Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 50 of 208
Found at i:13978890 original size:23 final size:22
Alignment explanation
Indices: 13978850--13978909 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
13978840 AATTATTGTA
* * * *
13978850 ATTATAATTTAAGATCAAATATT
1 ATTATAA-TTATGGTCAAACATC
13978873 ATTATAATTACTGGTCAAACATC
1 ATTATAATTA-TGGTCAAACATC
13978896 ATTATAATTATGGT
1 ATTATAATTATGGT
13978910 AATTATAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 7 0.22
23 25 0.78
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (22 bp):
ATTATAATTATGGTCAAACATC
Found at i:13980863 original size:21 final size:20
Alignment explanation
Indices: 13980824--13980867 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
13980814 GAATCTTGTG
*
13980824 ATTTTTTATGTTAAATGATGA
1 ATTTTTAATGTTAAATGAT-A
* *
13980845 ATTTTTAATGTTGATTGATA
1 ATTTTTAATGTTAAATGATA
13980865 ATT
1 ATT
13980868 AAAATTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.55
Consensus pattern (20 bp):
ATTTTTAATGTTAAATGATA
Found at i:13992933 original size:20 final size:20
Alignment explanation
Indices: 13992905--13993048 Score: 128
Period size: 20 Copynumber: 7.2 Consensus size: 20
13992895 TACCGAAGTA
*
13992905 CAAACAGGGGCACGTATGTG
1 CAAATAGGGGCACGTATGTG
*
13992925 CAAATAGGGGCACGTACGTG
1 CAAATAGGGGCACGTATGTG
*
13992945 CAAATAGGGGCACGTACGTG
1 CAAATAGGGGCACGTATGTG
* * * * *
13992965 CAAACAGGGGTATC-AAAGTA
1 CAAATAGGGGCA-CGTATGTG
* *
13992985 CAAATAGGGGCGCGTATATG
1 CAAATAGGGGCACGTATGTG
* ** * *
13993005 CAAATAGGGGTACCAAAGTA
1 CAAATAGGGGCACGTATGTG
*
13993025 CAAACAGGGGCACGTATGTG
1 CAAATAGGGGCACGTATGTG
13993045 CAAA
1 CAAA
13993049 CATTCAACAA
Statistics
Matches: 95, Mismatches: 27, Indels: 4
0.75 0.21 0.03
Matches are distributed among these distances:
19 1 0.01
20 93 0.98
21 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.15
Consensus pattern (20 bp):
CAAATAGGGGCACGTATGTG
Found at i:13992955 original size:40 final size:39
Alignment explanation
Indices: 13992900--13993048 Score: 181
Period size: 40 Copynumber: 3.7 Consensus size: 39
13992890 CAGGGTACCG
* *
13992900 AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGCACGT
1 AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTAC-A
* * * * *
13992940 ACGTGCAAATAGGGGCACGTACGTGCAAACAGGGGTATCA
1 AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTA-CA
* * *
13992980 AAGTACAAATAGGGGCGCGTATATGCAAATAGGGGTACCA
1 AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTA-CA
13993020 AAGTACAAACAGGGGCACGTATGTGCAAA
1 AAGTACAAACAGGGGCACGTATGTGCAAA
13993049 CATTCAACAA
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 90 0.99
41 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.31, T:0.15
Consensus pattern (39 bp):
AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTACA
Found at i:13993008 original size:80 final size:80
Alignment explanation
Indices: 13992900--13993050 Score: 212
Period size: 80 Copynumber: 1.9 Consensus size: 80
13992890 CAGGGTACCG
* ** * * *
13992900 AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGCACGTACGTGCAAATAGGGGCACGTACGTG
1 AAGTACAAACAGGGGCACGTATATGCAAATAGGGGCACCAAAGTACAAACAGGGGCACGTACGTG
13992965 CAAACAGGGGTATCA
66 CAAACAGGGGTATCA
* * * *
13992980 AAGTACAAATAGGGGCGCGTATATGCAAATAGGGGTACCAAAGTACAAACAGGGGCACGTATGTG
1 AAGTACAAACAGGGGCACGTATATGCAAATAGGGGCACCAAAGTACAAACAGGGGCACGTACGTG
13993045 CAAACA
66 CAAACA
13993051 TTCAACAATT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 61 1.00
ACGTcount: A:0.36, C:0.18, G:0.30, T:0.15
Consensus pattern (80 bp):
AAGTACAAACAGGGGCACGTATATGCAAATAGGGGCACCAAAGTACAAACAGGGGCACGTACGTG
CAAACAGGGGTATCA
Found at i:13993029 original size:60 final size:60
Alignment explanation
Indices: 13992892--13993038 Score: 161
Period size: 60 Copynumber: 2.5 Consensus size: 60
13992882 AATGCATTCA
* * * * *
13992892 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAAATAGGGGCACGTACGTGCAAATAG
1 GGGTACCAAAGTACAAACAGGGGCACGAAAGTACAAATAGGGGCACGTACATGCAAATAG
* ** * * * * *
13992952 GGGCACGTACGTGCAAACAGGGGTATC-AAAGTACAAATAGGGGCGCGTATATGCAAATAG
1 GGGTACCAAAGTACAAACAGGGGCA-CGAAAGTACAAATAGGGGCACGTACATGCAAATAG
13993012 GGGTACCAAAGTACAAACAGGGGCACG
1 GGGTACCAAAGTACAAACAGGGGCACG
13993039 TATGTGCAAA
Statistics
Matches: 67, Mismatches: 18, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
59 1 0.01
60 65 0.97
61 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.33, T:0.14
Consensus pattern (60 bp):
GGGTACCAAAGTACAAACAGGGGCACGAAAGTACAAATAGGGGCACGTACATGCAAATAG
Found at i:13999445 original size:46 final size:46
Alignment explanation
Indices: 13999378--13999471 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
13999368 TTCAATTGGG
* *
13999378 TTTATCATCCATCTCAACATAACATATTTTCCATATAGCTCACCAT
1 TTTATCACCCATCTCAACATAACATATTTTACATATAGCTCACCAT
*
13999424 TTTATCACCCATCTCAACATAACATATTTTACATGTAGCTCACCAT
1 TTTATCACCCATCTCAACATAACATATTTTACATATAGCTCACCAT
13999470 TT
1 TT
13999472 CAAAGTCTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (46 bp):
TTTATCACCCATCTCAACATAACATATTTTACATATAGCTCACCAT
Found at i:14000494 original size:18 final size:18
Alignment explanation
Indices: 14000471--14000508 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
14000461 AAAAATCACT
14000471 TAACAA-AATACTTTTAAA
1 TAACAACAATA-TTTTAAA
14000489 TAACAACTAATATTTTAAA
1 TAACAAC-AATATTTTAAA
14000508 T
1 T
14000509 TCATCATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.37
Consensus pattern (18 bp):
TAACAACAATATTTTAAA
Found at i:14002622 original size:24 final size:24
Alignment explanation
Indices: 14002595--14002641 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
14002585 ATTATGAACT
*
14002595 TTTATTCATACCTTCATAAGTTTC
1 TTTATTCATACCCTCATAAGTTTC
*
14002619 TTTATTCATACCCTCATGAGTTT
1 TTTATTCATACCCTCATAAGTTT
14002642 ATACTCATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.06, T:0.49
Consensus pattern (24 bp):
TTTATTCATACCCTCATAAGTTTC
Found at i:14010862 original size:20 final size:20
Alignment explanation
Indices: 14010837--14010880 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
14010827 TACGTATGTG
14010837 CAAACAGGAGTACCAAAGTA
1 CAAACAGGAGTACCAAAGTA
**
14010857 CAAACAGGAGTACTGAAGTA
1 CAAACAGGAGTACCAAAGTA
14010877 CAAA
1 CAAA
14010881 TAGGGGCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.18, G:0.20, T:0.11
Consensus pattern (20 bp):
CAAACAGGAGTACCAAAGTA
Found at i:14010881 original size:60 final size:59
Alignment explanation
Indices: 14010802--14010925 Score: 144
Period size: 60 Copynumber: 2.1 Consensus size: 59
14010792 AAAATGCGTT
14010802 CAGGGTACCGAAGTACAAATA-AGG-ATACGTATGTGCAAACAGGAGTACCAAAGTACAAA
1 CAGGGTACCGAAGTACAAATAGAGGCATA--TATGTGCAAACAGGAGTACCAAAGTACAAA
* * * * * *
14010861 CAGGAGTACTGAAGTACAAATAGGGGCATATATGTGCAAATAGGGGTACCGAAGTATAAA
1 CAGG-GTACCGAAGTACAAATAGAGGCATATATGTGCAAACAGGAGTACCAAAGTACAAA
*
14010921 TAGGG
1 CAGGG
14010926 GCACTTATGT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
59 5 0.09
60 45 0.82
61 2 0.04
62 3 0.05
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18
Consensus pattern (59 bp):
CAGGGTACCGAAGTACAAATAGAGGCATATATGTGCAAACAGGAGTACCAAAGTACAAA
Found at i:14010926 original size:40 final size:40
Alignment explanation
Indices: 14010857--14010960 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
14010847 TACCAAAGTA
* *
14010857 CAAACAGGAGTACTGAAGTACAAATAGGGGCA-TATATGTG
1 CAAACAGGGGTACCGAAGTACAAATAGGGGCACT-TATGTG
* *
14010897 CAAATAGGGGTACCGAAGTATAAATAGGGGCACTTATGTG
1 CAAACAGGGGTACCGAAGTACAAATAGGGGCACTTATGTG
* * *
14010937 CTAACAGGGGTATCGAAGTGCAAA
1 CAAACAGGGGTACCGAAGTACAAA
14010961 CTAAGAAACC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.29, T:0.20
Consensus pattern (40 bp):
CAAACAGGGGTACCGAAGTACAAATAGGGGCACTTATGTG
Found at i:14013242 original size:21 final size:21
Alignment explanation
Indices: 14013203--14013248 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
14013193 AGTGTAAATC
*
14013203 GGGGCACGTATGCGCAATTTA
1 GGGGCACGTATGCGCAATTCA
* *
14013224 GGGGCACGTATGTGTAATTCA
1 GGGGCACGTATGCGCAATTCA
14013245 GGGG
1 GGGG
14013249 ATAATTAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.22, C:0.15, G:0.39, T:0.24
Consensus pattern (21 bp):
GGGGCACGTATGCGCAATTCA
Found at i:14017839 original size:18 final size:18
Alignment explanation
Indices: 14017816--14017855 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
14017806 TGTTGGAATG
14017816 AATGTTTAGATTTGGATA
1 AATGTTTAGATTTGGATA
14017834 AATGTTTAGATTTGGATA
1 AATGTTTAGATTTGGATA
14017852 AATG
1 AATG
14017856 GGATATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (18 bp):
AATGTTTAGATTTGGATA
Found at i:14017867 original size:19 final size:18
Alignment explanation
Indices: 14017822--14017867 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
14017812 AATGAATGTT
**
14017822 TAGATTTGGATAAATGTT
1 TAGATTTGGATAAATGGA
14017840 TAGATTTGGATAAATGGGA
1 TAGATTTGGATAAAT-GGA
*
14017859 TATATTTGG
1 TAGATTTGG
14017868 CATGTGATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (18 bp):
TAGATTTGGATAAATGGA
Found at i:14018730 original size:22 final size:22
Alignment explanation
Indices: 14018702--14018744 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
14018692 TTTATTGTTC
14018702 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTG
14018724 AAACATGAGAGCTTAGTACGT
1 AAACATGAGAGCTTAGTACGT
14018745 TAGCCACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTG
Found at i:14026191 original size:16 final size:16
Alignment explanation
Indices: 14026170--14026201 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14026160 GTTTTGTTGC
*
14026170 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
14026186 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
14026202 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:14032758 original size:51 final size:51
Alignment explanation
Indices: 14032700--14032890 Score: 221
Period size: 51 Copynumber: 3.8 Consensus size: 51
14032690 CCAGTTCACA
* *
14032700 TAGTAGCCTACACATAGTACTACACATGTGACCATCACTATCTGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGATACACG
* * * * * *
14032751 TAGTAGCCTGCACATAGTACTACACACGTGATCGA--AGCTACCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCTGATACACG
* *
14032802 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCT-AGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCTGA-TACACG
14032852 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
14032891 TTCACTTTCA
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
49 4 0.03
50 39 0.34
51 69 0.60
52 2 0.02
53 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGATACACG
Found at i:14032866 original size:101 final size:102
Alignment explanation
Indices: 14032698--14032882 Score: 313
Period size: 101 Copynumber: 1.8 Consensus size: 102
14032688 TACCAGTTCA
*
14032698 CATAGTAGCCTACACATAGTACTACACATGTGACCATCACTATCTGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATCTGATACACGTAGTAGCCTGCA
14032763 CATAGTACTACACACGTGATCGAAGCTACCCGGTACG
66 CATAGTACTACACACGTGATCGAAGCTACCCGGTACG
*
14032800 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCT-AGTACACGTAGTAGCCTG
1 CATAGTAGCCTACACATAGTACTACACATGCGACC-ATCACTATCTGA-TACACGTAGTAGCCTG
14032862 CACATAGTACTACACACGTGA
64 CACATAGTACTACACACGTGA
14032883 CCATCACTTT
Statistics
Matches: 79, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
100 1 0.01
101 40 0.51
102 34 0.43
103 4 0.05
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (102 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATCTGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAGCTACCCGGTACG
Found at i:14033133 original size:16 final size:16
Alignment explanation
Indices: 14033108--14033138 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14033098 ATCCAATCCA
14033108 AAAATCACATTTTTGT
1 AAAATCACATTTTTGT
*
14033124 AAAATTACATTTTTG
1 AAAATCACATTTTTG
14033139 CCCCTAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (16 bp):
AAAATCACATTTTTGT
Found at i:14039012 original size:11 final size:11
Alignment explanation
Indices: 14038996--14039020 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14038986 TTAATATTAA
14038996 AATATTAAAAT
1 AATATTAAAAT
14039007 AATATTAAAAT
1 AATATTAAAAT
14039018 AAT
1 AAT
14039021 CAAAACAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATATTAAAAT
Found at i:14040114 original size:3 final size:3
Alignment explanation
Indices: 14040106--14040147 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
14040096 CAAGAACAAA
14040106 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14040148 GAAAAGATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14040409 original size:19 final size:17
Alignment explanation
Indices: 14040378--14040412 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
14040368 TGTGAATTAT
14040378 AAAAAATAAAAAAATAA
1 AAAAAATAAAAAAATAA
14040395 AAAAAATATATAAAAATA
1 AAAAAATA-A-AAAAATA
14040413 CATATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 1 0.06
19 7 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (17 bp):
AAAAAATAAAAAAATAA
Found at i:14040560 original size:30 final size:31
Alignment explanation
Indices: 14040476--14040575 Score: 87
Period size: 30 Copynumber: 3.3 Consensus size: 31
14040466 AACATAGAAA
* *
14040476 ATATATAAAA-GTATGTGTATATATATATAT
1 ATATATAAAACGTATGTATGTATATATATAT
* * * * *
14040506 ATAAATTAAAACATGTGTACGTATATGTATAT
1 ATATA-TAAAACGTATGTATGTATATATATAT
* **
14040538 AT-TATAAAACGTATGTATGTATACATGCAT
1 ATATATAAAACGTATGTATGTATATATATAT
14040568 ATATATAA
1 ATATATAA
14040576 CAAATTTTGA
Statistics
Matches: 52, Mismatches: 15, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
30 25 0.48
31 11 0.21
32 16 0.31
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (31 bp):
ATATATAAAACGTATGTATGTATATATATAT
Found at i:14040854 original size:23 final size:23
Alignment explanation
Indices: 14040828--14040876 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
14040818 AAGAGATTTC
* *
14040828 AAATCAACAATATACAAATCAAT
1 AAATAAACAATACACAAATCAAT
**
14040851 AAATAAATTATACACAAATCAAT
1 AAATAAACAATACACAAATCAAT
14040874 AAA
1 AAA
14040877 ATAAGAACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.63, C:0.14, G:0.00, T:0.22
Consensus pattern (23 bp):
AAATAAACAATACACAAATCAAT
Found at i:14041106 original size:23 final size:22
Alignment explanation
Indices: 14041063--14041120 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
14041053 AAAAGATATC
* *
14041063 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
14041084 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
14041107 TGCATATCATATCT
1 TACAAATCATATCT
14041121 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14046234 original size:113 final size:114
Alignment explanation
Indices: 14046031--14046471 Score: 640
Period size: 114 Copynumber: 3.9 Consensus size: 114
14046021 AAAATAAGCA
* *
14046031 TTAGCGGCGTTTTTGAGAAAGCGCCGCCAAAAAACCTAAGCCCAACGACGTCG-TTTCTCGAGCT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT-GAGCT
* *
14046095 TTCGGGGATTTAGAGGCGTTTATAAGAAAGCGCCGCTAATGCTCAGGGCT
65 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
14046145 TTAGCGGCGTTTTTG-GGAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * *
14046209 TCGGGGATTTAGCGGCGTTTTTAAGAATGCGCCGCTAATGCTCGGGGTT
66 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
** * * * *
14046258 TTAGCGGTATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACTCCGTTTTTTAAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
14046323 TCGGGGATTTAGCGGCGTTTTTAAGGAAA-CGCCGCTAATGC-CTAGGGCT
66 TCGGGGATTTAGCGGCGTTTTTAA-GAAAGCGCCGCTAATGCTC-AGGGCT
* *
14046372 TTAGCGACGTTTTTGATAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
14046437 TCAGGGATTTAGCGGCGTTTTT-GGAAAAGCGCCGC
66 TCGGGGATTTAGCGGCGTTTTTAAG-AAAGCGCCGC
14046472 AAAAAAACCT
Statistics
Matches: 292, Mismatches: 29, Indels: 12
0.88 0.09 0.04
Matches are distributed among these distances:
112 1 0.00
113 100 0.34
114 188 0.64
115 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (114 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:14046450 original size:73 final size:72
Alignment explanation
Indices: 14046366--14046550 Score: 307
Period size: 73 Copynumber: 2.5 Consensus size: 72
14046356 GCTAATGCCT
* *
14046366 AGGGCTTTAGCGACGTTTTTGATAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGA-AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
14046431 GAGCTTTC
65 GAGCTTTC
14046439 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTT-GAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
14046504 GAGCTTTC
65 GAGCTTTC
* *
14046512 GGGGATTTAGCGGCGTTTTTTGAAAAGCGCCGCTAAAAA
1 AGGGATTTAGCGGCG-TTTTTGAAAAGCGCCGCAAAAAA
14046551 TATTTTATTT
Statistics
Matches: 106, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
73 99 0.93
74 7 0.07
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (72 bp):
AGGGATTTAGCGGCGTTTTTGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
AGCTTTC
Found at i:14047193 original size:22 final size:22
Alignment explanation
Indices: 14047165--14047208 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
14047155 GGGTTAGATG
14047165 TTAGGGGTTAGAGGTTAGGGGT
1 TTAGGGGTTAGAGGTTAGGGGT
*
14047187 TTAGGGGTTAGATGTTAGGGGT
1 TTAGGGGTTAGAGGTTAGGGGT
14047209 CGAGTTAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.00, G:0.48, T:0.34
Consensus pattern (22 bp):
TTAGGGGTTAGAGGTTAGGGGT
Found at i:14047208 original size:14 final size:14
Alignment explanation
Indices: 14047151--14047197 Score: 67
Period size: 14 Copynumber: 3.3 Consensus size: 14
14047141 NNNNNNNNNN
*
14047151 TTAGGGGTTAGATG
1 TTAGGGGTTAGAGG
14047165 TTAGGGGTTAGAGG
1 TTAGGGGTTAGAGG
*
14047179 TTAGGGGTTTAGGGG
1 TTAGGGG-TTAGAGG
14047194 TTAG
1 TTAG
14047198 ATGTTAGGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 20 0.67
15 10 0.33
ACGTcount: A:0.19, C:0.00, G:0.47, T:0.34
Consensus pattern (14 bp):
TTAGGGGTTAGAGG
Found at i:14052637 original size:50 final size:50
Alignment explanation
Indices: 14052571--14052701 Score: 154
Period size: 50 Copynumber: 2.6 Consensus size: 50
14052561 TTCTGTACTA
* * **
14052571 CCAATGCCATATCCCAGATATGGTCTTACATAGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATATCGGTG
* * *** *
14052621 CCCATGCCATGCCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATATCGGTG
* *
14052671 CCAACGCTATGTCCCAGACATGGTCTTACAT
1 CCAATGCCATGTCCCAGACATGGTCTTACAT
14052702 GGGATCTCAT
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 65 1.00
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATATCGGTG
Found at i:14053081 original size:30 final size:30
Alignment explanation
Indices: 14053047--14053104 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14053037 CCTTGACTCG
14053047 AACTTTGTAAAAATTACAATTTTGCCCCTA
1 AACTTTGTAAAAATTACAATTTTGCCCCTA
* * * *
14053077 AACTTTTTCATAATTACACTTTTGCCCC
1 AACTTTGTAAAAATTACAATTTTGCCCC
14053105 AAAGCTCGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTGTAAAAATTACAATTTTGCCCCTA
Found at i:14054886 original size:40 final size:40
Alignment explanation
Indices: 14054752--14054905 Score: 186
Period size: 40 Copynumber: 3.8 Consensus size: 40
14054742 AGCGGCATTT
**
14054752 TTAGCGGCGTTTGGATAAAAAACGCCGCTAAAAATCGAGCA
1 TTAGCGGCGTTT-TTTAAAAAACGCCGCTAAAAATCGAGCA
* * * *
14054793 TTAGCGGCGCTTTTCAAAAAATGCCGCTAAAGATCGAGCA
1 TTAGCGGCGTTTTTTAAAAAACGCCGCTAAAAATCGAGCA
*
14054833 TTAGCGGCG-TTTTTAAAAAAGCGCCGCTAAAAAT-AAGCA
1 TTAGCGGCGTTTTTTAAAAAA-CGCCGCTAAAAATCGAGCA
* *
14054872 TTAGCGGCGTTTTTTAGAAAAGCGCCGCAAAAAA
1 TTAGCGGCGTTTTTTA-AAAAACGCCGCTAAAAA
14054906 CCTAAGCCCA
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
39 23 0.23
40 60 0.61
41 15 0.15
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (40 bp):
TTAGCGGCGTTTTTTAAAAAACGCCGCTAAAAATCGAGCA
Found at i:14055001 original size:41 final size:41
Alignment explanation
Indices: 14054944--14055092 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
14054934 CTTTCGAGGA
* *
14054944 TTTAGCGGCGTTTTTGGAAAAGCGCCACTAATGTTCAGAGC
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGC
**
14054985 TTTAGCGTTGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGC
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGC
* * *
14055026 TTTAGCGGCGTTTTTTGAAAAGCGCCGCTAATGCTC-GGGA
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGC
*
14055066 TTTAACGGCGTTTTT-GAAAAGCGCCGC
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGC
14055093 AAAAACATTT
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 12 0.12
40 16 0.16
41 70 0.71
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGC
Found at i:14059540 original size:13 final size:13
Alignment explanation
Indices: 14059522--14059564 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
14059512 TTTTATTTTG
*
14059522 ATTTAAAATTAGA
1 ATTTAAAATTAAA
*
14059535 ATTTAAAAATAAA
1 ATTTAAAATTAAA
* *
14059548 ATTCAAAATTACA
1 ATTTAAAATTAAA
14059561 ATTT
1 ATTT
14059565 TGCATTAAGC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (13 bp):
ATTTAAAATTAAA
Found at i:14061078 original size:43 final size:43
Alignment explanation
Indices: 14061012--14061239 Score: 253
Period size: 43 Copynumber: 5.3 Consensus size: 43
14061002 CCAAAGGTCA
* * * * *
14061012 TTAGTGGCGTTTTTGGCAGAAGCGCCGCTAAAGGTCATGATCT
1 TTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGACCT
* * * * *
14061055 TTAGTGGCGTTTATGGGAAAAGCGCCGCTAAATGTCATGATCTT
1 TTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGA-CCT
** * *
14061099 TTAGCGGCGTTTGTAATAAAAGCGTCGCTAAAGGTCATGGCCT
1 TTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGACCT
* * **
14061142 TTAGCGGCGTTTGTGGAAAAAGCGCCGCGAAAGGTCATGGGCT
1 TTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGACCT
* *
14061185 TTAGCGGCGTTT-T-TTAAAAGCGCCGCTAAAAGTCATGACCT
1 TTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGACCT
14061226 TTAGCGGCGTTTGT
1 TTAGCGGCGTTTGT
14061240 TTCTAAAAAC
Statistics
Matches: 156, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
41 34 0.22
42 2 0.01
43 87 0.56
44 33 0.21
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGACCT
Found at i:14061163 original size:87 final size:84
Alignment explanation
Indices: 14061031--14061239 Score: 283
Period size: 87 Copynumber: 2.5 Consensus size: 84
14061021 TTTTTGGCAG
* * * * * * *
14061031 AAGCGCCGCTAAAGGTCATGATCTTTAGTGGCGTTTATGGGAAAAGCGCCGCTAAATGTCATGAT
1 AAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCGAAAGGTCATGAG
14061096 CTTTTAGCGGCGTTTGTAATAA
66 C-TTTAGCGGCGTTT-T-ATAA
* * *
14061118 AAGCGTCGCTAAAGGTCATGGCCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCGAAAGGTCATGGG
1 AAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCGAAAGGTCATGAG
*
14061183 CTTTAGCGGCGTTTTTTAA
66 CTTTAGCGGCGTTTTATAA
*
14061202 AAGCGCCGCTAAAAGTCATGACCTTTAGCGGCGTTTGT
1 AAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGT
14061240 TTCTAAAAAC
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
84 38 0.35
85 1 0.01
86 13 0.12
87 56 0.52
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (84 bp):
AAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCGAAAGGTCATGAG
CTTTAGCGGCGTTTTATAA
Found at i:14061187 original size:130 final size:120
Alignment explanation
Indices: 14060963--14061239 Score: 308
Period size: 130 Copynumber: 2.2 Consensus size: 120
14060953 TAAATTTTTT
* * * *
14060963 TAAAGTCATG-T-TTTTAGCGGCATTTGTGAAAAAGCGTCGCCAAAGGTCATTAGTGGCGTTTTT
1 TAAAGTCATGATCTTTTAGCGGCGTTTGTAAAAAAGCGTCGCCAAAGGTCATTAGCGGCGTTTGT
* * * * *
14061026 GGCAGAAGCGCCGCTAAAGGTCATGATCTTTAGTGGCGTTTATGGGAAAAGCGCCGC
66 GGAAAAAGCGCCGCGAAAGGTCATGAGCTTTAGCGGCGTTT-T-GGAAAAGCGCCGC
*
14061083 TAAATGTCATGATCTTTTAGCGGCGTTTGTAATAAAAGCGTCGCTAAAGGTCATGGCCTTTAGCG
1 TAAA-GTCATGATCTTTTAGCGGCGTTTGTAA-AAAAGCGTCGCCAAAGGTCA------TTAGCG
* **
14061148 GCGTTTGTGGAAAAAGCGCCGCGAAAGGTCATGGGCTTTAGCGGCGTTTTTTAAAAGCGCCGC
58 GCGTTTGTGGAAAAAGCGCCGCGAAAGGTCATGAGCTTTAGCGGCGTTTTGGAAAAGCGCCGC
*
14061211 TAAAAGTCATGA-CCTTTAGCGGCGTTTGT
1 T-AAAGTCATGATCTTTTAGCGGCGTTTGT
14061240 TTCTAAAAAC
Statistics
Matches: 132, Mismatches: 14, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
120 4 0.03
121 6 0.05
122 1 0.01
123 16 0.12
124 19 0.14
127 16 0.12
128 19 0.14
129 4 0.03
130 47 0.36
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (120 bp):
TAAAGTCATGATCTTTTAGCGGCGTTTGTAAAAAAGCGTCGCCAAAGGTCATTAGCGGCGTTTGT
GGAAAAAGCGCCGCGAAAGGTCATGAGCTTTAGCGGCGTTTTGGAAAAGCGCCGC
Found at i:14066015 original size:31 final size:31
Alignment explanation
Indices: 14065980--14066040 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
14065970 AACAACCTAG
14065980 TGACTTAAATAAAAATTTTCGAATAATTCAA
1 TGACTTAAATAAAAATTTTCGAATAATTCAA
* * *
14066011 TGACTTAAATAAAATTTTTTGAATAGTTCA
1 TGACTTAAATAAAAATTTTCGAATAATTCA
14066041 GTGGCCATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (31 bp):
TGACTTAAATAAAAATTTTCGAATAATTCAA
Found at i:14071833 original size:20 final size:20
Alignment explanation
Indices: 14071787--14071851 Score: 96
Period size: 20 Copynumber: 3.3 Consensus size: 20
14071777 CACATTAATG
14071787 CCCCTGTTTGTACTTC-GTA
1 CCCCTGTTTGTACTTCGGTA
14071806 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
* * *
14071826 CTCTTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTCGGTA
14071846 CCCCTG
1 CCCCTG
14071852 AATGCACATA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
19 16 0.40
20 24 0.60
ACGTcount: A:0.09, C:0.29, G:0.18, T:0.43
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:14071928 original size:80 final size:80
Alignment explanation
Indices: 14071826--14071989 Score: 247
Period size: 80 Copynumber: 2.0 Consensus size: 80
14071816 TACTTCGGTA
* * * *
14071826 CTCTTGTTTGTACTTTGGTACCCCTGAATGCACATACATGCTACTGTTTGTACTTCGGTACCTCT
1 CTCTTGCTTGTACTTCGATACCCCTGAATGCACATACATGCTACTGTTTGTACTTCGGTACCCCT
*
14071891 GAATGCACATACGTG
66 AAATGCACATACGTG
* *
14071906 CTCTTGCTTGTACTTCGATACCCCTGAATGCACATGCATGCTCCTGTTTGTACTTCGGTACCCCT
1 CTCTTGCTTGTACTTCGATACCCCTGAATGCACATACATGCTACTGTTTGTACTTCGGTACCCCT
**
14071971 AAATGCACATTTGTG
66 AAATGCACATACGTG
14071986 CTCT
1 CTCT
14071990 GAATGCACTT
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 75 1.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (80 bp):
CTCTTGCTTGTACTTCGATACCCCTGAATGCACATACATGCTACTGTTTGTACTTCGGTACCCCT
AAATGCACATACGTG
Found at i:14071988 original size:40 final size:40
Alignment explanation
Indices: 14071773--14071981 Score: 224
Period size: 40 Copynumber: 5.2 Consensus size: 40
14071763 ATGATATTGA
* *
14071773 AATGCACATTAATGCCCCTGTTTGTACTTC-GTACCCCTG
1 AATGCACATTCATGCTCCTGTTTGTACTTCGGTACCCCTG
** * * * * *
14071812 TTTGTAC-TTCGGTACTCTTGTTTGTACTTTGGTACCCCTG
1 AATGCACATTC-ATGCTCCTGTTTGTACTTCGGTACCCCTG
* * *
14071852 AATGCACATACATGCTACTGTTTGTACTTCGGTACCTCTG
1 AATGCACATTCATGCTCCTGTTTGTACTTCGGTACCCCTG
* * * * *
14071892 AATGCACATACGTGCTCTTGCTTGTACTTCGATACCCCTG
1 AATGCACATTCATGCTCCTGTTTGTACTTCGGTACCCCTG
* *
14071932 AATGCACATGCATGCTCCTGTTTGTACTTCGGTACCCCTA
1 AATGCACATTCATGCTCCTGTTTGTACTTCGGTACCCCTG
14071972 AATGCACATT
1 AATGCACATT
14071982 TGTGCTCTGA
Statistics
Matches: 135, Mismatches: 32, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
38 2 0.01
39 18 0.13
40 113 0.84
41 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (40 bp):
AATGCACATTCATGCTCCTGTTTGTACTTCGGTACCCCTG
Found at i:14073025 original size:19 final size:18
Alignment explanation
Indices: 14073001--14073046 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
14072991 GTGACCCATG
14073001 TTTCTCAAATTTTCATGTT
1 TTTCTCAAATTTTC-TGTT
*
14073020 TTTCTCCAATTTTCTGTT
1 TTTCTCAAATTTTCTGTT
14073038 TTATCTCAA
1 TT-TCTCAA
14073047 TTAGATCCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.20, C:0.20, G:0.04, T:0.57
Consensus pattern (18 bp):
TTTCTCAAATTTTCTGTT
Found at i:14079409 original size:40 final size:40
Alignment explanation
Indices: 14079365--14079449 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
14079355 TGCACAAACA
* *
14079365 TGCTCCTGTTTATTCTTCGGTACCCCTGAATACACATGCG
1 TGCTCCTGTTTATACTTCAGTACCCCTGAATACACATGCG
* * * * *
14079405 TGCTCCTGTTTGTACTTCAGTATCCTTGAATGCACATTCG
1 TGCTCCTGTTTATACTTCAGTACCCCTGAATACACATGCG
14079445 TGCTC
1 TGCTC
14079450 TAAATGCACT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.16, C:0.28, G:0.18, T:0.38
Consensus pattern (40 bp):
TGCTCCTGTTTATACTTCAGTACCCCTGAATACACATGCG
Found at i:14092402 original size:19 final size:19
Alignment explanation
Indices: 14092361--14092403 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
14092351 GACCCCTGTT
* *
14092361 TCTCAAATTTTCATGTTTT
1 TCTCAAATTATCATGTTTG
14092380 TCTCAAATTATC-TGTTTAG
1 TCTCAAATTATCATGTTT-G
14092399 TCTCA
1 TCTCA
14092404 GTTGGATCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.23, C:0.19, G:0.07, T:0.51
Consensus pattern (19 bp):
TCTCAAATTATCATGTTTG
Found at i:14096040 original size:25 final size:25
Alignment explanation
Indices: 14096012--14096060 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
14096002 TTTTCACGCC
14096012 AATTTTACCCCAGTAAAATTTTGAT
1 AATTTTACCCCAGTAAAATTTTGAT
*
14096037 AATTTTACCCCGGTAAAATTTTGA
1 AATTTTACCCCAGTAAAATTTTGA
14096061 AAAAATTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (25 bp):
AATTTTACCCCAGTAAAATTTTGAT
Found at i:14096240 original size:18 final size:18
Alignment explanation
Indices: 14096205--14096241 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14096195 TTCAAGAAGA
**
14096205 TCATTTCCATTTTTATTT
1 TCATTTCCATTTCCATTT
14096223 TCATTTCCATTTCCATTT
1 TCATTTCCATTTCCATTT
14096241 T
1 T
14096242 TGGAAACCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (18 bp):
TCATTTCCATTTCCATTT
Found at i:14101080 original size:104 final size:107
Alignment explanation
Indices: 14100895--14101153 Score: 431
Period size: 105 Copynumber: 2.5 Consensus size: 107
14100885 TGTATATAAA
** * *
14100895 AGGGGTTGCTGTGTGCTGATTCCCCGATTT-ATGGGTGGTGCTATGTGCG-TGATCCACCATATC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATGATCCACCATATC
*
14100958 TTTGAAATGTGAAA-GGGGGTTGCTATGTGCTGATTCCCCCG
66 TTTGAAATGTAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
14100999 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATGATCCACCATATC
14101063 TTTGAAATG-AAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
66 TTTGAAATGTAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
14101104 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGA
14101154 NNNNNNNNNN
Statistics
Matches: 147, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
104 54 0.37
105 92 0.63
106 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (107 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATGATCCACCATATC
TTTGAAATGTAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:14107989 original size:103 final size:104
Alignment explanation
Indices: 14107649--14108019 Score: 602
Period size: 105 Copynumber: 3.6 Consensus size: 104
14107639 TGTATATAAA
** * * * *
14107649 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTTGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
**
14107713 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
14107753 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
*
14107818 TTGAAATGAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
14107858 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
14107923 TGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* **
14107961 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
14108020 ATAACGGCTA
Statistics
Matches: 252, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
103 87 0.35
104 69 0.27
105 95 0.38
106 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:14114723 original size:16 final size:15
Alignment explanation
Indices: 14114698--14114728 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
14114688 TCTTTTTTCC
14114698 CTTTTTTTTTCTTTT
1 CTTTTTTTTTCTTTT
14114713 CTTTATTTTTTCTTTT
1 CTTT-TTTTTTCTTTT
14114729 TTATTCGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (15 bp):
CTTTTTTTTTCTTTT
Found at i:14117673 original size:15 final size:16
Alignment explanation
Indices: 14117646--14117675 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14117636 GATAATAATT
14117646 AATATATATTATATAA
1 AATATATATTATATAA
14117662 AATATA-ATTATATA
1 AATATATATTATATA
14117676 TTAGTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:14120972 original size:21 final size:21
Alignment explanation
Indices: 14120946--14120986 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
14120936 AGGTGATAAT
14120946 GATCATGTTTGATTTGCCTTC
1 GATCATGTTTGATTTGCCTTC
14120967 GATCATGTTTGATTTGCCTT
1 GATCATGTTTGATTTGCCTT
14120987 TGGTATGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.15, C:0.17, G:0.20, T:0.49
Consensus pattern (21 bp):
GATCATGTTTGATTTGCCTTC
Found at i:14122489 original size:15 final size:15
Alignment explanation
Indices: 14122466--14122499 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14122456 AAGGTAGTAC
14122466 AACAGAATAAAGCAA
1 AACAGAATAAAGCAA
* *
14122481 AACATAATAGAGCAA
1 AACAGAATAAAGCAA
14122496 AACA
1 AACA
14122500 AAACCAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.65, C:0.15, G:0.12, T:0.09
Consensus pattern (15 bp):
AACAGAATAAAGCAA
Found at i:14123599 original size:42 final size:42
Alignment explanation
Indices: 14123477--14123587 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
14123467 ACAGTGAGTT
* *
14123477 ACATAGCCTGAACACATGCCTATGTCCTTGTCTGTGTGGCTC
1 ACATAGCCTGAACACACGCCTATGTCCTTGTCAGTGTGGCTC
* * * * ** *
14123519 ACACAGCCTGACCACACGCATATGTGCTTACCAATGTGGCTC
1 ACATAGCCTGAACACACGCCTATGTCCTTGTCAGTGTGGCTC
**
14123561 ACATAGCCTGGGCACACGCCTATGTCC
1 ACATAGCCTGAACACACGCCTATGTCC
14123588 CTGGTCGTGT
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (42 bp):
ACATAGCCTGAACACACGCCTATGTCCTTGTCAGTGTGGCTC
Found at i:14139258 original size:169 final size:170
Alignment explanation
Indices: 14138931--14139271 Score: 576
Period size: 169 Copynumber: 2.0 Consensus size: 170
14138921 GGCGTGCAAG
* *
14138931 CTCTTTTTCAAGAGTGGAAATCAAAAAGGGAAGAATATAGTTGAAAGGCAACTAGAAGGGAGAAA
1 CTCTTTTTCAAGAGGGGAAATCAAAAAGGGAAGAATAGAGTTGAAAGGCAACTAGAAGGGAGAAA
*
14138996 GAGAGAAAATGTGAGAGAGAGATGTGTAAAGTGAGGGATGAGAAATAAGGGAGTGAAGGGGGCTT
66 GAGAGAAAATGT-AGAGAGAGATGTGTAAAGTGAAGGATGAGAAATAAGGGAGTGAAGGGGGCTT
14139061 TTTATGGGTGGAGATGGCTGCTAAAAGTAGCAGCCAATCCC
130 TTTATGGGTGGAGATGGCTGCTAAAAGTAGCAGCCAATCCC
* * * *
14139102 CTCTTTTTCAAGAGGGGAAATCGACAAGGGAAGAATGGAGTTGAAAGGCAATTAGAAGGGAGAAA
1 CTCTTTTTCAAGAGGGGAAATCAAAAAGGGAAGAATAGAGTTGAAAGGCAACTAGAAGGGAGAAA
*
14139167 TAGAGAAAATGT-GAGAGAGATGTGTAAAGTGAAGGATGAGAAATAAGGGAGTGAAGGGGGCTTT
66 GAGAGAAAATGTAGAGAGAGATGTGTAAAGTGAAGGATGAGAAATAAGGGAGTGAAGGGGGCTTT
* *
14139231 TTATTGGTGGAGATGGCTTCTAAAAGTAGCAGCCAATCCC
131 TTATGGGTGGAGATGGCTGCTAAAAGTAGCAGCCAATCCC
14139271 C
1 C
14139272 CTTCCTTTGG
Statistics
Matches: 160, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
169 90 0.56
171 70 0.44
ACGTcount: A:0.37, C:0.09, G:0.33, T:0.21
Consensus pattern (170 bp):
CTCTTTTTCAAGAGGGGAAATCAAAAAGGGAAGAATAGAGTTGAAAGGCAACTAGAAGGGAGAAA
GAGAGAAAATGTAGAGAGAGATGTGTAAAGTGAAGGATGAGAAATAAGGGAGTGAAGGGGGCTTT
TTATGGGTGGAGATGGCTGCTAAAAGTAGCAGCCAATCCC
Found at i:14150498 original size:51 final size:51
Alignment explanation
Indices: 14150417--14150517 Score: 157
Period size: 51 Copynumber: 2.0 Consensus size: 51
14150407 GAGCAGACTG
* *
14150417 AAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTA
1 AAGGCAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTA
* * *
14150468 AAGGTAGCGAATCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAGCT
1 AAGGCAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCT
14150518 GAAGTAGAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (51 bp):
AAGGCAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTA
Found at i:14150616 original size:123 final size:122
Alignment explanation
Indices: 14150414--14150844 Score: 466
Period size: 123 Copynumber: 3.4 Consensus size: 122
14150404 GTGGAGCAGA
* * * *
14150414 CTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
1 CTGAAGACAGCGAATCCTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
*
14150479 TCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAGCTGAAGTAGAGAGGATTAAAG
66 TCTTGTTT-CCTAGCATTGCAGTGGAATAGATTAAAGCTGAAGTAGAGAGGATTAAAG
* * * *
14150537 CTAAAGACATCGAATCCTATCTCCTTGGCATTACAGTGGAACAGATTAAAGCTAAAGGTAGCAAA
1 CTGAAGACAGCGAATCCTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
** * * * *
14150602 TCTTGTTTCTCTAGCATTGCAGCAGAGTAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGA
66 TCTTGTTTC-CTAGCATTGCAGTGGAATAGATTAAAGCTGAA-GTA--G-A---GA------GGA
14150667 CGTTAAAG
117 --TTAAAG
* * * * *
14150675 CTGAAGACAGCGAATCTTATTTCCCTGGCTTTACAGTGGAACAGATTAAAGCTAAAGGTAACGAA
1 CTGAAGACAGCGAATCCTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * * *
14150740 TCTTGTTTCCTTGGCATTGTAGTGGAATAGATTAAAGCTGAAGTTGAGCGGATTAAAG
66 TCTTGTTTCC-TAGCATTGCAGTGGAATAGATTAAAGCTGAAGTAGAGAGGATTAAAG
* *
14150798 CTGAAGGCAGCGAATCCTATCTCATTGGCGTTACAGTGGAACAGATT
1 CTGAAGACAGCGAATCCTATCTCCTTGGCGTTACAGTGGAACAGATT
14150845 GAAGTCATTA
Statistics
Matches: 252, Mismatches: 39, Indels: 34
0.78 0.12 0.10
Matches are distributed among these distances:
122 1 0.00
123 140 0.56
124 2 0.01
125 2 0.01
126 1 0.00
127 1 0.00
130 1 0.00
134 1 0.00
135 1 0.00
136 2 0.01
137 2 0.01
138 98 0.39
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (122 bp):
CTGAAGACAGCGAATCCTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
TCTTGTTTCCTAGCATTGCAGTGGAATAGATTAAAGCTGAAGTAGAGAGGATTAAAG
Found at i:14150680 original size:36 final size:36
Alignment explanation
Indices: 14150633--14150701 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
14150623 GCAGAGTAGA
*
14150633 TTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGACG
1 TTAAAGCTGAAGACAGCGAATCTTATCTCCCTGACG
*
14150669 TTAAAGCTGAAGACAGCGAATCTTATTTCCCTG
1 TTAAAGCTGAAGACAGCGAATCTTATCTCCCTG
14150702 GCTTTACAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (36 bp):
TTAAAGCTGAAGACAGCGAATCTTATCTCCCTGACG
Found at i:14150779 original size:138 final size:138
Alignment explanation
Indices: 14150531--14150782 Score: 371
Period size: 138 Copynumber: 1.8 Consensus size: 138
14150521 GTAGAGAGGA
* *
14150531 TTAAAGCTAAAGACATCGAATCCTATCTCCTTGGCATTACAGTGGAACAGATTAAAGCTAAAGGT
1 TTAAAGCTAAAGACAGCGAATCCTATCTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAGGT
* *
14150596 AGCAAATCTTGTTTCTCTAGCATTGCAGCAGAGTAGATTAAAGCTGAAGGCAGCGAATCTTATCT
66 AACAAATCTTGTTTCTCTAGCATTGCAGCAGAATAGATTAAAGCTGAAGGCAGCGAATCTTATCT
14150661 CCCTGACG
131 CCCTGACG
* * * *
14150669 TTAAAGCTGAAGACAGCGAATCTTATTTCCCTGGCTTTACAGTGGAACAGATTAAAGCTAAAGGT
1 TTAAAGCTAAAGACAGCGAATCCTATCTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAGGT
* * * **
14150734 AACGAATCTTGTTTC-CTTGGCATTGTAGTGGAATAGATTAAAGCTGAAG
66 AACAAATCTTGTTTCTC-TAGCATTGCAGCAGAATAGATTAAAGCTGAAG
14150783 TTGAGCGGAT
Statistics
Matches: 100, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
137 1 0.01
138 99 0.99
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (138 bp):
TTAAAGCTAAAGACAGCGAATCCTATCTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAGGT
AACAAATCTTGTTTCTCTAGCATTGCAGCAGAATAGATTAAAGCTGAAGGCAGCGAATCTTATCT
CCCTGACG
Found at i:14150953 original size:89 final size:88
Alignment explanation
Indices: 14150854--14151381 Score: 437
Period size: 96 Copynumber: 5.8 Consensus size: 88
14150844 TGAAGTCATT
* * *
14150854 AGTCTTATCTCCCTGTAGTTGCAATGGAGCAGGCTGAACATAGCAAATCTTATCTCTCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATA-CAAATCTTATCTCTCTGAAGTT
14150919 GCAGTAGAGTAGATTAAAGCTATA
65 GCAGTAGAGTAGATTAAAGCTATA
* *
14150943 AGTCTTATCTCCCTGAAGTTGCAGTAGAACAGGCTGAAGATAACAAATCTTATCTCTCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGAT-ACAAATCTTATCTCTCTGAAGTT
* *
14151008 TCACTAGAGTAGATTAAAGCTATA
65 GCAGTAGAGTAGATTAAAGCTATA
* * * * * *
14151032 AATCTTATCTCCCTAAAGTTGCAGTGGGGCAGGTTGAAGACACAAGTCTTATCTC-CATGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATACAAATCTTATCTCTC-TGAAGTT
* * * * * **
14151096 CCAGTGGAGCAGATTGAAGTTGCA
65 GCAGTAGAGTAGATTAAAGCTATA
* * * *
14151120 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATA-CAAATCTTATCTCTCTGAAGTT
* ** * *
14151185 GCAGTGGAACAAATTGAAGCTATAAATTA
65 GCAGTAGAGTAGATTAAAGC--T--A-TA
* * ** * * *
14151214 CAGATCTCATCTCTCTGAAGTTGCAGTGGAGCATACTGAAGATATCAAATCTTATTTCCCTAAAG
1 -AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATA-CAAATCTTATCTCTCTGAAG
* ** * *
14151279 TTGCAGTGGAACAAATTGAAGCTATAAATTA
63 TTGCAGTAGAGTAGATTAAAGC--T--A-TA
* * * * * * *
14151310 CAGATCTCATCTCTCTGAAGTTGCAGTGGAACAGACTGAAGATATCAAATCTAATTTCCCTGAAG
1 -AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATA-CAAATCTTATCTCTCTGAAG
14151375 TTGCAGT
63 TTGCAGT
14151382 GGAACAAATT
Statistics
Matches: 383, Mismatches: 45, Indels: 15
0.86 0.10 0.03
Matches are distributed among these distances:
87 1 0.00
88 72 0.19
89 147 0.38
90 2 0.01
91 1 0.00
94 1 0.00
95 2 0.01
96 157 0.41
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (88 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATACAAATCTTATCTCTCTGAAGTTG
CAGTAGAGTAGATTAAAGCTATA
Found at i:14151190 original size:133 final size:132
Alignment explanation
Indices: 14150831--14151206 Score: 380
Period size: 133 Copynumber: 2.8 Consensus size: 132
14150821 ATTGGCGTTA
* * *
14150831 CAGTGGAACAGATTGAAG-TCATTAGTCTTATCTCCCTGTAGTTGCAATGGAGCAGGCTGAACAT
1 CAGTGGAACAGATTGAAGTTCA--AGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGAT
* * * * * * *
14150895 AGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAGTCTTATCTCCCTGAA
64 ATCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAGTCTTATCTCCATGAA
*
14150960 GTTG
129 GTTC
* ** * * * * * * * * * *
14150964 CAGTAGAACAGGCTGAAGATAACAAATCTTATCTCTCTGAAGTTTCACTAGAGTAGATTAAAGCT
1 CAGTGGAACAGATTGAAG-T-TCAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGAT
* * *
14151029 AT-AAATCTTATCTCCCTAAAGTTGCAGTGGGGCAGGTTGAAGAC-ACAAGTCTTATCTCCATGA
64 ATCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-CTACAAGTCTTATCTCCATGA
14151092 AGTTC
128 AGTTC
* *
14151097 CAGTGGAGCAGATTGAAGTTGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA
1 CAGTGGAACAGATTGAAGTT-CAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATA
* * * *
14151162 TCAAATCTTATTTCCCTAAAGTTGCAGTGGAACAAATTGAAGCTA
65 TCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTA
14151207 TAAATTACAG
Statistics
Matches: 190, Mismatches: 46, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
132 38 0.20
133 119 0.63
134 31 0.16
136 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (132 bp):
CAGTGGAACAGATTGAAGTTCAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAT
CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAGTCTTATCTCCATGAAGT
TC
Found at i:14151203 original size:45 final size:45
Alignment explanation
Indices: 14150831--14151509 Score: 437
Period size: 45 Copynumber: 14.9 Consensus size: 45
14150821 ATTGGCGTTA
* * *
14150831 CAGTGGAACAGATTGAAG-TCAT-TAGTCTTATCTCCCTGTAGTTG
1 CAGTGGAACAGATTGAAGAT-ATCAAATCTTATCTCCCTGAAGTTG
* * ** * * *
14150875 CAATGGAGCAGGCTGAACATAGCAAATCTTATCTCTCTGAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* ** * * *
14150920 CAGTAGAGTAGATTAAAGCTAT-AAGTCTTATCTCCCTGAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* ** * * *
14150964 CAGTAGAACAGGCTGAAGATAACAAATCTTATCTCTCTGAAGTTT
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* * ** * * *
14151009 CACTAGAGTAGATTAAAGCTAT-AAATCTTATCTCCCTAAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
** * * * * *
14151053 CAGTGGGGCAGGTTGAAGACA-CAAGTCTTATCTCCATGAAGTTC
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* *
14151097 CAGTGGAGCAGATTGAAG-T-TGCAAGTCTTATCTCCCTGAAGTTG
1 CAGTGGAACAGATTGAAGATAT-CAAATCTTATCTCCCTGAAGTTG
* * * *
14151141 CAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* * * *
14151186 CAGTGGAACAAATTGAAGCTATAAATTACAGATCTCATCTCTCTGAAGTTG
1 CAGTGGAACAGATTGAAG--AT--A-T-CAAATCTTATCTCCCTGAAGTTG
* * * * *
14151237 CAGTGGAGCATACTGAAGATATCAAATCTTATTTCCCTAAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* * * *
14151282 CAGTGGAACAAATTGAAGCTATAAATTACAGATCTCATCTCTCTGAAGTTG
1 CAGTGGAACAGATTGAAG--AT--A-T-CAAATCTTATCTCCCTGAAGTTG
* * *
14151333 CAGTGGAACAGACTGAAGATATCAAATCTAATTTCCCTGAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* * * *
14151378 CAGTGGAACAAATTGAAGCTATAAATTACAGATCTCATCTCTCTGAAGTTG
1 CAGTGGAACAGATTGAAG--AT--A-T-CAAATCTTATCTCCCTGAAGTTG
* * * * * * *
14151429 CAGTAGAGCAGA-T---CATATCAAACCCTATTTCCCTAAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* * * *
14151470 CAGTGGAACAGGTTAAAGTTA-CAAGTCTTATCTCCCTGAA
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAA
14151510 ATTCTAGTCG
Statistics
Matches: 485, Mismatches: 120, Indels: 60
0.73 0.18 0.09
Matches are distributed among these distances:
41 25 0.05
42 2 0.00
43 1 0.00
44 167 0.34
45 173 0.36
46 3 0.01
47 8 0.02
49 7 0.01
50 4 0.01
51 95 0.20
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (45 bp):
CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
Found at i:14151252 original size:96 final size:96
Alignment explanation
Indices: 14151126--14151479 Score: 599
Period size: 96 Copynumber: 3.7 Consensus size: 96
14151116 TGCAAGTCTT
*
14151126 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
14151191 GAACAAATTGAAGCTATAAATTACAGATCTC
66 GAACAAATTGAAGCTATAAATTACAGATCTC
*
14151222 ATCTCTCTGAAGTTGCAGTGGAGCATACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
14151287 GAACAAATTGAAGCTATAAATTACAGATCTC
66 GAACAAATTGAAGCTATAAATTACAGATCTC
* * *
14151318 ATCTCTCTGAAGTTGCAGTGGAACAGACTGAAGATATCAAATCTAATTTCCCTGAAGTTGCAGTG
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
14151383 GAACAAATTGAAGCTATAAATTACAGATCTC
66 GAACAAATTGAAGCTATAAATTACAGATCTC
* * * *
14151414 ATCTCTCTGAAGTTGCAGTAGAGCAGA-T---CATATCAAACCCTATTTCCCTAAAGTTGCAGTG
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
14151475 GAACA
66 GAACA
14151480 GGTTAAAGTT
Statistics
Matches: 245, Mismatches: 13, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
92 33 0.13
95 1 0.00
96 211 0.86
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (96 bp):
ATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
GAACAAATTGAAGCTATAAATTACAGATCTC
Found at i:14153087 original size:3 final size:3
Alignment explanation
Indices: 14153079--14153191 Score: 61
Period size: 3 Copynumber: 38.3 Consensus size: 3
14153069 TCATTTCTAG
* * * * ** *
14153079 TAT TAT TAT TAC TAA TAT TAT TAT CAC CCT T-T TAT TTAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
* * * * * * *
14153124 TAT TAT TAG CAT TGT T-T TAT TAT TAA TAT TGT TAG TAT TAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
14153171 TAT TTT TAT TAT TA- TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
14153192 GTTTTTGCTA
Statistics
Matches: 81, Mismatches: 25, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
2 6 0.07
3 72 0.89
4 3 0.04
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:14157355 original size:42 final size:42
Alignment explanation
Indices: 14157308--14157391 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
14157298 AAACCAAGAG
14157308 ATACAATTATCATTCATCACTCAATAATTATTTTCCAACAAT
1 ATACAATTATCATTCATCACTCAATAATTATTTTCCAACAAT
* *
14157350 ATACAATTGTCATTCTTCACTCAATAATTATTTTCCAACAAT
1 ATACAATTATCATTCATCACTCAATAATTATTTTCCAACAAT
14157392 GGTTCTTCTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.38, C:0.21, G:0.01, T:0.39
Consensus pattern (42 bp):
ATACAATTATCATTCATCACTCAATAATTATTTTCCAACAAT
Found at i:14159397 original size:9 final size:9
Alignment explanation
Indices: 14159383--14159424 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
14159373 TTACATAAAC
14159383 TTATAAATA
1 TTATAAATA
14159392 TTATAAATA
1 TTATAAATA
*
14159401 -TATAAGTA
1 TTATAAATA
14159409 TTATAAATA
1 TTATAAATA
14159418 TTATAAA
1 TTATAAA
14159425 AATATCTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.23
9 23 0.77
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (9 bp):
TTATAAATA
Found at i:14159404 original size:17 final size:18
Alignment explanation
Indices: 14159383--14159424 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
14159373 TTACATAAAC
14159383 TTATAAATATTATAAATA
1 TTATAAATATTATAAATA
*
14159401 -TATAAGTATTATAAATA
1 TTATAAATATTATAAATA
14159418 TTATAAA
1 TTATAAA
14159425 AATATCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
TTATAAATATTATAAATA
Found at i:14159498 original size:21 final size:21
Alignment explanation
Indices: 14159468--14159507 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14159458 TATTAGAAAA
* *
14159468 ATATTTAAATTTTATAAAAGT
1 ATATTAAAATTCTATAAAAGT
14159489 ATATTAAAATTCTATAAAA
1 ATATTAAAATTCTATAAAA
14159508 ACCATTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (21 bp):
ATATTAAAATTCTATAAAAGT
Found at i:14159528 original size:31 final size:32
Alignment explanation
Indices: 14159493--14159553 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
14159483 AAAAGTATAT
* * *
14159493 TAAAATTCTATAAAAACCATT-AAAATTGATA
1 TAAAATTATAAAAAAACCATAAAAAATTGATA
*
14159524 TAAAATTATAAAAAAATCATAAAAAATTGA
1 TAAAATTATAAAAAAACCATAAAAAATTGA
14159554 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 17 0.68
32 8 0.32
ACGTcount: A:0.61, C:0.07, G:0.03, T:0.30
Consensus pattern (32 bp):
TAAAATTATAAAAAAACCATAAAAAATTGATA
Found at i:14159948 original size:10 final size:10
Alignment explanation
Indices: 14159933--14159985 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
14159923 TCAGCTCAAG
*
14159933 TTTTTATGAT
1 TTTTTATAAT
14159943 TTTTTATAAT
1 TTTTTATAAT
* *
14159953 TTTATAT-TT
1 TTTTTATAAT
14159962 ATTTTTATAAT
1 -TTTTTATAAT
*
14159973 TTTTTATTAT
1 TTTTTATAAT
14159983 TTT
1 TTT
14159986 AAGAATTCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
9 1 0.03
10 33 0.94
11 1 0.03
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:14159968 original size:20 final size:19
Alignment explanation
Indices: 14159943--14159985 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
14159933 TTTTTATGAT
14159943 TTTTTATAATTTTATATTTA
1 TTTTTATAATTTTATA-TTA
*
14159963 TTTTTATAATTTTTTATTA
1 TTTTTATAATTTTATATTA
14159982 TTTT
1 TTTT
14159986 AAGAATTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTTATAATTTTATATTA
Found at i:14159992 original size:19 final size:20
Alignment explanation
Indices: 14159950--14159992 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
14159940 GATTTTTTAT
* *
14159950 AATTTTATATTTATTTTTAT
1 AATTTTATATTTATTTTAAG
*
14159970 AATTTTTTA-TTATTTTAAG
1 AATTTTATATTTATTTTAAG
14159989 AATT
1 AATT
14159993 CTAATACTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
AATTTTATATTTATTTTAAG
Found at i:14160681 original size:8 final size:8
Alignment explanation
Indices: 14160668--14160698 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
14160658 AATTTTAAAA
14160668 TATTTTTT
1 TATTTTTT
14160676 TATTTTTT
1 TATTTTTT
14160684 TATTTTTT
1 TATTTTTT
14160692 TATTTTT
1 TATTTTT
14160699 AAAATAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
TATTTTTT
Found at i:14164234 original size:221 final size:219
Alignment explanation
Indices: 14163950--14164388 Score: 772
Period size: 221 Copynumber: 2.0 Consensus size: 219
14163940 AATGGGTCCG
*
14163950 GGAGTCAGTTACGTACGAAAAAGGGTTAGCCCCCTCGTAACGCCCAAAATTGATACCTAATTGAT
1 GGAGTCAGTTACATACGAAAAAGGGTTAGCCCCCTCGTAACGCCCAAAATTGATACCTAATTGAT
14164015 TATTTAATGTCTTAAGGTCGAATGTAGAAAAAAGATTGAAAAGTGA-TTCCCCTTTTTAAAAATA
66 TATTTAATGTCTTAAGGTCGAATGTAGAAAAAAGATTGAAAAGTGATTTCCCC-TTTTAAAAATA
* *
14164079 TTTATTGACATTTTTATTATTTCGCAAACTAAAAAAATGGTCATTTTGCTTCGATGAGATGAGGA
130 TTTATTGACA--TTTATTATTTCGCAAACTAAAAAAAGGGTCATTTTGCTTCGATGAGATGAGAA
*
14164144 AATCGAAACCCTATAAGTTAGGGTACT
193 AATCGAAACCCCATAAGTTAGGGTACT
* *
14164171 GGAGTCAGTTACATACGAAGAAGGGTTAGCCCCCTCGTAACGCCCAAAATTGGTACCTAATTGAT
1 GGAGTCAGTTACATACGAAAAAGGGTTAGCCCCCTCGTAACGCCCAAAATTGATACCTAATTGAT
14164236 TATTTAATGTCTTAAGGTCGAATGTAGAAAAAAGATTGAAAAGTGATTTCCCCTTTTAAAAATAT
66 TATTTAATGTCTTAAGGTCGAATGTAGAAAAAAGATTGAAAAGTGATTTCCCCTTTTAAAAATAT
*
14164301 TTATTGACATTTATTATTTTGCAAACTAAAAAAAGGGTCATTTTGCTTCGATGAGATGAGAAAAT
131 TTATTGACATTTATTATTTCGCAAACTAAAAAAAGGGTCATTTTGCTTCGATGAGATGAGAAAAT
*
14164366 CGAAACCCCGTAAGTTAGGGTAC
196 CGAAACCCCATAAGTTAGGGTAC
14164389 GATCTTTTGA
Statistics
Matches: 209, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
219 74 0.35
221 129 0.62
222 6 0.03
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (219 bp):
GGAGTCAGTTACATACGAAAAAGGGTTAGCCCCCTCGTAACGCCCAAAATTGATACCTAATTGAT
TATTTAATGTCTTAAGGTCGAATGTAGAAAAAAGATTGAAAAGTGATTTCCCCTTTTAAAAATAT
TTATTGACATTTATTATTTCGCAAACTAAAAAAAGGGTCATTTTGCTTCGATGAGATGAGAAAAT
CGAAACCCCATAAGTTAGGGTACT
Found at i:14165432 original size:3 final size:3
Alignment explanation
Indices: 14165426--14165477 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
14165416 AAAAAAAACC
* * *
14165426 AAT AAT AAT AGT AAT AAT ACT AAT AAC AAT AAT AAT AAT AAAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
14165471 AAT AAT A
1 AAT AAT A
14165478 TTAAACTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 36 0.88
4 3 0.07
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:14165466 original size:15 final size:14
Alignment explanation
Indices: 14165426--14165498 Score: 58
Period size: 15 Copynumber: 5.1 Consensus size: 14
14165416 AAAAAAAACC
*
14165426 AATAATAATAGTAAT
1 AATAATAATA-AAAT
*
14165441 AATACTAATAACAAT
1 AATAATAATAA-AAT
*
14165456 AATAATAATAAATAA
1 AATAATAATAAA-AT
* *
14165471 AATAATATTAAACT
1 AATAATAATAAAAT
*
14165485 AA-AAAAATAAAAT
1 AATAATAATAAAAT
14165498 A
1 A
14165499 GCACAAATAA
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
13 9 0.20
14 3 0.07
15 34 0.74
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.27
Consensus pattern (14 bp):
AATAATAATAAAAT
Found at i:14166171 original size:6 final size:6
Alignment explanation
Indices: 14166160--14166232 Score: 119
Period size: 6 Copynumber: 12.2 Consensus size: 6
14166150 AAAAGGGTAT
*
14166160 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAT AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* *
14166208 AATAAT AATAAA AATAAT AATAAA A
1 AATAAA AATAAA AATAAA AATAAA A
14166233 GATTAAAATG
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
AATAAA
Found at i:14166192 original size:24 final size:24
Alignment explanation
Indices: 14166160--14166241 Score: 128
Period size: 24 Copynumber: 3.4 Consensus size: 24
14166150 AAAAGGGTAT
*
14166160 AATAAAAATAAAAATAAAAATAAA
1 AATAAAAATAAAAATAATAATAAA
14166184 AATAAAAATAAAAATAATAATAAA
1 AATAAAAATAAAAATAATAATAAA
*
14166208 AATAATAATAAAAATAATAATAAA
1 AATAAAAATAAAAATAATAATAAA
*
14166232 AGATTAAAAT
1 A-ATAAAAAT
14166242 GAAAGTAGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 47 0.89
25 6 0.11
ACGTcount: A:0.77, C:0.00, G:0.01, T:0.22
Consensus pattern (24 bp):
AATAAAAATAAAAATAATAATAAA
Found at i:14167188 original size:89 final size:90
Alignment explanation
Indices: 14167093--14168243 Score: 952
Period size: 89 Copynumber: 12.9 Consensus size: 90
14167083 CTTCAACCTA
* * * * * * * *
14167093 CTCCACTGCGAACTCAGAGAGGTAAGACTAGTGTT-GTCGATCTGCTTCGTTGCCAGTACAGAAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
* *
14167157 GACAAGATCTGTTGTTTTTAGTCTG
66 GGCAAGATCTGCTGTTTTTAGTCTG
* * *
14167182 TTCCACTGCAAACTCAGGGAGGCAAGACTGGTGTTCTTCGATTTGCTTCGCTGCCAATACA-AGA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGA-A
* * *
14167246 AGGCAAGATATGCTATTTTCAGTCTG
65 AGGCAAGATCTGCTGTTTTTAGTCTG
** * *
14167272 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTT-TTTAATCTGCTTCGCTGCCAATATAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
14167336 GGCAAGATCTGCTGTTTTTAGTCTG
66 GGCAAGATCTGCTGTTTTTAGTCTG
* * *
14167361 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTACTTCGCTACCAATACAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
* * *
14167426 TGCAAGATCTGCTATTTTCAGTCTG
66 GGCAAGATCTGCTGTTTTTAGTCTG
* * * * * *
14167451 CTTCGCTGCAAACTCAGGGAGGCAATGCTGGTGTT-TTCAATCTGCTTCGCTACCAATACAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
*
14167515 GGCAAGATCTGTTGTTTTTAGTCTG
66 GGCAAGATCTGCTGTTTTTAGTCTG
* * *
14167540 CTCTACTGCAAACTCAAGGAGGCAAGGCTGGTGTTCGTCGATCTGCTTCGCTGCCAATACA-AGA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGA-A
* *
14167604 AGGCAAGATCTGCTATTTTCAGTCTG
65 AGGCAAGATCTGCTGTTTTTAGTCTG
* * * * *
14167630 CTCCGCTGCAAACTCAAGGAGGCAAGGCTAGTGTT-TTCAATCTGCTTCGCTGCCAATACAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
*
14167694 GGCAAGATCTGTTGTTTTTAGTCTG
66 GGCAAGATCTGCTGTTTTTAGTCTG
* * *
14167719 CTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTTCGTCGATCTGCTTCGCTCCCAATACA-AGA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGA-A
** * * ** *
14167783 AGGCAAGATCTAATATTTTCAACCTA
65 AGGCAAGATCTGCTGTTTTTAGTCTG
* ** ** * * * *
14167809 CTCTACTGC-TGCTCAGGGAGATAAGGCTTGCTG-TCTTCAATCTACTTCGCTGCCAATACAGGA
1 CTCCACTGCAAACTCAGGGAGGCAAGGC-TGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAA
* * * * * * * *
14167872 AGACAAGTTCTGTTATTTTCAATATA
65 AGGCAAGATCTGCTGTTTTTAGTCTG
** * * ** * * *
14167898 CTCCACTGC-TGCCCAGAGAGATAAGGCTGG-GGTCTTCGATCTACTTCGCTGCCAATACAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
* * * * * ** *
14167961 GACAATATCTACTATTTTCAACCTA
66 GGCAAGATCTGCTGTTTTTAGTCTG
* ** ** * *
14167986 CTTCACTGC-TGCTCAGGGAGATAAGGCT--TGCTATCTTCGATCTACTTCGCTGCCAATACAGG
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTG-T-TCTTCGATCTGCTTCGCTGCCAATACAGA
* * * * ** *
14168048 AAGACAAGGTCTGCTATTTTCAACCTA
64 AAGGCAAGATCTGCTGTTTTTAGTCTG
* ** ** * * * * * *
14168075 CTCCACTAC-TGCTCAGGGAGATAAGGCCGG-GGTCTTCAATCTACTTCGCTGTCAATACAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
* * * ** *
14168138 GACAAGGTCTGCTATTTTTAACCTA
66 GGCAAGATCTGCTGTTTTTAGTCTG
* ** ** * * * *
14168163 CTCCACTAC-TGCTCAGGGAGATAAGGCTGG-GGTCTTCGATCTACTTCGCTGCCAATATAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
* *
14168226 GACAAGATCTGCTATTTT
66 GGCAAGATCTGCTGTTTT
14168244 CAACCTACTT
Statistics
Matches: 922, Mismatches: 123, Indels: 35
0.85 0.11 0.03
Matches are distributed among these distances:
87 2 0.00
88 205 0.22
89 429 0.47
90 286 0.31
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (90 bp):
CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
GGCAAGATCTGCTGTTTTTAGTCTG
Found at i:14167394 original size:179 final size:178
Alignment explanation
Indices: 14167084--14168346 Score: 1217
Period size: 179 Copynumber: 7.1 Consensus size: 178
14167074 ATCTATAATC
* * * * * * *
14167084 TTCAACCTACTCCACTGCGAACTCAGAGAGGTAAGACTAGTGTTGTCGATCTGCTTCGTTGCCAG
1 TTCAACCTACTCCACTGC-AACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAA
* * *
14167149 TACAGAAAGACAAGATCTGTTGTTTTTAGTCTGTTCCACTGCAAACTCAGGGAGGCAAGACTGGT
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* * *
14167214 GTTCTTCGATTTGCTTCGCTGCCAATACAAGAAGGCAAGATATGCTATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
** * * *
14167263 TTCAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTTTTAATCTGCTTCGCTGCCAA
1 TTCAACCTACTCCACTGC-AACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAA
* * *
14167328 TATAGGAAGGCAAGATCTGCTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* * *
14167393 GTTCTTCGATCTACTTCGCTACCAATACAGGAATGCAAGATCTGCTATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
** * * * * * *
14167442 TTCAGTCTGCTTCGCTGCAAACTCAGGGAGGCAATGCTGGTGTTTTCAATCTGCTTCGCTACCAA
1 TTCAACCTACTCCACTGC-AACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAA
* * *
14167507 TACAGGAAGGCAAGATCTGTTGTTTTTAGTCTGCTCTACTGCAAACTCAAGGAGGCAAGGCTGGT
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* *
14167572 GTTCGTCGATCTGCTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
** * * * * *
14167621 TTCAGTCTGCTCCGCTGCAAACTCAAGGAGGCAAGGCTAGTGTTTTCAATCTGCTTCGCTGCCAA
1 TTCAACCTACTCCACTGC-AACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAA
* *
14167686 TACAGGAAGGCAAGATCTGTTGTTTTTAGTCTGCTCCGCTGCAAACTCAGGGAGGCAAGGCTGGT
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* * * **
14167751 GTTCGTCGATCTGCTTCGCTCCCAATACAAGAAGGCAAGATCTAATATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
* ** * * * *
14167800 TTCAACCTACTCTACTGCTGCTCAGGGAGATAAGGCTTGCTGTCTTCAATCTACTTCGCTGCCAA
1 TTCAACCTACTCCACTGCAACTCAGGGAGGTAAGGC-TGGTGTTTTCAATCTGCTTCGCTGCCAA
* * * * * * ** * * **
14167865 TACAGGAAGACAAGTTCTGTTATTTTCAATATACTCCACTGC-TGCCCAGAGAGATAAGGCTGG-
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* * * * *
14167928 GGTCTTCGATCTACTTCGCTGCCAATACAGGAAGACAATATCTACTATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
* ** * * * * * *
14167977 TTCAACCTACTTCACTGCTGCTCAGGGAGATAAGGCTTGCTATCTTCGATCTACTTCGCTGCCAA
1 TTCAACCTACTCCACTGCAACTCAGGGAGGTAAGGC-TGGTGTTTTCAATCTGCTTCGCTGCCAA
* * * * ** * * ** ** *
14168042 TACAGGAAGACAAGGTCTGCTATTTTCAACCTACTCCACTAC-TGCTCAGGGAGATAAGGCCGG-
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* * * * * *
14168105 GGTCTTCAATCTACTTCGCTGTCAATACAGGAAGACAAGGTCTGCTATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
* * ** * * * * *
14168154 TTTAACCTACTCCACTACTGCTCAGGGAGATAAGGCTGGGGTCTTCGATCTACTTCGCTGCCAAT
1 TTCAACCTACTCCACTGCAACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAAT
* * * * ** * * ** ** * **
14168219 ATAGGAAGACAAGATCTGCTATTTTCAACCTACTTCGTTGC-TGCTCAAGGAGATAAGGCT--TG
66 ACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGTG
* * * * *
14168281 CTATCTTCGGTCTACTTTGCTGCCAATATAGGAAGACAAGATCTGCTATT
131 -T-TCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
14168331 TTCAACCTACTCCACT
1 TTCAACCTACTCCACT
14168347 ACTGCTCAGA
Statistics
Matches: 955, Mismatches: 125, Indels: 10
0.88 0.11 0.01
Matches are distributed among these distances:
175 1 0.00
176 78 0.08
177 290 0.30
178 28 0.03
179 558 0.58
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (178 bp):
TTCAACCTACTCCACTGCAACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAAT
ACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGTG
TTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
Found at i:14167893 original size:45 final size:44
Alignment explanation
Indices: 14167227--14168076 Score: 296
Period size: 45 Copynumber: 19.0 Consensus size: 44
14167217 CTTCGATTTG
* * * * *
14167227 CTTCGCTGCCAATACAAGAAGGCAAGATATGCTATTTTCAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * * * * * *
14167272 CTCCACTGCAAACT-CAGGGAGGCAAGGCTGGTGTTTTTAATCTG
1 CTTCGCTGCCAA-TACAGGAAGGCAAGTCTGCTGTTTTCAATCTA
* * * *
14167316 CTTCGCTGCCAATATAGGAAGGCAAGATCTGCTGTTTTTAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * * * * *
14167361 CTCCACTGCAAACT-CAGGGAGGCAAGGCTGGTGTTCTTCGATCTA
1 CTTCGCTGCCAA-TACAGGAAGGCAAGTCTGCTGTT-TTCAATCTA
* * * * *
14167406 CTTCGCTACCAATACAGGAATGCAAGATCTGCTATTTTCAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * *
14167451 CTTCGCTGCAAACT-CAGGGAGGCAA-TGCTGGTGTTTTCAATCTG
1 CTTCGCTGCCAA-TACAGGAAGGCAAGT-CTGCTGTTTTCAATCTA
* * * * *
14167495 CTTCGCTACCAATACAGGAAGGCAAGATCTGTTGTTTTTAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * * * * *
14167540 C-TCTACTGCAAACT-CAAGG-AGGCAAGGCTGGTGTTCGTCGATCTG
1 CTTC-GCTGCCAA-TAC-AGGAAGGCAAGTCTGCTGTT-TTCAATCTA
* * * *
14167585 CTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATTTTCAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * *
14167630 CTCCGCTGCAAACT-CAAGG-AGGCAAGGCTAG-TGTTTTCAATCTG
1 CTTCGCTGCCAA-TAC-AGGAAGGCAAGTCT-GCTGTTTTCAATCTA
* * * *
14167674 CTTCGCTGCCAATACAGGAAGGCAAGATCTGTTGTTTTTAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * * * * * *
14167719 CTCCGCTGCAAACT-CAGGGAGGCAAGGCTGGTGTTCGTCGATCTG
1 CTTCGCTGCCAA-TACAGGAAGGCAAGTCTGCTGTT-TTCAATCTA
* * ** * *
14167764 CTTCGCTCCCAATACAAGAAGGCAAGATCTAATATTTTCAACCTA
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* ** * *
14167809 CTCTACTGCTG-C--T-CAGGGAGATAAGGCTTGCTGTCTTCAATCTA
1 CT-T-C-GCTGCCAATACAGGAAGGCAAGTC-TGCTGTTTTCAATCTA
* * * *
14167853 CTTCGCTGCCAATACAGGAAGACAAGTTCTGTTATTTTCAATATA
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * **** ** * ** * *
14167898 CTCCACTG-CTGCCCA-GAGAGATAAGGCTGGGGTCTTCGATCTA
1 CTTCGCTGCCAATACAGGA-AGGCAAGTCTGCTGTTTTCAATCTA
* * * * *
14167941 CTTCGCTGCCAATACAGGAAGACAATATCTACTATTTTCAACCTA
1 CTTCGCTGCCAATACAGGAAGGCAA-GTCTGCTGTTTTCAATCTA
* *** * ** * * * *
14167986 CTTCACTGCTGCT-CAGGGAGATAAGGCTTGCTATCTTCGATCTA
1 CTTCGCTGCCAATACAGGAAGGCAAGTC-TGCTGTTTTCAATCTA
* * *
14168030 CTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATTTTCAACCTA
1 CTTCGCTGCCAATACAGGAAGGCAA-GTCTGCTGTTTTCAATCTA
14168075 CT
1 CT
14168077 CCACTACTGC
Statistics
Matches: 582, Mismatches: 176, Indels: 94
0.68 0.21 0.11
Matches are distributed among these distances:
41 4 0.01
42 2 0.00
43 29 0.05
44 194 0.33
45 313 0.54
46 35 0.06
47 2 0.00
48 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (44 bp):
CTTCGCTGCCAATACAGGAAGGCAAGTCTGCTGTTTTCAATCTA
Found at i:14168119 original size:43 final size:43
Alignment explanation
Indices: 14168066--14168199 Score: 110
Period size: 44 Copynumber: 3.1 Consensus size: 43
14168056 GTCTGCTATT
*
14168066 TTCAACCTACTCCACTACTGCTCAGGGAGATAAGGCCGGGGTC
1 TTCAACCTACTCCACTACTGCTCAGGGAGATAAGGCTGGGGTC
* * * * * * *** *
14168109 TTCAATCTACTTCGCT-GT-CAATACAGGAAGACAAGGTCTGCTATT
1 TTCAACCTACTCCACTACTGC--T-CAGGGAGATAAGG-CTGGGGTC
*
14168154 TTTAACCTACTCCACTACTGCTCAGGGAGATAAGGCTGGGGTC
1 TTCAACCTACTCCACTACTGCTCAGGGAGATAAGGCTGGGGTC
14168197 TTC
1 TTC
14168200 GATCTACTTC
Statistics
Matches: 62, Mismatches: 23, Indels: 12
0.64 0.24 0.12
Matches are distributed among these distances:
41 1 0.02
42 1 0.02
43 20 0.32
44 22 0.35
45 16 0.26
46 1 0.02
47 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (43 bp):
TTCAACCTACTCCACTACTGCTCAGGGAGATAAGGCTGGGGTC
Found at i:14168205 original size:265 final size:266
Alignment explanation
Indices: 14167756--14168367 Score: 938
Period size: 265 Copynumber: 2.3 Consensus size: 266
14167746 CTGGTGTTCG
* * * * ** * *
14167756 TCGATCTGCTTCGCTCCCAATACAAGAAGGCAAGATCTAATATTTTCAACCTACTCTACTGCTGC
1 TCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTGC
* * * *
14167821 TCAGGGAGATAAGGCTTGCTGTCTTCAATCTACTTCGCTGCCAATACAGGAAGACAAGTTCTGTT
66 TCAGGGAGATAAGGCTCGCGGTCTTCAATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCT
* *
14167886 ATTTTCAATATACTCCACTGCTGCCCAGAGAGATAAGGCTGGGGTCTTCGATCTACTTCGCTGCC
131 ATTTTCAACATACTCCACTACTGCCCAGAGAGATAAGGCTGGGGTCTTCGATCTACTTCGCTGCC
* *
14167951 AATACAGGAAGACAATATCTACTATTTTCAACCTACTTCACTGCTGCTCAGGGAGATAAGGCTTG
196 AATACAGGAAGACAAGATCTACTATTTTCAACCTACTTCACTGCTGCTCAAGGAGATAAGGCTTG
14168016 CTATCT
261 CTATCT
*
14168022 TCGATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATTTTCAACCTACTCCACTACTGC
1 TCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTGC
* *
14168087 TCAGGGAGATAAGGC-CGGGGTCTTCAATCTACTTCGCTGTCAATACAGGAAGACAAGGTCTGCT
66 TCAGGGAGATAAGGCTCGCGGTCTTCAATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCT
* * * *
14168151 ATTTTTAACCTACTCCACTACTGCTCAGGGAGATAAGGCTGGGGTCTTCGATCTACTTCGCTGCC
131 ATTTTCAACATACTCCACTACTGCCCAGAGAGATAAGGCTGGGGTCTTCGATCTACTTCGCTGCC
* * **
14168216 AATATAGGAAGACAAGATCTGCTATTTTCAACCTACTTCGTTGCTGCTCAAGGAGATAAGGCTTG
196 AATACAGGAAGACAAGATCTACTATTTTCAACCTACTTCACTGCTGCTCAAGGAGATAAGGCTTG
14168281 CTATCT
261 CTATCT
* * *
14168287 TCGGTCTACTTTGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTGC
1 TCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTGC
*
14168352 TCAGAGAGATAAGGCT
66 TCAGGGAGATAAGGCT
14168368 TTGTGGTTTC
Statistics
Matches: 313, Mismatches: 32, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
265 242 0.77
266 71 0.23
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (266 bp):
TCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTGC
TCAGGGAGATAAGGCTCGCGGTCTTCAATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCT
ATTTTCAACATACTCCACTACTGCCCAGAGAGATAAGGCTGGGGTCTTCGATCTACTTCGCTGCC
AATACAGGAAGACAAGATCTACTATTTTCAACCTACTTCACTGCTGCTCAAGGAGATAAGGCTTG
CTATCT
Found at i:14168341 original size:45 final size:45
Alignment explanation
Indices: 14167938--14168341 Score: 151
Period size: 45 Copynumber: 9.1 Consensus size: 45
14167928 GGTCTTCGAT
* * *
14167938 CTACTTCGCTGCCAATACAGGAAGACAATATCTACTATTTTCAAC
1 CTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAAC
* *** * * * * * * *
14167983 CTACTTCACTGCTGCT-CAGGGAGATAAG-GCTTGCTATCTTCGAT
1 CTACTTCGCTGCCAATATAGGAAGACAAGATC-TGCTATTTTCAAC
* *
14168027 CTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATTTTCAAC
1 CTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAAC
* * * *** * * * * * *** * *
14168072 CTACTCCACTACTGCT-CAGGGAGATAAG-GCCGGGGTCTTCAAT
1 CTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAAC
* * * *
14168115 CTACTTCGCTGTCAATACAGGAAGACAAGGTCTGCTATTTTTAAC
1 CTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAAC
* * * *** * * * * *** * * *
14168160 CTACTCCACTACTGCT-CAGGGAGATAAG-GCTGGGGTCTTCGAT
1 CTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAAC
14168203 CTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAAC
1 CTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAAC
* *** * * * ***
14168248 CTACTTCGTTGCTGCTCA-AGG-AGATAAG-GCTTGCTATCTTCGGT
1 CTACTTCGCTGCCAAT-ATAGGAAGACAAGATC-TGCTATTTTCAAC
*
14168292 CTACTTTGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAAC
1 CTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAAC
14168337 CTACT
1 CTACT
14168342 CCACTACTGC
Statistics
Matches: 239, Mismatches: 108, Indels: 24
0.64 0.29 0.06
Matches are distributed among these distances:
43 37 0.15
44 98 0.41
45 101 0.42
46 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (45 bp):
CTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAAC
Found at i:14175341 original size:3 final size:3
Alignment explanation
Indices: 14175335--14175414 Score: 124
Period size: 3 Copynumber: 26.7 Consensus size: 3
14175325 AAATAAAACC
* * * *
14175335 AAT AAT AAT AAT AGT AAT AAT ACT AAT AAC AAT AAC AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14175383 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14175415 ATAAATAAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:14176937 original size:14 final size:14
Alignment explanation
Indices: 14176918--14176951 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
14176908 ATTTATTCTA
14176918 AATAAAA-TATAATT
1 AATAAAACTA-AATT
14176932 AATAAAACTAAATT
1 AATAAAACTAAATT
14176946 AATAAA
1 AATAAA
14176952 TAAAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.89
15 2 0.11
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (14 bp):
AATAAAACTAAATT
Found at i:14182680 original size:29 final size:29
Alignment explanation
Indices: 14182647--14182739 Score: 95
Period size: 29 Copynumber: 3.2 Consensus size: 29
14182637 GGTTCACCAT
14182647 AAAGGCTTACTCTTCTAGAGTTTTGCCAC
1 AAAGGCTTACTCTTCTAGAGTTTTGCCAC
* * *
14182676 AAAGG-TTA-TCCTT-TAACAGGTTCGCCAC
1 AAAGGCTTACT-CTTCT-AGAGTTTTGCCAC
*
14182704 AAAGGCTTGC-CTTTCTAGAGTTTTGCCAC
1 AAAGGCTTACTC-TTCTAGAGTTTTGCCAC
14182733 AAAGGCT
1 AAAGGCT
14182740 ATCCTTTCAC
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
27 2 0.04
28 22 0.43
29 26 0.51
30 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (29 bp):
AAAGGCTTACTCTTCTAGAGTTTTGCCAC
Found at i:14182697 original size:57 final size:57
Alignment explanation
Indices: 14182588--14182757 Score: 184
Period size: 57 Copynumber: 3.0 Consensus size: 57
14182578 TAAGTACTTG
* * * * * * * *
14182588 CCACAAATGCTTTCCTTTC-AGAGTCTCGCCATAAAGAC-GTCCTTTAAGAGGTTCA
1 CCACAAAGGCTTACCTTTCTAGAGTTTTGCCACAAAGGCTATCCTTTAACAGGTTCA
* * *
14182643 CCATAAAGGCTTA-CTCTTCTAGAGTTTTGCCACAAAGGTTATCCTTTAACAGGTTCG
1 CCACAAAGGCTTACCT-TTCTAGAGTTTTGCCACAAAGGCTATCCTTTAACAGGTTCA
* * *
14182700 CCACAAAGGCTTGCCTTTCTAGAGTTTTGCCACAAAGGCTATCCTTTCACAAGTTCA
1 CCACAAAGGCTTACCTTTCTAGAGTTTTGCCACAAAGGCTATCCTTTAACAGGTTCA
14182757 C
1 C
14182758 TGTAAATAGA
Statistics
Matches: 94, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
54 2 0.02
55 13 0.14
56 14 0.15
57 63 0.67
58 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (57 bp):
CCACAAAGGCTTACCTTTCTAGAGTTTTGCCACAAAGGCTATCCTTTAACAGGTTCA
Found at i:14182745 original size:29 final size:29
Alignment explanation
Indices: 14182659--14182747 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 29
14182649 AGGCTTACTC
*
14182659 TTCTAGAGTTTTGCCACAAAGGTTATCCT
1 TTCTAGAGTTTTGCCACAAAGGCTATCCT
* * * *
14182688 TT-AACAGGTTCGCCACAAAGGCT-TGCCT
1 TTCTAGAGTTTTGCCACAAAGGCTAT-CCT
14182716 TTCTAGAGTTTTGCCACAAAGGCTATCCT
1 TTCTAGAGTTTTGCCACAAAGGCTATCCT
14182745 TTC
1 TTC
14182748 ACAAGTTCAC
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
27 1 0.02
28 21 0.44
29 25 0.52
30 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (29 bp):
TTCTAGAGTTTTGCCACAAAGGCTATCCT
Found at i:14184681 original size:29 final size:29
Alignment explanation
Indices: 14184574--14184666 Score: 102
Period size: 29 Copynumber: 3.2 Consensus size: 29
14184564 CATTCACTAA
*
14184574 AAAGGCTTACCTTTCTAGAGTTTTGCCAC
1 AAAGGCTTACCTTTCCAGAGTTTTGCCAC
* * *
14184603 AAAGG-TTGTCC-TT-AAGTAGGTTTGCCAC
1 AAAGGCTT-ACCTTTCCAG-AGTTTTGCCAC
*
14184631 AAAGGCTTACCTTTCCAGAGTTTTGTCAC
1 AAAGGCTTACCTTTCCAGAGTTTTGCCAC
14184660 AAAGGCT
1 AAAGGCT
14184667 ACCCTTTAGC
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
27 2 0.04
28 21 0.40
29 27 0.52
30 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (29 bp):
AAAGGCTTACCTTTCCAGAGTTTTGCCAC
Found at i:14184692 original size:57 final size:57
Alignment explanation
Indices: 14184570--14184702 Score: 167
Period size: 57 Copynumber: 2.3 Consensus size: 57
14184560 GTTACATTCA
* * ** * * *
14184570 CTAAAAAGGCTTACCTTTCTAGAGTTTTGCCACAAAGGTTGTCCTTAAGTAGGTTTG
1 CTAAAAAGGCTTACCTTTCCAGAGTTTTGCCACAAAGGCTACCCTTAAGCAAGTTCG
* * * *
14184627 CCACAAAGGCTTACCTTTCCAGAGTTTTGTCACAAAGGCTACCCTTTAGCAAGTTCG
1 CTAAAAAGGCTTACCTTTCCAGAGTTTTGCCACAAAGGCTACCCTTAAGCAAGTTCG
14184684 CTAAAAAGGCTTACCTTTC
1 CTAAAAAGGCTTACCTTTC
14184703 TTGGTGATTT
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
57 63 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (57 bp):
CTAAAAAGGCTTACCTTTCCAGAGTTTTGCCACAAAGGCTACCCTTAAGCAAGTTCG
Found at i:14191271 original size:26 final size:27
Alignment explanation
Indices: 14191217--14191281 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
14191207 TAATTTTACT
* * * *
14191217 CTAGTTAAATTTTGACGATTTTACTCC
1 CTAGTAAAATTTTAACAATTTTACACC
14191244 CT-GATAAAATTTTAACAATTTTA-ACC
1 CTAG-TAAAATTTTAACAATTTTACACC
14191270 CTAGTAAAATTT
1 CTAGTAAAATTT
14191282 CGAGAAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
26 13 0.41
27 19 0.59
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (27 bp):
CTAGTAAAATTTTAACAATTTTACACC
Found at i:14194856 original size:127 final size:127
Alignment explanation
Indices: 14194630--14194875 Score: 420
Period size: 127 Copynumber: 1.9 Consensus size: 127
14194620 CTCATTTCTA
* * *
14194630 GTTATACTAAGTACATGTTTAGGTTTGTCTATTAATGCAAGTTGTCTTTCCATACTACGATCTGA
1 GTTATACTAAGGACATGTTTAGGTTTGTCTACTAATGCAAGTTGTCTTTCCATACTACGATCTAA
*
14194695 CCTCGTAATACCACTTAGTACTAGTTAAACATTTAGACAACAAATAAACAACATTTTCTTTG
66 CCACGTAATACCACTTAGTACTAGTTAAACATTTAGACAACAAATAAACAACATTTTCTTTG
*
14194757 GTTATACTAAGGACATGTTTAGGTTTGTCTACTAATGTAAGTTGTCTTTCCATACTACGATCTAA
1 GTTATACTAAGGACATGTTTAGGTTTGTCTACTAATGCAAGTTGTCTTTCCATACTACGATCTAA
* * *
14194822 CCACGTAATACCACTTAGTATTAGTTAAACATTTAGACAACCAATAAGCAACAT
66 CCACGTAATACCACTTAGTACTAGTTAAACATTTAGACAACAAATAAACAACAT
14194876 GTTCCTCCAT
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
127 111 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.35
Consensus pattern (127 bp):
GTTATACTAAGGACATGTTTAGGTTTGTCTACTAATGCAAGTTGTCTTTCCATACTACGATCTAA
CCACGTAATACCACTTAGTACTAGTTAAACATTTAGACAACAAATAAACAACATTTTCTTTG
Found at i:14197893 original size:15 final size:15
Alignment explanation
Indices: 14197873--14197912 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
14197863 ATCAATTCAA
14197873 TTCATCATTCCTTTT
1 TTCATCATTCCTTTT
14197888 TTCATCATTCCTTTT
1 TTCATCATTCCTTTT
14197903 TTCATCATTC
1 TTCATCATTC
14197913 TACACTTCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.15, C:0.28, G:0.00, T:0.57
Consensus pattern (15 bp):
TTCATCATTCCTTTT
Found at i:14204188 original size:43 final size:43
Alignment explanation
Indices: 14204120--14204208 Score: 124
Period size: 43 Copynumber: 2.1 Consensus size: 43
14204110 GTACACAAGA
* * * ** *
14204120 TCTAGGGGTTTTTCGGCTCTTGTTCCTTTTTGATTAAAAGGTC
1 TCTAAGGGTTTTTCGACTCTCGTTCCTTTAGGATTAAAAGATC
14204163 TCTAAGGGTTTTTCGACTCTCGTTCCTTTAGGATTAAAAGATC
1 TCTAAGGGTTTTTCGACTCTCGTTCCTTTAGGATTAAAAGATC
14204206 TCT
1 TCT
14204209 TAGTCATCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (43 bp):
TCTAAGGGTTTTTCGACTCTCGTTCCTTTAGGATTAAAAGATC
Found at i:14211913 original size:42 final size:42
Alignment explanation
Indices: 14211850--14211932 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
14211840 GAAAGATGTG
*
14211850 TTTGGCAAGATGATTGCGAGATGGTATGATCAATTTATGGGT
1 TTTGGCAAGATGATTGAGAGATGGTATGATCAATTTATGGGT
14211892 TTTGGCAAGATGATTGAGAGATGGTATGATCAATTTATGGG
1 TTTGGCAAGATGATTGAGAGATGGTATGATCAATTTATGGG
14211933 AACTGCTGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.28, C:0.06, G:0.31, T:0.35
Consensus pattern (42 bp):
TTTGGCAAGATGATTGAGAGATGGTATGATCAATTTATGGGT
Found at i:14217065 original size:15 final size:16
Alignment explanation
Indices: 14217037--14217066 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14217027 CAACCATGCT
14217037 TTAACACAATATCAAA
1 TTAACACAATATCAAA
14217053 TTAACAC-ATATCAA
1 TTAACACAATATCAA
14217067 TAAGGCGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (16 bp):
TTAACACAATATCAAA
Found at i:14217135 original size:21 final size:21
Alignment explanation
Indices: 14217111--14217151 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
14217101 AATGTCGTAT
14217111 ACATTC-CAAATACATCAACTA
1 ACATTCACAAAT-CATCAACTA
14217132 ACATTCAGCAAATCATCAAC
1 ACATTCA-CAAATCATCAAC
14217152 CATAAGTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.33
22 7 0.39
23 5 0.28
ACGTcount: A:0.46, C:0.29, G:0.02, T:0.22
Consensus pattern (21 bp):
ACATTCACAAATCATCAACTA
Found at i:14220102 original size:19 final size:19
Alignment explanation
Indices: 14220075--14220114 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
14220065 CACAGGAACG
*
14220075 AAATCCTCGCGGTAAATCT
1 AAATACTCGCGGTAAATCT
14220094 AAATACTCGCGGTAAATCT
1 AAATACTCGCGGTAAATCT
14220113 AA
1 AA
14220115 GGGCAAATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (19 bp):
AAATACTCGCGGTAAATCT
Found at i:14233704 original size:124 final size:124
Alignment explanation
Indices: 14233491--14233722 Score: 403
Period size: 124 Copynumber: 1.9 Consensus size: 124
14233481 TTCTCTGAGC
*
14233491 AGAATACAAATAGTCATTTATGCGTATGTTTAGTATGATGTCCTTTCATGCATAAGGATGTTTAG
1 AGAATACAAATAGTAATTTATGCGTATGTTTAGTATGATGTCCTTTCATGCATAAGGATGTTTAG
*
14233556 GTCACATAAGACTTTTCGGTTTGTAATGTTCTAAGGCTTAGGAATTTAATTCTCTGGTT
66 GTCACATAAGACTTTTCGGCTTGTAATGTTCTAAGGCTTAGGAATTTAATTCTCTGGTT
14233615 AGAATACAAATAGTAATTTATGCGTATGTTTAGTATGATGT-CTATTCATGCATAAGGATGTTTA
1 AGAATACAAATAGTAATTTATGCGTATGTTTAGTATGATGTCCT-TTCATGCATAAGGATGTTTA
* * *
14233679 GGTCACATAGGACTTTTCGGCTTGTAATGTTTTGAGGCTTAGGA
65 GGTCACATAAGACTTTTCGGCTTGTAATGTTCTAAGGCTTAGGA
14233723 CAGGTATGGA
Statistics
Matches: 102, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
123 2 0.02
124 100 0.98
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (124 bp):
AGAATACAAATAGTAATTTATGCGTATGTTTAGTATGATGTCCTTTCATGCATAAGGATGTTTAG
GTCACATAAGACTTTTCGGCTTGTAATGTTCTAAGGCTTAGGAATTTAATTCTCTGGTT
Found at i:14239801 original size:13 final size:13
Alignment explanation
Indices: 14239783--14239810 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14239773 ATAAAATTAG
14239783 AAAGATGATAAAT
1 AAAGATGATAAAT
14239796 AAAGATGATAAAT
1 AAAGATGATAAAT
14239809 AA
1 AA
14239811 TCAAATAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAGATGATAAAT
Found at i:14240964 original size:24 final size:25
Alignment explanation
Indices: 14240928--14241053 Score: 127
Period size: 24 Copynumber: 5.2 Consensus size: 25
14240918 TGGTATCCGA
14240928 AGCTTCCCGATTAATGGCTCTTCA-G
1 AGCTTCCC-ATTAATGGCTCTTCATG
* * *
14240953 AGCTACCCATTATTGGCTC-GCATG
1 AGCTTCCCATTAATGGCTCTTCATG
*
14240977 AGCTTCCCATTTATGGCTCTT-ATG
1 AGCTTCCCATTAATGGCTCTTCATG
* * * *
14241001 AGCTACCCGTTATTGGCTC-GCATG
1 AGCTTCCCATTAATGGCTCTTCATG
*
14241025 AGCTTCCCATTTATGGCTCTT-ATG
1 AGCTTCCCATTAATGGCTCTTCATG
14241049 AGCTT
1 AGCTT
14241054 TCTATTATAA
Statistics
Matches: 80, Mismatches: 17, Indels: 9
0.75 0.16 0.08
Matches are distributed among these distances:
23 2 0.03
24 71 0.89
25 7 0.09
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (25 bp):
AGCTTCCCATTAATGGCTCTTCATG
Found at i:14241004 original size:48 final size:48
Alignment explanation
Indices: 14240928--14241052 Score: 207
Period size: 48 Copynumber: 2.6 Consensus size: 48
14240918 TGGTATCCGA
*
14240928 AGCTTCCCGATTAATGGCTCTTCA-GAGCTACCCATTATTGGCTCGCATG
1 AGCTTCCC-ATTTATGGCTCTT-ATGAGCTACCCATTATTGGCTCGCATG
*
14240977 AGCTTCCCATTTATGGCTCTTATGAGCTACCCGTTATTGGCTCGCATG
1 AGCTTCCCATTTATGGCTCTTATGAGCTACCCATTATTGGCTCGCATG
14241025 AGCTTCCCATTTATGGCTCTTATGAGCT
1 AGCTTCCCATTTATGGCTCTTATGAGCT
14241053 TTCTATTATA
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
47 1 0.01
48 64 0.88
49 8 0.11
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.34
Consensus pattern (48 bp):
AGCTTCCCATTTATGGCTCTTATGAGCTACCCATTATTGGCTCGCATG
Found at i:14243349 original size:23 final size:22
Alignment explanation
Indices: 14243306--14243349 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
14243296 TTCTAAGTCG
14243306 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
14243329 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
14243350 TTAGTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:14243458 original size:45 final size:45
Alignment explanation
Indices: 14243394--14243487 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 45
14243384 AACATGTACT
* * * *
14243394 CGGTGGATTTAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAAACAATGATGTC
*
14243439 CGGTGGAATCAGCACATAGCAACCACCTTACTAAACAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAAACAATGATGTC
14243484 CGGT
1 CGGT
14243488 TCACATAGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAAACAATGATGTC
Found at i:14243698 original size:101 final size:102
Alignment explanation
Indices: 14243490--14243709 Score: 232
Period size: 101 Copynumber: 2.2 Consensus size: 102
14243480 TGTTCGGTTC
* * *
14243490 ACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCTATACAAGTATTAGCCTGC
1 ACATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACAAGTAGTAGCCTGC
* * **
14243555 ACATGGTACTACACACATGATCGAAACTATTCGGTATT
65 ACATAGTACTACACACATGATCCAAACTATTCACTATT
* * * * *
14243593 -CATAGTAGCCTGTACATAGTACTACACTTGCGACC-TATCATTCCGGTACACGTAGTAGCCTGC
1 ACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACAAGTAGTAGCCTGC
* * *
14243656 ACATAGTACTACACACGTGA-CCATCACT-TTCACTTTT
65 ACATAGTACTACACACATGATCCA-AACTATTCACTATT
* *
14243693 ACATAGTGGCCTACACA
1 ACATAGTAGCCTGCACA
14243710 CGATCTGTGC
Statistics
Matches: 96, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
100 12 0.12
101 52 0.54
102 32 0.33
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (102 bp):
ACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACAAGTAGTAGCCTGCA
CATAGTACTACACACATGATCCAAACTATTCACTATT
Found at i:14257945 original size:16 final size:17
Alignment explanation
Indices: 14257924--14257957 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14257914 TACACTATTT
14257924 AAAATA-ATATTTTTTA
1 AAAATATATATTTTTTA
14257940 AAAATATATATTTTTTA
1 AAAATATATATTTTTTA
14257957 A
1 A
14257958 TTTTATCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAAATATATATTTTTTA
Found at i:14263708 original size:23 final size:24
Alignment explanation
Indices: 14263682--14263727 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
14263672 GTCCAATCTG
14263682 AAAT-TTTATTTAAAAAAATAAAA
1 AAATATTTATTTAAAAAAATAAAA
* * *
14263705 AAATATTTTTTTATAAAATTAAA
1 AAATATTTATTTAAAAAAATAAA
14263728 GAATCAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
AAATATTTATTTAAAAAAATAAAA
Found at i:14263926 original size:20 final size:19
Alignment explanation
Indices: 14263892--14263930 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
14263882 AAATAGATTT
*
14263892 ATAATTATATTTAAATAAA
1 ATAATAATATTTAAATAAA
14263911 ATAATAATAGTTTAAATAAA
1 ATAATAATA-TTTAAATAAA
14263931 GCAATTACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
ATAATAATATTTAAATAAA
Found at i:14273604 original size:2 final size:2
Alignment explanation
Indices: 14273597--14273644 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
14273587 TATAATGATA
14273597 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14273639 AT AT AT
1 AT AT AT
14273645 TACTAAAGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14274984 original size:12 final size:12
Alignment explanation
Indices: 14274947--14274997 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
14274937 ATTAGAATCT
14274947 TTACTTGCTT-C
1 TTACTTGCTTAC
* *
14274958 TTTACTTACTCAC
1 -TTACTTGCTTAC
*
14274971 TTACTTGTTTAC
1 TTACTTGCTTAC
14274983 TTACTTGCTTAC
1 TTACTTGCTTAC
14274995 TTA
1 TTA
14274998 AATAACTCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
12 31 0.97
13 1 0.03
ACGTcount: A:0.18, C:0.24, G:0.06, T:0.53
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:14275313 original size:50 final size:50
Alignment explanation
Indices: 14275245--14275487 Score: 270
Period size: 50 Copynumber: 4.7 Consensus size: 50
14275235 TTTTCTGTAC
* * * ** * *
14275245 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * **
14275295 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
14275345 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
14275395 TGCCAACGCCATGTCCCAGACATGGTCCTACATGAGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GG
* * *
14275451 TGCCAATGTCATGTCCCAAACATGGTCTTACATGGGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
14275488 TCTCATTCCC
Statistics
Matches: 164, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
50 126 0.77
53 5 0.03
56 33 0.20
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:14286348 original size:36 final size:37
Alignment explanation
Indices: 14286303--14286385 Score: 150
Period size: 37 Copynumber: 2.3 Consensus size: 37
14286293 TAATAAATAT
14286303 CAAACAATTCCTCTTGAT-ATTGGCATTGATGAAGAA
1 CAAACAATTCCTCTTGATAATTGGCATTGATGAAGAA
*
14286339 CAAACAATTCCTCTTGATAATTGGCGTTGATGAAGAA
1 CAAACAATTCCTCTTGATAATTGGCATTGATGAAGAA
14286376 CAAACAATTC
1 CAAACAATTC
14286386 ATTCTTTGGA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
36 18 0.40
37 27 0.60
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (37 bp):
CAAACAATTCCTCTTGATAATTGGCATTGATGAAGAA
Found at i:14287714 original size:8 final size:8
Alignment explanation
Indices: 14287669--14287722 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
14287659 ATTTTTTTAG
14287669 AAAAATAT
1 AAAAATAT
14287677 AAAAGATAT
1 AAAA-ATAT
**
14287686 AAATTTAT
1 AAAAATAT
*
14287694 TAAAATAT
1 AAAAATAT
*
14287702 TAAAATAT
1 AAAAATAT
*
14287710 AAAAAAAT
1 AAAAATAT
14287718 AAAAA
1 AAAAA
14287723 GCTAAAGATG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
8 31 0.82
9 7 0.18
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (8 bp):
AAAAATAT
Found at i:14287936 original size:24 final size:25
Alignment explanation
Indices: 14287896--14287943 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
14287886 AATAAGAAAT
*
14287896 GAGTTACAAGAAGATGAAATGTGAA
1 GAGTTACAAGAAGATGAAAGGTGAA
*
14287921 GAGTTA-AGGAAGATGAAAGGTGA
1 GAGTTACAAGAAGATGAAAGGTGA
14287944 TAGGTTGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.46, C:0.02, G:0.33, T:0.19
Consensus pattern (25 bp):
GAGTTACAAGAAGATGAAAGGTGAA
Found at i:14294698 original size:15 final size:16
Alignment explanation
Indices: 14294660--14294701 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
14294650 TTTAAAAATC
*
14294660 AAATTAAAATATTAAT
1 AAATTAATATATTAAT
*
14294676 AAACTAATAT-TTAAT
1 AAATTAATATATTAAT
*
14294691 TAATTAATATA
1 AAATTAATATA
14294702 AAATATCTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATTAATATATTAAT
Found at i:14294962 original size:30 final size:31
Alignment explanation
Indices: 14294907--14294974 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
14294897 ACACTTAAAA
** * **
14294907 TATTTACACTATTGGTCCTTCAAATTTTTCG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
14294938 TATTTACACT-TTAATCCCTCAAATTTTGAG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
14294968 TATTTAC
1 TATTTAC
14294975 TCTTGGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.47
Consensus pattern (31 bp):
TATTTACACTATTAATCCCTCAAATTTTGAG
Found at i:14297760 original size:65 final size:65
Alignment explanation
Indices: 14297680--14297809 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
14297670 TCAAAGAGTA
14297680 AGGAAAAAGAATTTTCAATTGCCAAAAACCACAAAAAAGGAAAACCAACGTCAGAATTTTTGAGG
1 AGGAAAAAGAATTTTCAATTGCCAAAAACCACAAAAAAGGAAAACCAACGTCAGAATTTTTGAGG
14297745 AGGAAAAAGAATTTTCAATTGCCAAAAACCACAAAAAAGGAAAACCAACGTCAGAATTTTTGAGG
1 AGGAAAAAGAATTTTCAATTGCCAAAAACCACAAAAAAGGAAAACCAACGTCAGAATTTTTGAGG
14297810 GAGAGAGGGA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (65 bp):
AGGAAAAAGAATTTTCAATTGCCAAAAACCACAAAAAAGGAAAACCAACGTCAGAATTTTTGAGG
Found at i:14297901 original size:17 final size:17
Alignment explanation
Indices: 14297879--14297914 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
14297869 ATCTTAACCA
14297879 CCCACTAAC-CATCAAAT
1 CCCACTAACTCA-CAAAT
14297896 CCCACTAACTCACAAAT
1 CCCACTAACTCACAAAT
14297913 CC
1 CC
14297915 TTCAGACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
18 2 0.11
ACGTcount: A:0.39, C:0.44, G:0.00, T:0.17
Consensus pattern (17 bp):
CCCACTAACTCACAAAT
Found at i:14303387 original size:43 final size:43
Alignment explanation
Indices: 14303322--14303408 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
14303312 TGTTACAAGG
*
14303322 CTCAGACCGTGTGGATAGTCGAAGTAGGGACACACGGTCATGT
1 CTCAGACCGTGTGGATAGTCGAAATAGGGACACACGGTCATGT
* ** * * *
14303365 CTCAGCCCGTGTTTATATTCGAAATAGGGCCACACGGTCGTGT
1 CTCAGACCGTGTGGATAGTCGAAATAGGGACACACGGTCATGT
14303408 C
1 C
14303409 GCAAGCCATG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (43 bp):
CTCAGACCGTGTGGATAGTCGAAATAGGGACACACGGTCATGT
Done.