Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 86 of 208
Found at i:25278851 original size:6 final size:6
Alignment explanation
Indices: 25278832--25278880 Score: 62
Period size: 6 Copynumber: 8.2 Consensus size: 6
25278822 TAGGTTTCCA
* * * *
25278832 AAAATG GAAATG AAATTG AAAATG AAAATG AAAACG AAAATG GAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
25278880 A
1 A
25278881 TCCATTTATA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.61, C:0.02, G:0.20, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:25278855 original size:18 final size:18
Alignment explanation
Indices: 25278832--25278880 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
25278822 TAGGTTTCCA
**
25278832 AAAATGGAAATGAAATTG
1 AAAATGGAAATGAAAACG
*
25278850 AAAATGAAAATGAAAACG
1 AAAATGGAAATGAAAACG
25278868 AAAATGGAAATGA
1 AAAATGGAAATGA
25278881 TCCATTTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.61, C:0.02, G:0.20, T:0.16
Consensus pattern (18 bp):
AAAATGGAAATGAAAACG
Found at i:25287234 original size:12 final size:12
Alignment explanation
Indices: 25287181--25287226 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
25287171 TGTTCCAAAA
*
25287181 TTAATA-TTATT
1 TTAATATTTAAT
25287192 TTAATAGTTTAAT
1 TTAATA-TTTAAT
25287205 ATTAA-ATTTAAT
1 -TTAATATTTAAT
25287217 TTAATATTTA
1 TTAATATTTA
25287227 TCTTAATAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
11 10 0.33
12 11 0.37
13 5 0.17
14 4 0.13
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (12 bp):
TTAATATTTAAT
Found at i:25287236 original size:37 final size:38
Alignment explanation
Indices: 25287180--25287289 Score: 101
Period size: 37 Copynumber: 3.0 Consensus size: 38
25287170 TTGTTCCAAA
*
25287180 ATTAATA-TTATTTTAATAGTTTAATATTAAATTTAAT
1 ATTAATATTTATCTTAATAGTTTAATATTAAATTTAAT
*
25287217 -TTAATATTTATCTTAATAGTATT-TTATT-AATTTAAT
1 ATTAATATTTATCTTAATAGT-TTAATATTAAATTTAAT
*
25287253 ATTAA-AGTGATTATCTTTATA--TTAA-ATTAAATTTAAT
1 ATTAATA-T--TTATCTTAATAGTTTAATATTAAATTTAAT
25287290 GTTTGTCCTA
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
36 20 0.33
37 29 0.48
38 2 0.03
39 10 0.16
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (38 bp):
ATTAATATTTATCTTAATAGTTTAATATTAAATTTAAT
Found at i:25287257 original size:11 final size:11
Alignment explanation
Indices: 25287181--25287257 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
25287171 TGTTCCAAAA
*
25287181 TTAATATTATT
1 TTAATATTAAT
25287192 TTAATAGTTTAAT
1 TTAATA--TTAAT
25287205 ATTAA-ATTTAAT
1 -TTAATA-TTAAT
*
25287217 TTAATATTTAT
1 TTAATATTAAT
*
25287228 CTTAATAGT-AT
1 -TTAATATTAAT
25287239 TT--TATTAAT
1 TTAATATTAAT
25287248 TTAATATTAA
1 TTAATATTAA
25287258 AGTGATTATC
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
8 3 0.06
9 4 0.07
10 2 0.04
11 22 0.41
12 14 0.26
13 5 0.09
14 4 0.07
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (11 bp):
TTAATATTAAT
Found at i:25288327 original size:22 final size:22
Alignment explanation
Indices: 25288296--25288340 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
25288286 ATTACTTATC
*
25288296 TTATTATATATCTATTT-TATTA
1 TTATTATATA-ATATTTATATTA
*
25288318 TTATTTTATAATATTTATATTA
1 TTATTATATAATATTTATATTA
25288340 T
1 T
25288341 GTAATGCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
TTATTATATAATATTTATATTA
Found at i:25288691 original size:14 final size:14
Alignment explanation
Indices: 25288672--25288699 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25288662 TCTTGCGAAT
25288672 GAATGTGAATATTA
1 GAATGTGAATATTA
25288686 GAATGTGAATATTA
1 GAATGTGAATATTA
25288700 TAAAATTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (14 bp):
GAATGTGAATATTA
Found at i:25290845 original size:16 final size:16
Alignment explanation
Indices: 25290826--25290860 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
25290816 TAGTAATTTT
25290826 AATGTTAAAG-GACTAA
1 AATGTTAAAGTGA-TAA
25290842 AATGTTAAAGTGATAA
1 AATGTTAAAGTGATAA
25290858 AAT
1 AAT
25290861 TATGAGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.51, C:0.03, G:0.17, T:0.29
Consensus pattern (16 bp):
AATGTTAAAGTGATAA
Found at i:25301422 original size:49 final size:46
Alignment explanation
Indices: 25301318--25301438 Score: 134
Period size: 49 Copynumber: 2.6 Consensus size: 46
25301308 ATTTCCATAC
* * * * *
25301318 AAGACCATATCTGGGATATGGCATCAGTCTGATATGCGATCCGTGT
1 AAGACCATAGCTGGGCTATGGCATCGGTATGATATGCGATACGTGT
* *
25301364 AAGACCATAGCTGGGCTATGGCATCGGTATGTATTATGTGATTATGTGT
1 AAGACCATAGCTGGGCTATGGCATCGGTATG-A-TATGCGA-TACGTGT
* *
25301413 AAGACCATAGTTGGACTATGGCATCG
1 AAGACCATAGCTGGGCTATGGCATCG
25301439 AGAAAACGAA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 27 0.43
47 1 0.02
48 6 0.10
49 29 0.46
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (46 bp):
AAGACCATAGCTGGGCTATGGCATCGGTATGATATGCGATACGTGT
Found at i:25301679 original size:2 final size:2
Alignment explanation
Indices: 25301672--25301697 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25301662 ATGTTAATTC
25301672 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25301698 GTATTTATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25309110 original size:11 final size:11
Alignment explanation
Indices: 25309078--25309111 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
25309068 GTCGTAAAAT
*
25309078 TTATTTTAATT
1 TTATTTTAATA
25309089 TTATTTTAATA
1 TTATTTTAATA
25309100 TTATTTTAATA
1 TTATTTTAATA
25309111 T
1 T
25309112 CTACAGCATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTATTTTAATA
Found at i:25313582 original size:22 final size:22
Alignment explanation
Indices: 25313548--25313597 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
25313538 TCTTTTAACA
* *
25313548 CATAAACATTCAATTATATTAG
1 CATAATCAATCAATTATATTAG
*
25313570 CATAATCAATCAATTATATTGG
1 CATAATCAATCAATTATATTAG
25313592 CATAAT
1 CATAAT
25313598 ACATCCATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (22 bp):
CATAATCAATCAATTATATTAG
Found at i:25314231 original size:21 final size:21
Alignment explanation
Indices: 25314207--25314248 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
25314197 ATCCAATATG
**
25314207 CAATTAAGTCATTAATAACAC
1 CAATTAAACCATTAATAACAC
*
25314228 CAATTAAACCTTTAATAACAC
1 CAATTAAACCATTAATAACAC
25314249 ATAATCATGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.21, G:0.02, T:0.29
Consensus pattern (21 bp):
CAATTAAACCATTAATAACAC
Found at i:25318114 original size:16 final size:18
Alignment explanation
Indices: 25318095--25318127 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25318085 TTAGAATTTG
25318095 TACTTA-TT-ATTTTTAT
1 TACTTAGTTAATTTTTAT
25318111 TACTTAGTTAATTTTTA
1 TACTTAGTTAATTTTTA
25318128 GTTTTCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (18 bp):
TACTTAGTTAATTTTTAT
Found at i:25319042 original size:18 final size:18
Alignment explanation
Indices: 25319021--25319057 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
25319011 GTAGGTTTCC
* *
25319021 AAAAATGGAAATGGAAAT
1 AAAAATGAAAATGAAAAT
25319039 AAAAATGAAAATGAAAAT
1 AAAAATGAAAATGAAAAT
25319057 A
1 A
25319058 GGGATGATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (18 bp):
AAAAATGAAAATGAAAAT
Found at i:25321795 original size:16 final size:15
Alignment explanation
Indices: 25321767--25321817 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
25321757 TGATTGTTAA
*
25321767 AAAAATTTTAATATT
1 AAAAATTCTAATATT
*
25321782 AAAAA-TCTAAAATAT
1 AAAAATTCTAATAT-T
25321797 AAATAATTCTAATATT
1 AAA-AATTCTAATATT
25321813 AAAAA
1 AAAAA
25321818 ATTTTAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 6 0.20
15 11 0.37
16 6 0.20
17 7 0.23
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (15 bp):
AAAAATTCTAATATT
Found at i:25321820 original size:16 final size:16
Alignment explanation
Indices: 25321766--25321820 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
25321756 ATGATTGTTA
*
25321766 AAAAAATTTTAATATT
1 AAAAAATTCTAATATT
*
25321782 -AAAAA-TCTAAAATAT
1 AAAAAATTCTAATAT-T
*
25321797 AAATAATTCTAATATT
1 AAAAAATTCTAATATT
25321813 AAAAAATT
1 AAAAAATT
25321821 TTAAAATACC
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
14 6 0.19
15 6 0.19
16 12 0.39
17 7 0.23
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAAAATTCTAATATT
Found at i:25324447 original size:51 final size:51
Alignment explanation
Indices: 25324350--25324467 Score: 123
Period size: 51 Copynumber: 2.3 Consensus size: 51
25324340 CCATTAAATT
* * *
25324350 TATTTAATTTAAATTTGAAAATTTTAATTTAAATAAGTGAAATTATATAAA
1 TATTTAATTTAAATTTGAAAATTTTAATATAAATAAATGAAATTATAAAAA
* * *
25324401 TATTTTATTTAATATTTGAAAATTTT-ATAATAAA-AAATTAACTTATAAAAA
1 TATTTAATTTAA-ATTTGAAAATTTTAAT-ATAAATAAATGAAATTATAAAAA
*
25324452 TTCACTTAATTTAAAT
1 -T-ATTTAATTTAAAT
25324468 AAATCAATTT
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
51 26 0.47
52 20 0.36
53 9 0.16
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (51 bp):
TATTTAATTTAAATTTGAAAATTTTAATATAAATAAATGAAATTATAAAAA
Found at i:25324756 original size:27 final size:28
Alignment explanation
Indices: 25324709--25324763 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
25324699 TTAAAAAGTA
*
25324709 AATTTAAATTTGAAATAAAAATTTATTT
1 AATTTAAATTTGAAATAAAAAATTATTT
*
25324737 AATTTAAA-TTG-AATGGAAAAATTATTT
1 AATTTAAATTTGAAAT-AAAAAATTATTT
25324764 TTTTTCAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 3 0.12
27 13 0.54
28 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (28 bp):
AATTTAAATTTGAAATAAAAAATTATTT
Found at i:25324756 original size:28 final size:27
Alignment explanation
Indices: 25324709--25324763 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
25324699 TTAAAAAGTA
25324709 AATTTAAATTTGAAATAAAAATTTATTT
1 AATTTAAATTTGAAATAAAAA-TTATTT
25324737 AATTTAAA-TTG-AATGGAAAAATTATTT
1 AATTTAAATTTGAAAT--AAAAATTATTT
25324764 TTTTTCAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 3 0.12
27 9 0.36
28 13 0.52
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (27 bp):
AATTTAAATTTGAAATAAAAATTATTT
Found at i:25325967 original size:22 final size:22
Alignment explanation
Indices: 25325942--25325984 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
25325932 TAAGTTGTTA
25325942 ACGTACTAAGCTCTCATGTTTC
1 ACGTACTAAGCTCTCATGTTTC
25325964 ACGTACTAAGCTCTCATGTTT
1 ACGTACTAAGCTCTCATGTTT
25325985 GAACAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (22 bp):
ACGTACTAAGCTCTCATGTTTC
Found at i:25332795 original size:23 final size:23
Alignment explanation
Indices: 25332752--25332795 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
25332742 TTTATAGTGA
* *
25332752 TATTATATTAGATGATGAATTCT
1 TATTATAGTAGATGATAAATTCT
25332775 TATTATAGTA-ATGATTAAATT
1 TATTATAGTAGATGA-TAAATT
25332796 GTAAAAGTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (23 bp):
TATTATAGTAGATGATAAATTCT
Found at i:25342841 original size:25 final size:25
Alignment explanation
Indices: 25342807--25342879 Score: 94
Period size: 25 Copynumber: 3.0 Consensus size: 25
25342797 TAGGGTTGTC
*
25342807 GATTTATAGCTCGTGAGAGTATACT
1 GATTTATAGCTCGTGAGAGCATACT
*
25342832 GATTTATAGCTCGTAAGAGCATA-T
1 GATTTATAGCTCGTGAGAGCATACT
* * *
25342856 CATTCATAGCTCATGAGAGCATAC
1 GATTTATAGCTCGTGAGAGCATAC
25342880 CGATCTTCAG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 20 0.49
25 21 0.51
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (25 bp):
GATTTATAGCTCGTGAGAGCATACT
Found at i:25342874 original size:24 final size:25
Alignment explanation
Indices: 25342812--25342879 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 25
25342802 TTGTCGATTT
* * *
25342812 ATAGCTCGTGAGAGTATACTGATTT
1 ATAGCTCGTGAGAGCATACTCATTC
*
25342837 ATAGCTCGTAAGAGCATA-TCATTC
1 ATAGCTCGTGAGAGCATACTCATTC
*
25342861 ATAGCTCATGAGAGCATAC
1 ATAGCTCGTGAGAGCATAC
25342880 CGATCTTCAG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
24 20 0.56
25 16 0.44
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (25 bp):
ATAGCTCGTGAGAGCATACTCATTC
Found at i:25342923 original size:25 final size:25
Alignment explanation
Indices: 25342839--25342929 Score: 71
Period size: 25 Copynumber: 3.7 Consensus size: 25
25342829 ACTGATTTAT
* * * *
25342839 AGCTCGTAAGAGCATATC-ATTCAT
1 AGCTCATATGAGCATACCGATTCAC
*
25342863 AGCTCATGA-GAGCATACCGA-TCTTC
1 AGCTCAT-ATGAGCATACCGATTC-AC
* *
25342888 AGCACAAATGAGCATACCGATTCAC
1 AGCTCATATGAGCATACCGATTCAC
*
25342913 AGCTCGTATGAGCATAC
1 AGCTCATATGAGCATAC
25342930 ATGTAGATAA
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
24 17 0.33
25 33 0.63
26 2 0.04
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (25 bp):
AGCTCATATGAGCATACCGATTCAC
Found at i:25352474 original size:45 final size:44
Alignment explanation
Indices: 25352384--25352476 Score: 134
Period size: 45 Copynumber: 2.1 Consensus size: 44
25352374 ATTACAACAT
25352384 CATTCCATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
* * *
25352428 CATTCTATTCAACCAAACA-ATTGAATTAGTATTACGCCTCTATTC
1 CATTCCATTCAACCAAACACA-AGAA-TACTATTACGCCTCTATTC
25352473 CATT
1 CATT
25352477 ACAGCGAACC
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.48
45 22 0.50
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
Found at i:25358919 original size:24 final size:25
Alignment explanation
Indices: 25358875--25358926 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
25358865 TTATTTGTAC
* *
25358875 TAATTATATACATTATCTATATATA
1 TAATTATATACATTATATATATACA
25358900 TAATT-TATA-ATATATATATATACA
1 TAATTATATACAT-TATATATATACA
25358924 TAA
1 TAA
25358927 AAGCAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 2 0.08
24 17 0.71
25 5 0.21
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (25 bp):
TAATTATATACATTATATATATACA
Found at i:25363203 original size:49 final size:49
Alignment explanation
Indices: 25363147--25363275 Score: 231
Period size: 49 Copynumber: 2.6 Consensus size: 49
25363137 TTTATTTTCT
*
25363147 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCTCATAACATATAC
1 CGATGCCATAGTCCAGCTATGGTCTTACACGTAATCTCATAACATATAC
*
25363196 CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCTCATAACATATAC
1 CGATGCCATAGTCCAGCTATGGTCTTACACGTAATCTCATAACATATAC
*
25363245 CGATGCCATATTCCAGCTATGGTCTTACACG
1 CGATGCCATAGTCCAGCTATGGTCTTACACG
25363276 GAATTACATA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 76 1.00
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (49 bp):
CGATGCCATAGTCCAGCTATGGTCTTACACGTAATCTCATAACATATAC
Found at i:25364493 original size:23 final size:23
Alignment explanation
Indices: 25364467--25364588 Score: 154
Period size: 23 Copynumber: 5.3 Consensus size: 23
25364457 ATAAGTGCCA
*
25364467 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCTGAAGCTAC
* *
25364490 CACTGATACGTAGCTGTAGCTAC
1 CACTGATATGTAGCTGAAGCTAC
* * * *
25364513 CACTAAAATGTAGCCGAAACTAC
1 CACTGATATGTAGCTGAAGCTAC
*
25364536 CACTGATATGTAGCTGTAGCTAC
1 CACTGATATGTAGCTGAAGCTAC
* *
25364559 CATTGAAATGTAGCTGAAGCTAC
1 CACTGATATGTAGCTGAAGCTAC
25364582 CACTGAT
1 CACTGAT
25364589 CAATAACACT
Statistics
Matches: 80, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 80 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCTGAAGCTAC
Found at i:25364541 original size:46 final size:46
Alignment explanation
Indices: 25364474--25364588 Score: 185
Period size: 46 Copynumber: 2.5 Consensus size: 46
25364464 CCACACTGAT
25364474 ATGTAGCCGAAGCTACCACTGATACGTAGCTGTAGCTACCACTAAA
1 ATGTAGCCGAAGCTACCACTGATACGTAGCTGTAGCTACCACTAAA
* * * *
25364520 ATGTAGCCGAAACTACCACTGATATGTAGCTGTAGCTACCATTGAA
1 ATGTAGCCGAAGCTACCACTGATACGTAGCTGTAGCTACCACTAAA
*
25364566 ATGTAGCTGAAGCTACCACTGAT
1 ATGTAGCCGAAGCTACCACTGAT
25364589 CAATAACACT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 63 1.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24
Consensus pattern (46 bp):
ATGTAGCCGAAGCTACCACTGATACGTAGCTGTAGCTACCACTAAA
Found at i:25371582 original size:13 final size:13
Alignment explanation
Indices: 25371564--25371593 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
25371554 GTTTGAAATA
25371564 ATTATGGTATTTG
1 ATTATGGTATTTG
25371577 ATTATGGTATTTG
1 ATTATGGTATTTG
25371590 ATTA
1 ATTA
25371594 GAAATTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (13 bp):
ATTATGGTATTTG
Found at i:25388652 original size:21 final size:22
Alignment explanation
Indices: 25388626--25388681 Score: 78
Period size: 21 Copynumber: 2.6 Consensus size: 22
25388616 AGTTTCCCCC
25388626 GTTTGCAGTGGCTATACAATT-
1 GTTTGCAGTGGCTATACAATTA
*
25388647 GTTTGCAGTGGCTATATAATTA
1 GTTTGCAGTGGCTATACAATTA
* *
25388669 ATTTGCAGCGGCT
1 GTTTGCAGTGGCT
25388682 CCATCTGCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.38
Consensus pattern (22 bp):
GTTTGCAGTGGCTATACAATTA
Found at i:25389725 original size:43 final size:43
Alignment explanation
Indices: 25389678--25389795 Score: 236
Period size: 43 Copynumber: 2.7 Consensus size: 43
25389668 AGGTATATTA
25389678 AAATATAATTAAAATCATTTTGATTATATAATATTTTTAATTG
1 AAATATAATTAAAATCATTTTGATTATATAATATTTTTAATTG
25389721 AAATATAATTAAAATCATTTTGATTATATAATATTTTTAATTG
1 AAATATAATTAAAATCATTTTGATTATATAATATTTTTAATTG
25389764 AAATATAATTAAAATCATTTTGATTATATAAT
1 AAATATAATTAAAATCATTTTGATTATATAAT
25389796 CTTTAATATA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (43 bp):
AAATATAATTAAAATCATTTTGATTATATAATATTTTTAATTG
Found at i:25389728 original size:20 final size:20
Alignment explanation
Indices: 25389703--25389772 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
25389693 CATTTTGATT
25389703 ATATAATATTTTTAATTGAA
1 ATATAATATTTTTAATTGAA
*** * * *
25389723 ATATAATTAAAATCATTTTGATT
1 ATATAA-TATTTTTA-ATTGA-A
25389746 ATATAATATTTTTAATTGAA
1 ATATAATATTTTTAATTGAA
25389766 ATATAAT
1 ATATAAT
25389773 TAAAATCATT
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
20 13 0.37
21 8 0.23
22 8 0.23
23 6 0.17
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (20 bp):
ATATAATATTTTTAATTGAA
Found at i:25393622 original size:121 final size:121
Alignment explanation
Indices: 25393407--25393800 Score: 725
Period size: 121 Copynumber: 3.2 Consensus size: 121
25393397 NNTATTGTTC
*
25393407 AATTAAAATATATTTAATCATATATTATGTTAATTTATATTTTACAGTATCATATATTATGATTT
1 AATTAAAATATATTTAATAATA-ATTATGTTAATTTATATTTTACAGTATCATATATTATGATTT
25393472 GAGTAAATTAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTT
65 GAGTAAATTAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTT
*
25393529 AATTAAAATTTATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTG
1 AATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTG
25393594 AGTAAATTAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTT
66 AGTAAATTAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTT
* *
25393650 AATTAAAATTTATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTC
1 AATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTG
* *
25393715 AGTAAATTAATATAAAGAATATTAATTATTAAGAATTTTTTTAAATTATATATTTT
66 AGTAAATTAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTT
25393771 AATTAAAATATATTTAATAATAATTATGTT
1 AATTAAAATATATTTAATAATAATTATGTT
25393801 TAAATATGAT
Statistics
Matches: 266, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
121 246 0.92
122 20 0.08
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (121 bp):
AATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTG
AGTAAATTAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTT
Found at i:25394012 original size:43 final size:45
Alignment explanation
Indices: 25393948--25394037 Score: 112
Period size: 43 Copynumber: 2.0 Consensus size: 45
25393938 ACCTCTATTC
* * *
25393948 CATTCAACCAAACACAAGATTA-C-ATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
25393991 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
25394036 CA
1 CA
25394038 CCTCTAATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 19 0.49
44 1 0.03
45 19 0.49
ACGTcount: A:0.38, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:25394039 original size:16 final size:16
Alignment explanation
Indices: 25394018--25394086 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
25394008 GATTAGCTAT
25394018 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
25394034 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
25394051 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
25394067 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
25394083 TACA
1 TACA
25394087 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:25394060 original size:33 final size:32
Alignment explanation
Indices: 25394018--25394086 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
25394008 GATTAGCTAT
25394018 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
25394051 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
25394083 TACA
1 TACA
25394087 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:25403394 original size:12 final size:12
Alignment explanation
Indices: 25403379--25403409 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
25403369 TACACGGGTG
25403379 AGGACACAGCCT
1 AGGACACAGCCT
25403391 AGGACACAGCCT
1 AGGACACAGCCT
25403403 AGGACAC
1 AGGACAC
25403410 GACCGTGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.32, G:0.26, T:0.06
Consensus pattern (12 bp):
AGGACACAGCCT
Found at i:25408670 original size:11 final size:10
Alignment explanation
Indices: 25408629--25408667 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
25408619 TTTGTGTTCT
25408629 AAAAAAATATG
1 AAAAAAA-ATG
**
25408640 AAATGAAATG
1 AAAAAAAATG
25408650 AAAAAAAATG
1 AAAAAAAATG
25408660 AAAAAAAA
1 AAAAAAAA
25408668 ATGTGATTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
10 19 0.79
11 5 0.21
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (10 bp):
AAAAAAAATG
Found at i:25411754 original size:56 final size:52
Alignment explanation
Indices: 25411681--25411880 Score: 178
Period size: 50 Copynumber: 3.9 Consensus size: 52
25411671 ACATTAGGGG
* * **
25411681 GATGAGA--TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA-CACCGA
* *
25411732 GATTATGAGAGGTCCCACGTAAGATCATGTCTGGGACATGGCGTT-G-ACACCGA
1 G---ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACACCGA
* *
25411785 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCA-TGG-GCACCGA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACACCGA
* ** ** * * *
25411835 TATGAGAACTCCCATATAAGACCATATCTGGGATATGACATTGGCA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
25411881 GTAGAGGAAA
Statistics
Matches: 121, Mismatches: 20, Indels: 15
0.78 0.13 0.10
Matches are distributed among these distances:
49 1 0.01
50 74 0.61
51 4 0.03
53 4 0.03
54 7 0.06
55 1 0.01
56 30 0.25
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (52 bp):
GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACACCGA
Found at i:25411928 original size:49 final size:49
Alignment explanation
Indices: 25411735--25411929 Score: 153
Period size: 50 Copynumber: 3.9 Consensus size: 49
25411725 TTATTGAGAT
** * * * * *
25411735 TATGAGAGGTCCCACGTAAGATCATGTCTGGGACATGGCGTTGACACCGA
1 TATGAGAACTCCCATGTAAGACCATGTCTGGGAAATGGCATTGGCA-CGA
* ** ** * *
25411785 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 TATGAGAACTCCCATGTAAGACCATGTCTGGGAAATGGCATTGGCA-CGA
* * * *
25411835 TATGAGAACTCCCATATAAGACCATATCTGGGATATGACATTGGCA-G-
1 TATGAGAACTCCCATGTAAGACCATGTCTGGGAAATGGCATTGGCACGA
*
25411882 TA-GAGGAAACATCCCATGTAAGACCATGTCTGGGAAATGGCTTTGGCA
1 TATGA-G-AAC-TCCCATGTAAGACCATGTCTGGGAAATGGCATTGGCA
25411930 TGTTATTATC
Statistics
Matches: 121, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
46 2 0.02
47 3 0.02
48 4 0.03
49 32 0.26
50 80 0.66
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (49 bp):
TATGAGAACTCCCATGTAAGACCATGTCTGGGAAATGGCATTGGCACGA
Found at i:25412155 original size:20 final size:20
Alignment explanation
Indices: 25412130--25412168 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
25412120 TGAGTTATTT
25412130 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
25412150 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
25412169 GATGAAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:25413549 original size:31 final size:31
Alignment explanation
Indices: 25413501--25413559 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
25413491 TTGCAATGCG
* * *
25413501 TTGACTTGATTATGTTACTATAAGCATGCCA
1 TTGAATTGATTACGTTACCATAAGCATGCCA
25413532 TTGAATTGATTACGTTACCATAAGCATG
1 TTGAATTGATTACGTTACCATAAGCATG
25413560 TTGACCATGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (31 bp):
TTGAATTGATTACGTTACCATAAGCATGCCA
Found at i:25413580 original size:40 final size:40
Alignment explanation
Indices: 25413521--25413613 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
25413511 TATGTTACTA
*
25413521 TAAG-CATGCCATTGAATTGATTACGTTACCATAAGCATG
1 TAAGACATGCCATTAAATTGATTACGTTACCATAAGCATG
* * *
25413560 T-TGACCATGCCATTAAATTGATTATGTTTCCATAAGCATG
1 TAAGA-CATGCCATTAAATTGATTACGTTACCATAAGCATG
25413600 TAAGACATGCCATT
1 TAAGACATGCCATT
25413614 GTACTTAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
38 1 0.02
39 1 0.02
40 42 0.91
41 2 0.04
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (40 bp):
TAAGACATGCCATTAAATTGATTACGTTACCATAAGCATG
Found at i:25419911 original size:29 final size:30
Alignment explanation
Indices: 25419869--25419925 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
25419859 TACATGTATG
*
25419869 CTCATACGAGCTGTA-AATGGGAAGCTCCA
1 CTCATACGAGCTGTAGAACGGGAAGCTCCA
*
25419898 CTCATATGAGCTGTAGAACGGGAAGCTC
1 CTCATACGAGCTGTAGAACGGGAAGCTC
25419926 ATAAGAGCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (30 bp):
CTCATACGAGCTGTAGAACGGGAAGCTCCA
Found at i:25426224 original size:35 final size:35
Alignment explanation
Indices: 25426178--25426251 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
25426168 GTTAATATTA
25426178 TAAACTGAGAGAGACAAGGATTTCCAAACTGAGAC
1 TAAACTGAGAGAGACAAGGATTTCCAAACTGAGAC
25426213 TAAACTGAGAGAGACAAGGATTTCCAAACTGAGAC
1 TAAACTGAGAGAGACAAGGATTTCCAAACTGAGAC
25426248 TAAA
1 TAAA
25426252 TTCAAGTCTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.45, C:0.16, G:0.22, T:0.18
Consensus pattern (35 bp):
TAAACTGAGAGAGACAAGGATTTCCAAACTGAGAC
Found at i:25427041 original size:6 final size:6
Alignment explanation
Indices: 25427032--25427066 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
25427022 ACTGATACTA
25427032 CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAA
1 CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAA
25427067 CTTATTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.69, C:0.17, G:0.00, T:0.14
Consensus pattern (6 bp):
CAAAAT
Found at i:25435585 original size:9 final size:9
Alignment explanation
Indices: 25435571--25435604 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
25435561 CACATTGCCA
25435571 CCTCTTTCC
1 CCTCTTTCC
25435580 CCTCTTTCC
1 CCTCTTTCC
*
25435589 TCTCTTTCC
1 CCTCTTTCC
25435598 CCTCTTT
1 CCTCTTT
25435605 TTTCTCTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (9 bp):
CCTCTTTCC
Found at i:25436779 original size:38 final size:38
Alignment explanation
Indices: 25436736--25436825 Score: 144
Period size: 38 Copynumber: 2.4 Consensus size: 38
25436726 ATGTGATTTT
* * **
25436736 AAGTGAAAACTGATATAATGAGCATGTCTCACATGTTA
1 AAGTGAAAAGTGATATAATGAGCATGTCTCACAGGCCA
25436774 AAGTGAAAAGTGATATAATGAGCATGTCTCACAGGCCA
1 AAGTGAAAAGTGATATAATGAGCATGTCTCACAGGCCA
25436812 AAGTGAAAAGTGAT
1 AAGTGAAAAGTGAT
25436826 TTTTAAGTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.24
Consensus pattern (38 bp):
AAGTGAAAAGTGATATAATGAGCATGTCTCACAGGCCA
Found at i:25436835 original size:18 final size:19
Alignment explanation
Indices: 25436812--25436847 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
25436802 TCACAGGCCA
25436812 AAGTG-AAAAGTGATTTTT
1 AAGTGAAAAAGTGATTTTT
25436830 AAGTGAAAAAGTGATTTT
1 AAGTGAAAAAGTGATTTT
25436848 GTGGCCATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (19 bp):
AAGTGAAAAAGTGATTTTT
Found at i:25437045 original size:47 final size:47
Alignment explanation
Indices: 25436936--25437045 Score: 139
Period size: 47 Copynumber: 2.3 Consensus size: 47
25436926 TATCCACAAC
* * * *
25436936 ATGTGGCAGTTTATCTGCGAAAGTAGTGGCTTGTCCACAATTTTATT
1 ATGTGGCAGTTTATCTACAAAAGTAGTGACTTGTCCACAATTTGATT
* * * *
25436983 ATGTGGCAATATATCTACAAAAGTGGTGACTTGTCCATAATTTGATT
1 ATGTGGCAGTTTATCTACAAAAGTAGTGACTTGTCCACAATTTGATT
*
25437030 ATGTGGTAGTTTATCT
1 ATGTGGCAGTTTATCT
25437046 GCATTACCAT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (47 bp):
ATGTGGCAGTTTATCTACAAAAGTAGTGACTTGTCCACAATTTGATT
Found at i:25438417 original size:2 final size:2
Alignment explanation
Indices: 25438410--25438436 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
25438400 TGGCAATTGT
25438410 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
25438437 TTGGTATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25444123 original size:8 final size:8
Alignment explanation
Indices: 25444110--25444135 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
25444100 TTATGAGTGA
25444110 TGACATTT
1 TGACATTT
25444118 TGACATTT
1 TGACATTT
25444126 TGACATTT
1 TGACATTT
25444134 TG
1 TG
25444136 GTGCTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (8 bp):
TGACATTT
Found at i:25449580 original size:18 final size:18
Alignment explanation
Indices: 25449537--25449580 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
25449527 AATTTTTATG
*
25449537 ATTGGGTTAGGTTGGGTA
1 ATTGGGTTAGGTTGGATA
* *
25449555 ATTAGGTTGGGTTGGATA
1 ATTGGGTTAGGTTGGATA
*
25449573 CTTGGGTT
1 ATTGGGTT
25449581 CGGATTGGGT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.16, C:0.02, G:0.41, T:0.41
Consensus pattern (18 bp):
ATTGGGTTAGGTTGGATA
Found at i:25451036 original size:27 final size:27
Alignment explanation
Indices: 25451005--25451056 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
25450995 ATTGTAAACA
25451005 CATTAGGAAAGAAATGACTTCGTGGCG
1 CATTAGGAAAGAAATGACTTCGTGGCG
* * *
25451032 CATTATGAAAGAAATGCCTTTGTGG
1 CATTAGGAAAGAAATGACTTCGTGG
25451057 TGAAAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (27 bp):
CATTAGGAAAGAAATGACTTCGTGGCG
Found at i:25452770 original size:27 final size:28
Alignment explanation
Indices: 25452736--25452836 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 28
25452726 CTTGTTCTTA
*
25452736 GCCACAAAGACAATTCTTTCATAATGCT
1 GCCACAAAGACATTTCTTTCATAATGCT
* * ** *
25452764 -CCGCAAAGGCATTTCTTTTGTGATG-T
1 GCCACAAAGACATTTCTTTCATAATGCT
*
25452790 GCCACAAATACATTTCTTTCATAATGC-
1 GCCACAAAGACATTTCTTTCATAATGCT
* *
25452817 GCCAAAAAGGCATTTCTTTC
1 GCCACAAAGACATTTCTTTC
25452837 TTGACATGTT
Statistics
Matches: 56, Mismatches: 15, Indels: 5
0.74 0.20 0.07
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.33
Consensus pattern (28 bp):
GCCACAAAGACATTTCTTTCATAATGCT
Found at i:25457730 original size:85 final size:85
Alignment explanation
Indices: 25457631--25457810 Score: 297
Period size: 85 Copynumber: 2.1 Consensus size: 85
25457621 ATAGAAATGG
* *
25457631 AAATGAAAATTTGCAATCCTATATGGATTACTTAAAAACTGATCGGAAGAATAAGTTTATGTTTT
1 AAATGAAAATTTGCAATCCTATATAGATTACTTAAAAACTAATCGGAAGAATAAGTTTATGTTTT
* *
25457696 TGGACTATTTTGAAGCTTGA
66 TGGACTAATTTGAAGCCTGA
* *
25457716 AAATGAAAATTTGCAATCTTATATAGATTACTTAAAAACTAATTGGAAGAATAAGTTTATGTTTT
1 AAATGAAAATTTGCAATCCTATATAGATTACTTAAAAACTAATCGGAAGAATAAGTTTATGTTTT
*
25457781 TGGACTAATTTGAAGCCTGG
66 TGGACTAATTTGAAGCCTGA
25457801 AAATGAAAAT
1 AAATGAAAAT
25457811 AAACTATTCG
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 88 1.00
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (85 bp):
AAATGAAAATTTGCAATCCTATATAGATTACTTAAAAACTAATCGGAAGAATAAGTTTATGTTTT
TGGACTAATTTGAAGCCTGA
Found at i:25460313 original size:50 final size:50
Alignment explanation
Indices: 25460189--25460429 Score: 279
Period size: 50 Copynumber: 4.8 Consensus size: 50
25460179 GATAATAACA
* ** * * * **
25460189 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * ** * *
25460239 -GCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
25460288 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGG
* * *
25460338 TGGCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
25460388 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
25460430 TTACCCAAAT
Statistics
Matches: 164, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 40 0.24
50 123 0.75
51 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:25467031 original size:21 final size:22
Alignment explanation
Indices: 25467002--25467042 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
25466992 AATTTTGAAA
25467002 AAAGAAAAAAAGAAAAGAATTG
1 AAAGAAAAAAAGAAAAGAATTG
*
25467024 AAAG-AAAAAGGAAAAGAAT
1 AAAGAAAAAAAGAAAAGAAT
25467043 GAATAAGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (22 bp):
AAAGAAAAAAAGAAAAGAATTG
Found at i:25476159 original size:16 final size:16
Alignment explanation
Indices: 25476138--25476176 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
25476128 ATTTGGTTCA
*
25476138 TTGTAATGGAATAAAG
1 TTGTAATAGAATAAAG
*
25476154 TTGTAATAGAATAGAG
1 TTGTAATAGAATAAAG
25476170 TTGTAAT
1 TTGTAAT
25476177 CCGTAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.23, T:0.36
Consensus pattern (16 bp):
TTGTAATAGAATAAAG
Found at i:25476445 original size:13 final size:15
Alignment explanation
Indices: 25476429--25476469 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
25476419 ATATAATTTA
25476429 ATAATATTTTA-A-T
1 ATAATATTTTATATT
25476442 ATAATTATTTTATATT
1 ATAA-TATTTTATATT
*
25476458 AAAATATTTTAT
1 ATAATATTTTAT
25476470 TTTAAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 9 0.38
16 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATAATATTTTATATT
Found at i:25476533 original size:31 final size:31
Alignment explanation
Indices: 25476471--25476534 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
25476461 ATATTTTATT
* *
25476471 TTAAATTATATTTTAAAATTAAATAGTTTTA
1 TTAAATTATATTTAAAAATTAAATAGATTTA
25476502 TTAAATTATA-TTAAAAATTTCAAATA-ATTTA
1 TTAAATTATATTTAAAAA-TT-AAATAGATTTA
25476533 TT
1 TT
25476535 TTTATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 6 0.21
31 18 0.62
32 5 0.17
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (31 bp):
TTAAATTATATTTAAAAATTAAATAGATTTA
Found at i:25476886 original size:44 final size:44
Alignment explanation
Indices: 25476836--25476920 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
25476826 TAATTGTAAA
* *
25476836 TTAAATTATAGTTACTTTTAAATGTGTAATTATCACAACTTTTG
1 TTAAATTATAATTACTTTTAAATGTATAATTATCACAACTTTTG
* *
25476880 TTAAATTATAATTATTTTTAAATGTATAATTTTCACAACTT
1 TTAAATTATAATTACTTTTAAATGTATAATTATCACAACTT
25476921 ATATATATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.49
Consensus pattern (44 bp):
TTAAATTATAATTACTTTTAAATGTATAATTATCACAACTTTTG
Found at i:25485147 original size:14 final size:13
Alignment explanation
Indices: 25485132--25485184 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
25485122 TCTATCTTTC
25485132 TTTTCTTTAATTT
1 TTTTCTTTAATTT
*
25485145 CTTTACTTTAATTT
1 -TTTTCTTTAATTT
* *
25485159 TGTTCTTATTATTT
1 TTTTCTT-TAATTT
*
25485173 TTATCTTTAATT
1 TTTTCTTTAATT
25485185 ACTTAATGTT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
13 9 0.29
14 22 0.71
ACGTcount: A:0.19, C:0.09, G:0.02, T:0.70
Consensus pattern (13 bp):
TTTTCTTTAATTT
Found at i:25491795 original size:17 final size:15
Alignment explanation
Indices: 25491763--25491800 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
25491753 TGTTATTGGT
25491763 TGATTGTTGGTTGTG
1 TGATTGTTGGTTGTG
25491778 TGATTGTGTGGTT-TG
1 TGATTGT-TGGTTGTG
25491793 TG-TTGTTG
1 TGATTGTTG
25491801 AAGCGTCGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 2 0.09
14 4 0.18
15 11 0.50
16 5 0.23
ACGTcount: A:0.05, C:0.00, G:0.39, T:0.55
Consensus pattern (15 bp):
TGATTGTTGGTTGTG
Found at i:25497495 original size:19 final size:20
Alignment explanation
Indices: 25497439--25497495 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
25497429 ATTAAACTGC
*
25497439 ATTATTATT-GTATTATGGT
1 ATTATTATTAGTATTATGAT
*
25497458 ATTATCTATTATTTATTAT-AT
1 ATTAT-TATTA-GTATTATGAT
25497479 ATTATTATTAGTATTAT
1 ATTATTATTAGTATTAT
25497496 TACTTCCATA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
19 11 0.34
20 9 0.28
21 6 0.19
22 6 0.19
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.60
Consensus pattern (20 bp):
ATTATTATTAGTATTATGAT
Found at i:25497953 original size:13 final size:13
Alignment explanation
Indices: 25497935--25497960 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25497925 TGCTTGTAAA
25497935 TTTACTTGTATAT
1 TTTACTTGTATAT
25497948 TTTACTTGTATAT
1 TTTACTTGTATAT
25497961 ATATTTGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (13 bp):
TTTACTTGTATAT
Found at i:25502832 original size:71 final size:71
Alignment explanation
Indices: 25502743--25502880 Score: 231
Period size: 71 Copynumber: 1.9 Consensus size: 71
25502733 TCAAAGTGTT
* **
25502743 TTTCAACTTATTTTAACATGATTAGAAGGTTTCTAATGTTACATTGAATTTTTTGTTAAGAATTT
1 TTTCAACTTATTTTAACATGATTAGAAGGTTTCTAATGTTACATTGAATTGTTCATTAAGAATTT
25502808 TTTGAG
66 TTTGAG
* *
25502814 TTTCAACTTGTTTTAACATGATTAGAAGGTTTCTAATGTTACTTTGAATTGTTCATTAAGAATTT
1 TTTCAACTTATTTTAACATGATTAGAAGGTTTCTAATGTTACATTGAATTGTTCATTAAGAATTT
25502879 TT
66 TT
25502881 CAGTTTTAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.29, C:0.08, G:0.14, T:0.49
Consensus pattern (71 bp):
TTTCAACTTATTTTAACATGATTAGAAGGTTTCTAATGTTACATTGAATTGTTCATTAAGAATTT
TTTGAG
Found at i:25507449 original size:22 final size:21
Alignment explanation
Indices: 25507424--25507465 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
25507414 TTAAATAAAT
*
25507424 TTTAGTTAATTTAGTTTAAGTA
1 TTTAATTAATTTAG-TTAAGTA
25507446 TTTAATTAATTTAGTTAAGT
1 TTTAATTAATTTAGTTAAGT
25507466 GTTAAATGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (21 bp):
TTTAATTAATTTAGTTAAGTA
Found at i:25523911 original size:29 final size:29
Alignment explanation
Indices: 25523879--25523947 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 29
25523869 CATACACAGT
* *
25523879 CAGATTCAGATTCGGTCTTAAGTCCTTTA
1 CAGATTCAGATTCAGACTTAAGTCCTTTA
*
25523908 CAGATTCAGATTCAGACTTAAGTCTTTTA
1 CAGATTCAGATTCAGACTTAAGTCCTTTA
* *
25523937 CAAATTTAGAT
1 CAGATTCAGAT
25523948 AACAGAATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (29 bp):
CAGATTCAGATTCAGACTTAAGTCCTTTA
Found at i:25524463 original size:16 final size:18
Alignment explanation
Indices: 25524432--25524465 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
25524422 CCTTATGGCT
25524432 TGCCTGTGTGGGCCCACA
1 TGCCTGTGTGGGCCCACA
25524450 TGCC-GTGT-GGCCCACA
1 TGCCTGTGTGGGCCCACA
25524466 CAGCCTGACC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.12, C:0.35, G:0.32, T:0.21
Consensus pattern (18 bp):
TGCCTGTGTGGGCCCACA
Found at i:25524467 original size:18 final size:18
Alignment explanation
Indices: 25524432--25524472 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
25524422 CCTTATGGCT
*
25524432 TGCCTGTGTGGGCCCACA
1 TGCCTGTGTGGCCCCACA
25524450 TGCC-GTGTGGCCCACACA
1 TGCCTGTGTGGCCC-CACA
25524468 -GCCTG
1 TGCCTG
25524473 ACCCAAAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.12, C:0.37, G:0.32, T:0.20
Consensus pattern (18 bp):
TGCCTGTGTGGCCCCACA
Found at i:25531921 original size:43 final size:43
Alignment explanation
Indices: 25531860--25531945 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
25531850 ATGCACAAAG
25531860 TAAGCTTTGGAAGCTTAGTAAGCCATAAGAAAATAAATCATCT
1 TAAGCTTTGGAAGCTTAGTAAGCCATAAGAAAATAAATCATCT
25531903 TAAGCTTTGGAAGCTTAGTAAGCCATAAGAAAATAAATCATCT
1 TAAGCTTTGGAAGCTTAGTAAGCCATAAGAAAATAAATCATCT
25531946 CAATGATATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (43 bp):
TAAGCTTTGGAAGCTTAGTAAGCCATAAGAAAATAAATCATCT
Found at i:25532493 original size:30 final size:29
Alignment explanation
Indices: 25532434--25532758 Score: 357
Period size: 30 Copynumber: 10.8 Consensus size: 29
25532424 ATCCAATGCT
* *
25532434 CAAATCAATTCGGCAATATATATGTATACATTTA
1 CAAATCAATTCGG---TA-ATATATAT-CATATA
25532468 CAAATCAATTCGGTAATATATATACATATA
1 CAAATCAATTCGGTAATATATAT-CATATA
*
25532498 CAAATCAATTCGGTAATTTATATCAATATA
1 CAAATCAATTCGGTAATATATATC-ATATA
* *
25532528 CAAAT-AATTCGGCAATGTATATCCATATA
1 CAAATCAATTCGGTAATATATAT-CATATA
* * *
25532557 CAAATCAATTCGATTATATTTATCTATATA
1 CAAATCAATTCGGTAATATATATC-ATATA
*
25532587 TAAATCAATTCGGTAATATATATCCATATA
1 CAAATCAATTCGGTAATATATAT-CATATA
* *
25532617 CAAATCAACTCGGTAATTTATATCAATATA
1 CAAATCAATTCGGTAATATATATC-ATATA
*
25532647 CAAATCAATTCGGCAATATATATCCATATA
1 CAAATCAATTCGGTAATATATAT-CATATA
* *
25532677 CAAATCAATTCTGCT-ATATTTATCTATATA
1 CAAATCAATTC-GGTAATATATATC-ATATA
*
25532707 TAAATCAATTCGGTAATATATATCCATATA
1 CAAATCAATTCGGTAATATATAT-CATATA
*
25532737 CAAATCAATTCGGCAATATATA
1 CAAATCAATTCGGTAATATATA
25532759 AAACATATAC
Statistics
Matches: 252, Mismatches: 28, Indels: 26
0.82 0.09 0.08
Matches are distributed among these distances:
29 31 0.12
30 202 0.80
31 6 0.02
34 13 0.05
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.35
Consensus pattern (29 bp):
CAAATCAATTCGGTAATATATATCATATA
Found at i:25532620 original size:60 final size:60
Alignment explanation
Indices: 25532466--25532758 Score: 405
Period size: 60 Copynumber: 4.9 Consensus size: 60
25532456 TGTATACATT
*
25532466 TACAAATCAATTCGGTAATATATATACATATACAAATCAATTCGGTAATTTATATCAATA
1 TACAAATCAATTCGGTAATATATATCCATATACAAATCAATTCGGTAATTTATATCAATA
* * * * *
25532526 TACAAAT-AATTCGGCAATGTATATCCATATACAAATCAATTCGATTATATT-TATCTATA
1 TACAAATCAATTCGGTAATATATATCCATATACAAATCAATTCGGTAAT-TTATATCAATA
* *
25532585 TATAAATCAATTCGGTAATATATATCCATATACAAATCAACTCGGTAATTTATATCAATA
1 TACAAATCAATTCGGTAATATATATCCATATACAAATCAATTCGGTAATTTATATCAATA
* * *
25532645 TACAAATCAATTCGGCAATATATATCCATATACAAATCAATTCTGCT-ATATT-TATCTATA
1 TACAAATCAATTCGGTAATATATATCCATATACAAATCAATTC-GGTAAT-TTATATCAATA
* * *
25532705 TATAAATCAATTCGGTAATATATATCCATATACAAATCAATTCGGCAATATATA
1 TACAAATCAATTCGGTAATATATATCCATATACAAATCAATTCGGTAATTTATA
25532759 AAACATATAC
Statistics
Matches: 203, Mismatches: 23, Indels: 14
0.85 0.10 0.06
Matches are distributed among these distances:
59 53 0.26
60 146 0.72
61 4 0.02
ACGTcount: A:0.43, C:0.15, G:0.06, T:0.35
Consensus pattern (60 bp):
TACAAATCAATTCGGTAATATATATCCATATACAAATCAATTCGGTAATTTATATCAATA
Found at i:25532682 original size:90 final size:90
Alignment explanation
Indices: 25532434--25532758 Score: 393
Period size: 90 Copynumber: 3.6 Consensus size: 90
25532424 ATCCAATGCT
* * * * *
25532434 CAAATCAATTCGGCAATATATATGTATACATTTACAAATCAATTCGGTAATATATATACATATAC
1 CAAATCAATTCGG---TA-ATATATATCCATATACAAATCAATTCGGCAATATATATCCATATAC
*
25532499 AAATCAATTCGGTAATTTATATCAATATA
62 AAATCAATTCGGTAATATATATCAATATA
* * *** * * *
25532528 CAAAT-AATTCGGCAATGTATATCCATATACAAATCAATTCGATTATATTTATCTATATATAAAT
1 CAAATCAATTCGGTAATATATATCCATATACAAATCAATTCGGCAATATATATCCATATACAAAT
*
25532592 CAATTCGGTAATATATATCCATATA
66 CAATTCGGTAATATATATCAATATA
* * *
25532617 CAAATCAACTCGGTAATTTATATCAATATACAAATCAATTCGGCAATATATATCCATATACAAAT
1 CAAATCAATTCGGTAATATATATCCATATACAAATCAATTCGGCAATATATATCCATATACAAAT
* * *
25532682 CAATTCTGCT-ATATTTATCTATATA
66 CAATTC-GGTAATATATATCAATATA
*
25532707 TAAATCAATTCGGTAATATATATCCATATACAAATCAATTCGGCAATATATA
1 CAAATCAATTCGGTAATATATATCCATATACAAATCAATTCGGCAATATATA
25532759 AAACATATAC
Statistics
Matches: 199, Mismatches: 30, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
89 68 0.34
90 117 0.59
91 2 0.01
93 7 0.04
94 5 0.03
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.35
Consensus pattern (90 bp):
CAAATCAATTCGGTAATATATATCCATATACAAATCAATTCGGCAATATATATCCATATACAAAT
CAATTCGGTAATATATATCAATATA
Found at i:25536480 original size:33 final size:33
Alignment explanation
Indices: 25536403--25536528 Score: 130
Period size: 33 Copynumber: 3.8 Consensus size: 33
25536393 CCCACCCATT
* *
25536403 TTTACTGT-CCAAGTGGACTATCTCTTTTTTGTG
1 TTTACTATCCCAA-TGGACTATCTCTGTTTTGTG
* * * *
25536436 TTTATTGTCCCAATGTACTATCTATGTTTTGTG
1 TTTACTATCCCAATGGACTATCTCTGTTTTGTG
** * *
25536469 TTTACTATCCCAGCGGACTATATCTGTTATGTG
1 TTTACTATCCCAATGGACTATCTCTGTTTTGTG
25536502 TTTACTATCCCAATTGG-CTATCTCTGT
1 TTTACTATCCCAA-TGGACTATCTCTGT
25536529 GGATGCCATG
Statistics
Matches: 76, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
33 70 0.92
34 6 0.08
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (33 bp):
TTTACTATCCCAATGGACTATCTCTGTTTTGTG
Found at i:25539034 original size:55 final size:55
Alignment explanation
Indices: 25538971--25539077 Score: 153
Period size: 55 Copynumber: 1.9 Consensus size: 55
25538961 TGAGATTCAT
*
25538971 AAGTTAGTCATAGCACTGAAATTAC-GAGAATTTATGGTTCTATTTGAATGAGTGC
1 AAGTTAGTCAGAGCACTGAAATTACAG-GAATTTATGGTTCTATTTGAATGAGTGC
* * * *
25539026 AAGTTAGTCGGGGCACTGGAATTACAGGAATTTGTGGTTCTATTTGAATGAG
1 AAGTTAGTCAGAGCACTGAAATTACAGGAATTTATGGTTCTATTTGAATGAG
25539078 CGCGGAAATG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
55 45 0.98
56 1 0.02
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (55 bp):
AAGTTAGTCAGAGCACTGAAATTACAGGAATTTATGGTTCTATTTGAATGAGTGC
Found at i:25549291 original size:25 final size:24
Alignment explanation
Indices: 25549257--25549309 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
25549247 AAGTTCAAGT
25549257 GAGCCATATCAGGAAGCTCACAAA
1 GAGCCATATCAGGAAGCTCACAAA
* *
25549281 GAGCCTATATCAGGACGCTCATAAA
1 GAGCC-ATATCAGGAAGCTCACAAA
25549306 GAGC
1 GAGC
25549310 TACGGTATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.15
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCACAAA
Found at i:25555299 original size:20 final size:21
Alignment explanation
Indices: 25555276--25555323 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
25555266 CACTCTCTAG
*
25555276 GCTTTTATCACACTC-GCAAT
1 GCTTTTATCACACTCACCAAT
*
25555296 GCTTTTA--ACCCTCACCAAT
1 GCTTTTATCACACTCACCAAT
25555315 GCTTTTATC
1 GCTTTTATC
25555324 CGCTCATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 5 0.22
19 11 0.48
20 7 0.30
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (21 bp):
GCTTTTATCACACTCACCAAT
Found at i:25558284 original size:16 final size:16
Alignment explanation
Indices: 25558240--25558284 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
25558230 CATTAGGAAT
25558240 CAAATAACTAAAATAAA
1 CAAATAACT-AAATAAA
* *
25558257 TAAATAATTAAATAAA
1 CAAATAACTAAATAAA
*
25558273 CAAATGACTAAA
1 CAAATAACTAAA
25558285 CCAATAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.67, C:0.09, G:0.02, T:0.22
Consensus pattern (16 bp):
CAAATAACTAAATAAA
Found at i:25566645 original size:20 final size:19
Alignment explanation
Indices: 25566590--25566656 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
25566580 GATGCAAAAT
*
25566590 AGGGGCACCAAAGTGCAATC
1 AGGGGCA-CGAAGTGCAATC
* * *
25566610 AGGAGCACGAGTGTGCAACC
1 AGGGGCACGA-AGTGCAATC
*
25566630 AGGGGCATCGAAGTGCATTC
1 AGGGGCA-CGAAGTGCAATC
25566650 AGGGGCA
1 AGGGGCA
25566657 ATGAGGTGCA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
19 2 0.05
20 32 0.86
21 3 0.08
ACGTcount: A:0.30, C:0.22, G:0.36, T:0.12
Consensus pattern (19 bp):
AGGGGCACGAAGTGCAATC
Found at i:25578926 original size:3 final size:3
Alignment explanation
Indices: 25578920--25578976 Score: 51
Period size: 3 Copynumber: 18.7 Consensus size: 3
25578910 CTAAAAAAAG
* * * * * *
25578920 ATA ATA ATA ATA TTA ATTA ATA CTA ATA GTA GTA GTA ATG ATA ATA
1 ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
25578966 ATA ATA ATA AT
1 ATA ATA ATA AT
25578977 TTGGGCCTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:25580820 original size:12 final size:12
Alignment explanation
Indices: 25580803--25580832 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
25580793 AGACATACGA
25580803 CCGTGTCCTAGC
1 CCGTGTCCTAGC
*
25580815 CCGTGTCCTTGC
1 CCGTGTCCTAGC
25580827 CCGTGT
1 CCGTGT
25580833 AACTCTCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.40, G:0.27, T:0.30
Consensus pattern (12 bp):
CCGTGTCCTAGC
Found at i:25585587 original size:2 final size:2
Alignment explanation
Indices: 25585580--25585608 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
25585570 ACCTAACAAA
25585580 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
25585609 TATATATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:25585980 original size:15 final size:15
Alignment explanation
Indices: 25585960--25585991 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
25585950 TTGGATAGGA
25585960 TTTTATTTTATGTTG
1 TTTTATTTTATGTTG
*
25585975 TTTTATTTTATTTTG
1 TTTTATTTTATGTTG
25585990 TT
1 TT
25585992 ATTTTCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (15 bp):
TTTTATTTTATGTTG
Found at i:25585995 original size:13 final size:13
Alignment explanation
Indices: 25585962--25586004 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
25585952 GGATAGGATT
*
25585962 TTATTTTATGTTGTT
1 TTATTTTAT-TT-TG
25585977 TTATTTTATTTTG
1 TTATTTTATTTTG
*
25585990 TTATTTTCTTTTG
1 TTATTTTATTTTG
25586003 TT
1 TT
25586005 TGAAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 15 0.58
14 2 0.08
15 9 0.35
ACGTcount: A:0.12, C:0.02, G:0.09, T:0.77
Consensus pattern (13 bp):
TTATTTTATTTTG
Found at i:25591724 original size:15 final size:15
Alignment explanation
Indices: 25591704--25591735 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
25591694 TTTTGTACTG
25591704 AATTGTAAACAATTA
1 AATTGTAAACAATTA
25591719 AATTGTAAACAATTA
1 AATTGTAAACAATTA
25591734 AA
1 AA
25591736 ATTTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (15 bp):
AATTGTAAACAATTA
Found at i:25594926 original size:24 final size:24
Alignment explanation
Indices: 25594899--25594960 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
25594889 TGGCTCTTCG
*
25594899 GAGCTACCCGTTATTGGCTCGTAT
1 GAGCTTCCCGTTATTGGCTCGTAT
** *
25594923 GAGCTTCCTAATTA-TGGCTCTTAT
1 GAGCTTCC-CGTTATTGGCTCGTAT
25594947 GAGCTTCCCGTTAT
1 GAGCTTCCCGTTAT
25594961 ACAGCCTGGA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
23 3 0.10
24 24 0.80
25 3 0.10
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (24 bp):
GAGCTTCCCGTTATTGGCTCGTAT
Found at i:25599197 original size:19 final size:20
Alignment explanation
Indices: 25599156--25599203 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
25599146 GAGGCACCGG
* * *
25599156 AGTGCAAGCAGAAGCATCGA
1 AGTGCAAACAGAAGCACCAA
25599176 AGTGCAAACAG-AGCACCAA
1 AGTGCAAACAGAAGCACCAA
25599195 AGTGCAAAC
1 AGTGCAAAC
25599204 CCATACAAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.08
Consensus pattern (20 bp):
AGTGCAAACAGAAGCACCAA
Found at i:25600118 original size:11 final size:10
Alignment explanation
Indices: 25600098--25600143 Score: 56
Period size: 11 Copynumber: 4.4 Consensus size: 10
25600088 TGTTTTTATG
25600098 TTTTAACATA
1 TTTTAACATA
25600108 TTTTAAACATA
1 TTTT-AACATA
*
25600119 ATTTAACATTA
1 TTTTAACA-TA
*
25600130 TTTTAACTTA
1 TTTTAACATA
25600140 TTTT
1 TTTT
25600144 TCTCTAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
10 14 0.45
11 17 0.55
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (10 bp):
TTTTAACATA
Found at i:25600533 original size:2 final size:2
Alignment explanation
Indices: 25600520--25600550 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
25600510 ACTTCTTCAA
*
25600520 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25600551 ACTTAATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:25604567 original size:14 final size:14
Alignment explanation
Indices: 25604535--25604595 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 14
25604525 TCACAATTTG
* *
25604535 ATTCTCAATTTCTT
1 ATTCTCGATTTGTT
*
25604549 GTTCTCGATTTGTT
1 ATTCTCGATTTGTT
* *
25604563 ATTCTC-AATTGTCA
1 ATTCTCGATTTGT-T
*
25604577 ATTCTCGATTTTTT
1 ATTCTCGATTTGTT
25604591 ATTCT
1 ATTCT
25604596 AAATTATTCG
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
13 5 0.14
14 27 0.75
15 4 0.11
ACGTcount: A:0.18, C:0.18, G:0.08, T:0.56
Consensus pattern (14 bp):
ATTCTCGATTTGTT
Found at i:25604678 original size:15 final size:16
Alignment explanation
Indices: 25604656--25604692 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
25604646 GTAATAAAAT
*
25604656 ATTATTAAATTATTTA
1 ATTATTAAATTAGTTA
25604672 A-TATT-AATTAGTTA
1 ATTATTAAATTAGTTA
25604686 ATTATTA
1 ATTATTA
25604693 TGATGTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 4
0.78 0.04 0.17
Matches are distributed among these distances:
14 9 0.50
15 8 0.44
16 1 0.06
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (16 bp):
ATTATTAAATTAGTTA
Found at i:25604701 original size:29 final size:28
Alignment explanation
Indices: 25604669--25604801 Score: 74
Period size: 23 Copynumber: 5.1 Consensus size: 28
25604659 ATTAAATTAT
25604669 TTAATATTAATTAGTTAATTATTATGATG
1 TTAATATTAA-TAGTTAATTATTATGATG
* * *
25604698 TTAAGA--AA-AATT-ATT-TAATGAT-
1 TTAATATTAATAGTTAATTATTATGATG
*
25604720 TTAATTTTAAATAGTTAATTATTATGATG
1 TTAATATT-AATAGTTAATTATTATGATG
* * *
25604749 TTAAGA--AA-AATT-ATT-TAATGAT-
1 TTAATATTAATAGTTAATTATTATGATG
* *
25604771 TTAATTTTAAATAGTTAATTATTATGTTG
1 TTAATATT-AATAGTTAATTATTATGATG
25604800 TT
1 TT
25604802 TAGATTAGTA
Statistics
Matches: 74, Mismatches: 16, Indels: 28
0.63 0.14 0.24
Matches are distributed among these distances:
22 8 0.11
23 12 0.16
24 6 0.08
25 10 0.14
26 8 0.11
27 8 0.11
28 11 0.15
29 11 0.15
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.50
Consensus pattern (28 bp):
TTAATATTAATAGTTAATTATTATGATG
Found at i:25604711 original size:51 final size:51
Alignment explanation
Indices: 25604651--25604801 Score: 248
Period size: 51 Copynumber: 2.9 Consensus size: 51
25604641 AAATGGTAAT
* * * *
25604651 AAAATATTATTAAATTATTTAATATTAATTAGTTAATTATTATGATGTTAAG
1 AAAA-ATTATTTAATGATTTAATTTTAAATAGTTAATTATTATGATGTTAAG
25604703 AAAAATTATTTAATGATTTAATTTTAAATAGTTAATTATTATGATGTTAAG
1 AAAAATTATTTAATGATTTAATTTTAAATAGTTAATTATTATGATGTTAAG
*
25604754 AAAAATTATTTAATGATTTAATTTTAAATAGTTAATTATTATGTTGTT
1 AAAAATTATTTAATGATTTAATTTTAAATAGTTAATTATTATGATGTT
25604802 TAGATTAGTA
Statistics
Matches: 94, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
51 90 0.96
52 4 0.04
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (51 bp):
AAAAATTATTTAATGATTTAATTTTAAATAGTTAATTATTATGATGTTAAG
Found at i:25613267 original size:6 final size:6
Alignment explanation
Indices: 25613256--25613282 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
25613246 TTTACACGCT
25613256 ATATAC ATATAC ATATAC ATATAC ATA
1 ATATAC ATATAC ATATAC ATATAC ATA
25613283 ACGTCACCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (6 bp):
ATATAC
Found at i:25618443 original size:21 final size:20
Alignment explanation
Indices: 25618388--25618462 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
25618378 TATTGAAAAA
* * *
25618388 TATAAAAATTAGAATTTTTT
1 TATAAAAATCATAAATTTTT
* *
25618408 TATAGAAATCGTAAATTTTT
1 TATAAAAATCATAAATTTTT
* *
25618428 TATAAAATATTATAAA-ATTT
1 TATAAAA-ATCATAAATTTTT
25618448 TATAAAAATCATAAA
1 TATAAAAATCATAAA
25618463 AAAACTATAA
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
19 7 0.16
20 31 0.70
21 6 0.14
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.43
Consensus pattern (20 bp):
TATAAAAATCATAAATTTTT
Found at i:25618707 original size:19 final size:19
Alignment explanation
Indices: 25618661--25618703 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
25618651 TAGTACGATA
*
25618661 ATTTTTATATTTTTTTATG
1 ATTTTTATATTTCTTTATG
*
25618680 AATTTTATATTTCTTTAT-
1 ATTTTTATATTTCTTTATG
25618698 ATTTTT
1 ATTTTT
25618704 TATAATATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (19 bp):
ATTTTTATATTTCTTTATG
Found at i:25619163 original size:97 final size:92
Alignment explanation
Indices: 25619000--25619192 Score: 237
Period size: 97 Copynumber: 2.0 Consensus size: 92
25618990 AATTGAGTGC
* *
25619000 AAAAAAAAAAGTAAGACTTAATTGCTTTTTTGAAAAAGTTTAAGGACCTTTTTGATGAATTTTGA
1 AAAAAAAAAAGTAAGACTTAATTGCTTTTTTGAAAAAATTTAAGGACCTTTTTGATGAATTGTGA
*
25619065 AAGTTCAAAT-TCCTAATTGAGTGAAAA
66 AAGTTCAAATATCC-AAGTGAGTGAAAA
* ** *
25619092 GAAAAAAAGAAAGT-AGAAGCTTAATTGCTTTTTTTGAAAAAAATTTGAGGGTCTTTTTGATGCA
1 -AAAAAAA-AAAGTAAG-A-CTTAATTGC-TTTTTTG-AAAAAATTTAAGGACCTTTTTGATGAA
*
25619156 TTGTGAAAGTTCAAGTATCCAAGTGAGTGAAAA
60 TTGTGAAAGTTCAAATATCCAAGTGAGTGAAAA
25619189 AAAA
1 AAAA
25619193 TACTTAATTT
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
93 9 0.10
94 6 0.07
95 9 0.10
96 11 0.13
97 48 0.56
98 3 0.03
ACGTcount: A:0.42, C:0.07, G:0.18, T:0.33
Consensus pattern (92 bp):
AAAAAAAAAAGTAAGACTTAATTGCTTTTTTGAAAAAATTTAAGGACCTTTTTGATGAATTGTGA
AAGTTCAAATATCCAAGTGAGTGAAAA
Found at i:25619822 original size:28 final size:29
Alignment explanation
Indices: 25619777--25619865 Score: 83
Period size: 28 Copynumber: 3.0 Consensus size: 29
25619767 ATTTATTTGT
*
25619777 TTAGGGTTTAGTGATTTTAA-AAATTAAA
1 TTAGGGTTTAGGGATTTTAAGAAATTAAA
* *
25619805 TTAGGTTTTAGGGGTTTTAAGTAAATTAATTAA
1 TTAGGGTTTAGGGATTTTAAG-AAATT-A--AA
*
25619838 ATAGGGTTTA-GGATTTTTAAGAAATTAA
1 TTAGGGTTTAGGGA-TTTTAAGAAATTAA
25619866 TTAAATTAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
28 17 0.35
29 1 0.02
30 5 0.10
31 2 0.04
32 7 0.14
33 17 0.35
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (29 bp):
TTAGGGTTTAGGGATTTTAAGAAATTAAA
Found at i:25619856 original size:33 final size:33
Alignment explanation
Indices: 25619798--25619888 Score: 130
Period size: 33 Copynumber: 2.8 Consensus size: 33
25619788 TGATTTTAAA
* **
25619798 AATTAAATTAGGTTTTAGGGGTTTTAAGTAAATT
1 AATTAAATTAGGGTTTAGGATTTTTAAG-AAATT
25619832 AATTAAA-TAGGGTTTAGGATTTTTAAGAAATT
1 AATTAAATTAGGGTTTAGGATTTTTAAGAAATT
*
25619864 AATTAAATTAGTGTTTAGGATTTTT
1 AATTAAATTAGGGTTTAGGATTTTT
25619889 TAAAAATAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
32 12 0.23
33 33 0.63
34 7 0.13
ACGTcount: A:0.36, C:0.00, G:0.19, T:0.45
Consensus pattern (33 bp):
AATTAAATTAGGGTTTAGGATTTTTAAGAAATT
Found at i:25619905 original size:28 final size:31
Alignment explanation
Indices: 25619777--25619909 Score: 95
Period size: 33 Copynumber: 4.4 Consensus size: 31
25619767 ATTTATTTGT
*
25619777 TTAGGGTTTAGTGA-TTTTAA-AAATTAA--A
1 TTAGTGTTTAG-GATTTTTAAGAAATTAATTA
**
25619805 TTAG-GTTTTAGGGGTTTTAAGTAAATTAATTAA
1 TTAGTG-TTTAGGATTTTTAAG-AAATTAATT-A
* *
25619838 ATAGGGTTTAGGATTTTTAAGAAATTAATTAAA
1 TTAGTGTTTAGGATTTTTAAGAAATTAATT--A
25619871 TTAGTGTTTAGGATTTTTTAA-AAA-TAATT-
1 TTAGTGTTTAGGA-TTTTTAAGAAATTAATTA
25619900 TT-GTGTTTAG
1 TTAGTGTTTAG
25619910 CTTTTAGGGT
Statistics
Matches: 89, Mismatches: 6, Indels: 20
0.77 0.05 0.17
Matches are distributed among these distances:
27 2 0.02
28 23 0.26
29 2 0.02
30 7 0.08
32 14 0.16
33 33 0.37
34 8 0.09
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (31 bp):
TTAGTGTTTAGGATTTTTAAGAAATTAATTA
Found at i:25620136 original size:14 final size:14
Alignment explanation
Indices: 25620119--25620161 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
25620109 CTATAGTAGT
25620119 TTTTGAAAAAATAA
1 TTTTGAAAAAATAA
* *
25620133 TTTTGAGAAAAT-T
1 TTTTGAAAAAATAA
25620146 TTTCTGAAAAAATAA
1 TTT-TGAAAAAATAA
25620161 T
1 T
25620162 GTTAAAAACG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 3 0.13
14 19 0.83
15 1 0.04
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (14 bp):
TTTTGAAAAAATAA
Found at i:25620262 original size:126 final size:126
Alignment explanation
Indices: 25619979--25620498 Score: 609
Period size: 126 Copynumber: 4.1 Consensus size: 126
25619969 ACTTTGTTTT
* * * * **
25619979 TTTTTCTATAGTAGTT-TCTGAAAAATTAATTTTGAGCAGATGGTTT-TGAAAAAATAGTGACAA
1 TTTTTCTACAGTAGTTCT-TGAAAAAATAATTTTGAGAAGA-CGTTTCTGAAAAAATAGTGTTAA
* * *
25620042 AAACGCTTCAAGCAGGATGCACCGTCAGCAAAAGTACT-AAAAAAGTTCCTACGTGGACGCTC
64 AAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTC
* * * ** *
25620104 TTTTTCTATAGTAGTTTTTGAAAAAATAATTTTGAGAAAATTTTTCTGAAAAAATAATGTTAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGTTTCTGAAAAAATAGTGTTAAAA
* * *
25620169 ACGCATCAAGCAGTATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGTTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTC
* * * *
25620230 TTTTTCTACAATAGTTCTTGAAAAAATAATTTTGAGAAGACGATTCTTAAAAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGTTTCTGAAAAAATAGTGTTAAAA
* * *
25620295 ACGCTTCAAGTAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTCCCACGTAGG-CGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGT-GGACGCTC
* * * *
25620356 TTTTTCTACAGTAGTTCCTGAAAAACTAATTTTAAGAAGACAG-TTATGAAAAAATAGTGTTAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGAC-GTTTCTGAAAAAATAGTGTTAAA
** * * * * ** *
25620420 AACGCTTCAAATAGGATGCGCTATCAGCAAAATTACTGAAAAAAAGATCCCATATGGATGCTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTG-AAAAAAGCTCCCACGTGGACGCTC
*
25620483 TTTTTCTATAGTAGTT
1 TTTTTCTACAGTAGTT
25620499 TCTACTTGGC
Statistics
Matches: 342, Mismatches: 46, Indels: 12
0.86 0.12 0.03
Matches are distributed among these distances:
124 3 0.01
125 84 0.25
126 220 0.64
127 35 0.10
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGTTTCTGAAAAAATAGTGTTAAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTC
Found at i:25625587 original size:26 final size:24
Alignment explanation
Indices: 25625533--25625586 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 24
25625523 ACTGTTATAA
* *
25625533 AAAATTATAAAATAAAAATTAATT
1 AAAATTACAAAATAAAAAATAATT
25625557 AAAATTACATAAATGAAAAAATATATT
1 AAAATTACA-AAAT-AAAAAATA-ATT
25625584 AAA
1 AAA
25625587 TAATATTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.32
25 4 0.16
26 7 0.28
27 6 0.24
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AAAATTACAAAATAAAAAATAATT
Found at i:25625825 original size:23 final size:23
Alignment explanation
Indices: 25625799--25625842 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
25625789 AAAGCTTTTG
*
25625799 TAATACCTCAAAAAGTACTACTA
1 TAATACCCCAAAAAGTACTACTA
* *
25625822 TAATACCCCGAAAATTACTAC
1 TAATACCCCAAAAAGTACTAC
25625843 AGTAAGAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.25, G:0.05, T:0.25
Consensus pattern (23 bp):
TAATACCCCAAAAAGTACTACTA
Found at i:25628090 original size:17 final size:18
Alignment explanation
Indices: 25628076--25628159 Score: 80
Period size: 19 Copynumber: 4.4 Consensus size: 18
25628066 ATAATCTTCG
25628076 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
25628094 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
*
25628113 TATGATATATGCAATCTTAGA
1 -A-G-GATATGCAATCTTAGA
* *
25628134 TATGATATGTAATCTTAGA
1 -AGGATATGCAATCTTAGA
25628153 A-GATATG
1 AGGATATG
25628160 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 33 0.58
21 17 0.30
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:25628102 original size:19 final size:19
Alignment explanation
Indices: 25628078--25628152 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
25628068 AATCTTCGAG
25628078 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
25628097 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
25628116 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
25628137 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
25628153 AGATATGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 34 0.64
21 19 0.36
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:25628124 original size:21 final size:21
Alignment explanation
Indices: 25628079--25628141 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
25628069 ATCTTCGAGG
25628079 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
25628098 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
25628119 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
25628140 AT
1 AT
25628142 GTAATCTTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.45
21 23 0.55
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:25628171 original size:23 final size:22
Alignment explanation
Indices: 25628091--25628175 Score: 81
Period size: 21 Copynumber: 4.0 Consensus size: 22
25628081 ATGCAATCTT
*
25628091 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
25628112 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
25628131 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
25628153 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
25628176 GATTTAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.04
19 14 0.26
21 15 0.28
22 10 0.19
23 13 0.24
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:25628185 original size:22 final size:23
Alignment explanation
Indices: 25628141--25628185 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
25628131 AGATATGATA
*
25628141 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
25628164 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
25628186 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:25628613 original size:15 final size:15
Alignment explanation
Indices: 25628589--25628626 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
25628579 GTTTTTAGTC
25628589 TATT-TTATTAATTT
1 TATTATTATTAATTT
* *
25628603 TGTTATTATTATTTT
1 TATTATTATTAATTT
25628618 TATTATTAT
1 TATTATTAT
25628627 ATTATATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 3 0.15
15 17 0.85
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:25628620 original size:12 final size:12
Alignment explanation
Indices: 25628591--25628641 Score: 50
Period size: 12 Copynumber: 4.0 Consensus size: 12
25628581 TTTTAGTCTA
25628591 TTTTATTAATT-T
1 TTTTATT-ATTAT
*
25628603 TGTTATTATTAT
1 TTTTATTATTAT
25628615 TTTTATTATTAT
1 TTTTATTATTAT
25628627 ATTATATATTATTAT
1 -TT-T-TATTATTAT
25628642 ACCTACATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
11 3 0.09
12 18 0.55
13 2 0.06
14 1 0.03
15 9 0.27
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTTATTATTAT
Found at i:25628636 original size:15 final size:13
Alignment explanation
Indices: 25628605--25628642 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 13
25628595 ATTAATTTTG
25628605 TTATTATTAT-TT
1 TTATTATTATATT
25628617 TTATTATTATATT
1 TTATTATTATATT
25628630 ATATATTATTATA
1 -T-TATTATTATA
25628643 CCTACATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.43
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTATTATTATATT
Found at i:25635011 original size:44 final size:44
Alignment explanation
Indices: 25634963--25635194 Score: 130
Period size: 44 Copynumber: 5.3 Consensus size: 44
25634953 AGACACCAGC
25634963 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGCTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGCTAAAAATAGCAGAT
* **** * * ** * * *
25635007 CTTGCCTTCCTGCACCGACAGCGAAGCA-GATCGAAGTCACCAG-C
1 CTTGCCTCCCTGGGTTG-CAGCGGAGCAGGCTAAAAAT-AGCAGAT
*
25635051 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGCTGAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGCTAAAAATAGCAGAT
* **** * ** * * ** * * *
25635095 CTTGCCTTCCTGCACCGACAACAAAGTA-GATCGAAGTCACCAG-C
1 CTTGCCTCCCTGGGTTG-CAGCGGAGCAGGCTAAAAAT-AGCAGAT
*
25635139 CTTGCCTCCCTGGGTTGCAGTGGAGCAGGCTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGCTAAAAATAGCAGAT
*
25635183 CTTGCCTTCCTG
1 CTTGCCTCCCTG
25635195 CACCGACAAC
Statistics
Matches: 124, Mismatches: 56, Indels: 16
0.63 0.29 0.08
Matches are distributed among these distances:
43 22 0.18
44 79 0.64
45 23 0.19
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (44 bp):
CTTGCCTCCCTGGGTTGCAGCGGAGCAGGCTAAAAATAGCAGAT
Found at i:25635059 original size:88 final size:88
Alignment explanation
Indices: 25634910--25635213 Score: 518
Period size: 88 Copynumber: 3.5 Consensus size: 88
25634900 ATCAGTGAAG
* * * * *
25634910 ATAGCAGATCTTGCCTTCCTGTACTGGCAACGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGTCACCAGCCTTGCCTCCCTG
25634975 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
*
25634998 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGTCACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGTCACCAGCCTTGCCTCCCTG
*
25635063 GGTTGCAGCGGAGCAGGCTGAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* *
25635086 ATAGCAGATCTTGCCTTCCTGCACCGACAACAAAGTAGATCGAAGTCACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGTCACCAGCCTTGCCTCCCTG
*
25635151 GGTTGCAGTGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
25635174 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGAT
1 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGAT
25635214 TAATGACCCT
Statistics
Matches: 202, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 202 1.00
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.19
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGTCACCAGCCTTGCCTCCCTG
GGTTGCAGCGGAGCAGGCTAAAA
Found at i:25635291 original size:44 final size:44
Alignment explanation
Indices: 25635227--25635514 Score: 299
Period size: 44 Copynumber: 6.7 Consensus size: 44
25635217 TGACCCTAGC
25635227 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
* * *
25635271 TCTATCTCCCTAAG-CAGCAGTGGAATAGATT--A-A---AGAAT
1 CCTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
* * * *
25635309 CCTATCTCCCTAGACAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
25635353 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
* * * *
25635397 TCTATCTCCCTAGG-CAGCAATGGAATAGATTGAAGATTGTA-AGT
1 CCTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTG-AGAAT
* * * * * * *
25635441 CCTATATCCCTGGTCAGTAGTGGAATAAGTTGTAGATCGTGAAC
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
*
25635485 CCTATCTCCCTGAG-CAGCAGTGGAGTAGGT
1 CCTATCTCCCTG-GTCAGCAGTGGAATAGGT
25635515 GGAAAATAGA
Statistics
Matches: 202, Mismatches: 29, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
37 2 0.01
38 31 0.15
40 1 0.00
41 2 0.01
42 1 0.00
43 2 0.01
44 158 0.78
45 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
Found at i:25635327 original size:82 final size:85
Alignment explanation
Indices: 25635227--25635467 Score: 267
Period size: 82 Copynumber: 2.8 Consensus size: 85
25635217 TGACCCTAGC
* * *
25635227 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAAG-CAGCAG
1 CCTATCTCCCTAGACAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCT-AGTCAGCAG
25635291 TGGAATAGATT-A-A-AGAAT
65 TGGAATAGATTAAGATAGAAT
* * *
25635309 CCTATCTCCCTAGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGT
1 CCTATCTCCCTAGACAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCTAGTCAGCAGT
*
25635374 GGAATAGGTTGAAGATTGAGAAT
66 GGAATAGATT-AAGA-T-AGAAT
* * * * * * * *
25635397 TCTATCTCCCTAGGCAGCAATGGAATAGATTGAAGATTGTA-AGTCCTATATCCCTGGTCAGTAG
1 CCTATCTCCCTAGACAGCAGTGGAATAGGTTGAAGATTG-AGAATCCTATCTCCCTAGTCAGCAG
25635461 TGGAATA
65 TGGAATA
25635468 AGTTGTAGAT
Statistics
Matches: 135, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
81 1 0.01
82 66 0.49
84 1 0.01
85 1 0.01
88 66 0.49
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (85 bp):
CCTATCTCCCTAGACAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCTAGTCAGCAGT
GGAATAGATTAAGATAGAAT
Done.