9553834 GTAAAATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.73, C:0.00, G:0.15, T:0.12
Consensus pattern (15 bp):
AAATGAAAAATGAAA
Found at i:9553827 original size:23 final size:22
Alignment explanation
Indices: 9553796--9553839 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
9553786 AAAAAAAAGG
*
9553796 ATGAGAAATGAAAAAGTGAAAAA
1 ATGAAAAATGAAAAAGT-AAAAA
9553819 ATGAAAAATGAAAAAGTAAAA
1 ATGAAAAATGAAAAAGTAAAA
9553840 TAGAGAGGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.14
Consensus pattern (22 bp):
ATGAAAAATGAAAAAGTAAAAA
Found at i:9555249 original size:132 final size:132
Alignment explanation
Indices: 9555098--9555801 Score: 891
Period size: 132 Copynumber: 5.3 Consensus size: 132
9555088 ACAGAGAAGC
* * * *
9555098 AGATTGAAGATTTCAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCAAAAATGGCAGATTTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTT
* **
9555163 ACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-CTTCCCTGGGCAACAGTG
66 ACCTCCCTAG-GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGTCGGCAGTG
9555226 GAAT
129 GAAT
* * * * * * *
9555230 AGATTGAAGATTTTAGATCTTACCTTCCTACA-TAGACAGCGAAGCAGATCGAAGATGGCAGATT
1 AGATTGAAGATTTCAGATCTTATCTCCCTA-AGCAG-TAGTGGAGCAGATCGAAGATGGCAGATT
* * * *
9555294 TTACCT-CCTCGTGGTTATAGTGGAATACATTGAAGCC-GTAATTCTATCTCCCTGGTTGGCAGT
64 TTACCTCCCTAG-GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGTCGGCAGT
9555357 GGAAT
128 GGAAT
* * * *
9555362 AGATTGAATATTTCAGATCTTATTTCCCTAAGCATTAGTGGAGTAGATCGAAGATGGCAGATTTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTT
* * * *
9555427 ACTTCTCTAGGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGA
66 ACCTCCCTAGGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGTCGGCAGTGGA
9555492 AT
131 AT
* * * * *
9555494 AGATTGAAGATTACAGATCTTATCTCCCTAGGCATTAGTAGAGTAGATCGAAGATGGCAGATTTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTT
* *
9555559 ACCTCCCT-GAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCCCCCTGGTTGGCAGTGG
66 ACCTCCCTAG-GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGTCGGCAGTGG
9555623 AAT
130 AAT
* * * * * *
9555626 AGATTGAATATTTCAGATCTTATTTCCTTAAGCGGTAGTGGAGCAGATTGAAGATGGCGGATTTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTT
* *
9555691 ACCTCCCTAGGGTTACAATGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGTCGACAGTGGA
66 ACCTCCCTAGGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGTCGGCAGTGGA
9555756 AT
131 AT
* * *
9555758 CGATCGAAGAATAAT-AGATCTTATCTCCCTAAGCAGTAGTGGAG
1 AGATTGAAG-AT-TTCAGATCTTATCTCCCTAAGCAGTAGTGGAG
9555802 TAGACTGATG
Statistics
Matches: 493, Mismatches: 68, Indels: 21
0.85 0.12 0.04
Matches are distributed among these distances:
131 54 0.11
132 353 0.72
133 85 0.17
134 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (132 bp):
AGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTT
ACCTCCCTAGGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGTCGGCAGTGGA
AT
Found at i:9555423 original size:44 final size:44
Alignment explanation
Indices: 9555375--9555566 Score: 113
Period size: 44 Copynumber: 4.4 Consensus size: 44
9555365 TTGAATATTT
*
9555375 CAGATCTTATTTCCCTAAGCATTAGTGGAGTAGATCGAAGATGG
1 CAGATCTTATCTCCCTAAGCATTAGTGGAGTAGATCGAAGATGG
* * ** * * ***
9555419 CAGATTTTA-CTTCTCT-AGGGTTACAGTGGAGTACATTGAAGCCAG
1 CAGATCTTATC-TCCCTAAGCATT--AGTGGAGTAGATCGAAGATGG
* ** ** * * **
9555464 TA-AT-TCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTA
1 CAGATCT-TATCTCCCTAAGCATTAGTGGAGTAGATCGAAGATGG
* *
9555507 CAGATCTTATCTCCCTAGGCATTAGTAGAGTAGATCGAAGATGG
1 CAGATCTTATCTCCCTAAGCATTAGTGGAGTAGATCGAAGATGG
* *
9555551 CAGATTTTACCTCCCT
1 CAGATCTTATCTCCCT
9555567 GAGGTTACAG
Statistics
Matches: 106, Mismatches: 34, Indels: 16
0.68 0.22 0.10
Matches are distributed among these distances:
43 21 0.20
44 65 0.61
45 20 0.19
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (44 bp):
CAGATCTTATCTCCCTAAGCATTAGTGGAGTAGATCGAAGATGG
Found at i:9555910 original size:396 final size:395
Alignment explanation
Indices: 9555097--9555914 Score: 868
Period size: 396 Copynumber: 2.1 Consensus size: 395
9555087 GACAGAGAAG
* * * *
9555097 CAGATTGAAGATTTCAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCAAAAATGGCAGATTT
1 CAGATTGAACA-TTAAGATCTTATCTCCCTAAACAGTAGTAGAGCAGATCAAAAATGGCAGATTT
* *
9555162 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGG
65 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTCCCCTGGGCAACAGTGG
* *
9555227 AATAGATTGAAGATTTTAGATCTTACCTTCCTACATAGACAGCGAAGCAGATCGAAGATGGCAGA
130 AATAGATTGAAGATTTCAGATCTTACCTTCCTACAGAGACAGCGAAGCAGATCGAAGATGGCAGA
* * * * *
9555292 TTTTACCTCCTCGTGGTTATAGTGGAATACATTGAAGCCGTAATTCTATCTCCCTGGTTGGCAGT
195 TTTTACCTCCTAGTGGTTACAATGGAATACATTGAAGCCGTAATTCTATCTCCCTGGTCGACAGT
* * * * * *
9555357 GGAATAGATTGAATATTTCAGATCTTATTTCCCTAAGCATTAGTGGAGTAGATCGAAGATGGCAG
260 GGAATAGATCGAAAATATCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCAG
* * ** * * **
9555422 ATTTTACTTCTCTAGGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
325 ATCTTACTTCTCGACAGTTACAGTGGAGTAAATTGAAGCAAGTAATTCTATCTCCCTAAGCAGCA
9555487 GTGGAA
390 GTGGAA
* * ** * * * *
9555493 TAGATTGAAGATTACAGATCTTATCTCCCTAGGCATTAGTAGAGTAGATCGAAGATGGCAGATTT
1 CAGATTGAACATTA-AGATCTTATCTCCCTAAACAGTAGTAGAGCAGATCAAAAATGGCAGATTT
****
9555558 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCCCCCTGGTTGGCAGTG
65 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-CCCCTGGGCAACAGTG
* * * ** * * * *
9555622 GAATAGATTGAATATTTCAGATCTTA-TTTCCTTA-AGCGGTAGTGGAGCAGATTGAAGATGGCG
129 GAATAGATTGAAGATTTCAGATCTTACCTTCC-TACAGAGACAGCGAAGCAGATCGAAGATGGCA
*
9555685 GATTTTACCTCCCTAG-GGTTACAATGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGTCGA
193 GATTTTACCT-CCTAGTGGTTACAATGGAATACATTGAAGCC-GTAATTCTATCTCCCTGGTCGA
* *
9555749 CAGTGGAATCGATCGAAGAATAAT-AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGA-CTGATG
256 CAGTGGAATAGATCGAA-AAT-ATCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-GAAG
* ** * * *
9555812 ACGGCGGATCTTGTTTCCTCGACATTGTA-ATTGGA-TAAATTGAAG-AAGATAA-TCATATTTC
318 ACGGCAGATCTTACTT-CTCGACAGT-TACAGTGGAGTAAATTGAAGCAAG-TAATTC-TATCTC
** *
9555873 CCTAAAGTTGCAGTGGAG
379 CCT-AAGCAGCAGTGGAA
*
9555891 CGGATT-AACATCT-AGATCTTATCT
1 CAGATTGAACAT-TAAGATCTTATCT
9555915 TTCTGAGGTT
Statistics
Matches: 347, Mismatches: 61, Indels: 28
0.80 0.14 0.06
Matches are distributed among these distances:
395 60 0.17
396 189 0.54
397 71 0.20
398 25 0.07
399 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (395 bp):
CAGATTGAACATTAAGATCTTATCTCCCTAAACAGTAGTAGAGCAGATCAAAAATGGCAGATTTT
ACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTCCCCTGGGCAACAGTGGA
ATAGATTGAAGATTTCAGATCTTACCTTCCTACAGAGACAGCGAAGCAGATCGAAGATGGCAGAT
TTTACCTCCTAGTGGTTACAATGGAATACATTGAAGCCGTAATTCTATCTCCCTGGTCGACAGTG
GAATAGATCGAAAATATCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCAGA
TCTTACTTCTCGACAGTTACAGTGGAGTAAATTGAAGCAAGTAATTCTATCTCCCTAAGCAGCAG
TGGAA
Found at i:9555966 original size:40 final size:41
Alignment explanation
Indices: 9555867--9556104 Score: 155
Period size: 40 Copynumber: 5.7 Consensus size: 41
9555857 AAGATAATCA
* * * *
9555867 TATTTCCCTAAAGTTGCAGTGGAGCGGATTAACATCTAGATCT
1 TATTTCCCTGAAGTTGCAGTAGAGCAGA-TAACATCCAG-TCT
* * *
9555910 TATCTT-TCTGAGGTTGCAG-AGAGCAGATCACATCCAGTCT
1 TAT-TTCCCTGAAGTTGCAGTAGAGCAGATAACATCCAGTCT
* * *
9555950 TATTTCCCTGAAGTTGCAGTGGAGCAGACAGA-AGAAAT-CAATCC
1 TATTTCCCTGAAGTTGCAGT--AG-AG-CAGATA-ACATCCAGTCT
* * *
9555994 TATCTCCCTGAAGTTACAGTAGAGCGGATTAACATCCAGATCT
1 TATTTCCCTGAAGTTGCAGTAGAGCAGA-TAACATCCAG-TCT
* * ** *
9556037 TATCTT-TCTGAGGTTGCAG-AGAGCAGATCGCATCTAGTCT
1 TAT-TTCCCTGAAGTTGCAGTAGAGCAGATAACATCCAGTCT
* *
9556077 TATCTCCCTGAAGTTGCAGTGGAGCAGA
1 TATTTCCCTGAAGTTGCAGTAGAGCAGA
9556105 CTAAAAATAG
Statistics
Matches: 149, Mismatches: 31, Indels: 32
0.70 0.15 0.15
Matches are distributed among these distances:
39 3 0.02
40 37 0.25
41 27 0.18
42 18 0.12
43 30 0.20
44 27 0.18
45 7 0.05
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (41 bp):
TATTTCCCTGAAGTTGCAGTAGAGCAGATAACATCCAGTCT
Found at i:9556022 original size:127 final size:127
Alignment explanation
Indices: 9555853--9556105 Score: 409
Period size: 127 Copynumber: 2.0 Consensus size: 127
9555843 TGGATAAATT
* * * *
9555853 GAAGAAGATAATCATATTTCCCTAAAGTTGCAGTGGAGCGGATTAACATCTAGATCTTATCTTTC
1 GAAGAAGATAATCATATCTCCCTAAAGTTACAGTAGAGCGGATTAACATCCAGATCTTATCTTTC
*
9555918 TGAGGTTGCAGAGAGCAGATCACATCCAGTCTTATTTCCCTGAAGTTGCAGTGGAGCAGACA
66 TGAGGTTGCAGAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
* *
9555980 GAAGAA-ATCAATCCTATCTCCCTGAAGTTACAGTAGAGCGGATTAACATCCAGATCTTATCTTT
1 GAAGAAGAT-AATCATATCTCCCTAAAGTTACAGTAGAGCGGATTAACATCCAGATCTTATCTTT
* *
9556044 CTGAGGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
65 CTGAGGTTGCAGAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
9556106 TAAAAATAGC
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
126 2 0.02
127 114 0.98
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (127 bp):
GAAGAAGATAATCATATCTCCCTAAAGTTACAGTAGAGCGGATTAACATCCAGATCTTATCTTTC
TGAGGTTGCAGAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
Found at i:9568609 original size:11 final size:11
Alignment explanation
Indices: 9568593--9568622 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
9568583 CTTCCCTTTA
9568593 ATTTTTTATTT
1 ATTTTTTATTT
*
9568604 ATTTTTAATTT
1 ATTTTTTATTT
9568615 ATTTTTTA
1 ATTTTTTA
9568623 AAAAGCAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
ATTTTTTATTT
Found at i:9580814 original size:85 final size:85
Alignment explanation
Indices: 9580711--9580933 Score: 261
Period size: 85 Copynumber: 2.6 Consensus size: 85
9580701 ACATAAACGT
* *
9580711 CGCTAAAGATCATGTTCTTTAGCGGCGCTAATT-TTTCAAACGCCGCTAAAGAACATGACCTTTA
1 CGCTAAAGATCATGTTCTTTAGCGGCGCT-ATTGTTACAAACGCCGCTAAAGAACATGACATTTA
9580775 GCGACGCTTTTTCATACATGC
65 GCGACGCTTTTTCATACATGC
* * *
9580796 CGCTAAAGGTGATGTTCTTTAGCGGCGCTATTGTTACAAACGCCGCTAAAGACCATGACATTTAG
1 CGCTAAAGATCATGTTCTTTAGCGGCGCTATTGTTACAAACGCCGCTAAAGAACATGACATTTAG
* * *
9580861 CGGCGCTTTTT-ACCACAATCAC
66 CGACGCTTTTTCA-TAC-AT-GC
* *** * * *
9580883 CGCTAAAGAACATCACCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAG
1 CGCTAAAGATCATGTTCTTTAGCGGCGCTATTGTTACAAACGCCGCTAAAG
9580934 GTCATGTTCT
Statistics
Matches: 117, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
84 4 0.03
85 68 0.58
86 2 0.02
87 43 0.37
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (85 bp):
CGCTAAAGATCATGTTCTTTAGCGGCGCTATTGTTACAAACGCCGCTAAAGAACATGACATTTAG
CGACGCTTTTTCATACATGC
Found at i:9580932 original size:87 final size:85
Alignment explanation
Indices: 9580685--9580933 Score: 223
Period size: 85 Copynumber: 2.9 Consensus size: 85
9580675 AAACAGGCTA
* * * * *** **
9580685 TTAGCGTCGCTTTTTCACATAAACGTCGCTAAAGATCATGTTCTTTAGCGGCGCTAATT-TTTCA
1 TTAGCGACGCTTTTTCACACATAC--CGCTAAAGAACATCACCTTTAGCGGCGCT-ATTATCACA
*
9580749 AACGCCGCTAAAGAACATGACCT
63 AACGCCGCTAAAGAACATGACAT
* * *** *** * *
9580772 TTAGCGACGCTTTTTCATACATGCCGCTAAAGGTGATGTTCTTTAGCGGCGCTATTGTTACAAAC
1 TTAGCGACGCTTTTTCACACATACCGCTAAAGAACATCACCTTTAGCGGCGCTATTATCACAAAC
*
9580837 GCCGCTAAAGACCATGACAT
66 GCCGCTAAAGAACATGACAT
* *
9580857 TTAGCGGCGCTTTTT-ACCACAATCACCGCTAAAGAACATCACCTTTAGCGGCGCTTTTATCACA
1 TTAGCGACGCTTTTTCA-CAC-AT-ACCGCTAAAGAACATCACCTTTAGCGGCGCTATTATCACA
9580921 AACGCCGCTAAAG
63 AACGCCGCTAAAG
9580934 GTCATGTTCT
Statistics
Matches: 136, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
84 4 0.03
85 68 0.50
86 2 0.01
87 62 0.46
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (85 bp):
TTAGCGACGCTTTTTCACACATACCGCTAAAGAACATCACCTTTAGCGGCGCTATTATCACAAAC
GCCGCTAAAGAACATGACAT
Found at i:9580956 original size:43 final size:42
Alignment explanation
Indices: 9580685--9580948 Score: 228
Period size: 43 Copynumber: 6.1 Consensus size: 42
9580675 AAACAGGCTA
* *
9580685 TTAGCGTCGCTTTTTCACATAAACGTCGCTAAAGATCATGTTCT
1 TTAGCGGCGCTTTTTCAC--AAACGCCGCTAAAGATCATGTTCT
* * **
9580729 TTAGCGGCGCTAATTTT-TCAAACGCCGCTAAAGAACATGACCT
1 TTAGCGGCGCT--TTTTCACAAACGCCGCTAAAGATCATGTTCT
* * * * * *
9580772 TTAGCGACGCTTTTTCATACATGCCGCTAAAGGTGATGTTCT
1 TTAGCGGCGCTTTTTCACAAACGCCGCTAAAGATCATGTTCT
* *
9580814 TTAGCGGCGCTATTGTT-ACAAACGCCGCTAAAGACCATG-ACAT
1 TTAGCGGCGCT-TT-TTCACAAACGCCGCTAAAGATCATGTTC-T
* * * ***
9580857 TTAGCGGCGCTTTTTACCACAATCACCGCTAAAGAACATCACCT
1 TTAGCGGCGCTTTTT--CACAAACGCCGCTAAAGATCATGTTCT
*
9580901 TTAGCGGCGCTTTTATCACAAACGCCGCTAAAGGTCATGTTCT
1 TTAGCGGCGCTTTT-TCACAAACGCCGCTAAAGATCATGTTCT
9580944 TTAGC
1 TTAGC
9580949 AGTGCTTTAC
Statistics
Matches: 173, Mismatches: 36, Indels: 23
0.75 0.16 0.10
Matches are distributed among these distances:
41 6 0.03
42 30 0.17
43 85 0.49
44 45 0.26
45 3 0.02
46 4 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (42 bp):
TTAGCGGCGCTTTTTCACAAACGCCGCTAAAGATCATGTTCT
Found at i:9581282 original size:21 final size:21
Alignment explanation
Indices: 9581257--9581306 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
9581247 TTCTGCTCTG
9581257 CTCTGCTTCCCTCGCTGCTGC
1 CTCTGCTTCCCTCGCTGCTGC
*
9581278 CTCTGCTTCCCTCGTTGCTGC
1 CTCTGCTTCCCTCGCTGCTGC
9581299 CTCTGCTT
1 CTCTGCTT
9581307 TAAGTTGTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.00, C:0.44, G:0.18, T:0.38
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCTGC
Found at i:9581374 original size:66 final size:66
Alignment explanation
Indices: 9581277--9581433 Score: 260
Period size: 66 Copynumber: 2.4 Consensus size: 66
9581267 CTCGCTGCTG
* * * *
9581277 CCTCTGCTTCCCTCGTTGCTGCCTCTGCTTTAAGTTGTAGCTGGAGTGCTTCATATTTTCTTTGA
1 CCTCAGCTTCTCTCGATGCTGCCTCTACTTTAAGTTGTAGCTGGAGTGCTTCATATTTTCTTTGA
9581342 A
66 A
*
9581343 CCTCAGCTTCTCTCGATGTTGCCTCTACTTTAAGTTGTAGCTGGAGTGCTTCATATTTTCTTTGA
1 CCTCAGCTTCTCTCGATGCTGCCTCTACTTTAAGTTGTAGCTGGAGTGCTTCATATTTTCTTTGA
9581408 A
66 A
*
9581409 CCTCAGCTTCTCTTGATGCTGCCTC
1 CCTCAGCTTCTCTCGATGCTGCCTC
9581434 CGTTTTTGAT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 84 1.00
ACGTcount: A:0.13, C:0.27, G:0.18, T:0.41
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGATGCTGCCTCTACTTTAAGTTGTAGCTGGAGTGCTTCATATTTTCTTTGA
A
Found at i:9584451 original size:22 final size:22
Alignment explanation
Indices: 9584421--9584463 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
9584411 ACACCAAAAC
* *
9584421 AGGCTTTTAGCGGCGTTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
9584443 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
9584464 AGCGCCGCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.44
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:9584618 original size:42 final size:43
Alignment explanation
Indices: 9584569--9584658 Score: 119
Period size: 42 Copynumber: 2.1 Consensus size: 43
9584559 ATCTCACAAA
*
9584569 CGCCGCTGAAGAGTAAGAGCTTTACCGGCG-CTTTAGTAGAAG
1 CGCCGCTGAAGAGTAAGACCTTTACCGGCGTCTTTAGTAGAAG
* * * * *
9584611 CGCCGCTGAAGAGTAATACCTTTAGCGGCGTTTTTGGTATAAG
1 CGCCGCTGAAGAGTAAGACCTTTACCGGCGTCTTTAGTAGAAG
9584654 CGCCG
1 CGCCG
9584659 TTATAGACTA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 27 0.66
43 14 0.34
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.24
Consensus pattern (43 bp):
CGCCGCTGAAGAGTAAGACCTTTACCGGCGTCTTTAGTAGAAG
Found at i:9584848 original size:43 final size:43
Alignment explanation
Indices: 9584787--9584923 Score: 179
Period size: 43 Copynumber: 3.2 Consensus size: 43
9584777 GTAAGAGCTT
** *
9584787 TAAAGACCCTGATCTATAGCGGCG-TTTTGGTCACAAACGCCAC
1 TAAAGACCCTGATCTATAGCGGCGCTTTT-ACCAAAAACGCCAC
*
9584830 TAAAGACCCTGATCTATAGCGGCGCTTTTACCAAAAACGCCGC
1 TAAAGACCCTGATCTATAGCGGCGCTTTTACCAAAAACGCCAC
* *
9584873 TAAAGACCCT-ATTCTATAGCGGCGCTTATACCAAAAAACGCCGC
1 TAAAGACCCTGA-TCTATAGCGGCGCTTTTACC-AAAAACGCCAC
9584917 TAAAGAC
1 TAAAGAC
9584924 TAACACCTTT
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
42 1 0.01
43 63 0.73
44 22 0.26
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.21
Consensus pattern (43 bp):
TAAAGACCCTGATCTATAGCGGCGCTTTTACCAAAAACGCCAC
Found at i:9585301 original size:21 final size:21
Alignment explanation
Indices: 9585272--9585383 Score: 100
Period size: 21 Copynumber: 5.3 Consensus size: 21
9585262 TTTGACGCTG
9585272 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* **
9585293 CTCTACTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
9585314 CTCTGCTTCCCTC-TTAGCAGC
1 CTCTGCTTCCCTCGCT-GCAGC
* * * *
9585335 CTGTACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
* * *
9585356 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
9585377 ATCTGCT
1 CTCTGCT
9585384 CTAAGCTGCT
Statistics
Matches: 73, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
20 1 0.01
21 71 0.97
22 1 0.01
ACGTcount: A:0.06, C:0.43, G:0.16, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:9585319 original size:42 final size:42
Alignment explanation
Indices: 9585272--9585373 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 42
9585262 TTTGACGCTG
**
9585272 CTCTGCTTCCCTCGCTGCAGCCTCTACTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGCCTCTACTTCCCTCGCTGCAGC
* * * *
9585314 CTCTGCTTCCCTC-TTAGCAGCCTGTACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCT-GCAGCCTCTACTTCCCTCGCTGCAGC
* *
9585356 CTCTGCTTCTCTTGCTGC
1 CTCTGCTTCCCTCGCTGC
9585374 CGCATCTGCT
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.02
42 47 0.96
43 1 0.02
ACGTcount: A:0.06, C:0.43, G:0.16, T:0.35
Consensus pattern (42 bp):
CTCTGCTTCCCTCGCTGCAGCCTCTACTTCCCTCGCTGCAGC
Found at i:9585445 original size:66 final size:66
Alignment explanation
Indices: 9585355--9585501 Score: 199
Period size: 66 Copynumber: 2.2 Consensus size: 66
9585345 CTCGCTGCCG
* * *
9585355 CCTCTGCTTCTCTTGCTGCCGCATCTGCTCTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTTGTT
1 CCTCAGCTTCTCTCGCTGCCGCATCTGCTCTAAGCTG-TAGCTGGAGTTCTTCATATCTTCT-TT
9585418 GAA
64 GAA
* * *
9585421 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATCTTCTTTGA
1 CCTCAGCTTCTCTCGCTGCCGCATCTGCTCTAAGCTGTAGCTGGAGTTCTTCATATCTTCTTTGA
9585486 A
66 A
*
9585487 CATCAGCTTCTCTCG
1 CCTCAGCTTCTCTCG
9585502 ATGTTGCCTC
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
65 1 0.01
66 67 0.93
67 4 0.06
ACGTcount: A:0.14, C:0.29, G:0.18, T:0.39
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGCTGCCGCATCTGCTCTAAGCTGTAGCTGGAGTTCTTCATATCTTCTTTGA
A
Found at i:9585517 original size:66 final size:66
Alignment explanation
Indices: 9585394--9585524 Score: 183
Period size: 66 Copynumber: 2.0 Consensus size: 66
9585384 CTAAGCTGCT
* * * *
9585394 GCTGGAGTTCTTCATACTTTTGTTGAACCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGT
1 GCTGGAGTTCTTCATACTTCTGTTGAACATCAGCTTCTCTCGATGCTGCATCCGCTTTAAGTTGT
9585459 A
66 A
* * *
9585460 GCTGGAGTTCTTCATATCTTCT-TTGAACATCAGCTTCTCTCGATGTTGCCTCCGCTTTCAGTTG
1 GCTGGAGTTCTTCATA-CTTCTGTTGAACATCAGCTTCTCTCGATGCTGCATCCGCTTTAAGTTG
9585524 T
65 T
9585525 GTAATTTGCT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 53 0.93
67 4 0.07
ACGTcount: A:0.15, C:0.25, G:0.19, T:0.41
Consensus pattern (66 bp):
GCTGGAGTTCTTCATACTTCTGTTGAACATCAGCTTCTCTCGATGCTGCATCCGCTTTAAGTTGT
A
Found at i:9590948 original size:9 final size:9
Alignment explanation
Indices: 9590912--9591386 Score: 198
Period size: 9 Copynumber: 54.8 Consensus size: 9
9590902 AAATTGCATG
9590912 GTAAGTTAT
1 GTAAGTTAT
*
9590921 GT-A-TTGT
1 GTAAGTTAT
*
9590928 GTAAGCTAT
1 GTAAGTTAT
*
9590937 GTAAGTTGT
1 GTAAGTTAT
9590946 GT-A-TTAT
1 GTAAGTTAT
9590953 GTAAGTTAT
1 GTAAGTTAT
*
9590962 -T-ATTATACT
1 GTAAGT-TA-T
*
9590971 TTAAGTTAT
1 GTAAGTTAT
*
9590980 GTAAGTAAT
1 GTAAGTTAT
9590989 GT-A-TTAT
1 GTAAGTTAT
*
9590996 GTAAGTTGT
1 GTAAGTTAT
*
9591005 GT-A-TAAT
1 GTAAGTTAT
*
9591012 GTTAGTTAT
1 GTAAGTTAT
9591021 GTAAGTTAT
1 GTAAGTTAT
9591030 GTAAGTTAT
1 GTAAGTTAT
9591039 GT-A---A-
1 GTAAGTTAT
9591043 GTAAGTTAT
1 GTAAGTTAT
9591052 GTAAGTTAT
1 GTAAGTTAT
** *
9591061 CAAAGTAAT
1 GTAAGTTAT
*
9591070 GTATGTTAT
1 GTAAGTTAT
9591079 GTAAG-T-T
1 GTAAGTTAT
9591086 GTAAGTTAT
1 GTAAGTTAT
*
9591095 -TATGTATTAT
1 GTAAG--TTAT
*
9591105 GTAAGTTAA
1 GTAAGTTAT
* *
9591114 G-ATGGATTAC
1 GTA-AG-TTAT
9591124 GTAAGTTAT
1 GTAAGTTAT
** *
9591133 CAAAGTAAT
1 GTAAGTTAT
*
9591142 GTATGTTAT
1 GTAAGTTAT
9591151 GTAAG-T-T
1 GTAAGTTAT
9591158 GTAAGTTAT
1 GTAAGTTAT
*
9591167 -TATGTATTAT
1 GTAAG--TTAT
*
9591177 GTAAGTTAA
1 GTAAGTTAT
* *
9591186 G-ATGGATTAC
1 GTA-AG-TTAT
9591196 GTAAGTTAT
1 GTAAGTTAT
9591205 GTAAGTTAAAT
1 GTAAGTT--AT
9591216 GT-A-TTAT
1 GTAAGTTAT
9591223 GTAAG-T-T
1 GTAAGTTAT
9591230 GTAAGTTAGAT
1 GTAAGTT--AT
9591241 GT-A-TTAT
1 GTAAGTTAT
9591248 GTAAG-T-T
1 GTAAGTTAT
9591255 GTAAGTTA-
1 GTAAGTTAT
9591263 -TAATGTATTAT
1 GTAA-G--TTAT
9591274 GTAAGTTAT
1 GTAAGTTAT
9591283 GTAAGTTAAAT
1 GTAAGTT--AT
9591294 GT-A-TTAT
1 GTAAGTTAT
9591301 G-AAGGTTAT
1 GTAA-GTTAT
*
9591310 GTAAGTTGT
1 GTAAGTTAT
**
9591319 GTAAGAGAT
1 GTAAGTTAT
*
9591328 TTAAGTTAT
1 GTAAGTTAT
* *
9591337 GTGAGTTTT
1 GTAAGTTAT
9591346 GT-A-TTAT
1 GTAAGTTAT
9591353 GTAAGTTAT
1 GTAAGTTAT
*
9591362 GTAGGTTAT
1 GTAAGTTAT
* *
9591371 TTAGGTTAT
1 GTAAGTTAT
9591380 GTAAGTT
1 GTAAGTT
9591387 TTGAGTTGTT
Statistics
Matches: 347, Mismatches: 61, Indels: 116
0.66 0.12 0.22
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
7 65 0.19
8 34 0.10
9 190 0.55
10 29 0.08
11 22 0.06
12 3 0.01
ACGTcount: A:0.33, C:0.01, G:0.22, T:0.44
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:9590985 original size:43 final size:42
Alignment explanation
Indices: 9590912--9591085 Score: 141
Period size: 43 Copynumber: 4.2 Consensus size: 42
9590902 AAATTGCATG
* *
9590912 GTAAGTTATGTAT--TGTGTAAGCTATGTAAGTTGTGTATTAT
1 GTAAGTTATGTATAATGT-TAAGTTATGTAAGTTATGTATTAT
*
9590953 GTAAGTTAT-TATTATACT-TTAAGTTATGTAAGTAATGTATTAT
1 GTAAGTTATGTA-TA-A-TGTTAAGTTATGTAAGTTATGTATTAT
*
9590996 GTAAGTTGTGTATAATGTT-AGTTATGTAAGTTATGTAAGTTAT
1 GTAAGTTATGTATAATGTTAAGTTATGTAAGTTATGT-A-TTAT
* ** *
9591039 GTAAG-TAAGT-T-ATG-TAAGTTATCAAAGTAATGTATGTTAT
1 GTAAGTTATGTATAATGTTAAGTTATGTAAGTTATGTA--TTAT
9591079 GTAAGTT
1 GTAAGTT
9591086 GTAAGTTATT
Statistics
Matches: 111, Mismatches: 10, Indels: 24
0.77 0.07 0.17
Matches are distributed among these distances:
39 2 0.02
40 29 0.26
41 29 0.26
42 7 0.06
43 40 0.36
44 3 0.03
45 1 0.01
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (42 bp):
GTAAGTTATGTATAATGTTAAGTTATGTAAGTTATGTATTAT
Done.