Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 56 of 208
Found at i:15868221 original size:24 final size:22
Alignment explanation
Indices: 15868186--15868244 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
15868176 AAAATTAGTT
* * *
15868186 AAAATTTCAAAACATATATATAA
1 AAAAATTCAAAA-ATAAAAATAA
*
15868209 AAAAATTCGAAAAATAAAAATTA
1 AAAAATTC-AAAAATAAAAATAA
15868232 AAAAATT-AAAAAT
1 AAAAATTCAAAAAT
15868245 TGAAAATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 6 0.19
23 21 0.68
24 4 0.13
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (22 bp):
AAAAATTCAAAAATAAAAATAA
Found at i:15868227 original size:15 final size:15
Alignment explanation
Indices: 15868209--15868250 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
15868199 ATATATATAA
15868209 AAAAATTCGAAAAA-T
1 AAAAATT-GAAAAATT
*
15868224 AAAAATTAAAAAATT
1 AAAAATTGAAAAATT
15868239 AAAAATTGAAAA
1 AAAAATTGAAAA
15868251 TATAGAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.21
Consensus pattern (15 bp):
AAAAATTGAAAAATT
Found at i:15868391 original size:18 final size:19
Alignment explanation
Indices: 15868359--15868404 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
15868349 TGTGTTTTTA
15868359 TTTTTTTATTGTTTG-AAT
1 TTTTTTTATTGTTTGAAAT
15868377 TTTTTATTATT-TTTGAAAT
1 TTTTT-TTATTGTTTGAAAT
*
15868396 TTTATTTAT
1 TTTTTTTAT
15868405 ATTCAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.72
Consensus pattern (19 bp):
TTTTTTTATTGTTTGAAAT
Found at i:15868398 original size:17 final size:19
Alignment explanation
Indices: 15868357--15868401 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
15868347 AATGTGTTTT
*
15868357 TATTTTTTTATTGTTTGAA
1 TATTTTATTATTGTTTGAA
*
15868376 TTTTTTATTATT-TTTGAA
1 TATTTTATTATTGTTTGAA
15868394 -ATTTTATT
1 TATTTTATT
15868402 TATATTCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 7 0.30
18 6 0.26
19 10 0.43
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (19 bp):
TATTTTATTATTGTTTGAA
Found at i:15875558 original size:59 final size:59
Alignment explanation
Indices: 15875470--15875773 Score: 434
Period size: 59 Copynumber: 5.2 Consensus size: 59
15875460 TCATCGACCA
15875470 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAATT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAATT
* * *
15875529 ATGAAAAGGGATAGCTTCGGCTATAGATTATGAAAAGGGATGGTGATGGCCATCGAATT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAATT
* * * *
15875588 ATGTAAAGGGATAGCTTTGACTATCGATTATGAAAAAGGATGGTGACGACCATC-AATT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAATT
* * * *
15875646 ATGAAAAGGGAAAGC-TCGGCTATCGATTACGAAAAGAGATGGTGACGACCATTGAATT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAATT
* * * * * *
15875704 ATGAAAAGGGATAACTTTGACTATTGATTATAAAAAGGGATGGTGACGACCATC-AACT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAATT
15875762 ATGAAAAGGGAT
1 ATGAAAAGGGAT
15875774 GGTGACGACC
Statistics
Matches: 215, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
57 32 0.15
58 49 0.23
59 134 0.62
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (59 bp):
ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAATT
Found at i:15875722 original size:116 final size:117
Alignment explanation
Indices: 15875470--15875772 Score: 448
Period size: 116 Copynumber: 2.6 Consensus size: 117
15875460 TCATCGACCA
* * *
15875470 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAATTATGAAA
1 ATGAAAAGGGATAGCTTTGACTATCGATTATGAAAAAGGATGGTGACGACCATC-AATTATGAAA
* * * * *
15875535 AGGGATAGCTTCGGCTATAGATTATGAAAAGGGATGGTGATGGCCATCGAATT
65 AGGGAAAGCTTCGGCTATAGATTACGAAAAGAGATGGTGACGACCATCGAATT
*
15875588 ATGTAAAGGGATAGCTTTGACTATCGATTATGAAAAAGGATGGTGACGACCATCAATTATGAAAA
1 ATGAAAAGGGATAGCTTTGACTATCGATTATGAAAAAGGATGGTGACGACCATCAATTATGAAAA
* *
15875653 GGGAAAGC-TCGGCTATCGATTACGAAAAGAGATGGTGACGACCATTGAATT
66 GGGAAAGCTTCGGCTATAGATTACGAAAAGAGATGGTGACGACCATCGAATT
* * *
15875704 ATGAAAAGGGATAACTTTGACTATTGATTAT-AAAAAGGGATGGTGACGACCATCAACTATGAAA
1 ATGAAAAGGGATAGCTTTGACTATCGATTATGAAAAA-GGATGGTGACGACCATCAATTATGAAA
15875768 AGGGA
65 AGGGA
15875773 TGGTGACGAC
Statistics
Matches: 169, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
115 5 0.03
116 96 0.57
117 18 0.11
118 50 0.30
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (117 bp):
ATGAAAAGGGATAGCTTTGACTATCGATTATGAAAAAGGATGGTGACGACCATCAATTATGAAAA
GGGAAAGCTTCGGCTATAGATTACGAAAAGAGATGGTGACGACCATCGAATT
Found at i:15875768 original size:29 final size:29
Alignment explanation
Indices: 15875496--15875785 Score: 196
Period size: 29 Copynumber: 9.9 Consensus size: 29
15875486 TCGGCTATCG
15875496 ATTATGAAAAGGGATGGTGACGACCATCGA
1 ATTATGAAAAGGGATGGTGACGACCATC-A
* * * *
15875526 ATTATGAAAAGGGATAGCT-TCGGCTAT-A
1 ATTATGAAAAGGGAT-GGTGACGACCATCA
* *
15875554 GATTATGAAAAGGGATGGTGATGGCCATCGA
1 -ATTATGAAAAGGGATGGTGACGACCATC-A
* * ** * *
15875585 ATTATGTAAAGGGATAGCT-TTGACTATCG
1 ATTATGAAAAGGGAT-GGTGACGACCATCA
*
15875614 ATTATGAAAAAGGATGGTGACGACCATCA
1 ATTATGAAAAGGGATGGTGACGACCATCA
* * * * *
15875643 ATTATGAAAAGGGAAAGCT--CGGCTATCG
1 ATTATGAAAAGGG-ATGGTGACGACCATCA
* * *
15875671 ATTACGAAAAGAGATGGTGACGACCATTGA
1 ATTATGAAAAGGGATGGTGACGACCA-TCA
** ** * **
15875701 ATTATGAAAAGGGATAACT-TTGACTATTG
1 ATTATGAAAAGGGAT-GGTGACGACCATCA
*
15875730 ATTATAAAAAGGGATGGTGACGACCATCA
1 ATTATGAAAAGGGATGGTGACGACCATCA
*
15875759 ACTATGAAAAGGGATGGTGACGACCAT
1 ATTATGAAAAGGGATGGTGACGACCAT
15875786 GTGTCCCTAC
Statistics
Matches: 193, Mismatches: 54, Indels: 27
0.70 0.20 0.10
Matches are distributed among these distances:
27 3 0.02
28 23 0.12
29 100 0.52
30 61 0.32
31 6 0.03
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (29 bp):
ATTATGAAAAGGGATGGTGACGACCATCA
Found at i:15876082 original size:21 final size:20
Alignment explanation
Indices: 15876045--15876083 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15876035 CTGCAATTTG
*
15876045 AAAAATTCTAACTTTTTCCC
1 AAAAATTCTAACATTTTCCC
15876065 AAAAATTCTATACATTTTC
1 AAAAATTCTA-ACATTTTC
15876084 TATTTAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAAATTCTAACATTTTCCC
Found at i:15879414 original size:32 final size:32
Alignment explanation
Indices: 15879378--15879441 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
15879368 TGAATCAATA
15879378 TTATTACATTCCAATTCCTTACTGATGCCCCT
1 TTATTACATTCCAATTCCTTACTGATGCCCCT
15879410 TTATTACATTCCAATTCCTTACTGATGCCCCT
1 TTATTACATTCCAATTCCTTACTGATGCCCCT
15879442 CAAGGAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.31, G:0.06, T:0.41
Consensus pattern (32 bp):
TTATTACATTCCAATTCCTTACTGATGCCCCT
Found at i:15879577 original size:31 final size:31
Alignment explanation
Indices: 15879539--15879600 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
15879529 AGATCCTTTC
15879539 GACGACCTGTGTTGTGTTGAAGGGATATCTA
1 GACGACCTGTGTTGTGTTGAAGGGATATCTA
15879570 GACGACCTGTGTTGTGTTGAAGGGATATCTA
1 GACGACCTGTGTTGTGTTGAAGGGATATCTA
15879601 TATGATCTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.13, G:0.32, T:0.32
Consensus pattern (31 bp):
GACGACCTGTGTTGTGTTGAAGGGATATCTA
Found at i:15879711 original size:13 final size:13
Alignment explanation
Indices: 15879695--15879721 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15879685 TATATTAGTA
15879695 TTTTCTATTCTAT
1 TTTTCTATTCTAT
15879708 TTTTCTATTCTAT
1 TTTTCTATTCTAT
15879721 T
1 T
15879722 AGTATTAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTCTATTCTAT
Found at i:15879733 original size:11 final size:11
Alignment explanation
Indices: 15879719--15879765 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
15879709 TTTCTATTCT
15879719 ATTAGTATTAG
1 ATTAGTATTAG
15879730 ATTAGTATTAG
1 ATTAGTATTAG
*
15879741 -TTAG-CTTAG
1 ATTAGTATTAG
15879750 ATTAGTATTAG
1 ATTAGTATTAG
15879761 -TTAGT
1 ATTAGT
15879766 GATCCCGGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 4 0.12
10 13 0.41
11 15 0.47
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:15879751 original size:20 final size:20
Alignment explanation
Indices: 15879726--15879764 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
15879716 TCTATTAGTA
15879726 TTAGATTAGTATTAGTTAGC
1 TTAGATTAGTATTAGTTAGC
15879746 TTAGATTAGTATTAGTTAG
1 TTAGATTAGTATTAGTTAG
15879765 TGATCCCGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.46
Consensus pattern (20 bp):
TTAGATTAGTATTAGTTAGC
Found at i:15884538 original size:29 final size:28
Alignment explanation
Indices: 15884500--15884718 Score: 88
Period size: 29 Copynumber: 7.5 Consensus size: 28
15884490 TCATCGACCA
*
15884500 ATGAATAGGGATGGCTTCAGCTATCGATT
1 ATGAAAAGGGATGG-TTCAGCTATCGATT
* * *
15884529 ATGAAAAGGGATGG-TGACGACCATCAATT
1 ATGAAAAGGGATGGTTCA-G-CTATCGATT
** * *
15884558 ATGAAAAGGGATGGGAC-GACCATCGAAGT
1 ATGAAAAGGGATGGTTCAG-CTATCG-ATT
* ** * *
15884587 ATGAAAAGGGATAGCTTTGGATATTGATT
1 ATGAAAAGGGAT-GGTTCAGCTATCGATT
* * **
15884616 ATGAAAAGGGATGGTGATGACCT-TTAATT
1 ATGAAAAGGGATGGT--TCAGCTATCGATT
* *
15884645 ATGAAAATGGG-TGG-TGATGACCATCGAATT
1 ATGAAAA-GGGATGGTTCA-G-CTATCG-ATT
* * *
15884675 ATGAAAAGGGAAAGCTTCGGCTATCGATT
1 ATGAAAAGGG-ATGGTTCAGCTATCGATT
15884704 ATGAAAAGGGATGGT
1 ATGAAAAGGGATGGT
15884719 GATGACCATT
Statistics
Matches: 141, Mismatches: 33, Indels: 33
0.68 0.16 0.16
Matches are distributed among these distances:
26 3 0.02
27 2 0.01
28 14 0.10
29 94 0.67
30 24 0.17
31 3 0.02
32 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.30, T:0.26
Consensus pattern (28 bp):
ATGAAAAGGGATGGTTCAGCTATCGATT
Found at i:15884704 original size:88 final size:87
Alignment explanation
Indices: 15884513--15884745 Score: 333
Period size: 88 Copynumber: 2.7 Consensus size: 87
15884503 AATAGGGATG
* * *
15884513 GCTTCAGCTATCGATTATGAAAAGGGATGGTGACGACCATCAATTATGAAAAGGGATGGGACGAC
1 GCTTCGGCTATCGATTATGAAAAGGGATGGTGATGACCTTCAATTATGAAAAGGGATGGGACGAC
*
15884578 CATCGAAGTATGAAAAGGGATA
66 CATCGAAGTATGAAAAGGGAAA
* * * * *
15884600 GCTTTGGATATTGATTATGAAAAGGGATGGTGATGACCTTTAATTATGAAAATGGG-TGGTGATG
1 GCTTCGGCTATCGATTATGAAAAGGGATGGTGATGACCTTCAATTATGAAAA-GGGATGG-GACG
*
15884664 ACCATCGAATTATGAAAAGGGAAA
64 ACCATCGAAGTATGAAAAGGGAAA
*
15884688 GCTTCGGCTATCGATTATGAAAAGGGATGGTGATGACCATTGAATTATGAAAAGGGAT
1 GCTTCGGCTATCGATTATGAAAAGGGATGGTGATGACC-TTCAATTATGAAAAGGGAT
15884746 AGCTTCGGCT
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
87 48 0.38
88 66 0.52
89 14 0.11
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26
Consensus pattern (87 bp):
GCTTCGGCTATCGATTATGAAAAGGGATGGTGATGACCTTCAATTATGAAAAGGGATGGGACGAC
CATCGAAGTATGAAAAGGGAAA
Found at i:15884705 original size:59 final size:60
Alignment explanation
Indices: 15884642--15884802 Score: 233
Period size: 59 Copynumber: 2.8 Consensus size: 60
15884632 ATGACCTTTA
15884642 ATTATGAAAATGGG-TGGTGATGACCATCGAATTATGAAAAGGGAAAGCTTCGGCTATCG
1 ATTATGAAAATGGGATGGTGATGACCATCGAATTATGAAAAGGGAAAGCTTCGGCTATCG
* * *
15884701 ATTATGAAAA-GGGATGGTGATGACCATTGAATTATGAAAAGGGATAGCTTCGGCTATTG
1 ATTATGAAAATGGGATGGTGATGACCATCGAATTATGAAAAGGGAAAGCTTCGGCTATCG
* *
15884760 ATTAT-AAAATGGGAAT-GTGACGACCATC-AACTATGAAAAGGGA
1 ATTATGAAAATGGG-ATGGTGATGACCATCGAATTATGAAAAGGGA
15884803 TGGTGACGAC
Statistics
Matches: 93, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
58 21 0.23
59 70 0.75
60 2 0.02
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.25
Consensus pattern (60 bp):
ATTATGAAAATGGGATGGTGATGACCATCGAATTATGAAAAGGGAAAGCTTCGGCTATCG
Found at i:15884764 original size:88 final size:88
Alignment explanation
Indices: 15884513--15884815 Score: 305
Period size: 88 Copynumber: 3.5 Consensus size: 88
15884503 AATAGGGATG
* **
15884513 GCTTCAGCTATCGATTATGAAAAGGGATGGTGACGACCA-TCAATTATGAAAAGGGATGGGACGA
1 GCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATTCAATTATGAAAAGGGATGGTTCGA
* *
15884577 CCATCGAAGTATGAAAAGGGATA
66 CCATCGAATTATGAAAAGGGAAA
* * * * *
15884600 GCTTTGGATATTGATTATGAAAAGGGATGGTGATGACC-TTTAATTATGAAAATGGG-TGGTGAT
1 GCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATTCAATTATGAAAA-GGGATGGT--T
15884663 -GACCATCGAATTATGAAAAGGGAAA
63 CGACCATCGAATTATGAAAAGGGAAA
* * *
15884688 GCTTCGGCTATCGATTATGAAAAGGGATGGTGATGACCATTGAATTATGAAAAGGGATAGCTTCG
1 GCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATTCAATTATGAAAAGGGAT-GGTTCG
* * * *
15884753 GCTATTG-ATTAT-AAAATGGGAAT
65 ACCATCGAATTATGAAAA-GGGAAA
* * * * *
15884776 G-TGACGACCATCAACTATGAAAAGGGATGGTGACGACCAT
1 GCT-TCGGCTATCGATTATGAAAAGGGATGGTGACGACCAT
15884816 CATGATTCCA
Statistics
Matches: 181, Mismatches: 25, Indels: 19
0.80 0.11 0.08
Matches are distributed among these distances:
87 53 0.29
88 107 0.59
89 19 0.10
90 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (88 bp):
GCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATTCAATTATGAAAAGGGATGGTTCGA
CCATCGAATTATGAAAAGGGAAA
Found at i:15884812 original size:29 final size:29
Alignment explanation
Indices: 15884526--15884817 Score: 211
Period size: 29 Copynumber: 10.0 Consensus size: 29
15884516 TCAGCTATCG
15884526 ATTATGAAAAGGGATGGTGACGACCATCA
1 ATTATGAAAAGGGATGGTGACGACCATCA
15884555 ATTATGAAAAGGGATGG-GACGACCATCGA
1 ATTATGAAAAGGGATGGTGACGACCATC-A
* * *** * **
15884584 AGTATGAAAAGGGATAGCTTTGGA-TATTG
1 ATTATGAAAAGGGAT-GGTGACGACCATCA
* * *
15884613 ATTATGAAAAGGGATGGTGATGACCTTTA
1 ATTATGAAAAGGGATGGTGACGACCATCA
*
15884642 ATTATGAAAATGGG-TGGTGATGACCATCGA
1 ATTATGAAAA-GGGATGGTGACGACCATC-A
* * * * * *
15884672 ATTATGAAAAGGGAAAGCT-TCGGCTATCG
1 ATTATGAAAAGGG-ATGGTGACGACCATCA
* *
15884701 ATTATGAAAAGGGATGGTGATGACCATTGA
1 ATTATGAAAAGGGATGGTGACGACCA-TCA
* * * * **
15884731 ATTATGAAAAGGGATAGCT-TCGGCTATTG
1 ATTATGAAAAGGGAT-GGTGACGACCATCA
15884760 ATTAT-AAAATGGGAAT-GTGACGACCATCA
1 ATTATGAAAA-GGG-ATGGTGACGACCATCA
*
15884789 ACTATGAAAAGGGATGGTGACGACCATCA
1 ATTATGAAAAGGGATGGTGACGACCATCA
15884818 TGATTCCACT
Statistics
Matches: 200, Mismatches: 47, Indels: 32
0.72 0.17 0.11
Matches are distributed among these distances:
28 24 0.12
29 123 0.62
30 47 0.23
31 6 0.03
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.25
Consensus pattern (29 bp):
ATTATGAAAAGGGATGGTGACGACCATCA
Found at i:15886034 original size:21 final size:20
Alignment explanation
Indices: 15885997--15886035 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15885987 CTGCAGTTTG
*
15885997 AAAAATTCTAACTTTTTCCT
1 AAAAATTCTAACGTTTTCCT
15886017 AAAAATTCTATACGTTTTC
1 AAAAATTCTA-ACGTTTTC
15886036 GATTTAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.44
Consensus pattern (20 bp):
AAAAATTCTAACGTTTTCCT
Found at i:15891734 original size:30 final size:30
Alignment explanation
Indices: 15891651--15891735 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 30
15891641 AACCATCCAT
* * *
15891651 TACAAACA-AAATTGAACCATCCATCAAAA
1 TACAAACATCAATTAAACCGTCCATCAAAA
** *
15891680 TACAAACATCAA-TAAAGTGTCCATCAAGA
1 TACAAACATCAATTAAACCGTCCATCAAAA
* *
15891709 TACAACCTTCAATTAAACCGTCCATCA
1 TACAAACATCAATTAAACCGTCCATCA
15891736 TCGAAATACA
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
29 30 0.68
30 14 0.32
ACGTcount: A:0.47, C:0.26, G:0.06, T:0.21
Consensus pattern (30 bp):
TACAAACATCAATTAAACCGTCCATCAAAA
Found at i:15894647 original size:18 final size:19
Alignment explanation
Indices: 15894614--15894654 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
15894604 CTATCCCCAC
*
15894614 ATTTAACTCTTTCATTATA
1 ATTTAACTCTTTCATTACA
*
15894633 ATTTAATTC-TTCATTACA
1 ATTTAACTCTTTCATTACA
15894651 ATTT
1 ATTT
15894655 TGTTCCCCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTAACTCTTTCATTACA
Found at i:15895238 original size:60 final size:57
Alignment explanation
Indices: 15895199--15895383 Score: 139
Period size: 56 Copynumber: 3.2 Consensus size: 57
15895189 TACATACATT
* *
15895199 AAACATGACATACATAATATACA-AACATAATAGTAATATAACACATAACAAACATAC
1 AAACAT-ACATACATAATATACATAACATAACAATAATATAACACATAACAAACATAC
* * *
15895256 AAATATACATACATAATATACATAACA-ATAC-ATAAAATAACATACAT-ACAAATATAC
1 AAACATACATACATAATATACATAACATA-ACAATAATATAAC--ACATAACAAACATAC
* * * *
15895313 AAACATAACAATAAACATAACATACAT-ATATAACAATACATA-ACATAACATAACATACATAC
1 AAACAT-AC-AT--ACATAATATACATAACATAACAATA-ATATA-A-CACATAACAAACATAC
*
15895375 AAATATACA
1 AAACATACA
15895384 AGCACAACAG
Statistics
Matches: 101, Mismatches: 13, Indels: 25
0.73 0.09 0.18
Matches are distributed among these distances:
56 25 0.25
57 24 0.24
58 6 0.06
59 2 0.02
60 5 0.05
61 23 0.23
62 16 0.16
ACGTcount: A:0.59, C:0.17, G:0.01, T:0.22
Consensus pattern (57 bp):
AAACATACATACATAATATACATAACATAACAATAATATAACACATAACAAACATAC
Found at i:15895301 original size:37 final size:36
Alignment explanation
Indices: 15895260--15895511 Score: 218
Period size: 37 Copynumber: 6.8 Consensus size: 36
15895250 ACATACAAAT
15895260 ATACATACATAATATACATAACAATACATAAA-ATAAC
1 ATACATACATAATATACA-AAC-ATACATAAACATAAC
15895297 ATACATACA-AATATACAAACATAACAATAAACATAAC
1 ATACATACATAATATACAAACAT-AC-ATAAACATAAC
15895334 ATACAT--AT-ATA-ACAATACATAACAT-AACATAAC
1 ATACATACATAATATACAA-ACAT-ACATAAACATAAC
15895367 ATACATACA-AATATACAAGCACA-ACAGTAAACATAAC
1 ATACATACATAATATACAA--ACATACA-TAAACATAAC
*
15895404 ATACATACA-AATATACAAACATAACAGTAAACATATC
1 ATACATACATAATATACAAACAT-ACA-TAAACATAAC
* * * * *
15895441 ATCCACATATAACAATACATAACATAATAGTAAACATAAC
1 ATACATACATAA-TATACA-AACAT-ACA-TAAACATAAC
*
15895481 ATACATACATAACAATACATAACATACATAA
1 ATACATACATAA-TATACA-AACATACATAA
15895512 TATACATAAC
Statistics
Matches: 186, Mismatches: 12, Indels: 33
0.81 0.05 0.14
Matches are distributed among these distances:
33 14 0.08
34 8 0.04
35 26 0.14
36 18 0.10
37 68 0.37
38 5 0.03
39 7 0.04
40 40 0.22
ACGTcount: A:0.58, C:0.19, G:0.02, T:0.21
Consensus pattern (36 bp):
ATACATACATAATATACAAACATACATAAACATAAC
Found at i:15895315 original size:65 final size:66
Alignment explanation
Indices: 15895190--15895517 Score: 216
Period size: 70 Copynumber: 4.9 Consensus size: 66
15895180 CACATAATAT
* * * *
15895190 ACAT-ACATTAAACATGACATACATA-ATATACAA-ACATAATAGTAATATAAC--AC--ATA-A
1 ACATAACAATAAACATAACATACATATATA-ACAATACATAA-AATAACATAACATACAAATATA
15895247 CAA
64 CAA
*
15895250 ACAT-ACAAATATACAT-ACATA-ATATACATAACAATACATAAAATAACAT-ACATACAAATAT
1 ACATAAC-AATAAACATAACATACATAT--ATAACAATACATAAAATAACATAACATACAAATAT
15895311 ACAA
63 ACAA
*
15895315 ACATAACAATAAACATAACATACATATATAACAATACATAACATAACATAACATACATACAAATA
1 ACATAACAATAAACATAACATACATATATAACAATACATAAAATAACAT---A-ACATACAAATA
15895380 TACAA
62 TACAA
* * * * * * * *
15895385 GCACAACAGTAAACATAACATACATACAAATATACAA-ACATAACAGTAAACATATCATCCACAT
1 ACATAACAATAAACATAACATACAT--ATATA-ACAATACATAA-AAT-AACATAACATACAAAT
15895449 ATAACAA
61 AT-ACAA
* * *
15895456 TACATAACATAATAGTAAACATAACATACATACATAACAATACATAACAT-ACATAATATACA
1 -ACATAAC---A-A-TAAACATAACATACATATATAACAATACATAAAATAACATAACATACA
15895518 TAACAATTTA
Statistics
Matches: 213, Mismatches: 24, Indels: 50
0.74 0.08 0.17
Matches are distributed among these distances:
59 3 0.01
60 13 0.06
61 17 0.08
62 11 0.05
64 3 0.01
65 37 0.17
66 7 0.03
67 4 0.02
70 47 0.22
71 5 0.02
72 24 0.11
73 5 0.02
74 10 0.05
75 11 0.05
77 16 0.08
ACGTcount: A:0.58, C:0.19, G:0.02, T:0.22
Consensus pattern (66 bp):
ACATAACAATAAACATAACATACATATATAACAATACATAAAATAACATAACATACAAATATACA
A
Found at i:15895375 original size:70 final size:70
Alignment explanation
Indices: 15895285--15895538 Score: 282
Period size: 70 Copynumber: 3.5 Consensus size: 70
15895275 ACATAACAAT
* * *
15895285 ACATAAAATAACATACATACAAATATACAAACATAACAATAAACATAACATACATATATAACAAT
1 ACATAACATAACATACATACAAATATACAAACATAACAGTAAACATAACATACATAAATAACAAT
15895350 ACATA
66 ACATA
* *
15895355 ACATAACATAACATACATACAAATATACAAGCACAACAGTAAACATAACATACATACAAATATAC
1 ACATAACATAACATACATACAAATATACAAACATAACAGTAAACATAACATACAT--AAATA-AC
15895420 AA-ACATA
63 AATACATA
* * * *
15895427 ACAGTAAACATATCATCCACATATAACA-ATACATAACATAATAGTAAACATAACATACATACAT
1 ACA-T-AACATAACAT--ACATACAA-ATATACA-AACATAACAGTAAACATAACATACATAAAT
15895491 AACAATACATA
60 AACAATACATA
* * *
15895502 ACAT-ACATAATATACATA-ACAATTTAAAAACATAACA
1 ACATAACATAACATACATACA-AATATACAAACATAACA
15895539 TACATACATA
Statistics
Matches: 156, Mismatches: 16, Indels: 25
0.79 0.08 0.13
Matches are distributed among these distances:
69 10 0.06
70 60 0.38
72 19 0.12
73 5 0.03
74 14 0.09
75 12 0.08
76 12 0.08
77 24 0.15
ACGTcount: A:0.58, C:0.19, G:0.02, T:0.21
Consensus pattern (70 bp):
ACATAACATAACATACATACAAATATACAAACATAACAGTAAACATAACATACATAAATAACAAT
ACATA
Found at i:15895414 original size:107 final size:107
Alignment explanation
Indices: 15895234--15895510 Score: 333
Period size: 107 Copynumber: 2.6 Consensus size: 107
15895224 CATAATAGTA
*
15895234 ATATAACACATAACA-AACAT-ACA-AATATACATACATAATATACATAACAATACATAAAATAA
1 ATATAACA-AT-ACATAACATAACATAACATACATACATAATATACATAACAATACATAAAATAA
*
15895296 CATACATACAAATATACAAACATAACAATAAACATAACATACAT
64 CATACATACAAATATACAAACATAACAATAAACATAACATACAC
*
15895340 ATATAACAATACATAACATAACATAACATACATACA-AATATACA-AGCACA-ACAGTAAACATA
1 ATATAACAATACATAACATAACATAACATACATACATAATATACATAACA-ATACA-TAAA-ATA
* * *
15895402 ACATACATACAAATATACAAACATAACAGTAAACATATCATCCAC
63 ACATACATACAAATATACAAACATAACAATAAACATAACATACAC
* * *
15895447 ATATAACAATACATAACATAATAGT-A-A-ACATAACAT-ACATACATAACAATACATAACAT-A
1 ATATAACAATACATAACATAACA-TAACATACAT-ACATAATATACATAACAATACATAAAATAA
15895507 CATA
64 CATA
15895511 ATATACATAA
Statistics
Matches: 150, Mismatches: 10, Indels: 24
0.82 0.05 0.13
Matches are distributed among these distances:
104 8 0.05
105 19 0.13
106 38 0.25
107 84 0.56
108 1 0.01
ACGTcount: A:0.58, C:0.19, G:0.01, T:0.21
Consensus pattern (107 bp):
ATATAACAATACATAACATAACATAACATACATACATAATATACATAACAATACATAAAATAACA
TACATACAAATATACAAACATAACAATAAACATAACATACAC
Found at i:15895474 original size:40 final size:39
Alignment explanation
Indices: 15895324--15895506 Score: 167
Period size: 40 Copynumber: 4.9 Consensus size: 39
15895314 AACATAACAA
*
15895324 TAAACATAACATACATATATAACAATACATAACATAACA-
1 TAAACATAACAT-CACATATAACAATACATAACATAACAG
* * *
15895363 T-AACAT-ACAT-AC--A-AA-TATACA-AGCACAACAG
1 TAAACATAACATCACATATAACAATACATAACATAACAG
*
15895394 TAAACATAACAT-ACATACAA-ATATACA-AACATAACAG
1 TAAACATAACATCACATATAACA-ATACATAACATAACAG
* *
15895431 TAAACATATCATCCACATATAACAATACATAACATAATAG
1 TAAACATAACAT-CACATATAACAATACATAACATAACAG
15895471 TAAACATAACAT-ACATACATAACAATACATAACATA
1 TAAACATAACATCACAT--ATAACAATACATAACATA
15895507 CATAATATAC
Statistics
Matches: 120, Mismatches: 11, Indels: 25
0.77 0.07 0.16
Matches are distributed among these distances:
30 7 0.06
31 6 0.05
32 7 0.06
33 7 0.06
35 2 0.02
36 2 0.02
37 28 0.23
38 9 0.08
39 13 0.11
40 39 0.32
ACGTcount: A:0.57, C:0.20, G:0.02, T:0.21
Consensus pattern (39 bp):
TAAACATAACATCACATATAACAATACATAACATAACAG
Found at i:15895490 original size:30 final size:27
Alignment explanation
Indices: 15895449--15895578 Score: 86
Period size: 30 Copynumber: 4.4 Consensus size: 27
15895439 TCATCCACAT
15895449 ATAACAATACATAACATAATAGTAAACATAAC
1 ATAAC-ATACATAACA-AATA--AAACAT-AC
15895481 AT-ACATACATAAC-AATACATAACATAC
1 ATAACATACATAACAAATA-A-AACATAC
* *
15895508 ATAATATACATAACAATTTAAAAACATAAC
1 ATAACATACATAACAA-AT-AAAACAT-AC
*
15895538 AT-ACATACATAAACAATAAAGAAACATAC
1 ATAACATACAT-AACAA-ATA-AAACATAC
*
15895567 ATAACAGACATA
1 ATAACATACATA
15895579 CCTTTCACCC
Statistics
Matches: 82, Mismatches: 7, Indels: 21
0.75 0.06 0.19
Matches are distributed among these distances:
27 5 0.06
28 19 0.23
29 19 0.23
30 34 0.41
31 3 0.04
32 2 0.02
ACGTcount: A:0.59, C:0.17, G:0.02, T:0.22
Consensus pattern (27 bp):
ATAACATACATAACAAATAAAACATAC
Found at i:15896176 original size:16 final size:16
Alignment explanation
Indices: 15896155--15896201 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
15896145 GTTTTCTTTC
15896155 AGATGAAGAATTGTTT
1 AGATGAAGAATTGTTT
* *
15896171 AGATGAAAAATCGTTT
1 AGATGAAGAATTGTTT
15896187 AGATGAAGAATTGTT
1 AGATGAAGAATTGTT
15896202 CATATTTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.40, C:0.02, G:0.23, T:0.34
Consensus pattern (16 bp):
AGATGAAGAATTGTTT
Found at i:15900181 original size:37 final size:37
Alignment explanation
Indices: 15900094--15900184 Score: 114
Period size: 37 Copynumber: 2.5 Consensus size: 37
15900084 AGTGATTATC
* * *
15900094 TTAATATTAAATGTAATTTAATATTTATCTTATAGAT
1 TTAATATTAAATTTAATCTAATATTTATCTGATAGAT
15900131 TTAATATTAAATTTAATCTAATATTTATCTAGATA-AT
1 TTAATATTAAATTTAATCTAATATTTATCT-GATAGAT
*
15900168 TATTATATT-AATTTAAT
1 T-TAATATTAAATTTAAT
15900185 ATTAAAGTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
37 39 0.81
38 9 0.19
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (37 bp):
TTAATATTAAATTTAATCTAATATTTATCTGATAGAT
Found at i:15909869 original size:16 final size:16
Alignment explanation
Indices: 15909850--15909882 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15909840 ATTAATTTAA
15909850 TATTAAA-TCGATTATC
1 TATTAAAGT-GATTATC
15909866 TATTAAAGTGATTATC
1 TATTAAAGTGATTATC
15909882 T
1 T
15909883 TAATACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.45
Consensus pattern (16 bp):
TATTAAAGTGATTATC
Found at i:15920354 original size:26 final size:25
Alignment explanation
Indices: 15920315--15920382 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 25
15920305 CCATATCGGA
* *
15920315 AAGCTCCGATGAGCCATTAATTAGG
1 AAGCTCCAAAGAGCCATTAATTAGG
15920340 AAGCTCACAAAGAG-CATTTAATTAGG
1 AAGCTC-CAAAGAGCCA-TTAATTAGG
*
15920366 AAGCTCCGAAGAGCCAT
1 AAGCTCCAAAGAGCCAT
15920383 ATTTCGGGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 15 0.41
26 22 0.59
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (25 bp):
AAGCTCCAAAGAGCCATTAATTAGG
Found at i:15920526 original size:25 final size:25
Alignment explanation
Indices: 15920484--15920531 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
15920474 CTCGCAGGAA
* *
15920484 CCATATAACGGGAAGCTCGAGAGGG
1 CCATATAACGAGAAGCTCAAGAGGG
* *
15920509 CCATATATCGAGATGCTCAAGAG
1 CCATATAACGAGAAGCTCAAGAG
15920532 AGCTAATAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (25 bp):
CCATATAACGAGAAGCTCAAGAGGG
Found at i:15927964 original size:61 final size:61
Alignment explanation
Indices: 15927890--15928028 Score: 188
Period size: 61 Copynumber: 2.3 Consensus size: 61
15927880 TGGAGTTTTC
* *
15927890 CCACAAAGGCATTCTTTAACATTCAGTAGTCACCACAAAGCCTTTCATGTCCAAAGTATTA
1 CCACAAAGGCATTCCTTAACATTCAGTACTCACCACAAAGCCTTTCATGTCCAAAGTATTA
* * ** * * *
15927951 CCACAAAGGCATTCCTTAACATTCAGTACTCGCCACAGAGGTTTTCGTGTCCAGAGTATTG
1 CCACAAAGGCATTCCTTAACATTCAGTACTCACCACAAAGCCTTTCATGTCCAAAGTATTA
*
15928012 CCACAAAGGTATTCCTT
1 CCACAAAGGCATTCCTT
15928029 CCACTGGTTA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 68 1.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (61 bp):
CCACAAAGGCATTCCTTAACATTCAGTACTCACCACAAAGCCTTTCATGTCCAAAGTATTA
Found at i:15931981 original size:42 final size:43
Alignment explanation
Indices: 15931900--15931992 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 43
15931890 CCCAGATGTA
* * *
15931900 GTCTTACATGTAATCAAATATCGATGCCACTGTCGCAGACAGG
1 GTCTTACAGGAAATCAAATATCGATGCCACTATCGCAGACAGG
* * *
15931943 GTCTTACAGGAAATCATATA-CGATGCCGA-TATCTCAGACATG
1 GTCTTACAGGAAATCAAATATCGATGCC-ACTATCGCAGACAGG
*
15931985 TTCTTACA
1 GTCTTACA
15931993 CGTAAATCTC
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 24 0.57
43 18 0.43
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (43 bp):
GTCTTACAGGAAATCAAATATCGATGCCACTATCGCAGACAGG
Found at i:15937935 original size:74 final size:74
Alignment explanation
Indices: 15937814--15937986 Score: 249
Period size: 74 Copynumber: 2.3 Consensus size: 74
15937804 AGTTTACTGT
*
15937814 ATGGTACGTAGCTTCATAAATAAACGAGGTGATATGGTGACAGGTTAT-CTATTTCAGACCTTTA
1 ATGGTACGTAGCTTCATAAATAAACGAGGGGATATGGTGACAGGTTATGC-ATTTCAGACCTTTA
15937878 GAGTAAACAC
65 GAGTAAACAC
* * * * *
15937888 ATGGTACGCAACTTCATAAATAAACTAGGGGATATGGTGACTGGTTATGCATTTCAGACTTTTAG
1 ATGGTACGTAGCTTCATAAATAAACGAGGGGATATGGTGACAGGTTATGCATTTCAGACCTTTAG
* *
15937953 AGTAGACGC
66 AGTAAACAC
*
15937962 ATGGTATGTAGCTTCATAAATAAAC
1 ATGGTACGTAGCTTCATAAATAAAC
15937987 CGTGGAAAGA
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
74 86 0.99
75 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (74 bp):
ATGGTACGTAGCTTCATAAATAAACGAGGGGATATGGTGACAGGTTATGCATTTCAGACCTTTAG
AGTAAACAC
Found at i:15938489 original size:26 final size:27
Alignment explanation
Indices: 15938453--15938505 Score: 81
Period size: 26 Copynumber: 1.9 Consensus size: 27
15938443 TCGGAAATAC
15938453 ATTTTAAAAATAA-AAAATAAAAAAGT
1 ATTTTAAAAATAATAAAATAAAAAAGT
15938479 ATTTTAAAAATAATTTAAAATAAAAAA
1 ATTTTAAAAATAA--TAAAATAAAAAA
15938506 ATAAAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 13 0.54
29 11 0.46
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (27 bp):
ATTTTAAAAATAATAAAATAAAAAAGT
Found at i:15938514 original size:9 final size:8
Alignment explanation
Indices: 15938495--15938529 Score: 61
Period size: 8 Copynumber: 4.2 Consensus size: 8
15938485 AAAATAATTT
15938495 AAAATAAA
1 AAAATAAA
15938503 AAAATAAA
1 AAAATAAA
15938511 AAAATAAAA
1 AAAAT-AAA
15938520 AAAATAAA
1 AAAATAAA
15938528 AA
1 AA
15938530 TATTTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 18 0.69
9 8 0.31
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAATAAA
Found at i:15938514 original size:16 final size:17
Alignment explanation
Indices: 15938495--15938529 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
15938485 AAAATAATTT
15938495 AAAAT-AAAAAAATAAA
1 AAAATAAAAAAAATAAA
15938511 AAAATAAAAAAAATAAA
1 AAAATAAAAAAAATAAA
15938528 AA
1 AA
15938530 TATTTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAATAAAAAAAATAAA
Found at i:15938547 original size:13 final size:13
Alignment explanation
Indices: 15938529--15938555 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15938519 AAAAATAAAA
15938529 ATATTTATTATAT
1 ATATTTATTATAT
15938542 ATATTTATTATAT
1 ATATTTATTATAT
15938555 A
1 A
15938556 AATACTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATATTTATTATAT
Found at i:15940273 original size:27 final size:27
Alignment explanation
Indices: 15940229--15940287 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
15940219 CTAACGAGAT
*
15940229 AAGAATATTGGTTCAACAATTAATGTA
1 AAGAATATTGATTCAACAATTAATGTA
*
15940256 AAGAATATTGATTGAACAATTAATGTA
1 AAGAATATTGATTCAACAATTAATGTA
15940283 AAGAA
1 AAGAA
15940288 GTTTTAATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.31
Consensus pattern (27 bp):
AAGAATATTGATTCAACAATTAATGTA
Found at i:15941233 original size:24 final size:25
Alignment explanation
Indices: 15941201--15941253 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
15941191 AAAGCTAAAA
*
15941201 TTTTGGATAAAATGGAAATTTA-CT
1 TTTTGGATAAAATGGAAACTTATCT
* *
15941225 TTTTTGATAAATTGGAAACTTATCT
1 TTTTGGATAAAATGGAAACTTATCT
15941250 TTTT
1 TTTT
15941254 CTTCAATAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.49
Consensus pattern (25 bp):
TTTTGGATAAAATGGAAACTTATCT
Found at i:15943810 original size:25 final size:23
Alignment explanation
Indices: 15943765--15943826 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 23
15943755 GGCTCTTATG
*
15943765 AGCTTCCCGTTATACAGCTCAGATA
1 AGCTTCCCG-T-TACAGCTCACATA
*
15943790 AGCTTCCCGTTACATGTCTCACTTA
1 AGCTTCCCGTTACA-G-CTCACATA
*
15943815 AGCTTCCTGTTA
1 AGCTTCCCGTTA
15943827 TATGACTCGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 4 0.12
24 2 0.06
25 26 0.81
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.34
Consensus pattern (23 bp):
AGCTTCCCGTTACAGCTCACATA
Found at i:15945586 original size:3 final size:3
Alignment explanation
Indices: 15945578--15945638 Score: 61
Period size: 3 Copynumber: 19.3 Consensus size: 3
15945568 ATTATATTTG
* *
15945578 TAT TAT TAT TGT TAT TAT TAT TATT TATT TAT CTAG T-T TATT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TA-T TAT -TAT TAT TA-T TAT TAT
15945626 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
15945639 TATTCGGTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
2 1 0.02
3 37 0.74
4 12 0.24
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:15946308 original size:106 final size:109
Alignment explanation
Indices: 15946116--15946312 Score: 283
Period size: 106 Copynumber: 1.8 Consensus size: 109
15946106 TTTCTAATTG
* *
15946116 AGGCAATATTTAGAGTTTGAAAATTCGAGATAACATGCCCTAAGGTGCTGGGTGTCGGTTTTTCT
1 AGGCAATATTTAGAGTTTGAAAATTCGAGAGAACATGCCCTAAGGTGCTGGGTGTCGGTATTTCT
*
15946181 CGTTCAATCAAATAGCTAAATATCCTTTCAAAAATTACAGAATA
66 CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTACAGAATA
* * * * *
15946225 AGGCAATTTTTTGCGTTTGAAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTTC-G-ATTTCT
1 AGGCAATATTTAGAGTTTGAAAATTCGAGAGAACATGCCCTAAGGTGCTGGGTGTCGGTATTTCT
* *
15946287 CGTTTAACCAAATTGCTAAATATCCT
66 CGTTCAACCAAATAGCTAAATATCCT
15946313 CTTGAATTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
106 28 0.36
107 1 0.01
108 23 0.29
109 26 0.33
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (109 bp):
AGGCAATATTTAGAGTTTGAAAATTCGAGAGAACATGCCCTAAGGTGCTGGGTGTCGGTATTTCT
CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTACAGAATA
Found at i:15950438 original size:24 final size:26
Alignment explanation
Indices: 15950384--15950440 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
15950374 ACATTCATTT
*
15950384 ATTAAAACATACTTATGAAAGAAATA
1 ATTAAAACATACTTATGAAAGAAAAA
*
15950410 ATTAAAGCATAC-T-TGAAA-AAAAA
1 ATTAAAACATACTTATGAAAGAAAAA
15950433 ATTTAAAA
1 A-TTAAAA
15950441 GTTTGAGCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 5 0.19
24 10 0.37
25 1 0.04
26 11 0.41
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (26 bp):
ATTAAAACATACTTATGAAAGAAAAA
Found at i:15952533 original size:21 final size:20
Alignment explanation
Indices: 15952509--15952551 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
15952499 CTCCTTTATT
*
15952509 AACATAAAAAATTAAAATTTA
1 AACAGAAAAAA-TAAAATTTA
* *
15952530 AACAGAATAAATGAAATTTA
1 AACAGAAAAAATAAAATTTA
15952550 AA
1 AA
15952552 AAAAAGTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.26
Consensus pattern (20 bp):
AACAGAAAAAATAAAATTTA
Found at i:15954289 original size:46 final size:43
Alignment explanation
Indices: 15954216--15954319 Score: 120
Period size: 46 Copynumber: 2.3 Consensus size: 43
15954206 TTCTATGTGA
*
15954216 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAAT-CC
* *
15954259 ACCGGATATCATTGATTACAAAGGGTGGTTGTTATGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGAATCC
15954305 ACCGTGTATCTATTA
1 ACCG-GTATC-ATTA
15954320 TTATTCCGGT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
43 5 0.10
44 11 0.22
45 2 0.04
46 27 0.53
47 6 0.12
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCC
Found at i:15959646 original size:39 final size:39
Alignment explanation
Indices: 15959592--15959721 Score: 154
Period size: 39 Copynumber: 3.3 Consensus size: 39
15959582 AACATGTTTT
* * *
15959592 TGAGTATTTTAATATATTCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATTCTTAAATGTTATGTGATAATA
* ***
15959631 TGAGTATTGTGATATATGCTTAAATGTTATGTGACGGTA
1 TGAGTATTGTGATATATTCTTAAATGTTATGTGATAATA
*
15959670 TGAGTATTGTGATATATGT-TTGAATGTTATGTGATAATA
1 TGAGTATTGTGATATAT-TCTTAAATGTTATGTGATAATA
* *
15959709 TGTGTAATGTGAT
1 TGAGTATTGTGAT
15959722 TCATGCTTAA
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.30, C:0.02, G:0.22, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATTCTTAAATGTTATGTGATAATA
Found at i:15959717 original size:22 final size:22
Alignment explanation
Indices: 15959677--15959718 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
15959667 GTATGAGTAT
*
15959677 TGTGATATATGTTTGAATGTTA
1 TGTGATATATGTGTGAATGTTA
15959699 TGTGATAATATGTGT-AATGT
1 TGTGAT-ATATGTGTGAATGT
15959719 GATTCATGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.48
Consensus pattern (22 bp):
TGTGATATATGTGTGAATGTTA
Found at i:15962306 original size:463 final size:463
Alignment explanation
Indices: 15960374--15962307 Score: 2644
Period size: 464 Copynumber: 4.2 Consensus size: 463
15960364 TGAGATAGTT
* * * * * *
15960374 AGAAGGGAGCTTGATCGAAGCCCCTGTGAACA-GCTGCCGTAACTATAACGGTCCTAAGGTAGCA
1 AGAAGGGAGTTTGACCGAAGCCCCGGTGAA-AGGCGGCCGTAACTATAATGGTCCTAAGGTAGCG
** * ** * * * *
15960438 AAATTATTTAT-TGGTAAGTTCTGACCTACACGAAAGGCGTAATGATTTGGGCACTATCTCGGAG
65 AAATTCCTTATCGGGTAAGTTCTGACCCGCACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAG
** * * * * * * * * *
15960502 AGAGGCTCAGTGAGATAGACATGTCTGTGAAGATGTAGACTACCTGCACCTGGACTGAGAG-TCG
130 AGAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCAGACTACCCGCACTTGGACAGAAAGACCA
* * * *
15960566 TATGAAACTTCACTGTTCCCTAGGATTGGCTTTGGGCTTTTCCTACGCAGCTTAGGTGGAAGGC-
195 TATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGCAGCTTATGTGGAAGGCG
* * * *
15960630 AATGAAGGCCTCCTTCCAGGGGGCCAGAGCCATGAGTGAGATACCACTCTGGAAGAGCTAGAATT
260 AA-GAAGGCCACCTTCCAGGGGGCCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATT
** **
15960695 CTA-ACCTTGTGTCAGGACCTACAAGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGT
324 CTAGA-CTTGTGTCAAAACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGT
* * * *
15960759 AAGCCTCCAAAAAGGTAATGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATT-GACCCTC
388 AGGCCTCCCAAAAGGTAATGGAGGCATGCAAAGGTTTCCTCGGGCCGAACGGAGATTAG-CCCTC
* *
15960823 GAGTGTAAAGGT
452 GAGTGCAAAGGC
* * * * * ** * * * **
15960835 AAAAGGGAGCTTGACTGAAGCCCCGATGAACGAAGACCGTAACTGTAACGGTCCTAAGGTAGTAA
1 AGAAGGGAGTTTGACCGAAGCCCCGGTGAAAGGCGGCCGTAACTATAATGGTCCTAAGGTAGCGA
* * * * *
15960900 AATTCCTTGTCGGGTAAGTTCTGACCCGCACGACAGTCGTAACAATCTGGGCACAGTCTCGGAGA
66 AATTCCTTATCGGGTAAGTTCTGACCCGCACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAGA
* *
15960965 GAGGCTTGGTGAAATAAAAATGTCTGTGAAGATGCAGACTACCCGTACTTGGACAGAAAGACCAT
131 GAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCAGACTACCCGCACTTGGACAGAAAGACCAT
*
15961030 ATGAAGCTTCACTGTTCCCAGGGATTGGCTTTGGGCTTTTCCTGCGCAGCTTATGTGGAAGGCGA
196 ATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGCAGCTTATGTGGAAGGCGA
**
15961095 AGAAGGCCACCTTCTGGGGGGGCCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATTC
261 AGAAGGCCACCTTC-CAGGGGGCCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATTC
* *
15961160 TAGACTTGTGTCAAAACTTACGGGCCAAGGGACAGTCTCAGGTAGATAGTTTCTATGGGGCGTAG
325 TAGACTTGTGTCAAAACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAG
* * * **
15961225 GCCTCCCAAAAGGTAATGGAGGCATACAAAGGTTTTCTCGGGCCGAATGGAGATTAGCGTTCGAG
390 GCCTCCCAAAAGGTAATGGAGGCATGCAAAGGTTTCCTCGGGCCGAACGGAGATTAGCCCTCGAG
15961290 TGCAAAGGC
455 TGCAAAGGC
* * *
15961299 AGAAGGGTGTTTGACCGAAGCCCCAGG-GAAAGGCGGCCGTAACTATAATGGTCCTAAGCTTGCG
1 AGAAGGGAGTTTGACCGAAGCCCC-GGTGAAAGGCGGCCGTAACTATAATGGTCCTAAGGTAGCG
** * *
15961363 AAATTTATTACCGGGTAAGTTCTGACCCGCACGAAGGCCGTAACGATCTGGGCACTGTCTCGGAG
65 AAATTCCTTATCGGGTAAGTTCTGACCCGCACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAG
*
15961428 AGAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCGGACTACCCGCACTTGGACAGAAAGACCA
130 AGAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCAGACTACCCGCACTTGGACAGAAAGACCA
* *
15961493 TATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGACTTTTCCTGCGCAGCTTATGTAGAAGGCG
195 TATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGCAGCTTATGTGGAAGGCG
* *
15961558 AAGAAGGCCACCTTCCGGGTGGGGCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATT
260 AAGAAGGCCACCTTCCAGG-GGGCCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATT
*
15961623 CTAGACTTGTGTCAAAACTTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTA
324 CTAGACTTGTGTCAAAACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTA
* * **
15961688 GGCCTCCCAAAAGGTAATGGAGGCA-GACAAAGGTTTTCTCGGGCCGAATGGAGATTAGCGTTCG
389 GGCCTCCCAAAAGGTAATGGAGGCATG-CAAAGGTTTCCTCGGGCCGAACGGAGATTAGCCCTCG
15961752 AGTGCAAAGGC
453 AGTGCAAAGGC
* * * * *
15961763 AGAAGGGTGTTTGACCGAAGCCCCGGGGAAAGGCGGTCGTAACTATAATGGTCCTAAGCTTGCGA
1 AGAAGGGAGTTTGACCGAAGCCCCGGTGAAAGGCGGCCGTAACTATAATGGTCCTAAGGTAGCGA
* * *
15961828 AATTTCTTATCGGGTAAGTTCTGACCCGCACGAAAGCCATAACGATCTAGGCACTGTCTCGGAGA
66 AATTCCTTATCGGGTAAGTTCTGACCCGCACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAGA
* *
15961893 GAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCGGACTACCCGCACTTGGACAAAAAGACCAT
131 GAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCAGACTACCCGCACTTGGACAGAAAGACCAT
* * * *
15961958 ATGAAGCTTCACTGTTCCCTGGGATTGGTTTTAGGCTTTTCCTGTGTAGCTTATGTGGAAGGCGA
196 ATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGCAGCTTATGTGGAAGGCGA
* * * * **
15962023 AGAAGGCCTCCTTCTAGGGGGCCAGAGCCATGAGTGAGATACCACTCGGGAAGAGCTAGAATTCT
261 AGAAGGCCACCTTCCAGGGGGCCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATTCT
* * *
15962088 A-ACCTTGTGTTAAGACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCATAG
326 AGA-CTTGTGTCAAAACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAG
*
15962152 GCCTCCCAAAAGGTAACGGAGGCATGCAAAGGTTTCCTCGGGCCGAACGGAGATTAGCCCTCGAG
390 GCCTCCCAAAAGGTAATGGAGGCATGCAAAGGTTTCCTCGGGCCGAACGGAGATTAGCCCTCGAG
15962217 TGCAAAGGC
455 TGCAAAGGC
* ** * *
15962226 AGAAGGAAGTTTGACTAAAGCCCCGGTGAAAGGCGGTCGTAACTATAATGGTCCTAAGGTAGCTA
1 AGAAGGGAGTTTGACCGAAGCCCCGGTGAAAGGCGGCCGTAACTATAATGGTCCTAAGGTAGCGA
*
15962291 AATTCCTTGTCGGGTAA
66 AATTCCTTATCGGGTAA
15962308 TGTAACAGCC
Statistics
Matches: 1320, Mismatches: 140, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
461 59 0.04
462 94 0.07
463 316 0.24
464 848 0.64
465 3 0.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (463 bp):
AGAAGGGAGTTTGACCGAAGCCCCGGTGAAAGGCGGCCGTAACTATAATGGTCCTAAGGTAGCGA
AATTCCTTATCGGGTAAGTTCTGACCCGCACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAGA
GAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCAGACTACCCGCACTTGGACAGAAAGACCAT
ATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGCAGCTTATGTGGAAGGCGA
AGAAGGCCACCTTCCAGGGGGCCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATTCT
AGACTTGTGTCAAAACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGG
CCTCCCAAAAGGTAATGGAGGCATGCAAAGGTTTCCTCGGGCCGAACGGAGATTAGCCCTCGAGT
GCAAAGGC
Found at i:15962454 original size:13 final size:11
Alignment explanation
Indices: 15962414--15962457 Score: 61
Period size: 11 Copynumber: 3.7 Consensus size: 11
15962404 CAAATTCACG
15962414 GAAAGATTTCGT
1 GAAA-ATTTCGT
15962426 GAAAATTTCGT
1 GAAAATTTCGT
15962437 GAAAATTTCGTTT
1 GAAAATTTCG--T
15962450 GAAAATTT
1 GAAAATTT
15962458 TTACGTTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.57
12 4 0.13
13 9 0.30
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (11 bp):
GAAAATTTCGT
Found at i:15963704 original size:48 final size:48
Alignment explanation
Indices: 15963633--15963839 Score: 245
Period size: 48 Copynumber: 4.3 Consensus size: 48
15963623 TACTATGCGT
* *
15963633 ACCGATAATCTGTTATGACACAAGGGTGGCACGTACCGTGTGCAGGCC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * *
15963681 ACCGATATTCTGTTGTGACACAAGGGCGGCACGGACTGTGTGCAGGCC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * * * *
15963729 ACCAATAA-CTTGTTAAGATACAAGGGTGGCACGGACTATGTCCAGGCC
1 ACCGATAATC-TGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * * * *
15963777 ACCGAGAATCTATTATTACACAAAGGTGGTACGGACTGTGTGCAGGCC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
*
15963825 ACCGAGAAATCTGTT
1 ACCGA-TAATCTGTT
15963840 TTTATTCCGA
Statistics
Matches: 131, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
47 1 0.01
48 122 0.93
49 8 0.06
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (48 bp):
ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
Found at i:15966477 original size:21 final size:22
Alignment explanation
Indices: 15966451--15966494 Score: 81
Period size: 21 Copynumber: 2.0 Consensus size: 22
15966441 AAGAAAGTTA
15966451 AAAATTTATATTAATT-ATTTT
1 AAAATTTATATTAATTAATTTT
15966472 AAAATTTATATTAATTAATTTT
1 AAAATTTATATTAATTAATTTT
15966494 A
1 A
15966495 TTTAATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
AAAATTTATATTAATTAATTTT
Found at i:15969743 original size:19 final size:22
Alignment explanation
Indices: 15969719--15969803 Score: 81
Period size: 23 Copynumber: 3.9 Consensus size: 22
15969709 ACCTTACTTT
15969719 TATTTATTTTT-TTATT-TT-A
1 TATTTATTTTTATTATTATTAA
15969738 TATTTATTTTTATTATTATTAA
1 TATTTATTTTTATTATTATTAA
*
15969760 TATTTTATTCATTTATTACTTATT-G
1 TA-TTTATT--TTTATTA-TTATTAA
*
15969785 T-TTTATTTTTCTTATTATT
1 TATTTATTTTTATTATTATT
15969804 CTTAGCTTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
19 11 0.19
20 10 0.18
21 8 0.14
22 3 0.05
23 12 0.21
25 8 0.14
26 5 0.09
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.72
Consensus pattern (22 bp):
TATTTATTTTTATTATTATTAA
Found at i:15982063 original size:2 final size:2
Alignment explanation
Indices: 15982056--15982099 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
15982046 TAAGTTAGTG
15982056 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15982098 AT
1 AT
15982100 TACAATTCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15982709 original size:27 final size:27
Alignment explanation
Indices: 15982679--15982730 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
15982669 AAGGCTGAAG
*
15982679 GTGGTGCCAATGAGAATGGCGGCACCA
1 GTGGTACCAATGAGAATGGCGGCACCA
15982706 GTGGTACCAATGAGAATGGCGGCAC
1 GTGGTACCAATGAGAATGGCGGCAC
15982731 AGGACTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.27, C:0.21, G:0.37, T:0.15
Consensus pattern (27 bp):
GTGGTACCAATGAGAATGGCGGCACCA
Found at i:15983269 original size:28 final size:26
Alignment explanation
Indices: 15983229--15983303 Score: 123
Period size: 28 Copynumber: 2.8 Consensus size: 26
15983219 GCCTTCTTTT
15983229 TTTTTTTGGTATATTTTGGTAAATAATA
1 TTTTTTTGGTATATTTTGGTAAAT-A-A
*
15983257 TTTTTTTGATATATTTTGGTAAATAA
1 TTTTTTTGGTATATTTTGGTAAATAA
15983283 TTTTTTTGGTATATTTTGGTA
1 TTTTTTTGGTATATTTTGGTA
15983304 TATTTTTATT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 21 0.47
27 1 0.02
28 23 0.51
ACGTcount: A:0.25, C:0.00, G:0.15, T:0.60
Consensus pattern (26 bp):
TTTTTTTGGTATATTTTGGTAAATAA
Found at i:15984583 original size:44 final size:44
Alignment explanation
Indices: 15984523--15984621 Score: 171
Period size: 44 Copynumber: 2.2 Consensus size: 44
15984513 AACAACCTCC
* *
15984523 TTTCTTTCTCTTTTCTTCTCTTCCTCTAATTATTCTTGTTCCCT
1 TTTCTTTCTCCTTTCTTCCCTTCCTCTAATTATTCTTGTTCCCT
*
15984567 TTTCTTTCTCCTTTCTTCCCTTCCTCTAATTCTTCTTGTTCCCT
1 TTTCTTTCTCCTTTCTTCCCTTCCTCTAATTATTCTTGTTCCCT
15984611 TTTCTTTCTCC
1 TTTCTTTCTCC
15984622 CCTTATTTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.05, C:0.33, G:0.02, T:0.60
Consensus pattern (44 bp):
TTTCTTTCTCCTTTCTTCCCTTCCTCTAATTATTCTTGTTCCCT
Found at i:15985365 original size:19 final size:19
Alignment explanation
Indices: 15985341--15985380 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
15985331 AAAAATTATA
15985341 ATTATTTATAATCGAAACC
1 ATTATTTATAATCGAAACC
15985360 ATTATTTATAATCGAAACC
1 ATTATTTATAATCGAAACC
15985379 AT
1 AT
15985381 GTTAGAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (19 bp):
ATTATTTATAATCGAAACC
Found at i:15987378 original size:25 final size:24
Alignment explanation
Indices: 15987293--15987408 Score: 81
Period size: 25 Copynumber: 4.7 Consensus size: 24
15987283 GTACATGTAT
* * * *
15987293 GCTCATACGAGCTCAGAATCGGTAT
1 GCTCATACGAGCTGA-AAACAGTAA
* * **
15987318 GCTCTTACGAGCTGTAAATGGTAA
1 GCTCATACGAGCTGAAAACAGTAA
* *
15987342 GCTCCTCCGAGCTGAATAACAGTAA
1 GCTCATACGAGCTGAA-AACAGTAA
**
15987367 GCTCATGA-GAGCTGAGAATTAGTAA
1 GCTCAT-ACGAGCTGA-AAACAGTAA
15987392 GCTCATACGAGCTGAAA
1 GCTCATACGAGCTGAAA
15987409 TCGGTAACCT
Statistics
Matches: 72, Mismatches: 15, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
24 22 0.31
25 49 0.68
26 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (24 bp):
GCTCATACGAGCTGAAAACAGTAA
Found at i:15987866 original size:28 final size:28
Alignment explanation
Indices: 15987834--15987892 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
15987824 TCCTTACCCA
*
15987834 AGCCTAGCCGATCTTTATACATATTAAT
1 AGCCTAGCCGATCGTTATACATATTAAT
15987862 AGCCTAGCCGATCGTTATACATATTAAT
1 AGCCTAGCCGATCGTTATACATATTAAT
15987890 AGC
1 AGC
15987893 AGTCCATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (28 bp):
AGCCTAGCCGATCGTTATACATATTAAT
Found at i:15989831 original size:6 final size:6
Alignment explanation
Indices: 15989820--15989846 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15989810 GTATTTTGCT
15989820 ATTAAA ATTAAA ATTAAA ATTAAA ATT
1 ATTAAA ATTAAA ATTAAA ATTAAA ATT
15989847 TCAAAAATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (6 bp):
ATTAAA
Found at i:15996660 original size:2 final size:2
Alignment explanation
Indices: 15996653--15996684 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
15996643 AAACGAATCA
15996653 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15996685 GTTATTATGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15996944 original size:26 final size:26
Alignment explanation
Indices: 15996913--15997005 Score: 132
Period size: 26 Copynumber: 3.6 Consensus size: 26
15996903 TATTCTGACC
*
15996913 CACAGCTCGTGTGAGTAGGCCCATTT
1 CACAGCTCGTGTGAGCAGGCCCATTT
*
15996939 CACAGCCCGTGTGAGCAGGCCCATTT
1 CACAGCTCGTGTGAGCAGGCCCATTT
* * **
15996965 CCCTGCTCGTGTGAGCAAACCCATTT
1 CACAGCTCGTGTGAGCAGGCCCATTT
15996991 CACAGCTCGTGTGAG
1 CACAGCTCGTGTGAG
15997006 AAACCATGTA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 58 1.00
ACGTcount: A:0.19, C:0.31, G:0.26, T:0.24
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAGGCCCATTT
Found at i:16028437 original size:85 final size:84
Alignment explanation
Indices: 16028280--16028490 Score: 224
Period size: 85 Copynumber: 2.5 Consensus size: 84
16028270 TTATTTTGAA
* * * * ** *
16028280 AATATGTTTTGCACTCACAACAAGTGGTAGTAACTGTAAATATGTGACTCGTCCACAAACTTAGT
1 AATATGTTGTGCACTCACAACAAGTGGCAGTAACTGCAAATATGTGACTCATCCACAAACCCAAT
*
16028345 TGTAGTTTGTTTAATCTAC
66 TGCAGTTTGTTTAATCTAC
* * * * ** *
16028364 GAATATATTGTGCACTCACAATAAGTGGCAGTGACTGCAAATATGTGGCTCATTGACAAGCCCAA
1 -AATATGTTGTGCACTCACAACAAGTGGCAGTAACTGCAAATATGTGACTCATCCACAAACCCAA
* *
16028429 TTGCAGTTTTTTTAATCTGC
65 TTGCAGTTTGTTTAATCTAC
* * *
16028449 AACTATGTTGTGCACTGACAACAAGTGACAGTAATTGCAAAT
1 AA-TATGTTGTGCACTCACAACAAGTGGCAGTAACTGCAAAT
16028491 GTTTTTATCT
Statistics
Matches: 102, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
84 2 0.02
85 100 0.98
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (84 bp):
AATATGTTGTGCACTCACAACAAGTGGCAGTAACTGCAAATATGTGACTCATCCACAAACCCAAT
TGCAGTTTGTTTAATCTAC
Found at i:16033596 original size:2 final size:2
Alignment explanation
Indices: 16033589--16033623 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
16033579 GTTATATTTC
16033589 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16033624 CATGCATATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:16033661 original size:18 final size:17
Alignment explanation
Indices: 16033638--16033672 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16033628 CATATGGTAC
*
16033638 CATTTCATATAATCATTT
1 CATTTCAAAT-ATCATTT
16033656 CATTTCAAATATCATTT
1 CATTTCAAATATCATTT
16033673 ATCAAGTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (17 bp):
CATTTCAAATATCATTT
Found at i:16039265 original size:21 final size:19
Alignment explanation
Indices: 16039234--16039273 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
16039224 TTAATTTCTA
16039234 TTTAGTTTAATAAGTTTTC
1 TTTAGTTTAATAAGTTTTC
*
16039253 TTTAGATTGTAATAATTTTTC
1 TTTAG-TT-TAATAAGTTTTC
16039274 AGTTGTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 2 0.11
21 11 0.61
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.57
Consensus pattern (19 bp):
TTTAGTTTAATAAGTTTTC
Found at i:16044258 original size:25 final size:25
Alignment explanation
Indices: 16044230--16044291 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
16044220 CATCTCGTAT
* *
16044230 GAGCTTATTGTTTTTCAACTCAGAG
1 GAGCTTATCGTTATTCAACTCAGAG
* *
16044255 GAGCTTATCGTTATTCAGCTCGGAG
1 GAGCTTATCGTTATTCAACTCAGAG
*
16044280 GAGCTTACCGTT
1 GAGCTTATCGTT
16044292 TACAGCTCGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.35
Consensus pattern (25 bp):
GAGCTTATCGTTATTCAACTCAGAG
Found at i:16044307 original size:24 final size:25
Alignment explanation
Indices: 16044252--16044300 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
16044242 TTTCAACTCA
* *
16044252 GAGGAGCTTATCGTTATTCAGCTCG
1 GAGGAGCTTACCGTTATACAGCTCG
16044277 GAGGAGCTTACCGTT-TACAGCTCG
1 GAGGAGCTTACCGTTATACAGCTCG
16044301 TATGAGCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (25 bp):
GAGGAGCTTACCGTTATACAGCTCG
Found at i:16044478 original size:26 final size:26
Alignment explanation
Indices: 16044449--16044500 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
16044439 CATAGGTAAT
*
16044449 TACATGAGATATATGA-AAATGATTTG
1 TACACGAGATATA-GATAAATGATTTG
* *
16044475 TACACGATATATAGATACATGATTTG
1 TACACGAGATATAGATAAATGATTTG
16044501 GAAATTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (26 bp):
TACACGAGATATAGATAAATGATTTG
Found at i:16047782 original size:18 final size:18
Alignment explanation
Indices: 16047759--16047793 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
16047749 CTAGAACAAG
16047759 AAGCATAAAAATAGTTTC
1 AAGCATAAAAATAGTTTC
*
16047777 AAGCATGAAAATAGTTT
1 AAGCATAAAAATAGTTT
16047794 GGCACATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGCATAAAAATAGTTTC
Found at i:16054100 original size:23 final size:23
Alignment explanation
Indices: 16054050--16054101 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
16054040 AGTGGTAAAA
*
16054050 TGTTAGCTTACCTTGAGGTCTCG
1 TGTTTGCTTACCTTGAGGTCTCG
*
16054073 TGTTTGCTTGCCTTGAGGTCTCG
1 TGTTTGCTTACCTTGAGGTCTCG
16054096 TGTTTG
1 TGTTTG
16054102 AACCCCCGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.08, C:0.19, G:0.29, T:0.44
Consensus pattern (23 bp):
TGTTTGCTTACCTTGAGGTCTCG
Found at i:16059501 original size:33 final size:33
Alignment explanation
Indices: 16059459--16059524 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
16059449 GGAAATAAGA
16059459 TGTATCGGGATCTTCGTGAGTTGTATTGGTGGT
1 TGTATCGGGATCTTCGTGAGTTGTATTGGTGGT
16059492 TGTATCGGGATCTTCGTGAGTTGTATTGGTGGT
1 TGTATCGGGATCTTCGTGAGTTGTATTGGTGGT
16059525 CGGGGTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.12, C:0.09, G:0.36, T:0.42
Consensus pattern (33 bp):
TGTATCGGGATCTTCGTGAGTTGTATTGGTGGT
Found at i:16061535 original size:26 final size:26
Alignment explanation
Indices: 16061506--16061556 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16061496 TAGTTGTTGT
* * *
16061506 TTTCGTCGTCTGTAAGTTTGTGTGCA
1 TTTCATCGTCGGTAAGTTCGTGTGCA
16061532 TTTCATCGTCGGTAAGTTCGTGTGC
1 TTTCATCGTCGGTAAGTTCGTGTGC
16061557 GTTGTTAGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.12, C:0.18, G:0.27, T:0.43
Consensus pattern (26 bp):
TTTCATCGTCGGTAAGTTCGTGTGCA
Found at i:16082967 original size:35 final size:35
Alignment explanation
Indices: 16082921--16083013 Score: 132
Period size: 35 Copynumber: 2.6 Consensus size: 35
16082911 GGTTGGATTT
*
16082921 GCTCTTATGAGCATTGGTGTGTCGCGGATGGACTA
1 GCTCTTATGAGCATTGGTGTGTCGCAGATGGACTA
** *
16082956 GCTCTTATGAGCATTGGTGTGTTTCAGATGGATTA
1 GCTCTTATGAGCATTGGTGTGTCGCAGATGGACTA
*
16082991 TCTCTTATGAGCATCTGGTGTGT
1 GCTCTTATGAGCAT-TGGTGTGT
16083014 TTTGGTTGGA
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
35 44 0.85
36 8 0.15
ACGTcount: A:0.17, C:0.15, G:0.30, T:0.38
Consensus pattern (35 bp):
GCTCTTATGAGCATTGGTGTGTCGCAGATGGACTA
Found at i:16086345 original size:12 final size:12
Alignment explanation
Indices: 16086324--16086360 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
16086314 ACTTAATCAC
16086324 TTTAATATTAAA
1 TTTAATATTAAA
*
16086336 TTTAAGATTAAA
1 TTTAATATTAAA
16086348 TTTAATATTAAA
1 TTTAATATTAAA
16086360 T
1 T
16086361 CTTATTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:16087832 original size:33 final size:33
Alignment explanation
Indices: 16087788--16088086 Score: 135
Period size: 33 Copynumber: 8.4 Consensus size: 33
16087778 ATAGGTGGAT
* *
16087788 TCAGCAGTTAGCAACCACCAGTGATTCGGGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
* *
16087821 TCAGCACTTAGCAACCCATCTCACATTTAAGATACGGTGGGA
1 TCAGCACTTAGCAA-CCA-C-CA-A--T--GATTCGG-GGAA
* *
16087863 TCAGCACTTAGGAACCACCAATGAGTCGGGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
* * * *
16087896 TTAGCACTTAGCAACCCCCCTCACATTTAAAATACGGTGGAA
1 TCAGCACTTAGCAA--CCAC-CA-A--T--GATTCGG-GGAA
* * *
16087938 TCAGCACCTAGCAACCACCAATGAGTCAGGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
16087971 TCAGCACTTAGCAACC-CC-----TT-GGGAGAA
1 TCAGCACTTAGCAACCACCAATGATTCGGG-GAA
* * * *
16087998 TCAGCACTTACCAACGCCCTTCACATTTAAAATACGGTGGAA
1 TCAGCACTTAGCAAC-CAC--CA-A--T--GATTCGG-GGAA
16088040 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
*
16088073 TCAACACTTAGCAA
1 TCAGCACTTAGCAA
16088087 TCCCTTGGGG
Statistics
Matches: 200, Mismatches: 31, Indels: 70
0.66 0.10 0.23
Matches are distributed among these distances:
26 2 0.01
27 18 0.09
28 1 0.00
29 1 0.00
31 1 0.00
32 2 0.01
33 64 0.32
34 16 0.08
35 4 0.02
36 7 0.04
37 1 0.00
38 3 0.01
39 8 0.04
40 4 0.02
41 16 0.08
42 51 0.25
43 1 0.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (33 bp):
TCAGCACTTAGCAACCACCAATGATTCGGGGAA
Found at i:16087988 original size:75 final size:75
Alignment explanation
Indices: 16087781--16087988 Score: 308
Period size: 75 Copynumber: 2.8 Consensus size: 75
16087771 GTCCGTTATA
* * * * **
16087781 GGTGGATTCAGCAGTTAGCAACCACCAGTGATTCGGGGAATCAGCACTTAGCAACCCATCTCACA
1 GGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCCTCACA
*
16087846 TTTAAGATAC
66 TTTAAAATAC
* * *
16087856 GGTGGGATCAGCACTTAGGAACCACCAATGAGTCGGGGAATTAGCACTTAGCAACCCCCCTCACA
1 GGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCCTCACA
16087921 TTTAAAATAC
66 TTTAAAATAC
* *
16087931 GGTGGAATCAGCACCTAGCAACCACCAATGAGTCAGGGAATCAGCACTTAGCAACCCC
1 GGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
16087989 TTGGGAGAAT
Statistics
Matches: 118, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 118 1.00
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (75 bp):
GGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCCTCACA
TTTAAAATAC
Found at i:16088044 original size:102 final size:102
Alignment explanation
Indices: 16087893--16088120 Score: 366
Period size: 102 Copynumber: 2.2 Consensus size: 102
16087883 ATGAGTCGGG
* *
16087893 GAATTAGCACTTAGCAACCCCCCTCACATTTAAAATACGGTGGAATCAGCACCTAGCAACCACCA
1 GAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACCTAGCAACCACCA
*
16087958 ATGAGTCAGGGAATCAGCACTTAGCAACCCCTTGGGA
66 ATGAGTCAGGGAATCAACACTTAGCAACCCCTTGGGA
* * *
16087995 GAATCAGCACTTACCAACGCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACCA
1 GAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACCTAGCAACCACCA
* * * *
16088060 ATGATTCGGGGAATCAACACTTAGCAATCCCTTGGGG
66 ATGAGTCAGGGAATCAACACTTAGCAACCCCTTGGGA
16088097 GAATCAGCACTTAGCAACCCCCTT
1 GAATCAGCACTTAGCAACCCCCTT
16088121 TATATTCAAT
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 114 1.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.20
Consensus pattern (102 bp):
GAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACCTAGCAACCACCA
ATGAGTCAGGGAATCAACACTTAGCAACCCCTTGGGA
Found at i:16095317 original size:33 final size:33
Alignment explanation
Indices: 16095262--16095529 Score: 188
Period size: 33 Copynumber: 7.7 Consensus size: 33
16095252 TTGTCCGTTA
* *
16095262 TCGGTGGATTCAGCACTTAGCAACCACCAGTGAT
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
* *
16095296 TCGGGGAATCAACACTTAGCAACCCCTTTCACATTTAAGAT
1 TCGGGGAATCAGCACTTAGCAACCAC---CA-A--T--GAT
** * *
16095337 AAGGTGGGATCAGCACTTAGCAACCACCAATGAG
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
*
16095371 TCGGGGAATCAGTACTTAGCAACC-CC--T--T
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAT
*
16095399 T-GGGGAATCAGCACTTAGCAACCACCAATGAG
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAT
* *
16095431 TCGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAAT
1 TCGGGGAATCAGCACTTAGCAA-CCAC--CA-A--T--GAT
* *
16095472 ATGGGGGAATCAACACTTAGCAACCACCAATGAT
1 -TCGGGGAATCAGCACTTAGCAACCACCAATGAT
*
16095506 TCAGGGAATCAGCACTTAGCAACC
1 TCGGGGAATCAGCACTTAGCAACC
16095530 CCCTTTATAT
Statistics
Matches: 183, Mismatches: 27, Indels: 49
0.71 0.10 0.19
Matches are distributed among these distances:
27 21 0.11
28 3 0.02
30 2 0.01
32 3 0.02
33 78 0.43
34 13 0.07
36 6 0.03
37 1 0.01
38 2 0.01
39 6 0.03
41 9 0.05
42 39 0.21
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (33 bp):
TCGGGGAATCAGCACTTAGCAACCACCAATGAT
Found at i:16095513 original size:135 final size:135
Alignment explanation
Indices: 16095271--16095531 Score: 416
Period size: 135 Copynumber: 1.9 Consensus size: 135
16095261 ATCGGTGGAT
* * * *
16095271 TCAGCACTTAGCAACCACCAGTGATTCGGGGAATCAACACTTAGCAACCCCTTTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAA
* * *
16095336 TAAGGTGGGATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGTACTTAGCAACCCCTTTG
66 TAAGGTGGGATCAACACTTAGCAACCACCAATGAGTCAGGGAATCAGCACTTAGCAACCCCTTTG
16095401 GGGAA
131 GGGAA
*
16095406 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAA
* *
16095471 TATGG-GGGAATCAACACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCC
66 TAAGGTGGG-ATCAACACTTAGCAACCACCAATGAGTCAGGGAATCAGCACTTAGCAACCCC
16095532 CTTTATATTC
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
134 3 0.03
135 112 0.97
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.20
Consensus pattern (135 bp):
TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAA
TAAGGTGGGATCAACACTTAGCAACCACCAATGAGTCAGGGAATCAGCACTTAGCAACCCCTTTG
GGGAA
Found at i:16104095 original size:23 final size:23
Alignment explanation
Indices: 16104064--16104119 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
16104054 GCCTATAGAA
*
16104064 ACTTCTGTTACTAGTACTACGAT
1 ACTTATGTTACTAGTACTACGAT
* * *
16104087 ACTTATGTTATTAGTACTTCGGT
1 ACTTATGTTACTAGTACTACGAT
*
16104110 ACTTTTGTTA
1 ACTTATGTTA
16104120 ATGACACTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.46
Consensus pattern (23 bp):
ACTTATGTTACTAGTACTACGAT
Found at i:16107975 original size:50 final size:50
Alignment explanation
Indices: 16107908--16108145 Score: 269
Period size: 50 Copynumber: 4.6 Consensus size: 50
16107898 ACTACCAATT
* * ** * * * * *
16107908 CCATATCCCAGATATGGTCTTACATGGGAGTTCTAATATCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACG
* *
16107958 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGCTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACG
16108008 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACG
* * *
16108058 CCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAATCTCAATAATTATGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC------GATGCCAACG
16108117 CCATGTCCCAGACATGGTCTTACATGGGA
1 CCATGTCCCAGACATGGTCTTACATGGGA
16108146 TCTCATTCCC
Statistics
Matches: 163, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
50 122 0.75
53 5 0.03
59 36 0.22
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACG
Found at i:16114652 original size:26 final size:26
Alignment explanation
Indices: 16114622--16114683 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
16114612 ACATATTTTC
*
16114622 TCAAAATTTTA-CTAGAGGCAAAATCG
1 TCAAAATTTTACCAAG-GGCAAAATCG
* *
16114648 TCAAAATTTTACCAAGGGTAAAATTG
1 TCAAAATTTTACCAAGGGCAAAATCG
16114674 TCAAAATTTT
1 TCAAAATTTT
16114684 GCTGGGGTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 29 0.91
27 3 0.09
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (26 bp):
TCAAAATTTTACCAAGGGCAAAATCG
Found at i:16115289 original size:43 final size:43
Alignment explanation
Indices: 16115239--16115324 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
16115229 AACACAAATA
16115239 CAATTTCGGTTAAGGTTTATTGCTATAAATATCACAAATTAGG
1 CAATTTCGGTTAAGGTTTATTGCTATAAATATCACAAATTAGG
16115282 CAATTTCGGTTAAGGTTTATTGCTATAAATATCACAAATTAGG
1 CAATTTCGGTTAAGGTTTATTGCTATAAATATCACAAATTAGG
16115325 TCATTTTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (43 bp):
CAATTTCGGTTAAGGTTTATTGCTATAAATATCACAAATTAGG
Found at i:16119796 original size:26 final size:26
Alignment explanation
Indices: 16119767--16119817 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16119757 GGTTTAAATT
* * *
16119767 CTTACAAAATTAAAACTAGAGATTAC
1 CTTAAAAAACTAAAACTAGAAATTAC
*
16119793 CTTAAAAAACTAAAATTAGAAATTA
1 CTTAAAAAACTAAAACTAGAAATTA
16119818 AATTCATATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (26 bp):
CTTAAAAAACTAAAACTAGAAATTAC
Found at i:16120194 original size:16 final size:17
Alignment explanation
Indices: 16120173--16120204 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
16120163 GAATTTTTGC
16120173 TGTTAAATTT-TATAAT
1 TGTTAAATTTATATAAT
16120189 TGTTAAATTTATATAA
1 TGTTAAATTTATATAA
16120205 AAATTTATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (17 bp):
TGTTAAATTTATATAAT
Found at i:16121869 original size:21 final size:21
Alignment explanation
Indices: 16121845--16121886 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
16121835 AGTTCTTTTA
16121845 AATTTAAGATATTTAAAAAAT
1 AATTTAAGATATTTAAAAAAT
* * *
16121866 AATTTAATATTTTTATAAAAT
1 AATTTAAGATATTTAAAAAAT
16121887 TTTAAAATCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
AATTTAAGATATTTAAAAAAT
Found at i:16121903 original size:15 final size:15
Alignment explanation
Indices: 16121883--16121920 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
16121873 TATTTTTATA
16121883 AAATTTTAAAATCC-T
1 AAATTTTAAAA-CCAT
*
16121898 AAATTTTGAAACCAT
1 AAATTTTAAAACCAT
16121913 AAATTTTA
1 AAATTTTA
16121921 GTCTCAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 2 0.10
15 18 0.90
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (15 bp):
AAATTTTAAAACCAT
Found at i:16122271 original size:7 final size:8
Alignment explanation
Indices: 16122255--16122286 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
16122245 ATTTTTAAAA
16122255 TTATTTTT
1 TTATTTTT
16122263 TTATTTTT
1 TTATTTTT
16122271 TTATTTTT
1 TTATTTTT
16122279 TTATTTTT
1 TTATTTTT
16122287 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTATTTTT
Found at i:16127565 original size:13 final size:13
Alignment explanation
Indices: 16127547--16127571 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16127537 ACATGAGCAT
16127547 GTGGACCACACGG
1 GTGGACCACACGG
16127560 GTGGACCACACG
1 GTGGACCACACG
16127572 CCCCCTTCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.32, G:0.36, T:0.08
Consensus pattern (13 bp):
GTGGACCACACGG
Found at i:16128232 original size:90 final size:90
Alignment explanation
Indices: 16128079--16128347 Score: 349
Period size: 90 Copynumber: 3.0 Consensus size: 90
16128069 AATTAATAAT
* ** * * * * *
16128079 CTGCAACTCTGGTGGTTCATCCACAGATTATCTGGCAGTTTTTATCTACAAATATGTTGTGCATT
1 CTGCAACACTGGTGGTTCATCCACCCATTTTCTGACAGCTCTTATCTACAATTATGTTGTGCATT
*
16128144 CACAACCATCTAGCAGCATATTAAC
66 CACAACCATCTAGCAACATATTAAC
* * * *
16128169 CTGCAACACTGGTGGTTCATCCACCCATTTTCTGACAGCTCTTATATGCAATTTTGTTGTGCATC
1 CTGCAACACTGGTGGTTCATCCACCCATTTTCTGACAGCTCTTATCTACAATTATGTTGTGCATT
*
16128234 CACAACCATCTGGCAACATATTAAC
66 CACAACCATCTAGCAACATATTAAC
* ** * *
16128259 CTGCAACATTGGTGGTTCATCCACCCACATTCTGACAGCTCTCATCTACAATTATGTTGTGCACT
1 CTGCAACACTGGTGGTTCATCCACCCATTTTCTGACAGCTCTTATCTACAATTATGTTGTGCATT
* *
16128324 CACAACCATCTGGCAACGTATTAA
66 CACAACCATCTAGCAACATATTAA
16128348 ACTGTAACTT
Statistics
Matches: 155, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
90 155 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (90 bp):
CTGCAACACTGGTGGTTCATCCACCCATTTTCTGACAGCTCTTATCTACAATTATGTTGTGCATT
CACAACCATCTAGCAACATATTAAC
Found at i:16128521 original size:6 final size:6
Alignment explanation
Indices: 16128510--16128545 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
16128500 TTTTGAGATG
16128510 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
16128546 TGTAGAGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ATACAT
Found at i:16136785 original size:3 final size:3
Alignment explanation
Indices: 16136777--16136831 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
16136767 ATAATTCGAG
16136777 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
16136825 TTA TTA T
1 TTA TTA T
16136832 CTAAATTCTG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:16143094 original size:25 final size:26
Alignment explanation
Indices: 16143036--16143094 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
16143026 TTGTATGATT
*
16143036 ATACAAGC-ATGTAAGCGGGAAGCTC
1 ATACAAGCTAAGTAAGCGGGAAGCTC
***
16143061 ATGTGAGCTAAGTAA-CGGGAAGCTC
1 ATACAAGCTAAGTAAGCGGGAAGCTC
16143086 ATACAAGCT
1 ATACAAGCT
16143095 GTATATTAGG
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.19
Consensus pattern (26 bp):
ATACAAGCTAAGTAAGCGGGAAGCTC
Found at i:16144504 original size:25 final size:26
Alignment explanation
Indices: 16144445--16144513 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 26
16144435 GATTCATTGC
* *
16144445 AAAGGTTTTCCAAA-AATTTACCACA
1 AAAGCTTTTCCAAAGAATTTACCAAA
* *
16144470 AAGGCTTTTCCAAAGAATTTTCCAAA
1 AAAGCTTTTCCAAAGAATTTACCAAA
*
16144496 AAAGC-TTTCCAGAGAATT
1 AAAGCTTTTCCAAAGAATT
16144514 CGCCATAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
25 24 0.65
26 13 0.35
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.29
Consensus pattern (26 bp):
AAAGCTTTTCCAAAGAATTTACCAAA
Found at i:16144598 original size:51 final size:50
Alignment explanation
Indices: 16144449--16144598 Score: 142
Period size: 51 Copynumber: 3.0 Consensus size: 50
16144439 CATTGCAAAG
* * *
16144449 GTTTTCCAAA-AATTTACCACAAAGGCTTTTCCAAAGAATTTTC-CAAAAAA
1 GTTTTCCAAAGAATTTGCCACAAAGGCTTTT-TAGAGAATTTTCAC-AAAAA
* * * * * * *
16144499 GCTTTCCAGAGAATTCGCCATAAAAGCCTTTTAGAGAATTATTGACAAAAA
1 GTTTTCCAAAGAATTTGCCACAAAGGCTTTTTAGAGAATT-TTCACAAAAA
* *
16144550 GTTTTCTAAAGAATTTGCCAGAAAGGCTTTTTAGAGAATTTGTCACAAA
1 GTTTTCCAAAGAATTTGCCACAAAGGCTTTTTAGAGAATTT-TCACAAA
16144599 GGCTTTTCAG
Statistics
Matches: 78, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
50 16 0.21
51 61 0.78
52 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (50 bp):
GTTTTCCAAAGAATTTGCCACAAAGGCTTTTTAGAGAATTTTCACAAAAA
Found at i:16144613 original size:24 final size:25
Alignment explanation
Indices: 16144459--16144613 Score: 102
Period size: 25 Copynumber: 6.2 Consensus size: 25
16144449 GTTTTCCAAA
* *
16144459 AATTTACCACAAAGGCTTTTCCAAAG
1 AATTTGCCACAAAGGCTTTT-CAGAG
* * * *
16144485 AATTTTCCAAAAAAGCTTTCCAGAG
1 AATTTGCCACAAAGGCTTTTCAGAG
* * *
16144510 AATTCGCCATAAAAGCCTTTT-AGAG
1 AATTTGCCA-CAAAGGCTTTTCAGAG
* * *
16144535 AATTATTGACA-AAAAG-TTTTCTAAAG
1 AA-T-TTGCCACAAAGGCTTTTC-AGAG
* *
16144561 AATTTGCCAGAAAGGCTTTTTAGAG
1 AATTTGCCACAAAGGCTTTTCAGAG
*
16144586 AATTTGTCACAAAGGCTTTTCAGA-
1 AATTTGCCACAAAGGCTTTTCAGAG
16144610 AATT
1 AATT
16144614 CGTGTTTATT
Statistics
Matches: 100, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
24 13 0.13
25 49 0.49
26 34 0.34
27 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (25 bp):
AATTTGCCACAAAGGCTTTTCAGAG
Found at i:16146218 original size:22 final size:22
Alignment explanation
Indices: 16146153--16146218 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
16146143 TTTTAAAATA
*
16146153 AATTTATATTTTATTAGTTTTAT
1 AATTTATATTTTATT-TTTTTAT
*
16146176 -ATTTATATTTTATAGTTTTTAT
1 AATTTATATTTTAT-TTTTTTAT
16146198 AATTT-TATTTTATTTTATTTA
1 AATTTATATTTTATTTT-TTTA
16146219 ATAAAAATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
21 2 0.05
22 31 0.84
23 4 0.11
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (22 bp):
AATTTATATTTTATTTTTTTAT
Found at i:16146275 original size:25 final size:26
Alignment explanation
Indices: 16146240--16146295 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
16146230 TAAATTATAT
*
16146240 TATTTTCATAATTATGTAATTTTT-AA
1 TATTTTCATAATTAT-AAATTTTTGAA
16146266 TATTTT-ATAATTATAAATTTTTGAA
1 TATTTTCATAATTATAAATTTTTGAA
16146291 TATTT
1 TATTT
16146296 AAAATAATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 7 0.25
25 15 0.54
26 6 0.21
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.59
Consensus pattern (26 bp):
TATTTTCATAATTATAAATTTTTGAA
Found at i:16146762 original size:7 final size:7
Alignment explanation
Indices: 16146750--16146776 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
16146740 TATAGTAATA
16146750 TAAAATT
1 TAAAATT
16146757 TAAAATT
1 TAAAATT
16146764 TAAAATT
1 TAAAATT
16146771 TAAAAT
1 TAAAAT
16146777 ACAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
TAAAATT
Found at i:16149283 original size:33 final size:33
Alignment explanation
Indices: 16149238--16149316 Score: 124
Period size: 33 Copynumber: 2.4 Consensus size: 33
16149228 AGTTTGTTCC
*
16149238 AAGTTTGTTCCAATGAATCT-AATTGAAATTACA
1 AAGTTTGTTCCAATAAATCTAAATT-AAATTACA
*
16149271 AATTTTGTTCCAATAAATCTAAATTAAATTACA
1 AAGTTTGTTCCAATAAATCTAAATTAAATTACA
16149304 AAGTTTGTTCCAA
1 AAGTTTGTTCCAA
16149317 GTTTGATGCA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
33 38 0.90
34 4 0.10
ACGTcount: A:0.41, C:0.13, G:0.09, T:0.38
Consensus pattern (33 bp):
AAGTTTGTTCCAATAAATCTAAATTAAATTACA
Found at i:16151604 original size:26 final size:28
Alignment explanation
Indices: 16151575--16151634 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
16151565 TCAAAACACC
*
16151575 TAAATGCAATACAATAA-AT-ATTACAA
1 TAAATACAATACAATAATATCATTACAA
* *
16151601 TAAATATAGTACAATAATATCATTACAA
1 TAAATACAATACAATAATATCATTACAA
16151629 -AAATAC
1 TAAATAC
16151635 TAAACATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 14 0.50
27 7 0.25
28 7 0.25
ACGTcount: A:0.57, C:0.12, G:0.03, T:0.28
Consensus pattern (28 bp):
TAAATACAATACAATAATATCATTACAA
Found at i:16151615 original size:14 final size:12
Alignment explanation
Indices: 16151584--16151633 Score: 57
Period size: 12 Copynumber: 3.9 Consensus size: 12
16151574 CTAAATGCAA
16151584 TACAATAAATAT
1 TACAATAAATAT
16151596 TACAATAAATAT
1 TACAATAAATAT
16151608 AGTACAATAATATCAT
1 --TACAATAA-AT-AT
16151624 TACAA-AAATA
1 TACAATAAATA
16151634 CTAAACATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
11 1 0.03
12 14 0.41
13 2 0.06
14 13 0.38
15 2 0.06
16 2 0.06
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.30
Consensus pattern (12 bp):
TACAATAAATAT
Found at i:16152067 original size:42 final size:42
Alignment explanation
Indices: 16151979--16152067 Score: 96
Period size: 39 Copynumber: 2.2 Consensus size: 42
16151969 TCAAAATCTC
* ***
16151979 AATAAATAAAAAACATTTGTCAAATAATTCAAAAAAAAACCC
1 AATAAATAAAAAACATTTGTCAAATAATTAAAAAAAAAAAAA
* *
16152021 AATAAAT-AAAAA-A-TTGTCAAATAATTAAAAAACAACAAA
1 AATAAATAAAAAACATTTGTCAAATAATTAAAAAAAAAAAAA
16152060 AA-AAATAA
1 AATAAATAA
16152068 CATTTATAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
38 4 0.10
39 23 0.57
40 1 0.03
41 5 0.12
42 7 0.17
ACGTcount: A:0.67, C:0.10, G:0.02, T:0.20
Consensus pattern (42 bp):
AATAAATAAAAAACATTTGTCAAATAATTAAAAAAAAAAAAA
Found at i:16152275 original size:32 final size:32
Alignment explanation
Indices: 16152204--16152274 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 32
16152194 TCTTTTTACC
*
16152204 CTTTTTTTAAACCCTAAACAAAACCCTTTAAT
1 CTTTTTTTAAACCCTAAACAAAACCCTCTAAT
* * *
16152236 ATATTTTT-AACCCTAAACAAATCCC-CTAAT
1 CTTTTTTTAAACCCTAAACAAAACCCTCTAAT
16152266 CTCTTTTTT
1 CT-TTTTTT
16152275 TCCAAACCCT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
30 5 0.16
31 21 0.66
32 6 0.19
ACGTcount: A:0.34, C:0.25, G:0.00, T:0.41
Consensus pattern (32 bp):
CTTTTTTTAAACCCTAAACAAAACCCTCTAAT
Found at i:16153093 original size:23 final size:24
Alignment explanation
Indices: 16153053--16153098 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
16153043 TTCACCCTAA
16153053 TTTTTCAGTTTTCTTTTT-TTTTC
1 TTTTTCAGTTTTCTTTTTGTTTTC
*
16153076 TTTTTCA-TTTTGTATTTTGTTTT
1 TTTTTCAGTTTTCT-TTTTGTTTT
16153099 GTATTTGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 11 0.55
24 4 0.20
ACGTcount: A:0.07, C:0.09, G:0.07, T:0.78
Consensus pattern (24 bp):
TTTTTCAGTTTTCTTTTTGTTTTC
Found at i:16153440 original size:380 final size:379
Alignment explanation
Indices: 16152653--16153798 Score: 1838
Period size: 380 Copynumber: 3.0 Consensus size: 379
16152643 GACACATAGC
*
16152653 CTTCACCCTAATTTTTTAGTTTTCCTTTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTTG
1 CTTCACCCTAATTTTTCAGTTTT-CTTTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTTG
*
16152718 TACTCGGGTTGGGTATTCGGGTTTTTTAATGCCGCC-ATCAACAAGGCT-ACATCATTAA-TTTT
65 TACTCGGGTTGGGTATTCGGGTTTTTTAATGCCGCCTATCAACAAGGCTGA-ACCATTAATTTTT
16152780 TTTAACTAAATCCGACGGGTGTGAGAAAATAGAGGTGGTGCTGCCTCTGCACCACCCTCCACCAC
129 TTTAACTAAATCCGACGGGTGTGAGAAAAT--A-G-GG-G-TG-----GCACCACCCTCCACCAC
* *
16152845 CCTTGGTATACCATTTTCGTAAATAATTCAGTTCGCATATTATTTTAGATATTTTTAAATTTTTT
183 CCTTGGTATACCATTTTCGTAAATAATTCAGCTCGTATATTATTTTAGATATTTTTAAATTTTTT
*
16152910 ATATTATATATGTAAAAAAGCCACTAACTTACAAGTTGCTCAAAATACTAGTAAGGCATTTCACC
248 ATATTATATATGTAAAAAAGCCACTAACTTACAAGTTGCTCAAAATACTAGTAAGACATTTCACC
*
16152975 AAAAAATAAATACTAATAAGACAAAAATCATAGAATAAATACGGCCTTGCAATGGAATTGCAAAC
313 AAAAAATAAATACTAATAAGACAAAAATCATAGAATAAATATGGCCTTGCAATGGAATTGCAAAC
16153040 AA
378 AA
16153042 CTTCACCCTAATTTTTCAGTTTTCTTTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTTGT
1 CTTCACCCTAATTTTTCAGTTTTCTTTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTTGT
*
16153107 ACTCGGGTTGGGTATTCAGGTTTTTTAATGCCGCCTATCAACAAGGCTGAACCATTAATTTTTTT
66 ACTCGGGTTGGGTATTCGGGTTTTTTAATGCCGCCTATCAACAAGGCTGAACCATTAATTTTTTT
* *
16153172 TAACTAAATCCGACGAGTGTGAGAAAATAGGGGTGGCAGCACCCTCCACCACCCTTGGTATACCA
131 TAACTAAATCCGACGGGTGTGAGAAAATAGGGGTGGCACCACCCTCCACCACCCTTGGTATACCA
* * *
16153237 TTTTCTTAAATAATTTAGCTCGTTTATTATTTTAGATATTTTTAAA-TTTTTATATTATATATGT
196 TTTTCGTAAATAATTCAGCTCGTATATTATTTTAGATATTTTTAAATTTTTTATATTATATATGT
*
16153301 AAAAAAGCCAATAACTTACAAGTTGCTCAAAATACTAGTAAGACATTTCACCAAAAAAAATAAAT
261 AAAAAAGCCACTAACTTACAAGTTGCTCAAAATACTAGTAAGACATTTCACC--AAAAAATAAAT
*
16153366 ACTAATAAGACAAAAATTATAGAATAAATATGGCCTTGCAATGGAATTGCAAACAA
324 ACTAATAAGACAAAAATCATAGAATAAATATGGCCTTGCAATGGAATTGCAAACAA
* *
16153422 CTTCACCCTAATTTTTCAGTTTTCCTTTTTTTTATTTTTCATTTTGTATTTTGTTTTGTATTTGT
1 CTTCACCCTAATTTTTCAGTTTTCTTTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTTGT
** * * *
16153487 ACTTAGGTTGGGTATTCGGGTTTTTTAATGCCGCCTATGAACAAGGTTGCACCATTAAATTTTTT
66 ACTCGGGTTGGGTATTCGGGTTTTTTAATGCCGCCTATCAACAAGGCTGAACCATT-AATTTTTT
**
16153552 TTAACTAAATCCGACGGGTGTGAGAAAATA--GGCAGCACCACCCTCCACCACCCTTGGTATACC
130 TTAACTAAATCCGACGGGTGTGAGAAAATAGGGGTGGCACCACCCTCCACCACCCTTGGTATACC
* * *
16153615 ATTTTCGTAAATAATTCAACTAGTATATTTTTTTAGATATTTTTAAATTTTTTATATTATATATG
195 ATTTTCGTAAATAATTCAGCTCGTATATTATTTTAGATATTTTTAAATTTTTTATATTATATATG
* *
16153680 TAAAAAAGTCACTAACTTACAAGTTGCTCAAAATACTAGTAAGATATTTCACCAAAAAA-AAATA
260 TAAAAAAGCCACTAACTTACAAGTTGCTCAAAATACTAGTAAGACATTTCACCAAAAAATAAATA
*
16153744 CTAATAAGACAAAAATCATAGAATAAATATGGCCTTGCAATGAAATTGCAAACAA
325 CTAATAAGACAAAAATCATAGAATAAATATGGCCTTGCAATGGAATTGCAAACAA
16153799 TTTGCAATTA
Statistics
Matches: 713, Mismatches: 37, Indels: 26
0.92 0.05 0.03
Matches are distributed among these distances:
377 58 0.08
378 74 0.10
379 141 0.20
380 245 0.34
381 37 0.05
384 2 0.00
385 1 0.00
386 2 0.00
387 1 0.00
388 77 0.11
389 41 0.06
390 34 0.05
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.38
Consensus pattern (379 bp):
CTTCACCCTAATTTTTCAGTTTTCTTTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTTGT
ACTCGGGTTGGGTATTCGGGTTTTTTAATGCCGCCTATCAACAAGGCTGAACCATTAATTTTTTT
TAACTAAATCCGACGGGTGTGAGAAAATAGGGGTGGCACCACCCTCCACCACCCTTGGTATACCA
TTTTCGTAAATAATTCAGCTCGTATATTATTTTAGATATTTTTAAATTTTTTATATTATATATGT
AAAAAAGCCACTAACTTACAAGTTGCTCAAAATACTAGTAAGACATTTCACCAAAAAATAAATAC
TAATAAGACAAAAATCATAGAATAAATATGGCCTTGCAATGGAATTGCAAACAA
Found at i:16161198 original size:2 final size:2
Alignment explanation
Indices: 16161191--16161223 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
16161181 TATCAAATTA
16161191 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16161224 ATTTGGAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16162229 original size:4 final size:4
Alignment explanation
Indices: 16162220--16162259 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
16162210 CTACAAATAT
* * *
16162220 ATAC ATAC ATAC GTAC ATAC ATAC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
16162260 CCTTCGTATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:16166890 original size:21 final size:21
Alignment explanation
Indices: 16166864--16166905 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
16166854 AGAACATGGT
*
16166864 CGTGTGGGTATTCCACACGCC
1 CGTGTGGCTATTCCACACGCC
*
16166885 CGTGTGGCTATTTCACACGCC
1 CGTGTGGCTATTCCACACGCC
16166906 TTGTAACACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.33, G:0.26, T:0.26
Consensus pattern (21 bp):
CGTGTGGCTATTCCACACGCC
Found at i:16167398 original size:15 final size:15
Alignment explanation
Indices: 16167378--16167411 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
16167368 GAGGTAGTAC
16167378 AACAGAACAAAGCAA
1 AACAGAACAAAGCAA
* *
16167393 AACAGAACAGAGCAG
1 AACAGAACAAAGCAA
16167408 AACA
1 AACA
16167412 ACGCAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.21, G:0.18, T:0.00
Consensus pattern (15 bp):
AACAGAACAAAGCAA
Found at i:16168914 original size:37 final size:37
Alignment explanation
Indices: 16168849--16168958 Score: 161
Period size: 37 Copynumber: 3.0 Consensus size: 37
16168839 TACGTATGAT
* *
16168849 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTACTTGATCAGATAAGTGTAGC
*
16168884 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTACTTGATCAGATAAGTGTAGC
* *
16168921 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGC
1 CACTTATCACTTTGTTACTTGATCAGATAAGTGTAGC
16168958 C
1 C
16168959 GAAGCTATTA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 10 0.15
36 3 0.04
37 55 0.81
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.35
Consensus pattern (37 bp):
CACTTATCACTTTGTTACTTGATCAGATAAGTGTAGC
Found at i:16168973 original size:46 final size:46
Alignment explanation
Indices: 16168920--16169045 Score: 153
Period size: 52 Copynumber: 2.6 Consensus size: 46
16168910 ATAAGTGTAG
*
16168920 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTA
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTA
** * *
16168966 TTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
1 CCACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCAAAGCTA
16169018 CCACTTATCACTTTGTCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
16169046 AGTACTCAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
46 25 0.37
48 1 0.01
50 1 0.01
52 40 0.60
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (46 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTA
Found at i:16168988 original size:52 final size:52
Alignment explanation
Indices: 16168932--16169031 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
16168922 ACTTATCACT
* **
16168932 TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCAC
1 TTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACTTATCACTTTCCAC
* *
16168984 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTT
1 TTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACTTATCACTTT
16169032 GTCACTTGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (52 bp):
TTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACTTATCACTTTCCAC
Found at i:16179037 original size:29 final size:30
Alignment explanation
Indices: 16178983--16179069 Score: 81
Period size: 31 Copynumber: 2.9 Consensus size: 30
16178973 TTAAATGCTC
*
16178983 AAATCTTTATACAAGTACTCAAATAAAGGTT
1 AAATCTTTATAAAAGTACTCAAAT-AAGGTT
*
16179014 AAATCTTT-TAAAATTA-TCAAATAAGGTTT
1 AAATCTTTATAAAAGTACTCAAATAAGG-TT
* * *
16179043 TAA-CTTTTTGAAAAGTGCTCAAATAAG
1 AAATCTTTAT-AAAAGTACTCAAATAAG
16179070 AATTAAACTT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
28 8 0.17
29 11 0.23
30 11 0.23
31 17 0.36
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (30 bp):
AAATCTTTATAAAAGTACTCAAATAAGGTT
Found at i:16180181 original size:37 final size:37
Alignment explanation
Indices: 16180131--16180206 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
16180121 ATCACCTTTT
16180131 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
1 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
16180168 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
1 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
16180205 TC
1 TC
16180207 AAGAATCATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.43
Consensus pattern (37 bp):
TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
Found at i:16183666 original size:131 final size:131
Alignment explanation
Indices: 16183432--16183693 Score: 524
Period size: 131 Copynumber: 2.0 Consensus size: 131
16183422 TTTAAATACA
16183432 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
1 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
16183497 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
66 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
16183562 C
131 C
16183563 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
1 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
16183628 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
66 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
16183693 C
131 C
16183694 TTGACCATTT
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 131 1.00
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (131 bp):
AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
C
Done.