Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64140413
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 820884 characters in sequence are not A, C, G, or T
File 90 of 208
Found at i:26593587 original size:18 final size:19
Alignment explanation
Indices: 26593561--26593609 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
26593551 ACAAAAATGA
*
26593561 TTTATAATATTTTTAA-AAT
1 TTTA-AATATTTATAATAAT
*
26593580 TTTAAATATATATAATAAT
1 TTTAAATATTTATAATAAT
26593599 TTTAAA-ATTTA
1 TTTAAATATTTA
26593610 GTGTTGTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTAAATATTTATAATAAT
Found at i:26594459 original size:13 final size:12
Alignment explanation
Indices: 26594435--26594500 Score: 51
Period size: 13 Copynumber: 5.0 Consensus size: 12
26594425 TTGTGTAAAG
*
26594435 TATGTTAAATAT
1 TATGTAAAATAT
26594447 TAGTGTAAAATAT
1 TA-TGTAAAATAT
*
26594460 ACTATATAAAAATTAT
1 --TATGT-AAAA-TAT
*
26594476 TATGTTAAATAT
1 TATGTAAAATAT
26594488 TAGTGTAAAATAT
1 TA-TGTAAAATAT
26594501 ACTATATAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
12 7 0.16
13 21 0.49
14 6 0.14
15 6 0.14
16 3 0.07
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (12 bp):
TATGTAAAATAT
Found at i:26594514 original size:41 final size:41
Alignment explanation
Indices: 26594435--26594514 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
26594425 TTGTGTAAAG
26594435 TATGTTAAATATTAGTGTAAAATATACTATATAAAAATTAT
1 TATGTTAAATATTAGTGTAAAATATACTATATAAAAATTAT
26594476 TATGTTAAATATTAGTGTAAAATATACTATATAAAAATT
1 TATGTTAAATATTAGTGTAAAATATACTATATAAAAATT
26594515 TCAAGAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (41 bp):
TATGTTAAATATTAGTGTAAAATATACTATATAAAAATTAT
Found at i:26595721 original size:11 final size:11
Alignment explanation
Indices: 26595705--26595737 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
26595695 ACTCAAAGCC
26595705 AAAAAAAA-AA
1 AAAAAAAAGAA
*
26595715 GAAAAAAAGAA
1 AAAAAAAAGAA
26595726 AAAAAAAAGAA
1 AAAAAAAAGAA
26595737 A
1 A
26595738 GAGTAGCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 7 0.35
11 13 0.65
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:26597405 original size:20 final size:20
Alignment explanation
Indices: 26597380--26597420 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
26597370 ATATTAAATA
26597380 CTCATTTTTCAGAAATGCAG
1 CTCATTTTTCAGAAATGCAG
26597400 CTCATTTTTCAGAAATGCAG
1 CTCATTTTTCAGAAATGCAG
26597420 C
1 C
26597421 GGAAAAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (20 bp):
CTCATTTTTCAGAAATGCAG
Found at i:26599764 original size:20 final size:20
Alignment explanation
Indices: 26599737--26599788 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
26599727 TATGAACCAC
26599737 TCCATTTACTTACTTTCCAT
1 TCCATTTACTTACTTTCCAT
*
26599757 TTCATTTACTTACTTTCCAT
1 TCCATTTACTTACTTTCCAT
26599777 TCCATTTACTTA
1 TCCATTTACTTA
26599789 GCATAAGCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.21, C:0.27, G:0.00, T:0.52
Consensus pattern (20 bp):
TCCATTTACTTACTTTCCAT
Found at i:26614631 original size:33 final size:33
Alignment explanation
Indices: 26614592--26614945 Score: 172
Period size: 33 Copynumber: 10.5 Consensus size: 33
26614582 ATCAGTGGAT
*
26614592 TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
1 TCAGCACTTAGCAACCACCAATAAGTCGGGGAA
* * *
26614625 TTAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGG-T
1 TCAGCACTTAGCAACCAC---CA-A--TAAG-T-C-G-GGGAA
* *
26614667 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
1 TCAGCACTTAGCAACCACCAATAAGTCGGGGAA
*
26614700 TCAGCACTTAGCAACC-CC--T-CG--GGGGAA
1 TCAGCACTTAGCAACCACCAATAAGTCGGGGAA
* *
26614727 TCAGCACATAGCAACCCCTTCACATTTAAGATACGGTGGAA
1 TCAGCACTTAGCAACCAC--CA-A--TAAG-T-CGG-GGAA
*
26614768 TCAGCACTTAGCAACCACCAATCAGTCGGGGAA
1 TCAGCACTTAGCAACCACCAATAAGTCGGGGAA
*
26614801 TCAGCACTTAGCAACC-CC--T---TGGGGGAA
1 TCAGCACTTAGCAACCACCAATAAGTCGGGGAA
* * *
26614828 TCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGAAA
1 TCAGCACTTAGCAA-CCAC--CA-A--T-AAGT-CGG-GGAA
*
26614870 TCAGCACTTAGCAACCACCAATGAA-TAGGGGAA
1 TCAGCACTTAGCAACCACCAAT-AAGTCGGGGAA
*
26614903 TCAGCACTTAGCAACC-CC--T---TGGGGGAA
1 TCAGCACTTAGCAACCACCAATAAGTCGGGGAA
26614930 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
26614946 CCCTTTTTAT
Statistics
Matches: 257, Mismatches: 24, Indels: 86
0.70 0.07 0.23
Matches are distributed among these distances:
27 65 0.25
28 3 0.01
29 1 0.00
30 4 0.02
31 1 0.00
32 9 0.04
33 72 0.28
34 6 0.02
35 4 0.02
36 12 0.05
37 1 0.00
38 3 0.01
39 9 0.04
40 4 0.02
41 26 0.10
42 34 0.13
43 3 0.01
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (33 bp):
TCAGCACTTAGCAACCACCAATAAGTCGGGGAA
Found at i:26614730 original size:27 final size:27
Alignment explanation
Indices: 26614694--26614745 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
26614684 CCAATGATTC
*
26614694 GGGGAATCAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACATAGCAACCCCTCG
26614721 GGGGAATCAGCACATAGCAACCCCT
1 GGGGAATCAGCACATAGCAACCCCT
26614746 TCACATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.33, G:0.25, T:0.13
Consensus pattern (27 bp):
GGGGAATCAGCACATAGCAACCCCTCG
Found at i:26614948 original size:102 final size:102
Alignment explanation
Indices: 26614619--26614950 Score: 540
Period size: 102 Copynumber: 3.3 Consensus size: 102
26614609 CCAATGAGTC
* * * **
26614619 GGGGAATTAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGGTTCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
* *
26614684 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
66 CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
*
26614721 GGGGAATCAGCACATAGCAA-CCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
* *
26614785 CCAATCAGTCGGGGAATCAGCACTTAGCAACCCCTTG
66 CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
* *
26614822 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGAAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
*
26614887 CCAATGAATAGGGGAATCAGCACTTAGCAACCCCTTG
66 CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
26614924 GGGGAATCAGCACTTAGCAACCCCCTT
1 GGGGAATCAGCACTTAGCAACCCCCTT
26614951 TTTATTCAAT
Statistics
Matches: 214, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
101 93 0.43
102 121 0.57
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.20
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
Found at i:26621667 original size:33 final size:33
Alignment explanation
Indices: 26621621--26621941 Score: 167
Period size: 33 Copynumber: 9.7 Consensus size: 33
26621611 TTAACCGTTA
*
26621621 TCGGTGGATTCAGCACTTAGCAACCACCAATGAG
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAG
* * *
26621655 TCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAG
1 TCGGGGAATCAGCACTTAGCAACCAC---CA-A--TGAG
** *
26621694 ATACGGTGGGTTCAGCACTTAGCAACCACCAATGAT
1 -T-CGG-GGAATCAGCACTTAGCAACCACCAATGAG
* *
26621730 TCGGGGAATCAACACTTAGCAACC-CC--T-CG
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAG
* * *
26621759 --GGGGAATCAGCAC-AAGCAACCCCCTTCACATTTAAG
1 TCGGGGAATCAGCACTTAGCAA-CCAC--CA-A--TGAG
**
26621795 ATACGGTGGAATCAGCACTTAGCAACCATAAATGAG
1 -T-CGG-GGAATCAGCACTTAGCAACCACCAATGAG
*
26621831 TCGGGGAATCAGCACTTAGTAACC-CC--T---
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAG
* *
26621858 TGGGGGAATCAGCACTTAGCAACCACCAATGAA
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAG
*
26621891 TAGGGGAATCAGCACTTAGCAACC-CC--T---
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAG
*
26621918 TGGGGGAATCAGCACTTAGCAACC
1 TCGGGGAATCAGCACTTAGCAACC
26621942 CCCTTTTTAT
Statistics
Matches: 226, Mismatches: 30, Indels: 69
0.70 0.09 0.21
Matches are distributed among these distances:
26 5 0.02
27 59 0.26
28 3 0.01
30 5 0.02
32 4 0.02
33 79 0.35
34 9 0.04
35 3 0.01
36 8 0.04
37 1 0.00
38 2 0.01
39 6 0.03
40 3 0.01
41 15 0.07
42 24 0.11
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (33 bp):
TCGGGGAATCAGCACTTAGCAACCACCAATGAG
Found at i:26621787 original size:101 final size:102
Alignment explanation
Indices: 26621658--26621881 Score: 351
Period size: 101 Copynumber: 2.2 Consensus size: 102
26621648 CAATGAGTCA
* **
26621658 GGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGTTCAGCACTTAGCAACCAC
1 GGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCAC
* *
26621723 CAATGATTCGGGGAATCAACACTTAGCAACCCCTCGG
66 AAATGAGTCGGGGAATCAACACTTAGCAACCCCTCGG
* *
26621760 GGGAATCAGCAC-AAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCAT
1 GGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCAC
* * *
26621824 AAATGAGTCGGGGAATCAGCACTTAGTAACCCCTTGG
66 AAATGAGTCGGGGAATCAACACTTAGCAACCCCTCGG
26621861 GGGAATCAGCACTTAGCAACC
1 GGGAATCAGCACTTAGCAACC
26621882 ACCAATGAAT
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 91 0.83
102 19 0.17
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.20
Consensus pattern (102 bp):
GGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCAC
AAATGAGTCGGGGAATCAACACTTAGCAACCCCTCGG
Found at i:26621867 original size:27 final size:27
Alignment explanation
Indices: 26621833--26621943 Score: 150
Period size: 27 Copynumber: 3.9 Consensus size: 27
26621823 TAAATGAGTC
*
26621833 GGGGAATCAGCACTTAGTAACCCCTTG
1 GGGGAATCAGCACTTAGCAACCCCTTG
*
26621860 GGGGAATCAGCACTTAGCAACCACCAATGAATA
1 GGGGAATCAGCACTTAGCAACC-CC--T---TG
26621893 GGGGAATCAGCACTTAGCAACCCCTTG
1 GGGGAATCAGCACTTAGCAACCCCTTG
26621920 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
26621944 CTTTTTATTC
Statistics
Matches: 75, Mismatches: 3, Indels: 12
0.83 0.03 0.13
Matches are distributed among these distances:
27 46 0.61
28 2 0.03
30 2 0.03
32 2 0.03
33 23 0.31
ACGTcount: A:0.31, C:0.28, G:0.24, T:0.17
Consensus pattern (27 bp):
GGGGAATCAGCACTTAGCAACCCCTTG
Found at i:26621897 original size:60 final size:60
Alignment explanation
Indices: 26621802--26621941 Score: 235
Period size: 60 Copynumber: 2.3 Consensus size: 60
26621792 AAGATACGGT
* * * *
26621802 GGAATCAGCACTTAGCAACCATAAATGAGTCGGGGAATCAGCACTTAGTAACCCCTTGGG
1 GGAATCAGCACTTAGCAACCACAAATGAATAGGGGAATCAGCACTTAGCAACCCCTTGGG
*
26621862 GGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTTGGG
1 GGAATCAGCACTTAGCAACCACAAATGAATAGGGGAATCAGCACTTAGCAACCCCTTGGG
26621922 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
26621942 CCCTTTTTAT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 75 1.00
ACGTcount: A:0.33, C:0.26, G:0.24, T:0.18
Consensus pattern (60 bp):
GGAATCAGCACTTAGCAACCACAAATGAATAGGGGAATCAGCACTTAGCAACCCCTTGGG
Found at i:26627831 original size:93 final size:91
Alignment explanation
Indices: 26627699--26627979 Score: 420
Period size: 93 Copynumber: 3.0 Consensus size: 91
26627689 AACATTATAT
* *
26627699 AATTATTAAACTAAG-TTTTTTTGATAATATGTTTAGATATAACAAATTAAAGTATTTTTGAATA
1 AATTATTAAACTAAGCTTTATTTGATAATATGTTTTGATATAACAAATTAAA-TATTTTTG-ATA
26627763 AAAGTTAAAGTTGAACAAAATTGGACAA
64 AAAGTTAAAGTTGAACAAAATTGGACAA
* *
26627791 AATTATTAAACTAAGCTTCATTTGATAATATGTTTTGATATAACAAATTATAATGTTTTTGCATA
1 AATTATTAAACTAAGCTTTATTTGATAATATGTTTTGATATAACAAATTA-AATATTTTTG-ATA
* *
26627856 AAAGTTAAAGTTGAAAAAAATTGGGCAA
64 AAAGTTAAAGTTGAACAAAATTGGACAA
* *
26627884 AATTGTTAAACTAAGCTTTATTTGATAATATGTTTTGATATAACAAATTAAAATATTTTTGAGAA
1 AATTATTAAACTAAGCTTTATTTGATAATATGTTTTGATATAACAAATT-AAATATTTTTGATAA
* *
26627949 AAGTTAAAGTTGAACAAAATTAGATAA
65 AAGTTAAAGTTGAACAAAATTGGACAA
26627976 AATT
1 AATT
26627980 GATAAAATCA
Statistics
Matches: 171, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
92 45 0.26
93 123 0.72
94 3 0.02
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (91 bp):
AATTATTAAACTAAGCTTTATTTGATAATATGTTTTGATATAACAAATTAAATATTTTTGATAAA
AGTTAAAGTTGAACAAAATTGGACAA
Found at i:26628153 original size:21 final size:21
Alignment explanation
Indices: 26628127--26628167 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
26628117 CAATGATTTA
26628127 CAAAATGTGTCGATACCTTTC
1 CAAAATGTGTCGATACCTTTC
26628148 CAAAATGTGTCGATACCTTT
1 CAAAATGTGTCGATACCTTT
26628168 TATCAGGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (21 bp):
CAAAATGTGTCGATACCTTTC
Found at i:26633284 original size:645 final size:646
Alignment explanation
Indices: 26632042--26633321 Score: 2055
Period size: 645 Copynumber: 2.0 Consensus size: 646
26632032 TTAGGGGGTT
* * *
26632042 ACAATAAATCTAAATTTAAAAGAATAACTAAGTTGATTTCCAAATAATAATGAAGGATTTTTAAC
1 ACAATAAATCTAAATTTAAAAGAATAAATAAGTTGATTTCCAAAAAATAATGAAGGATATTTAAC
* *
26632107 AAGTTTTCAAAGTTATCCTGATCGTTTTTAAGTGAAATAGTAGTATGTGTTTTAAAAAATGAACG
66 AAGTTTTCAAAGTTATCCTGATCGTTTTTAAATGAAATAATAGTATGTGTTTTAAAAAATGAACG
* * ** *
26632172 AATGTGCTTCAACTAAATGTTTTTGCCATATTTATGACCCATGTGGTCGCTTAGATCGGGTTGTA
131 AATGTGCTTCAACTAAATGTTTCTACCATATTTATGACCCATGTAATCGCTTAGATCGGGTCGTA
* **
26632237 ATGTCTAGGCCTGGTTTGAGGGGTTACATTTAGTGGTATTAGAGTCGGGTTCAATACTTGAACTA
196 ATGTCTAGGCCTGGTTTGAAGGGTTACATTTAGTGGTATTAGAACCGGGTTCAATACTTGAACTA
*
26632302 TGGGTAAAGTATTTTAAAAAAACTACATGCATTATAAAAGGGTATTTTGGGAAAAACATGCCACA
261 TGGGTAAAGTATTTTAAAAAAACTACATGCATTATAAAAGGGTATTTTGGGAAAAACACGCCACA
*
26632367 TGTTAAAATTGTTGTAAAAAAATTCGAGACTCCCGAAGCTGATCTAAGGTAAGTGTTCTTTAGAT
326 TGTTAAAATTGTTGTAAAAAAATTCGAGACTCCCGAAGCCGATCTAAGGTAAGTGTTCTTTAGAT
* *
26632432 TTGAAAACTATAGACTGTGAAAACTCTATTTAGTGAAAACGATAGATAGTGAGACAGGTGTAAAT
391 TTGAAAACTATAGACTGTGAAAACTCTATATAGTGAAAACGATAGATAGTGAGACAAGTGTAAAT
* * * * *
26632497 TGTAATGAATCTTTGATTAAAATTATTCAAGTGATAACATCAAAACTTACCTCTATTGACAGAAA
456 TGAAATGAATCTTCGATTAAAATTATTCAAGTGATAACATAAAAACTTACCTATATTAACAGAAA
* ** *
26632562 ATTCATAAAACTTAAAATGAGTACTCGTGAAGTTAGAACTTGAGGAATGAGAACTCATGGAGAAC
521 ATTCATAAAACTGAAAATGAGTACTCCAGAAGTTAGAACTTGAGGAATGAGAACTCATAGAGAAC
*
26632627 AGGGTCAGGGAACCCAAATCGACTCATCTGCATCCCAATTGCAAACCCCTGAGTGAGCAAC
586 AGGGTCAGGGAACCCAAATCGACTCATCTGCATCCCAAGTGCAAACCCCTGAGTGAGCAAC
*
26632688 ACAATAAATCTGAATTTAAAAGAATAAATAAGTTGATTTCCAAAAAATAATGAAGGATATTTAAC
1 ACAATAAATCTAAATTTAAAAGAATAAATAAGTTGATTTCCAAAAAATAATGAAGGATATTTAAC
*
26632753 AAGTTTTTGAAA-TTATCCTGATCGTTTTTAAATGAAATAATAGTATGTGTTTTAAAAAATGAAC
66 AAG-TTTTCAAAGTTATCCTGATCGTTTTTAAATGAAATAATAGTATGTGTTTTAAAAAATGAAC
26632817 GAATGTGCTTCAACTAAATGTTTCTACCATATTTATGACCCATGTAATCGCTTAGATCGGGTCGT
130 GAATGTGCTTCAACTAAATGTTTCTACCATATTTATGACCCATGTAATCGCTTAGATCGGGTCGT
* * *
26632882 AATGTTTAGGCCTGGTTTGAAGGGTTACATTTAGTTGTATTAGAACCTGGTTCAATACTTGAACT
195 AATGTCTAGGCCTGGTTTGAAGGGTTACATTTAGTGGTATTAGAACCGGGTTCAATACTTGAACT
** *
26632947 ATGGGTAAAGTATTTTCGAAAAA-TACATGCATTATAAAGGGGTATTTTGGGAAAAACACGCCAC
260 ATGGGTAAAGTATTTTAAAAAAACTACATGCATTATAAAAGGGTATTTTGGGAAAAACACGCCAC
* *
26633011 ATGTTAAAATTGTTGTAAAAAAATTTGAGACTCCCGAAGCCGATCTGAGGTAAGTGTTCTTTAGA
325 ATGTTAAAATTGTTGTAAAAAAATTCGAGACTCCCGAAGCCGATCTAAGGTAAGTGTTCTTTAGA
* *
26633076 TTTGAAAACTATAGACTGTGAAAACTCTATATAGTGAAAATGGTAGATAGTGAGACAAGTGTAAA
390 TTTGAAAACTATAGACTGTGAAAACTCTATATAGTGAAAACGATAGATAGTGAGACAAGTGTAAA
*
26633141 TTGAAATGAATCTTCGATTAAAATTATTCAAGTGATAACATAAAAACTTACCTATATTAATAGAA
455 TTGAAATGAATCTTCGATTAAAATTATTCAAGTGATAACATAAAAACTTACCTATATTAACAGAA
* **
26633206 AATTCATAAAACTGAAAATGAGTACTCCCAG-AGTTAGAACTCT-TGGAATGAGAACTTGTAGAG
520 AATTCATAAAACTGAAAATGAGTACT-CCAGAAGTTAGAACT-TGAGGAATGAGAACTCATAGAG
* * * * * * *
26633269 AATAGGGTTAGGGAACCCAGATCGAGTTATTTGCATCCCAAGTGCGAACCCCT
583 AACAGGGTCAGGGAACCCAAATCGACTCATCTGCATCCCAAGTGCAAACCCCT
26633322 AAGAGACCAA
Statistics
Matches: 581, Mismatches: 50, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
645 317 0.55
646 257 0.44
647 7 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (646 bp):
ACAATAAATCTAAATTTAAAAGAATAAATAAGTTGATTTCCAAAAAATAATGAAGGATATTTAAC
AAGTTTTCAAAGTTATCCTGATCGTTTTTAAATGAAATAATAGTATGTGTTTTAAAAAATGAACG
AATGTGCTTCAACTAAATGTTTCTACCATATTTATGACCCATGTAATCGCTTAGATCGGGTCGTA
ATGTCTAGGCCTGGTTTGAAGGGTTACATTTAGTGGTATTAGAACCGGGTTCAATACTTGAACTA
TGGGTAAAGTATTTTAAAAAAACTACATGCATTATAAAAGGGTATTTTGGGAAAAACACGCCACA
TGTTAAAATTGTTGTAAAAAAATTCGAGACTCCCGAAGCCGATCTAAGGTAAGTGTTCTTTAGAT
TTGAAAACTATAGACTGTGAAAACTCTATATAGTGAAAACGATAGATAGTGAGACAAGTGTAAAT
TGAAATGAATCTTCGATTAAAATTATTCAAGTGATAACATAAAAACTTACCTATATTAACAGAAA
ATTCATAAAACTGAAAATGAGTACTCCAGAAGTTAGAACTTGAGGAATGAGAACTCATAGAGAAC
AGGGTCAGGGAACCCAAATCGACTCATCTGCATCCCAAGTGCAAACCCCTGAGTGAGCAAC
Found at i:26653637 original size:30 final size:30
Alignment explanation
Indices: 26653580--26653641 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
26653570 GCTTTTTGAA
* *
26653580 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
26653610 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
26653640 AA
1 AA
26653642 AAATAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:26662408 original size:18 final size:19
Alignment explanation
Indices: 26662382--26662418 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
26662372 AATTTTGGAA
26662382 TGGAAAGAAGAGA-GAAAG
1 TGGAAAGAAGAGAGGAAAG
*
26662400 TGGAGAGAAGAGAGGAAAG
1 TGGAAAGAAGAGAGGAAAG
26662419 ATGTGAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.43, T:0.05
Consensus pattern (19 bp):
TGGAAAGAAGAGAGGAAAG
Found at i:26668619 original size:4 final size:4
Alignment explanation
Indices: 26668605--26668709 Score: 85
Period size: 4 Copynumber: 26.2 Consensus size: 4
26668595 TAATAGGTAA
* *
26668605 AAAT GAAT AAAT AAAT AAAT AAAT AAAT AAAC AAAT AAA- AGAA- AAGA-
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AA-AT
* **
26668652 AAAT -AAT AACAA AAAT AAA- AGCT AATAGT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AA-AT AAAT AAAT AAAT AA-A-T AAAT AAAT AAAT AAAT AAAT
26668701 AAAT AAAT A
1 AAAT AAAT A
26668710 CTATGTACAA
Statistics
Matches: 83, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
3 7 0.08
4 69 0.83
5 4 0.05
6 3 0.04
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:26668745 original size:3 final size:3
Alignment explanation
Indices: 26668731--26668853 Score: 67
Period size: 3 Copynumber: 40.7 Consensus size: 3
26668721 AGCTGAAAGG
* * * *
26668731 TAA TAA -AA TAA TAA TGA TAA CAA TAA T-A CAA TAA TAA TAAA TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA
* *
26668775 TAA TAA AAA TACA TTAA TAA -ACA -AA TAA TAA TAG TAA -ATA TAA TCAA
1 TAA TAA TAA TA-A -TAA TAA TA-A TAA TAA TAA TAA TAA TA-A TAA T-AA
* * * *
26668822 GAG TAA TAA TAA TCA TAA TAA TAA TGA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26668854 GTAGTGAAAA
Statistics
Matches: 90, Mismatches: 20, Indels: 20
0.69 0.15 0.15
Matches are distributed among these distances:
2 6 0.07
3 74 0.82
4 8 0.09
5 2 0.02
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:26668779 original size:10 final size:10
Alignment explanation
Indices: 26668731--26668845 Score: 56
Period size: 11 Copynumber: 10.6 Consensus size: 10
26668721 AGCTGAAAGG
26668731 TAATAAAATAA
1 TAAT-AAATAA
*
26668742 TAATGATAACAA
1 TAAT-A-AATAA
26668754 TAATACAATAA
1 TAATA-AATAA
*
26668765 TAATAAATTA
1 TAATAAATAA
26668775 TAATAAA-AA
1 TAATAAATAA
*
26668784 TACATTAATAA
1 TA-ATAAATAA
*
26668795 -ACAAATAATAA
1 TA-ATA-AATAA
*
26668806 TAGTAAAT-A
1 TAATAAATAA
26668815 TAATCAAGAGTAA
1 TAAT-AA-A-TAA
26668828 TAATAATCATAA
1 TAATAA--ATAA
26668840 TAATAA
1 TAATAA
26668846 TGATAATAGT
Statistics
Matches: 81, Mismatches: 13, Indels: 19
0.72 0.12 0.17
Matches are distributed among these distances:
9 7 0.09
10 23 0.28
11 24 0.30
12 21 0.26
13 6 0.07
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (10 bp):
TAATAAATAA
Found at i:26668949 original size:15 final size:14
Alignment explanation
Indices: 26668921--26668979 Score: 59
Period size: 15 Copynumber: 4.2 Consensus size: 14
26668911 AAAATAAATT
26668921 TAATGAATAAAATAA
1 TAAT-AATAAAATAA
* *
26668936 TCATAATGAAAATAG
1 TAATAAT-AAAATAA
26668951 TAATAATAAAATAA
1 TAATAATAAAATAA
*
26668965 -AAAAATAAAA-AA
1 TAATAATAAAATAA
26668977 TAA
1 TAA
26668980 ATAGAGTCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
12 2 0.05
13 11 0.30
14 9 0.24
15 15 0.41
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (14 bp):
TAATAATAAAATAA
Found at i:26670660 original size:51 final size:51
Alignment explanation
Indices: 26670560--26670661 Score: 123
Period size: 51 Copynumber: 2.0 Consensus size: 51
26670550 TAAATTGTAT
* * * * *
26670560 CTTTAATTTGTTCCGCTGAAACGTTAGGGAAATAAGATTCGCTGCCTTCAG
1 CTTTAATCTGTTCCACTGAAACGCTAGAGAAATAAGATTCGCTACCTTCAG
* * * *
26670611 CTTTAATCTGTTTCACTGCAACGCTAGAGAAATAAGATTCGTTATCTTCAG
1 CTTTAATCTGTTCCACTGAAACGCTAGAGAAATAAGATTCGCTACCTTCAG
26670662 TCTGCTCCAG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (51 bp):
CTTTAATCTGTTCCACTGAAACGCTAGAGAAATAAGATTCGCTACCTTCAG
Found at i:26670810 original size:194 final size:194
Alignment explanation
Indices: 26670472--26671038 Score: 751
Period size: 194 Copynumber: 2.9 Consensus size: 194
26670462 TTTTAATCCT
** * * * *
26670472 CTCCACTACAACTTCAGGGAGAT-AGGATTGGTGGCTTCAATTTGCTTCACTGCAACTTTAGGAA
1 CTCCACTGTAACTTCAGGGAGATAAGG-CTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAA
** * * * * * *
26670536 GATAAGATTCGTGATAAATTGTATCTTTAATTTGTTCCGCTGAAACGTTAGGGAAATAAGATTCG
65 GATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGGGAAATAAGATTCG
* * *
26670601 CTGCCTTCAGCTTTAATCTGTTTCACTGCAACGCTAGAGAAATAAGATTCGTTATCTTCAGTCTG
130 TTGCCTTCAGCTTTAATCTGTTACACTGCAACGCTAGAGAAATAAGATTCGCTATCTTCAGTCTG
* * *
26670666 CTCCAGTGTAACTTCAAGGAGATAAGGCTGGTAGCTTCAATCTGCTCCACTGCAACTTCAGGAAG
1 CTCCACTGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAG
*
26670731 ATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGGGAAATAAGATTCGT
66 ATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGGGAAATAAGATTCGT
* * * * * * *
26670796 TGTCTTCAGCTTTAATCTGTTCCATTGCAATGCCAGAAAAATAAGATTCGCTGTCTTCAGTCTG
131 TGCCTTCAGCTTTAATCTGTTACACTGCAACGCTAGAGAAATAAGATTCGCTATCTTCAGTCTG
* * *
26670860 CTCCACTGTAACATCAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCATTGCAACTTCAGGAAG
1 CTCCACTGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAG
* * * * *
26670925 ATAAGATTCGCCATAATTCGTAGCGTTGATCTGTTCCACTGCAATGCCAGGGAGAA-AAGATTCG
66 ATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGGGA-AATAAGATTCG
* * *
26670989 TTGCCTTCAGCTTTAATCTATTACACTGCAACGCTAGGGAAATCAGATTC
130 TTGCCTTCAGCTTTAATCTGTTACACTGCAACGCTAGAGAAATAAGATTC
26671039 ACTGCCTTCA
Statistics
Matches: 323, Mismatches: 48, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
194 318 0.98
195 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (194 bp):
CTCCACTGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAG
ATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGGGAAATAAGATTCGT
TGCCTTCAGCTTTAATCTGTTACACTGCAACGCTAGAGAAATAAGATTCGCTATCTTCAGTCTG
Found at i:26670825 original size:51 final size:51
Alignment explanation
Indices: 26670752--26672167 Score: 1054
Period size: 51 Copynumber: 28.8 Consensus size: 51
26670742 CATAATTTGT
* * *
26670752 AGCTTTAATCTGTTCCACTGCAACGCTAGGGAAATAAGATTCGTTGTCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * ** *
26670803 AGCTTTAATCTGTTCCATTGCAATGCCAGAAAAATAAGATTCGCTGTCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * ** *
26670854 AG------TCTGCTCCACTGTAACATCAGGGAGATAAG----GCTAG---T-
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCT-GCCTTC
* * * * ** **
26670892 GGCTTCAATCTGCTCCATTGCAACTTCA-GGAAGATAAGATTCGCCAT-AATTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAA-ATAAGATTCG-C-TGCCTTC
* * * *
26670944 GTAGCGTTGATCTGTTCCACTGCAATGCCAGGGAGAA-AAGATTCGTTGCCTTC
1 --AGCTTTAATCTGTTCCACTGCAACGCCAGGGA-AATAAGATTCGCTGCCTTC
* * * * *
26670997 AGCTTTAATCTATTACACTGCAACGCTAGGGAAATCAGATTCACTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* *
26671048 AGCTTTAATCTGTTCCACTGCAACCCCAGGGAAAAAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
26671099 AGCTTTAATCTGGTCCACTGCAACGCTAGGGAAATAAGATTCACTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* ** *
26671150 AGCTTTAATTTGTTCCACTGCAACGTTAGGGAAATAAGATTCACTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * * * *
26671201 AACCTTAATC---T--ACTGCAACGCCAGGGAAAAAAGATTCACTACCCTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
26671247 AGCTTTAATCTATTCCACTACAACGCCTA-GGAAA-AAGATTCACTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCC-AGGGAAATAAGATTCGCTGCCTTC
* * * *
26671297 AGCTTTAATCTGTTCCACTGCAATGCTAAGGAAATAAGATTTGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * *
26671348 AGCTTTAATC---T--ACTTCAACACCAGGGAAATAAGATTCGTTGCTTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
26671394 AGCTTTAATCTGTTCCACTGTAACGCCAAGCAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * ** *
26671445 ATCTTTAATC---T--ATTGTAACGCCAGGGAAATAAGATTCATTGCTTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
26671491 AGCCTTAATC---T--ACTGCAACGCCAGGGAAA-AGAGATTTGCTGCCCTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATA-AGATTCGCTGCCTTC
* * * * * *
26671537 AACTTTAATCTATTCCACTGCATCGCCTGGGAAA-AAGATCCGCTACCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* ** *
26671587 AGCTTTAATCTGTTCCACTGCAATGCCAATGAAATAAAATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
** * *
26671638 AGCTTTAATC---T--ACTGCAACGCCAGGGAAATAAGATTTACTGCTTTT
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *** * *
26671684 AGCTTTAATCTATTCCATTGCAACGCCAACAAAATAAGATTCACTGCCTTT
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * *
26671735 AGCTTTAATC---T--ACTGCAACGCTAGGGAAATAAGATTCACTACCTTT
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * * * * *
26671781 TG-TTTAATCTATTCCATTACAGCGCCAAGGAAATAAGATTCGCTGCCTTG
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
26671831 AGCTTTAATC---T--ACTAG-AATGCCAGGGAAAAAAGATTCGCTACCTTC
1 AGCTTTAATCTGTTCCACT-GCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * ** * * *
26671877 AACCTTAATCTGTTCCACTGCATTGCCAAGGAAAAAAGATTTGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * * * *
26671928 AGCTTTAATCTATTCCACTACAATGCCAAGGGAAA-AAGATTTGCTGGCTTT
1 AGCTTTAATCTGTTCCACTGCAACGCC-AGGGAAATAAGATTCGCTGCCTTC
* * *
26671979 AGCTTCAATC---T--ACTTCAATGCCAGGGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * * * * * *
26672025 AACTTTAGTTTATTCCATTGCAATGCTAAGGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* ** * *
26672076 AACTTTAATCTGTTCCACTGCAATACCAGAGAAATAAGATTCGCTGCCCTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
26672127 AGCTTTAATCTGTTCCACTACAATGCCCA-GGAAAAAAGATT
1 AGCTTTAATCTGTTCCACTGCAACG-CCAGGGAAATAAGATT
26672168 TGCCATAATG
Statistics
Matches: 1092, Mismatches: 203, Indels: 140
0.76 0.14 0.10
Matches are distributed among these distances:
38 1 0.00
39 1 0.00
41 3 0.00
42 1 0.00
43 3 0.00
44 22 0.02
45 36 0.03
46 277 0.25
48 9 0.01
49 8 0.01
50 112 0.10
51 573 0.52
52 11 0.01
53 3 0.00
54 27 0.02
55 4 0.00
56 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (51 bp):
AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
Found at i:26671264 original size:97 final size:99
Alignment explanation
Indices: 26670953--26672167 Score: 852
Period size: 97 Copynumber: 12.3 Consensus size: 99
26670943 CGTAGCGTTG
* * **
26670953 ATCTGTTCCACTGCAATGCCAGGGAGAA-AAGATTCGTTGCCTTCAGCTTTAATCTATTACACTG
1 ATCTATTCCACTGCAACGCCAGGGA-AATAAGATTCACTGCCTTCAGCTTTAATC--TT-CACTG
* *
26671017 CAACGCTAGGGAAATCAGATTCACTGCCTTCAGCTTTA
62 CAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * * *
26671055 ATCTGTTCCACTGCAACCCCAGGGAAAAAAGATTCGCTGCCTTCAGCTTTAATCTGGTCCACTGC
1 ATCTATTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCT--T-CACTGC
*
26671120 AACGCTAGGGAAATAAGATTCACTGCCTTCAGCTTTA
63 AACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * ** * *
26671157 ATTTGTTCCACTGCAACGTTAGGGAAATAAGATTCACTGCCTTCAACCTTAATC-T-ACTGCAAC
1 ATCTATTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCTTCACTGCAAC
* * *
26671220 GCCAGGGAAAAAAGATTCACTACCCTCAGCTTTA
66 GCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
*
26671254 ATCTATTCCACTACAACGCCTA-GGAAA-AAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTG
1 ATCTATTCCACTGCAACGCC-AGGGAAATAAGATTCACTGCCTTCAGCTTTAATC--TT-CACTG
* * * **
26671317 CAATGCTAAGGAAATAAGATTTGCTGCCTTCAGCTTTA
62 CAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * ** * *
26671355 ATC---T--ACTTCAACACCAGGGAAATAAGATTCGTTGCTTTCAGCTTTAATCTGTTCCACTGT
1 ATCTATTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATC--TT-CACTGC
* * * *
26671415 AACGCCAAGCAAATAAGATTCGCTGCCTTCATCTTTA
63 AACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * * *
26671452 ATCTA-T----TGTAACGCCAGGGAAATAAGATTCATTGCTTTCAGCCTTAATC-T-ACTGCAAC
1 ATCTATTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCTTCACTGCAAC
** * *
26671510 GCCAGGGAAA-AGAGATTTGCTGCCCTCAACTTTA
66 GCCAGGGAAATA-AGATTCACTGCCTTCAGCTTTA
* * * * *
26671544 ATCTATTCCACTGCATCGCCTGGGAAA-AAGATCCGCTACCTTCAGCTTTAATCTGTTCCACTGC
1 ATCTATTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATC--TT-CACTGC
* ** * *
26671608 AATGCCAATGAAATAAAATTCGCTGCCTTCAGCTTTA
63 AACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * * *
26671645 ATC---T--ACTGCAACGCCAGGGAAATAAGATTTACTGCTTTTAGCTTTAATCTATTCCATTGC
1 ATCTATTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATC--TT-CACTGC
*** *
26671705 AACGCCAACAAAATAAGATTCACTGCCTTTAGCTTTA
63 AACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * ** * *
26671742 ATC---T--ACTGCAACGCTAGGGAAATAAGATTCACTACCTTTTG-TTTAATCTATTCCATTAC
1 ATCTATTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATC--TT-CACTGC
* * * *
26671801 AGCGCCAAGGAAATAAGATTCGCTGCCTTGAGCTTTA
63 AACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * * * * * *
26671838 ATCTA--CTA--G-AATGCCAGGGAAAAAAGATTCGCTACCTTCAACCTTAATCTGTTCCACTGC
1 ATCTATTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATC--TT-CACTGC
** * * **
26671898 ATTGCCAAGGAAAAAAGATTTGCTGCCTTCAGCTTTA
63 AACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * ** * * * *
26671935 ATCTATTCCACTACAATGCCAAGGGAAA-AAGATTTGCTGGCTTTAGCTTCAATC-T-ACTTCAA
1 ATCTATTCCACTGCAACGCC-AGGGAAATAAGATTCACTGCCTTCAGCTTTAATCTTCACTGCAA
* * *
26671997 TGCCAGGGAAATAAGATTCGCTGCCTTCAACTTTA
65 CGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * * * * * * *
26672032 GTTTATTCCATTGCAATGCTAAGGAAATAAGATTCGCTGCCTTCAACTTTAATCTGTTCCACTGC
1 ATCTATTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATC--TT-CACTGC
** * * *
26672097 AATACCAGAGAAATAAGATTCGCTGCCCTCAGCTTTA
63 AACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
* * * *
26672134 ATCTGTTCCACTACAATGCCCA-GGAAAAAAGATT
1 ATCTATTCCACTGCAACG-CCAGGGAAATAAGATT
26672168 TGCCATAATG
Statistics
Matches: 918, Mismatches: 151, Indels: 88
0.79 0.13 0.08
Matches are distributed among these distances:
91 1 0.00
92 39 0.04
93 1 0.00
94 1 0.00
95 1 0.00
96 157 0.17
97 397 0.43
98 3 0.00
99 8 0.01
100 2 0.00
101 75 0.08
102 224 0.24
103 9 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (99 bp):
ATCTATTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCTTCACTGCAAC
GCCAGGGAAATAAGATTCACTGCCTTCAGCTTTA
Found at i:26671572 original size:290 final size:288
Alignment explanation
Indices: 26670953--26672167 Score: 1083
Period size: 290 Copynumber: 4.1 Consensus size: 288
26670943 CGTAGCGTTG
* * * * *
26670953 ATCTGTTCCACTGCAATGCCAGGGAGAAAAGATTCGTTGCCTTCAGCTTTAATCTATTACACTGC
1 ATCTATTCCACTGC-ATGCCAGGGA-AAAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGC
* * * * * * *
26671018 AACGCTAGGGAAATCAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACCCCAGGGAAAA
64 AATGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCAACACCAGGGAAAT
* * * * *
26671083 AAGATTCGCTGCCTTCAGCTTTAATCTGGTCCACTGCAACGCTAGGGAAATAAGATTCACTGCCT
124 AAGATTCGCTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGCAAATAAGATTCACTGCCT
* * * * *
26671148 TCAGCTTTAATTTGTTCCACTGCAACGTTAGGGAAATAAGATTCACTGCCTTCAACCTTAATCTA
189 TCAGCTTTAA-----TCTACTGCAACGCTAGGGAAATAAGATTCATTGCTTTCAGCCTTAATCTA
* *
26671213 CTGCAACGCCAGGGAAAAAAGATTCACTACCCTCAGCTTTA
249 CTGCAACGCCAGGG-AAAAAGATTCGCTGCCCTCAGCTTTA
* * * *
26671254 ATCTATTCCACTACAACGCCTA-GGAAAAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGC
1 ATCTATTCCACTGC-ATGCC-AGGGAAAAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGC
* * *
26671318 AATGCTAAGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTACTTCAACACCAGGGAAATAAGAT
64 AATGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACACCAGGGAAATAAGAT
* * * *
26671383 TCGTTGCTTTCAGCTTTAATCTGTTCCACTGTAACGCCAAGCAAATAAGATTCGCTGCCTTCATC
129 TCGCTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGCAAATAAGATTCACTGCCTTCAGC
* * *
26671448 TTTAATCTATTGTAACGCCAGGGAAATAAGATTCATTGCTTTCAGCCTTAATCTACTGCAACGCC
194 TTTAATCTACTGCAACGCTAGGGAAATAAGATTCATTGCTTTCAGCCTTAATCTACTGCAACGCC
* *
26671513 AGGGAAAAGAGATTTGCTGCCCTCAACTTTA
259 AGGGAAAA-AGATTCGCTGCCCTCAGCTTTA
* *
26671544 ATCTATTCCACTGCATCGCCTGGGAAAAAGATCCGCTACCTTCAGCTTTAATCTGTTCCACTGCA
1 ATCTATTCCACTGCAT-GCCAGGGAAAAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCA
* * *
26671609 ATGCCAATGAAATAAAATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAGGGAAATAAGATT
65 ATGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACACCAGGGAAATAAGATT
** * * * *
26671674 TACTGCTTTTAGCTTTAATCTATTCCATTGCAACGCCAA-CAAAATAAGATTCACTGCCTTTAGC
130 CGCTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGC-AAATAAGATTCACTGCCTTCAGC
** * * *
26671738 TTTAATCTACTGCAACGCTAGGGAAATAAGATTCACTACCTTT-TG-TTTAATCTATTCCATTAC
194 TTTAATCTACTGCAACGCTAGGGAAATAAGATTCA-TTGCTTTCAGCCTTAATCTA---C--TGC
* * * *
26671801 AGCGCCAAGGAAATAAGATTCGCTGCCTTGAGCTTTA
253 AACGCCAGGGAAA-AAGATTCGCTGCCCTCAGCTTTA
* * * *
26671838 ATCTA--CTA--GAATGCCAGGGAAAAAAGATTCGCTACCTTCAACCTTAATCTGTTCCACTGCA
1 ATCTATTCCACTGCATGCCAGGG-AAAAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCA
* * * * *
26671899 TTGCCAAGGAAAAAAGATTTGCTGCCTTCAGCTTTAATCTATTCCACTACAATGCCAAGGGAAA-
65 ATGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCA--AC-A--CC-AGGGAAAT
* * * * * * *
26671963 AAGATTTGCTGGCTTT-AGCTTCAATC---T--ACTTCAATGCCAGGGAAATAAGATTCGCTGCC
124 AAGATTCGCT-GCTTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGCAAATAAGATTCACTGCC
* * * * * ** * * *
26672022 TTCAACTTTAGTTTATTCCATTGCAATGCTAAGGAAATAAGATTCGCTGCCTTCAACTTTAATCT
188 TTCAGCTTTA----A-TCTACTGCAACGCTAGGGAAATAAGATTCATTGCTTTCAGCCTTAATC-
** *
26672087 GTTCCACTGCAATACCAGAGAAATAAGATTCGCTGCCCTCAGCTTTA
247 --T--ACTGCAACGCCAGGGAAA-AAGATTCGCTGCCCTCAGCTTTA
* * *
26672134 ATCTGTTCCACTACAATGCCCAGGAAAAAAGATT
1 ATCTATTCCACTGC-ATG-CCAGGGAAAAAGATT
26672168 TGCCATAATG
Statistics
Matches: 755, Mismatches: 120, Indels: 78
0.79 0.13 0.08
Matches are distributed among these distances:
289 20 0.03
290 387 0.51
291 5 0.01
292 6 0.01
294 40 0.05
295 128 0.17
296 55 0.07
297 1 0.00
298 3 0.00
299 1 0.00
300 70 0.09
301 33 0.04
302 6 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (288 bp):
ATCTATTCCACTGCATGCCAGGGAAAAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAA
TGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACACCAGGGAAATAAGATTC
GCTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGCAAATAAGATTCACTGCCTTCAGCTT
TAATCTACTGCAACGCTAGGGAAATAAGATTCATTGCTTTCAGCCTTAATCTACTGCAACGCCAG
GGAAAAAGATTCGCTGCCCTCAGCTTTA
Found at i:26671983 original size:148 final size:149
Alignment explanation
Indices: 26670966--26672137 Score: 528
Period size: 148 Copynumber: 8.0 Consensus size: 149
26670956 TGTTCCACTG
* * * * * * * * *
26670966 CAATGCCAGGGAGAAAAGATTCGTTGCCTTCAGCTTTAATCTATTACACTGCAACGCTAGGGAAA
1 CAATGCCAGGGAAAAAAGATTCGCTACCTTCAACCTTAATCTATTCCACTGCAATGCCAAGGAAA
** * * * * * * *
26671031 TCAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAA-CCCCAGGGAAAAAAGATTCGCTGC
66 AAAGATTCGCTGCCTTCAACTTTAATCTATTCCACTACAATGCCAAGGGAAATAAGATTCGCTGC
*
26671095 CTTCAGCTTTAATCTGGTCCACTG
131 CTTCAGCTTTAATC---T--ACTA
* * * * * * * * * * ** *
26671119 CAACGCTAGGGAAATAAGATTCACTGCCTTCAGCTTTAATTTGTTCCACTGCAACGTTAGGGAAA
1 CAATGCCAGGGAAAAAAGATTCGCTACCTTCAACCTTAATCTATTCCACTGCAATGCCAAGGAAA
* * * * * * * *
26671184 TAAGATTCACTGCCTTCAACCTTAATC---T--ACTGCAACGCC-AGGGAAAAAAGATTCACTAC
66 AAAGATTCGCTGCCTTCAACTTTAATCTATTCCACTACAATGCCAAGGGAAATAAGATTCGCTGC
*
26671243 CCTCAGCTTTAATCTATTCCACTA
131 CTTCAGCTTTAATC---T--ACTA
* * * * * * *
26671267 CAACGCCTA-GG-AAAAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCTAAGGAA
1 CAATGCC-AGGGAAAAAAGATTCGCTACCTTCAACCTTAATCTATTCCACTGCAATGCCAAGGAA
* * * *
26671330 ATAAGATTTGCTGCCTTCAGCTTTAATCTACTT-CA--AC-A--CC-AGGGAAATAAGATTCGTT
65 AAAAGATTCGCTGCCTTCAACTTTAATCTA-TTCCACTACAATGCCAAGGGAAATAAGATTCGCT
* *
26671388 GCTTTCAGCTTTAATCTGTTCCACTG
129 GCCTTCAGCTTTAATC---T--ACTA
* * * * * * * * * * *
26671414 TAACGCCAAGCAAATAAGATTCGCTGCCTTCATCTTTAATCTA-T----TGTAACGCCAGGGAAA
1 CAATGCCAGGGAAAAAAGATTCGCTACCTTCAACCTTAATCTATTCCACTGCAATGCCAAGGAAA
* ** * * * * * *
26671474 TAAGATTCATTGCTTTCAGCCTTAATC---T--ACTGCAACGCC-AGGGAAA-AGAGATTTGCTG
66 AAAGATTCGCTGCCTTCAACTTTAATCTATTCCACTACAATGCCAAGGGAAATA-AGATTCGCTG
* * *
26671532 CCCTCAACTTTAATCTATTCCA
130 CCTTCAGCTTTAATCTA--CTA
* * * * * * *
26671554 CTGCATCGCCTGGG-AAAAAGATCCGCTACCTTCAGCTTTAATCTGTTCCACTGCAATGCCAATG
1 C--AAT-GCCAGGGAAAAAAGATTCGCTACCTTCAACCTTAATCTATTCCACTGCAATGCCAAGG
* * * **
26671618 AAATAAA-ATTCGCTGCCTTCAGCTTTAATC---T--ACTGCAACGCC-AGGGAAATAAGATTTA
63 AAA-AAAGATTCGCTGCCTTCAACTTTAATCTATTCCACTACAATGCCAAGGGAAATAAGATTCG
* * *
26671676 CTGCTTTTAGCTTTAATCTATTCCATTG
127 CTGCCTTCAGCTTTAATCTA---C--TA
* ** * * * * * * * *
26671704 CAACGCCA-ACAAAATAAGATTCACTGCCTTTAGCTTTAATC---T--ACTGCAACGCTAGGGAA
1 CAATGCCAGGGAAAA-AAGATTCGCTACCTTCAACCTTAATCTATTCCACTGCAATGCCAAGGAA
* * * *** * **
26671763 ATAAGATTCACTACCTT-TTGTTTAATCTATTCCATTACAGCGCCAA-GGAAATAAGATTCGCTG
65 AAAAGATTCGCTGCCTTCAACTTTAATCTATTCCACTACAATGCCAAGGGAAATAAGATTCGCTG
*
26671826 CCTTGAGCTTTAATCTACTA
130 CCTTCAGCTTTAATCTACTA
* * *
26671846 GAATGCCAGGGAAAAAAGATTCGCTACCTTCAACCTTAATCTGTTCCACTGCATTGCCAAGGAAA
1 CAATGCCAGGGAAAAAAGATTCGCTACCTTCAACCTTAATCTATTCCACTGCAATGCCAAGGAAA
* * * *
26671911 AAAGATTTGCTGCCTTCAGCTTTAATCTATTCCACTACAATGCCAAGGGAAA-AAGATTTGCTGG
66 AAAGATTCGCTGCCTTCAACTTTAATCTATTCCACTACAATGCCAAGGGAAATAAGATTCGCTGC
* * *
26671975 CTTTAGCTTCAATCTACTT
131 CTTCAGCTTTAATCTACTA
* * * * * * *
26671994 CAATGCCAGGGAAATAAGATTCGCTGCCTTCAACTTTAGTTTATTCCATTGCAATGCTAAGGAAA
1 CAATGCCAGGGAAAAAAGATTCGCTACCTTCAACCTTAATCTATTCCACTGCAATGCCAAGGAAA
* * * * *
26672059 TAAGATTCGCTGCCTTCAACTTTAATCTGTTCCACTGCAATACC-AGAGAAATAAGATTCGCTGC
66 AAAGATTCGCTGCCTTCAACTTTAATCTATTCCACTACAATGCCAAGGGAAATAAGATTCGCTGC
*
26672123 CCTCAGCTTTAATCT
131 CTTCAGCTTTAATCT
26672138 GTTCCACTAC
Statistics
Matches: 804, Mismatches: 167, Indels: 101
0.75 0.16 0.09
Matches are distributed among these distances:
138 2 0.00
139 1 0.00
140 3 0.00
141 1 0.00
142 65 0.08
143 96 0.12
144 1 0.00
145 3 0.00
146 1 0.00
147 265 0.33
148 273 0.34
149 9 0.01
150 3 0.00
151 1 0.00
152 1 0.00
153 79 0.10
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (149 bp):
CAATGCCAGGGAAAAAAGATTCGCTACCTTCAACCTTAATCTATTCCACTGCAATGCCAAGGAAA
AAAGATTCGCTGCCTTCAACTTTAATCTATTCCACTACAATGCCAAGGGAAATAAGATTCGCTGC
CTTCAGCTTTAATCTACTA
Found at i:26672530 original size:24 final size:24
Alignment explanation
Indices: 26672498--26672574 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
26672488 CAGATTACCC
26672498 CCACTATAATCTTCAAGGTTCAAT
1 CCACTATAATCTTCAAGGTTCAAT
*
26672522 CCACTATAATCTTCAAGGTTTAAT
1 CCACTATAATCTTCAAGGTTCAAT
* *
26672546 CCACTATAATCTTTAAGGTTCAAG
1 CCACTATAATCTTCAAGGTTCAAT
26672570 CCACT
1 CCACT
26672575 GTACTTTTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.32, C:0.25, G:0.09, T:0.34
Consensus pattern (24 bp):
CCACTATAATCTTCAAGGTTCAAT
Found at i:26673549 original size:46 final size:46
Alignment explanation
Indices: 26673431--26673606 Score: 158
Period size: 46 Copynumber: 3.7 Consensus size: 46
26673421 CCCCTTTGGT
* * *
26673431 CTCAAGGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCTTTTTTTTGAA
1 CTCAAGACGCCCTTTGCGGGTTTTCACCTTGG--TCT--TTTTTTTAGGA
* * * *
26673481 TTCAA-AGTGCCATTTGCGGGTTTTCACTTTGGTCTTTTTTTTAGGA
1 CTCAAGA-CGCCCTTTGCGGGTTTTCACCTTGGTCTTTTTTTTAGGA
* * * *
26673527 CTCAAGACGCCCTTTGGGGGTTTTTACCTTGGTCTCTTTTTTAAGA
1 CTCAAGACGCCCTTTGCGGGTTTTCACCTTGGTCTTTTTTTTAGGA
* **
26673573 CTCAA-AGCTCCCTTTGCAAGTTTTCACCTTGGTC
1 CTCAAGA-CGCCCTTTGCGGGTTTTCACCTTGGTC
26673607 CTTTCTTCTT
Statistics
Matches: 103, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 72 0.70
47 1 0.01
48 3 0.03
50 26 0.25
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.41
Consensus pattern (46 bp):
CTCAAGACGCCCTTTGCGGGTTTTCACCTTGGTCTTTTTTTTAGGA
Found at i:26674053 original size:16 final size:14
Alignment explanation
Indices: 26674032--26674123 Score: 78
Period size: 15 Copynumber: 6.1 Consensus size: 14
26674022 CTCAGTAGAA
26674032 GTTTTTGTTTCTTTTT
1 GTTTTT-TTT-TTTTT
*
26674048 G-TTTTTTGTTTTT
1 GTTTTTTTTTTTTT
*
26674061 GTTTTGTGTTTTTTGT
1 GTTTT-T-TTTTTTTT
*
26674077 GTTTTTTGTTTTTT
1 GTTTTTTTTTTTTT
*
26674091 GTCTTTTTGTCTTTTT
1 GT-TTTTT-TTTTTTT
26674107 GTTTTTTATTTTTTT
1 GTTTTTT-TTTTTTT
26674122 GT
1 GT
26674124 CCTCTATTGC
Statistics
Matches: 62, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
13 6 0.10
14 13 0.21
15 24 0.39
16 19 0.31
ACGTcount: A:0.01, C:0.03, G:0.15, T:0.80
Consensus pattern (14 bp):
GTTTTTTTTTTTTT
Found at i:26674055 original size:7 final size:7
Alignment explanation
Indices: 26674043--26674120 Score: 95
Period size: 7 Copynumber: 10.7 Consensus size: 7
26674033 TTTTTGTTTC
26674043 TTTTTGT
1 TTTTTGT
26674050 TTTTTG-
1 TTTTTGT
26674056 TTTTTGT
1 TTTTTGT
*
26674063 TTTGTGTT
1 TTTTTG-T
26674071 TTTTGTGT
1 TTTT-TGT
26674079 TTTTTGT
1 TTTTTGT
26674086 TTTTTGT
1 TTTTTGT
26674093 CTTTTTGT
1 -TTTTTGT
26674101 CTTTTTGT
1 -TTTTTGT
*
26674109 TTTTTAT
1 TTTTTGT
26674116 TTTTT
1 TTTTT
26674121 TGTCCTCTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
6 6 0.09
7 32 0.50
8 24 0.38
9 2 0.03
ACGTcount: A:0.01, C:0.03, G:0.14, T:0.82
Consensus pattern (7 bp):
TTTTTGT
Found at i:26674097 original size:9 final size:9
Alignment explanation
Indices: 26674062--26674106 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
26674052 TTTGTTTTTG
*
26674062 TTTTGTGTT
1 TTTTGTCTT
*
26674071 TTTTGTGTT
1 TTTTGTCTT
26674080 TTTTG--TT
1 TTTTGTCTT
26674087 TTTTGTC-T
1 TTTTGTCTT
26674095 TTTTGTCTT
1 TTTTGTCTT
26674104 TTT
1 TTT
26674107 GTTTTTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.21
8 8 0.24
9 18 0.55
ACGTcount: A:0.00, C:0.04, G:0.16, T:0.80
Consensus pattern (9 bp):
TTTTGTCTT
Found at i:26674124 original size:23 final size:23
Alignment explanation
Indices: 26674033--26674124 Score: 100
Period size: 23 Copynumber: 4.0 Consensus size: 23
26674023 TCAGTAGAAG
*
26674033 TTTTTGTTTCTTT-TTGTTTTT-TG
1 TTTTTGTTT-TTTGTT-TTTTTGTC
*
26674056 TTTTTGTTTTGTGTTTTTTGTGT-
1 TTTTTGTTTTTTGTTTTTT-TGTC
*
26674079 TTTTTGTTTTTTGTCTTTTTGTC
1 TTTTTGTTTTTTGTTTTTTTGTC
*
26674102 TTTTTGTTTTTTATTTTTTTGTC
1 TTTTTGTTTTTTGTTTTTTTGTC
26674125 CTCTATTGCC
Statistics
Matches: 60, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
22 9 0.15
23 50 0.83
24 1 0.02
ACGTcount: A:0.01, C:0.04, G:0.14, T:0.80
Consensus pattern (23 bp):
TTTTTGTTTTTTGTTTTTTTGTC
Found at i:26679570 original size:14 final size:12
Alignment explanation
Indices: 26679492--26679571 Score: 56
Period size: 12 Copynumber: 6.4 Consensus size: 12
26679482 AGCTTAACGG
26679492 TAAT-AAAATAA
1 TAATAAAAATAA
* * *
26679503 TAATTATAACAA
1 TAATAAAAATAA
*
26679515 TAAT-ACAATAA
1 TAATAAAAATAA
*
26679526 TAATAAGAAATTA
1 TAATAA-AAATAA
26679539 TAATAAAAATACA
1 TAATAAAAATA-A
26679552 TTAATAAACGAATAA
1 -TAATAAA--AATAA
26679567 TAATA
1 TAATA
26679572 GTAAAAATAA
Statistics
Matches: 55, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
11 13 0.24
12 14 0.25
13 11 0.20
14 12 0.22
15 1 0.02
16 4 0.07
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.29
Consensus pattern (12 bp):
TAATAAAAATAA
Found at i:26685425 original size:30 final size:32
Alignment explanation
Indices: 26685384--26685443 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
26685374 TCTTCCCACG
26685384 TTTCTTTTTCAAGCTCTC-TCTTTTTCACTTT
1 TTTCTTTTTCAAGCTCTCTTCTTTTTCACTTT
*
26685415 TTTC-TTTTCAAGCTCTCTTTTTTTTCACT
1 TTTCTTTTTCAAGCTCTCTTCTTTTTCACT
26685444 CGTTTCATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.10, C:0.25, G:0.03, T:0.62
Consensus pattern (32 bp):
TTTCTTTTTCAAGCTCTCTTCTTTTTCACTTT
Found at i:26686854 original size:28 final size:28
Alignment explanation
Indices: 26686815--26686876 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
26686805 CAGTAACAGA
*
26686815 ACAG-AACAAGGTGGGCTTTAGCCCAAT
1 ACAGAAACAAGGTGGGCCTTAGCCCAAT
26686842 ACAGAAACAAGGTGGGCCTTAGCCCAAT
1 ACAGAAACAAGGTGGGCCTTAGCCCAAT
26686870 ACAGAAA
1 ACAGAAA
26686877 TAGTATGCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 4 0.12
28 29 0.88
ACGTcount: A:0.39, C:0.23, G:0.24, T:0.15
Consensus pattern (28 bp):
ACAGAAACAAGGTGGGCCTTAGCCCAAT
Found at i:26687074 original size:27 final size:27
Alignment explanation
Indices: 26687037--26687101 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
26687027 AGTAGAGCTG
26687037 CCAGT-ACAGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
*
26687063 CCAGTAACAGTATATGTGGCAGAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
*
26687090 CCCGTAACAGTA
1 CCAGTAACAGTA
26687102 CTTCTTCCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 5 0.14
27 31 0.86
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCAAAGCCA
Found at i:26687397 original size:27 final size:27
Alignment explanation
Indices: 26687340--26687429 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
26687330 TTACCATACA
* * * **
26687340 GGGGTATTTCAATAATTTCAAAAACCA
1 GGGGTATTTCGACAATTTCACAAACTG
*
26687367 GGGGTATTTCGACAATTTCACAAATTG
1 GGGGTATTTCGACAATTTCACAAACTG
* *
26687394 GGGGTGTTTCGACAATTTTACAAACTG
1 GGGGTATTTCGACAATTTCACAAACTG
26687421 GGGGTATTT
1 GGGGTATTT
26687430 TAGTAATTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.33
Consensus pattern (27 bp):
GGGGTATTTCGACAATTTCACAAACTG
Found at i:26687437 original size:27 final size:27
Alignment explanation
Indices: 26687407--26687506 Score: 89
Period size: 27 Copynumber: 3.7 Consensus size: 27
26687397 GTGTTTCGAC
*
26687407 AATTTTACAAACTGGGGGTATTTTAGT
1 AATTTTACAAACTGAGGGTATTTTAGT
* * *
26687434 AATTTTACACA-TCAAGGGTGTTTTAGT
1 AATTTTACAAACT-GAGGGTATTTTAGT
* *
26687461 AATTTTGCAAACCGAGGGTA-TTTAGGT
1 AATTTTACAAACTGAGGGTATTTTA-GT
*
26687488 AATTTCACAAA-TAGAGGGT
1 AATTTTACAAACT-GAGGGT
26687507 CTCAGTGACC
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
26 5 0.09
27 52 0.91
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.36
Consensus pattern (27 bp):
AATTTTACAAACTGAGGGTATTTTAGT
Found at i:26687506 original size:54 final size:54
Alignment explanation
Indices: 26687380--26687506 Score: 125
Period size: 54 Copynumber: 2.4 Consensus size: 54
26687370 GTATTTCGAC
* * * * *
26687380 AATTTCACAAATTGGGGGTGTTTCGACAATTTTACAAACTGGGGGTATTTTAGT
1 AATTTCACAAATAGAGGGTGTTTAGACAATTTTACAAACCGAGGGTATTTTAGT
* * * *
26687434 AATTTTACACATCA-AGGGTGTTTTAG-TAATTTTGCAAACCGAGGGTA-TTTAGGT
1 AATTTCACAAAT-AGAGGGTG-TTTAGACAATTTTACAAACCGAGGGTATTTTA-GT
26687488 AATTTCACAAATAGAGGGT
1 AATTTCACAAATAGAGGGT
26687507 CTCAGTGACC
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
53 5 0.09
54 49 0.84
55 4 0.07
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (54 bp):
AATTTCACAAATAGAGGGTGTTTAGACAATTTTACAAACCGAGGGTATTTTAGT
Found at i:26692709 original size:25 final size:26
Alignment explanation
Indices: 26692675--26692744 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 26
26692665 TCCTATACAT
*
26692675 GTATGCTCACACGAACTGTGAA-TCG
1 GTATGCTCACACGAGCTGTGAATTCG
*
26692700 GTATGCTCACACGAGCT-TTAATTCG
1 GTATGCTCACACGAGCTGTGAATTCG
*
26692725 GTATGCTCACATGAGCTGTG
1 GTATGCTCACACGAGCTGTG
26692745 GGTCGGAACG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 3 0.08
25 35 0.90
26 1 0.03
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (26 bp):
GTATGCTCACACGAGCTGTGAATTCG
Found at i:26702387 original size:43 final size:41
Alignment explanation
Indices: 26702299--26702528 Score: 250
Period size: 43 Copynumber: 5.5 Consensus size: 41
26702289 CTTGGTGGAT
**
26702299 TCAGCACTTAGCAACCACC-TTA-AATTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACC-CCTTTACAA-TCAAAGATACGGGGAA
*
26702340 TCAGCACATAGCAACCCCTTTCACAATCAAAGATACGGTGGAA
1 TCAGCACTTAGCAACCCCTTT-ACAATCAAAGATACGG-GGAA
* * **
26702383 TCAGCACTTACCAACCACCTTTACATTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACC-CCTTTACAATCAAAGATACGGGGAA
* *
26702425 TCAGCACATAGCAACCCCTTTCACAATCAAATATACGGTGGAA
1 TCAGCACTTAGCAACCCCTTT-ACAATCAAAGATACGG-GGAA
* * *
26702468 TCAGCACTTAGCAACCACCTTTAGAATCAATA-ATTCGAGGAA
1 TCAGCACTTAGCAACC-CCTTTACAATCAA-AGATACGGGGAA
26702510 TCAGCACTTAGCAACCCCT
1 TCAGCACTTAGCAACCCCT
26702529 CAGAGAATCT
Statistics
Matches: 162, Mismatches: 18, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
40 2 0.01
41 25 0.15
42 61 0.38
43 63 0.39
44 11 0.07
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.22
Consensus pattern (41 bp):
TCAGCACTTAGCAACCCCTTTACAATCAAAGATACGGGGAA
Found at i:26702434 original size:85 final size:85
Alignment explanation
Indices: 26702292--26702528 Score: 370
Period size: 85 Copynumber: 2.8 Consensus size: 85
26702282 TCCGTTACTT
*
26702292 GGTGGATTCAGCACTTAGCAACCACC-TTAAATTCAGTGATACGGGGAATCAGCACATAGCAACC
1 GGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAGCACATAGCAACC
26702356 CCTTTCACAATCAAAGATAC
66 CCTTTCACAATCAAAGATAC
* *
26702376 GGTGGAATCAGCACTTACCAACCACCTTTACATTCAGTGATACGGGGAATCAGCACATAGCAACC
1 GGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAGCACATAGCAACC
*
26702441 CCTTTCACAATCAAATATAC
66 CCTTTCACAATCAAAGATAC
* * * * *
26702461 GGTGGAATCAGCACTTAGCAACCACCTTTAGAA-TCAATAATTCGAGGAATCAGCACTTAGCAAC
1 GGTGGAATCAGCACTTAGCAACCACCTTTA-AATTCAGTGATACGGGGAATCAGCACATAGCAAC
26702525 CCCT
65 CCCT
26702529 CAGAGAATCT
Statistics
Matches: 140, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
84 24 0.17
85 115 0.82
86 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (85 bp):
GGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAGCACATAGCAACC
CCTTTCACAATCAAAGATAC
Found at i:26702440 original size:42 final size:42
Alignment explanation
Indices: 26702299--26702525 Score: 266
Period size: 42 Copynumber: 5.4 Consensus size: 42
26702289 CTTGGTGGAT
*
26702299 TCAGCACTTAGCAACCACC-TTA-AATTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACCACCTTTACAA-TCAATGATACGGGGAA
* *
26702340 TCAGCACATAGCAACC-CCTTTCACAATCAAAGATACGGTGGAA
1 TCAGCACTTAGCAACCACCTTT-ACAATCAATGATACGG-GGAA
* * *
26702383 TCAGCACTTACCAACCACCTTTACATTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACCACCTTTACAATCAATGATACGGGGAA
*
26702425 TCAGCACATAGCAACC-CCTTTCACAATCAAAT-ATACGGTGGAA
1 TCAGCACTTAGCAACCACCTTT-ACAATC-AATGATACGG-GGAA
* * * *
26702468 TCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGAGGAA
1 TCAGCACTTAGCAACCACCTTTACAATCAATGATACGGGGAA
26702510 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
26702526 CCTCAGAGAA
Statistics
Matches: 160, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
40 2 0.01
41 22 0.14
42 63 0.39
43 63 0.39
44 10 0.06
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (42 bp):
TCAGCACTTAGCAACCACCTTTACAATCAATGATACGGGGAA
Found at i:26707248 original size:26 final size:26
Alignment explanation
Indices: 26707219--26707285 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
26707209 ACCAATACCG
26707219 CAGCAAAGCTGCCAGTAGT-AGCATCA
1 CAGCAAAGCTGCCAGTA-TCAGCATCA
* * *
26707245 CAGCAGAGCTGCCAGTATCAGTATCG
1 CAGCAAAGCTGCCAGTATCAGCATCA
26707271 CAGCAAAGCTGCCAG
1 CAGCAAAGCTGCCAG
26707286 AACAGTATAC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
25 1 0.03
26 35 0.97
ACGTcount: A:0.31, C:0.28, G:0.25, T:0.15
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTATCAGCATCA
Found at i:26707513 original size:27 final size:26
Alignment explanation
Indices: 26707457--26707892 Score: 373
Period size: 27 Copynumber: 16.2 Consensus size: 26
26707447 GGTATAATAG
**
26707457 TCATTTTACCCTACGGGGTATTTC-A
1 TCATTTTACCCTTTGGGGTATTTCGA
26707482 GTCATTTTACCCTTTGGGAGTATTTCGA
1 -TCATTTTACCCTTTGGG-GTATTTCGA
*
26707510 TCATTTTA-CCTTTCGGGGGTATTT-TA
1 TCATTTTACCCTTT--GGGGTATTTCGA
*
26707536 GTCATTTTACCCTTTAGGGGTATTTCGG
1 -TCATTTTACCCTTT-GGGGTATTTCGA
* * ** *
26707564 TTATTTTGCCCTGAAGGGGTATTTAG-
1 TCATTTTACCCT-TTGGGGTATTTCGA
* *
26707590 TCATTTTACCATTCGGGGGTATTTCGA
1 TCATTTTACCCTT-TGGGGTATTTCGA
26707617 TCATTTTACCCTTTGGGGGTATTTCGA
1 TCATTTTACCCTTT-GGGGTATTTCGA
* **
26707644 TCATTTTACTCTTCAAGGGTATTTCGA
1 TCATTTTACCCTT-TGGGGTATTTCGA
*
26707671 TCATTTTACCCTTTGGGCGTATTT-TA
1 TCATTTTACCCTTTGGG-GTATTTCGA
26707697 GTCATTTTA-CCTTTAGGGGGTATTTCGA
1 -TCATTTTACCCTTT--GGGGTATTTCGA
**
26707725 TCATTTTACCCTTCAAGGGTATTTCGA
1 TCATTTTACCCTT-TGGGGTATTTCGA
* *
26707752 TCATTTTACCTTTTGAGGGTATTTCGG
1 TCATTTTACCCTTTG-GGGTATTTCGA
* * * *
26707779 TTATTTTACCTTTTGGGGGTATTTTGG
1 TCATTTTACCCTTT-GGGGTATTTCGA
* *
26707806 TCATTTTATCCTTTGGTGGTATTTCGG
1 TCATTTTACCCTTTGG-GGTATTTCGA
* *
26707833 TCATTTTACCCTTCGGGGCTATTTCGG
1 TCATTTTACCCTTTGGGG-TATTTCGA
* *
26707860 TCATTTTATCCTTTAGGAGTATTTC-A
1 TCATTTTACCCTTT-GGGGTATTTCGA
26707886 GTCATTT
1 -TCATTT
26707893 GCCCACGAAT
Statistics
Matches: 340, Mismatches: 45, Indels: 49
0.78 0.10 0.11
Matches are distributed among these distances:
26 52 0.15
27 267 0.79
28 21 0.06
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (26 bp):
TCATTTTACCCTTTGGGGTATTTCGA
Found at i:26707541 original size:54 final size:53
Alignment explanation
Indices: 26707457--26707892 Score: 416
Period size: 54 Copynumber: 8.1 Consensus size: 53
26707447 GGTATAATAG
* *
26707457 TCATTTTACCCTAC-GGGGTATTTCAGTCATTTTACCCTTTGGGAGTATTTCGA
1 TCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTTGGG-GTATTTCGA
* *
26707510 TCATTTTACCTTTCGGGGGTATTTTAGTCATTTTACCCTTTAGGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTT-GGGGTATTTCGA
* * *** * *
26707564 TTATTTTGCCCTGAAGGGGTA-TTTAGTCATTTTACCATTCGGGGGTATTTCGA
1 TCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTT-TGGGGTATTTCGA
* * * **
26707617 TCATTTTACCCTTTGGGGGTA-TTTCGATCATTTTACTCTTCAAGGGTATTTCGA
1 TCATTTTACCCTTCGGGGGTATTTTAG-TCATTTTACCCTT-TGGGGTATTTCGA
* *
26707671 TCATTTTACCCTTTGGGCGTATTTTAGTCATTTTA-CCTTTAGGGGGTATTTCGA
1 TCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTT--GGGGTATTTCGA
** * * *
26707725 TCATTTTACCCTTCAAGGGTA-TTTCGATCATTTTACCTTTTGAGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTTAG-TCATTTTACCCTTTG-GGGTATTTCGA
* * * * * *
26707779 TTATTTTACCTTTTGGGGGTATTTTGGTCATTTTATCCTTTGGTGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTTGG-GGTATTTCGA
* ** * *
26707833 TCATTTTACCCTTCGGGGCTATTTCGGTCATTTTATCCTTTAGGAGTATTTC-A
1 TCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTT-GGGGTATTTCGA
26707886 GTCATTT
1 -TCATTT
26707893 GCCCACGAAT
Statistics
Matches: 319, Mismatches: 50, Indels: 27
0.81 0.13 0.07
Matches are distributed among these distances:
53 69 0.22
54 233 0.73
55 17 0.05
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (53 bp):
TCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTTGGGGTATTTCGA
Found at i:26707716 original size:81 final size:80
Alignment explanation
Indices: 26707445--26707892 Score: 416
Period size: 81 Copynumber: 5.6 Consensus size: 80
26707435 TCGACTCTTA
** * **
26707445 GGGGTATAATAGTCATTTTACCC--TACGGGGTATTTC-AGTCATTTTACCCTTTGGGAGTATTT
1 GGGGTATTTTAGTCATTTTACCCTTTAGGGGGTATTTCGA-TCATTTTACCCTTAAGG-GTATTT
26707507 CGATCATTTTA-CCTTT
64 CGATCATTTTACCCTTT
* * * *
26707523 CGGGGGTATTTTAGTCATTTTACCCTTTA-GGGGTATTTCGGTTATTTTGCCCTGAAGGGGTATT
1 --GGGGTATTTTAGTCATTTTACCCTTTAGGGGGTATTTCGATCATTTTACCCTTAA-GGGTATT
* * *
26707587 TAG-TCATTTTACCATTCG
63 TCGATCATTTTACCCTT-T
* *
26707605 GGGGTA-TTTCGATCATTTTACCCTTT-GGGGGTATTTCGATCATTTTACTCTTCAAGGGTATTT
1 GGGGTATTTTAG-TCATTTTACCCTTTAGGGGGTATTTCGATCATTTTACCCTT-AAGGGTATTT
26707668 CGATCATTTTACCCTTT
64 CGATCATTTTACCCTTT
26707685 GGGCGTATTTTAGTCATTTTA-CCTTTAGGGGGTATTTCGATCATTTTACCCTTCAAGGGTATTT
1 GGG-GTATTTTAGTCATTTTACCCTTTAGGGGGTATTTCGATCATTTTACCCTT-AAGGGTATTT
*
26707749 CGATCATTTTACCTTTT
64 CGATCATTTTACCCTTT
** * * * * * **
26707766 GAGGGTATTTCGGTTATTTTA-CCTTTTGGGGGTATTTTGGTCATTTTATCCTTTGGTGGTATTT
1 G-GGGTATTTTAGTCATTTTACCCTTTAGGGGGTATTTCGATCATTTTACCCTTAAG-GGTATTT
* *
26707830 CGGTCATTTTACCCTTC
64 CGATCATTTTACCCTTT
** * *
26707847 GGGGCTATTTCGGTCATTTTATCCTTTA-GGAGTATTTC-AGTCATTT
1 GGGG-TATTTTAGTCATTTTACCCTTTAGGGGGTATTTCGA-TCATTT
26707893 GCCCACGAAT
Statistics
Matches: 310, Mismatches: 40, Indels: 35
0.81 0.10 0.09
Matches are distributed among these distances:
79 4 0.01
80 90 0.29
81 201 0.65
82 15 0.05
ACGTcount: A:0.17, C:0.17, G:0.21, T:0.45
Consensus pattern (80 bp):
GGGGTATTTTAGTCATTTTACCCTTTAGGGGGTATTTCGATCATTTTACCCTTAAGGGTATTTCG
ATCATTTTACCCTTT
Found at i:26714843 original size:28 final size:28
Alignment explanation
Indices: 26714785--26714843 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
26714775 GTAATAGTAT
* *
26714785 AGTGTGGGCCTTAGCCCAATACAGTAAC
1 AGTGTGGGCCTTACCCCAATACAATAAC
*
26714813 AGTGTGGGCCTTACCCCAATACAATATC
1 AGTGTGGGCCTTACCCCAATACAATAAC
26714841 AGT
1 AGT
26714844 ACAGTTTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (28 bp):
AGTGTGGGCCTTACCCCAATACAATAAC
Found at i:26714928 original size:26 final size:26
Alignment explanation
Indices: 26714899--26714959 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
26714889 ATCGAAGTAA
*
26714899 AGCTGCTAGTAGT-AGCATCGCAGCAG
1 AGCTGCCAGTA-TCAGCATCGCAGCAG
*
26714925 AGCTGCCAGTATCAGTATCGCAGCAG
1 AGCTGCCAGTATCAGCATCGCAGCAG
26714951 AGCTGCCAG
1 AGCTGCCAG
26714960 AAACAATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 1 0.03
26 31 0.97
ACGTcount: A:0.26, C:0.26, G:0.30, T:0.18
Consensus pattern (26 bp):
AGCTGCCAGTATCAGCATCGCAGCAG
Found at i:26715151 original size:27 final size:26
Alignment explanation
Indices: 26715121--26715178 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
26715111 GACTCTTAAA
* *
26715121 GGTATAACAGTCATTTTATCCTATGGG
1 GGTATAACAGTCATTATACCCT-TGGG
** *
26715148 GGTATTTCGGTCATTATACCCTTGGG
1 GGTATAACAGTCATTATACCCTTGGG
26715174 GGTAT
1 GGTAT
26715179 TTTGATCATT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.38
Consensus pattern (26 bp):
GGTATAACAGTCATTATACCCTTGGG
Found at i:26715214 original size:27 final size:26
Alignment explanation
Indices: 26715128--26715432 Score: 244
Period size: 27 Copynumber: 11.3 Consensus size: 26
26715118 AAAGGTATAA
* *
26715128 CAGTCATTTTATCCTATGGGGGTATTT
1 CAGTCATTTTA-CCTTTAGGGGTATTT
* * * *
26715155 CGGTCATTATACCCTTGGGGGTATTT
1 CAGTCATTTTACCTTTAGGGGTATTT
*
26715181 -TGATCATTTTACCTTTTAGGGGTAATTT
1 CAG-TCATTTTACC-TTTAGGGGT-ATTT
26715209 -AGTCATTTTACCTTTCAGGGGTATTT
1 CAGTCATTTTACCTTT-AGGGGTATTT
* *
26715235 CAGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCTTTAG-GGGTATTT
26715262 C-GATCATTTTACCTTTAGGGGGTATTT
1 CAG-TCATTTTACCTTTA-GGGGTATTT
* *
26715289 CAGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCTTTAG-GGGTATTT
*
26715316 C-GATCATTTTACCCTTTGGGGGTATTT
1 CAG-TCATTTTA-CCTTTAGGGGTATTT
* * *
26715343 AAGTTATTTTACCTTTCATGGGTATTT
1 CAGTCATTTTACCTTT-AGGGGTATTT
* *
26715370 -TGATCATTTTACCCTTTGGGGGTATTT
1 CAG-TCATTTTA-CCTTTAGGGGTATTT
* *
26715397 CGGTCATTTTACC-CTACGGGGGTATTT
1 CAGTCATTTTACCTTTA--GGGGTATTT
*
26715424 CAATCATTT
1 CAGTCATTT
26715433 GGCCACGAAT
Statistics
Matches: 229, Mismatches: 30, Indels: 38
0.77 0.10 0.13
Matches are distributed among these distances:
25 2 0.01
26 41 0.18
27 167 0.73
28 19 0.08
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.44
Consensus pattern (26 bp):
CAGTCATTTTACCTTTAGGGGTATTT
Found at i:26715244 original size:54 final size:54
Alignment explanation
Indices: 26715128--26715432 Score: 295
Period size: 54 Copynumber: 5.7 Consensus size: 54
26715118 AAAGGTATAA
* * * * *
26715128 CAGTCATTTTATCC-TATGGGGGTATTTCGGTCATTATACCC-TTGGGGGTATTT
1 CAGTCATTTTACCCTTA-GAGGGTATTTCGATCATTTTACCCTTTAGGGGTATTT
* * *
26715181 -TGATCATTTTACCTTTTAG-GGGTAATTTAG-TCATTTTA-CCTTTCAGGGGTATTT
1 CAG-TCATTTTACC-CTTAGAGGGT-ATTTCGATCATTTTACCCTTT-AGGGGTATTT
*
26715235 CAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTA-CCTTTAGGGGGTATTT
1 CAGTCATTTTACCCTTAGAGGGTATTTCGATCATTTTACCCTTTA-GGGGTATTT
* *
26715289 CAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTTGGGGGTATTT
1 CAGTCATTTTACCCTTAGAGGGTATTTCGATCATTTTACCCTTTAGGGGTATTT
* * * * * *
26715343 AAGTTATTTTACCTTTCA-TGGGTATTTTGATCATTTTACCCTTTGGGGGTATTT
1 CAGTCATTTTACCCTT-AGAGGGTATTTCGATCATTTTACCCTTTAGGGGTATTT
* * *
26715397 CGGTCATTTTACCC-TACGGGGGTATTTCAATCATTT
1 CAGTCATTTTACCCTTA-GAGGGTATTTCGATCATTT
26715433 GGCCACGAAT
Statistics
Matches: 214, Mismatches: 24, Indels: 27
0.81 0.09 0.10
Matches are distributed among these distances:
52 4 0.02
53 32 0.15
54 170 0.79
55 8 0.04
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.44
Consensus pattern (54 bp):
CAGTCATTTTACCCTTAGAGGGTATTTCGATCATTTTACCCTTTAGGGGTATTT
Found at i:26715298 original size:81 final size:79
Alignment explanation
Indices: 26715129--26715432 Score: 362
Period size: 81 Copynumber: 3.8 Consensus size: 79
26715119 AAGGTATAAC
* * * **
26715129 AGTCATTTTATCCTATGGGGGTATTTCGGTCATTATACCCTT-GGGGGTATTTTGATCATTTTAC
1 AGTCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCAATCATTTTAC
26715193 CTTTTAGGGGTAATTT
66 C-TTTAGGGGT-ATTT
* * * *
26715209 AGTCATTTTA-CCTTTCAGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTA
1 AGTCATTTTACCCTTT-GGGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCAATCATTTTA
26715273 CCTTTAGGGGGTATTT
65 CCTTTA-GGGGTATTT
* * * * *
26715289 CAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTTGGGGGTATTT-AAGTTATTTT
1 -AGTCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCAA-TCATTTT
*
26715353 ACCTTTCATGGGTATTT
64 ACCTTT-AGGGGTATTT
* *
26715370 TGATCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTACGGGGGTATTTCAATCATTT
1 AG-TCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCAATCATTT
26715433 GGCCACGAAT
Statistics
Matches: 192, Mismatches: 23, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
79 4 0.02
80 43 0.22
81 138 0.72
82 7 0.04
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.44
Consensus pattern (79 bp):
AGTCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCAATCATTTTAC
CTTTAGGGGTATTT
Found at i:26719745 original size:28 final size:27
Alignment explanation
Indices: 26719705--26719769 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 27
26719695 CAGTAACAGT
* *
26719705 ACAGTGTTGGCCTTATCCCAAAACAGAA
1 ACAGTG-TGGCCTAAGCCCAAAACAGAA
* *
26719733 ACAGTGTGAGCCTAAGCCCGATACAGAA
1 ACAGTGTG-GCCTAAGCCCAAAACAGAA
26719761 ACAGTGTGG
1 ACAGTGTGG
26719770 TGCAAGTATG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 3 0.09
28 29 0.91
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
ACAGTGTGGCCTAAGCCCAAAACAGAA
Found at i:26719963 original size:22 final size:22
Alignment explanation
Indices: 26719933--26719989 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
26719923 AATGGCTAAG
* * *
26719933 AGCCGTAAACAGGATAGCTATA
1 AGCCATAAACAGAATAGCTACA
* *
26719955 AGCTATAAACAGAATGGCTACA
1 AGCCATAAACAGAATAGCTACA
26719977 AGCCATAAGACAG
1 AGCCATAA-ACAG
26719990 TAATGTGATT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 24 0.86
23 4 0.14
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16
Consensus pattern (22 bp):
AGCCATAAACAGAATAGCTACA
Found at i:26720139 original size:32 final size:31
Alignment explanation
Indices: 26720004--26720270 Score: 200
Period size: 32 Copynumber: 8.4 Consensus size: 31
26719994 GTGATTGGCT
* *
26720004 CAAAGCCATCAGTAGCAGTGA-TATGACCGGCA
1 CAAAGCCATCAGTAACAGT-ACTATGATC-GCA
* * * *
26720036 CACAGCCATCAGCAACGGTAAC-ATGATCAGCT
1 CAAAGCCATCAGTAACAGT-ACTATGATC-GCA
* * * * *
26720068 CAAAGCTAGCAGCAGCAGTGA-TATGACCGGCA
1 CAAAGCCATCAGTAACAGT-ACTATGATC-GCA
* * * *
26720100 CACAGCCATTAGTAACAGTGA-AATGATCAGTA
1 CAAAGCCATCAGTAACAGT-ACTATGATC-GCA
*
26720132 CAAAGCCATCAGTAACGGTACTATGATTCGCA
1 CAAAGCCATCAGTAACAGTACTATGA-TCGCA
26720164 CAAAGCCATCAGTAACAGTACTATGATCGACA
1 CAAAGCCATCAGTAACAGTACTATGATCG-CA
* *
26720196 CAAAGCCATTAGTAACAGTACTATGATCGGTA
1 CAAAGCCATCAGTAACAGTACTATGATC-GCA
** **
26720228 CAAAGCCATCAGTAATGGTACTATGATCGGTT
1 CAAAGCCATCAGTAACAGTACTATGATC-GCA
26720260 CAAAGCCATCA
1 CAAAGCCATCA
26720271 ACAGCACCGC
Statistics
Matches: 190, Mismatches: 39, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
31 4 0.02
32 183 0.96
33 3 0.02
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.19
Consensus pattern (31 bp):
CAAAGCCATCAGTAACAGTACTATGATCGCA
Found at i:26720264 original size:96 final size:95
Alignment explanation
Indices: 26720004--26720270 Score: 297
Period size: 96 Copynumber: 2.8 Consensus size: 95
26719994 GTGATTGGCT
* * * * * *
26720004 CAAAGCCATCAGTAGCAGTGATATGACCGGCACACAGCCATCAGCAACGGTAAC-ATGATCAGCT
1 CAAAGCCATTAGTAACAGTGATATGATCGGTACAAAGCCATCAGTAACGGT-ACTATGATC-GCT
* * * *
26720068 CAAAGCTAGCAGCAGCAGTGATATGACCGGCA
64 CAAAGCCATCAGCAACAGTGATATGACCGACA
* * * *
26720100 CACAGCCATTAGTAACAGTGAAATGATCAGTACAAAGCCATCAGTAACGGTACTATGATTCGCAC
1 CAAAGCCATTAGTAACAGTGATATGATCGGTACAAAGCCATCAGTAACGGTACTATGA-TCGCTC
* *
26720165 AAAGCCATCAGTAACAGT-ACTATGATCGACA
65 AAAGCCATCAGCAACAGTGA-TATGACCGACA
* *
26720196 CAAAGCCATTAGTAACAGT-ACTATGATCGGTACAAAGCCATCAGTAATGGTACTATGATCGGTT
1 CAAAGCCATTAGTAACAGTGA-TATGATCGGTACAAAGCCATCAGTAACGGTACTATGATC-GCT
26720260 CAAAGCCATCA
64 CAAAGCCATCA
26720271 ACAGCACCGC
Statistics
Matches: 144, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
95 6 0.04
96 136 0.94
97 2 0.01
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.19
Consensus pattern (95 bp):
CAAAGCCATTAGTAACAGTGATATGATCGGTACAAAGCCATCAGTAACGGTACTATGATCGCTCA
AAGCCATCAGCAACAGTGATATGACCGACA
Found at i:26720657 original size:81 final size:80
Alignment explanation
Indices: 26720563--26720852 Score: 397
Period size: 81 Copynumber: 3.6 Consensus size: 80
26720553 TTACCCACAA
* *
26720563 GGGCATTACGGTCATTTTACCCTAC-AGAGGTAATACGATCATTTTACCATACAGGGATATTACG
1 GGGCATTACGGTCATTTTACCCTACAAG-GGTATTACGATCATTTTACCCTACAGGG-TATTACG
26720627 GTCATTTTACCCTATAG
64 GTCATTTTACCCTATAG
*
26720644 GGGCATTACGGTCATTTTACCCTACAAGGGTATTACGATCATTTTACCCTACAATGGTATTACGG
1 GGGCATTACGGTCATTTTACCCTACAAGGGTATTACGATCATTTTACCCTAC-AGGGTATTACGG
26720709 TCATTTTACCCTATAG
65 TCATTTTACCCTATAG
*
26720725 GGTCATTACGGTCATTTTACCCTACAAGGGTATTAC-AGTCATTTTACCCTACAGAGGTATTACG
1 GGGCATTACGGTCATTTTACCCTACAAGGGTATTACGA-TCATTTTACCCTACAG-GGTATTACG
*
26720789 GTCATTTTATCCTATAG
64 GTCATTTTACCCTATAG
* * * * ** * *
26720806 GGGTATTTCGAT-ATTCTACCCTATGAGGGTATTTCGGTCATTTTACC
1 GGGCATTACGGTCATTTTACCCTACAAGGGTATTACGATCATTTTACC
26720853 TTATAGGGGA
Statistics
Matches: 189, Mismatches: 15, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
80 31 0.16
81 153 0.81
82 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (80 bp):
GGGCATTACGGTCATTTTACCCTACAAGGGTATTACGATCATTTTACCCTACAGGGTATTACGGT
CATTTTACCCTATAG
Found at i:26720866 original size:27 final size:27
Alignment explanation
Indices: 26720548--26720861 Score: 341
Period size: 27 Copynumber: 11.7 Consensus size: 27
26720538 GGGAAAAATT
* *
26720548 GTCA-TTTACCC-ACAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
26720573 GTCATTTTACCCTACAGAGGTAATACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
26720600 ATCATTTTACCATACAGGGATATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
26720627 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
26720654 GTCATTTTACCCTACAAGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* **
26720681 ATCATTTTACCCTACAATGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
26720708 GTCATTTTACCCTATA-GGGTCATTACG
1 GTCATTTTACCCTACAGGGGT-ATTACG
* *
26720735 GTCATTTTACCCTACAAGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
26720762 GTCATTTTACCCTACAGAGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
26720789 GTCATTTTATCCTATAGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
26720816 AT-ATTCTACCCTA-TGAGGGTATTTCG
1 GTCATTTTACCCTACAG-GGGTATTACG
* *
26720842 GTCATTTTACCTTATAGGGG
1 GTCATTTTACCCTACAGGGG
26720862 AATTTTACTC
Statistics
Matches: 243, Mismatches: 39, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
25 5 0.02
26 30 0.12
27 203 0.84
28 5 0.02
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:26738201 original size:40 final size:40
Alignment explanation
Indices: 26738106--26738297 Score: 210
Period size: 40 Copynumber: 4.8 Consensus size: 40
26738096 TTGATTCATT
* * *
26738106 GGCATAAAGCCTTCTAGGCACTAAGCCTGAGT-AC-CACC
1 GGCACAAAGCCTGCTAGGCACTAAGCCTGAATAACACACC
* * * *
26738144 GGTA-AGAAGCCTACTAGGCGCTAAGCCTGAATAACACACT
1 GGCACA-AAGCCTGCTAGGCACTAAGCCTGAATAACACACC
* *
26738184 GGCACAAAGCCTGCTAGGCACTAAGCGTGAATATCACACC
1 GGCACAAAGCCTGCTAGGCACTAAGCCTGAATAACACACC
* * * * *
26738224 GGCACTAAGCGTGTTAGGCATTAAGCCTGAATAACACAAC
1 GGCACAAAGCCTGCTAGGCACTAAGCCTGAATAACACACC
* *
26738264 GGCACGAAGCCTGCTAGGCACTAGGCCTGAATAA
1 GGCACAAAGCCTGCTAGGCACTAAGCCTGAATAA
26738298 TTTTAAGGTA
Statistics
Matches: 127, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
37 1 0.01
38 26 0.20
39 2 0.02
40 97 0.76
41 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.23, T:0.17
Consensus pattern (40 bp):
GGCACAAAGCCTGCTAGGCACTAAGCCTGAATAACACACC
Found at i:26744613 original size:12 final size:12
Alignment explanation
Indices: 26744593--26744622 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26744583 TCAGGCAGTT
*
26744593 ACACTGCCTAGC
1 ACACGGCCTAGC
26744605 ACACGGCCTAGC
1 ACACGGCCTAGC
26744617 ACACGG
1 ACACGG
26744623 GCGTGTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.40, G:0.23, T:0.10
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:26747117 original size:9 final size:9
Alignment explanation
Indices: 26747103--26747131 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
26747093 TTGCACCTAT
26747103 AGAGTTGAA
1 AGAGTTGAA
26747112 AGAGTTGAA
1 AGAGTTGAA
26747121 AGAGTTGAA
1 AGAGTTGAA
26747130 AG
1 AG
26747132 CACAGCTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.34, T:0.21
Consensus pattern (9 bp):
AGAGTTGAA
Found at i:26755290 original size:40 final size:40
Alignment explanation
Indices: 26755204--26755504 Score: 399
Period size: 40 Copynumber: 7.6 Consensus size: 40
26755194 TAGCACAACT
* * * *
26755204 CCTGCTAAGAACTAAGCCTGAGT-AC-CACCAACACGAAG
1 CCTGCTAGGCACTAAGCCTGAATAACACACCAGCACGAAG
* * *
26755242 CCTGCTAGGCGCTAAGCCTAAATAACACACCGGCACGAAG
1 CCTGCTAGGCACTAAGCCTGAATAACACACCAGCACGAAG
* *
26755282 CCTACTAGGCACTAAGCTTGAATAACACACCAGCACGAAG
1 CCTGCTAGGCACTAAGCCTGAATAACACACCAGCACGAAG
* * * *
26755322 CCTGCTAAGCACTAAGCTTGAATAACACACCGGCACAAAG
1 CCTGCTAGGCACTAAGCCTGAATAACACACCAGCACGAAG
* * *
26755362 CCTACTAGGCACTAAGCTTGAATAACACATCAGCACGAAG
1 CCTGCTAGGCACTAAGCCTGAATAACACACCAGCACGAAG
* * * *
26755402 CCTGCTAGGCACTAAGCCTAAATAATACACAAGTACGAAG
1 CCTGCTAGGCACTAAGCCTGAATAACACACCAGCACGAAG
26755442 CCTGCTAGGCACTAAGCCTGAATAACACACCAGCACGAAG
1 CCTGCTAGGCACTAAGCCTGAATAACACACCAGCACGAAG
*
26755482 CCTACTAGGCACTAAGCCTGAAT
1 CCTGCTAGGCACTAAGCCTGAAT
26755505 TACTTCTCCA
Statistics
Matches: 228, Mismatches: 33, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
38 18 0.08
39 2 0.01
40 208 0.91
ACGTcount: A:0.36, C:0.30, G:0.19, T:0.15
Consensus pattern (40 bp):
CCTGCTAGGCACTAAGCCTGAATAACACACCAGCACGAAG
Found at i:26767301 original size:43 final size:43
Alignment explanation
Indices: 26767253--26767339 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
26767243 TCATATCTCA
*
26767253 TTTCTCATATCATAATCATTTCTCATATTTGCCATTTCAATAT
1 TTTCTCATATCATAATCATTTATCATATTTGCCATTTCAATAT
* * **
26767296 TTTCTCATCTCATATTCATTTATCATATTTTTCATTTCAATAT
1 TTTCTCATATCATAATCATTTATCATATTTGCCATTTCAATAT
26767339 T
1 T
26767340 AATCACATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.26, C:0.20, G:0.01, T:0.53
Consensus pattern (43 bp):
TTTCTCATATCATAATCATTTATCATATTTGCCATTTCAATAT
Found at i:26767818 original size:8 final size:8
Alignment explanation
Indices: 26767805--26767829 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26767795 TAATTCAATT
26767805 CCCAAGTA
1 CCCAAGTA
26767813 CCCAAGTA
1 CCCAAGTA
26767821 CCCAAGTA
1 CCCAAGTA
26767829 C
1 C
26767830 TCATCTCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.40, G:0.12, T:0.12
Consensus pattern (8 bp):
CCCAAGTA
Found at i:26768535 original size:12 final size:12
Alignment explanation
Indices: 26768513--26768547 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
26768503 TATTATGTTT
26768513 TCATT-TTATTA
1 TCATTATTATTA
*
26768524 TCTTTATTATTA
1 TCATTATTATTA
26768536 TCATTATTATTA
1 TCATTATTATTA
26768548 AAGTTACTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.63
Consensus pattern (12 bp):
TCATTATTATTA
Found at i:26770354 original size:59 final size:60
Alignment explanation
Indices: 26770275--26770394 Score: 233
Period size: 59 Copynumber: 2.0 Consensus size: 60
26770265 ACATCGTTTA
26770275 ACAAAGACGAATCAAAACTATTCATTTCATTAAAACCCCTTTTCCCC-AAAACACTATGT
1 ACAAAGACGAATCAAAACTATTCATTTCATTAAAACCCCTTTTCCCCAAAAACACTATGT
26770334 ACAAAGACGAATCAAAACTATTCATTTCATTAAAACCCCTTTTCCCCAAAAACACTATGT
1 ACAAAGACGAATCAAAACTATTCATTTCATTAAAACCCCTTTTCCCCAAAAACACTATGT
26770394 A
1 A
26770395 GAACATTAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 47 0.78
60 13 0.22
ACGTcount: A:0.42, C:0.27, G:0.05, T:0.27
Consensus pattern (60 bp):
ACAAAGACGAATCAAAACTATTCATTTCATTAAAACCCCTTTTCCCCAAAAACACTATGT
Found at i:26775291 original size:23 final size:23
Alignment explanation
Indices: 26775255--26775302 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
26775245 CAGGTTCTGA
26775255 TTAGGCTTACTTTGGATTTAAAT
1 TTAGGCTTACTTTGGATTTAAAT
* *
26775278 TTAGGTTTATTTTGGATTTAAAT
1 TTAGGCTTACTTTGGATTTAAAT
26775301 TT
1 TT
26775303 TTTCAGAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.25, C:0.04, G:0.17, T:0.54
Consensus pattern (23 bp):
TTAGGCTTACTTTGGATTTAAAT
Found at i:26776381 original size:15 final size:15
Alignment explanation
Indices: 26776352--26776391 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
26776342 TATTAGTACA
26776352 TTATATATT-TATATT
1 TTATATATTATATA-T
26776367 TTATATATTAT-TAT
1 TTATATATTATATAT
26776381 TTAT-TATTATA
1 TTATATATTATA
26776392 CTAATTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 6 0.26
14 5 0.22
15 11 0.48
16 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATATATTATATAT
Found at i:26790050 original size:50 final size:51
Alignment explanation
Indices: 26789990--26790122 Score: 171
Period size: 50 Copynumber: 2.6 Consensus size: 51
26789980 TATCATTCGA
* * *
26789990 TACACGTAGTAGCCTTCACATAGTACTACACACATGATCAAA-CTTTTCGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACATGACCAAAGCCTTCCGG
* * *
26790040 TTCACGTAGTAG-CTTGCACATAGTACTACAAACGTGACCAAAGCCTTCCGG
1 TACACGTAGTAGCCTT-CACATAGTACTACACACATGACCAAAGCCTTCCGG
* *
26790091 TACACATAGTAGCCTGCACATAGTACTACACA
1 TACACGTAGTAGCCTTCACATAGTACTACACA
26790123 TGTGACCATT
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
49 3 0.04
50 34 0.49
51 31 0.44
52 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (51 bp):
TACACGTAGTAGCCTTCACATAGTACTACACACATGACCAAAGCCTTCCGG
Found at i:26790111 original size:51 final size:50
Alignment explanation
Indices: 26789990--26790177 Score: 198
Period size: 51 Copynumber: 3.7 Consensus size: 50
26789980 TATCATTCGA
* * * * *
26789990 TACACGTAGTAGCCTTCACATAGTACTACACACATGATCAAACTTTTCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCGG
* * *
26790040 TTCACGTAGTAGCTTGCACATAGTACTACAAACGTGACCAAAGCCTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CCTTCCGG
* * * * *
26790091 TACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTAT-CGA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-AACCT-TCCGG
* * *
26790142 TACACGCAGTAGCTTGCACTTAGTACTACACACGTG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTG
26790178 TTTATAGGTG
Statistics
Matches: 114, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
50 36 0.32
51 76 0.67
52 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCGG
Found at i:26793494 original size:22 final size:22
Alignment explanation
Indices: 26793469--26793515 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
26793459 CGATGTCACA
*
26793469 ACACATCAGGACCTGTGTCGCG
1 ACACATCAAGACCTGTGTCGCG
*
26793491 ACACATCAAGACTTGTGTCGCG
1 ACACATCAAGACCTGTGTCGCG
26793513 ACA
1 ACA
26793516 TATGAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.23, T:0.19
Consensus pattern (22 bp):
ACACATCAAGACCTGTGTCGCG
Found at i:26794848 original size:27 final size:27
Alignment explanation
Indices: 26794818--26794885 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
26794808 CATGCACTCA
* *
26794818 ATGCGTTTCATGCAAAACATGTATTTC
1 ATGCGTTCCATGCAAAACATGCATTTC
* **
26794845 ATGCATTCCATGCAACCCATGCATTTC
1 ATGCGTTCCATGCAAAACATGCATTTC
**
26794872 ATGCGAACCATGCA
1 ATGCGTTCCATGCA
26794886 TACAATGTGC
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (27 bp):
ATGCGTTCCATGCAAAACATGCATTTC
Found at i:26794865 original size:18 final size:18
Alignment explanation
Indices: 26794844--26794886 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
26794834 ACATGTATTT
26794844 CATGCATTCCATGC-AACC
1 CATGCATTCCATGCGAA-C
*
26794862 CATGCATTTCATGCGAAC
1 CATGCATTCCATGCGAAC
26794880 CATGCAT
1 CATGCAT
26794887 ACAATGTGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.26
Consensus pattern (18 bp):
CATGCATTCCATGCGAAC
Found at i:26796194 original size:12 final size:12
Alignment explanation
Indices: 26796177--26796216 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
26796167 AGATTGGAAT
26796177 TTTAAAAGAAAA
1 TTTAAAAGAAAA
26796189 TTTAAAA-AAAA
1 TTTAAAAGAAAA
26796200 TTT--AAGAAAA
1 TTTAAAAGAAAA
*
26796210 TATAAAA
1 TTTAAAA
26796217 AAAGAAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
9 2 0.08
10 6 0.25
11 7 0.29
12 9 0.38
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.28
Consensus pattern (12 bp):
TTTAAAAGAAAA
Found at i:26796201 original size:11 final size:11
Alignment explanation
Indices: 26796177--26796219 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
26796167 AGATTGGAAT
26796177 TTTAAAAGAAAA
1 TTTAAAA-AAAA
26796189 TTTAAAAAAAA
1 TTTAAAAAAAA
*
26796200 TTT-AAGAAAA
1 TTTAAAAAAAA
*
26796210 TATAAAAAAA
1 TTTAAAAAAA
26796220 GAAGAAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 8 0.30
11 12 0.44
12 7 0.26
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (11 bp):
TTTAAAAAAAA
Found at i:26797941 original size:41 final size:41
Alignment explanation
Indices: 26797884--26797966 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
26797874 TTTAGACATC
* * * *
26797884 TTAAATGTCTGTCTTAAATATTGCACATTAATTATGAGTCT
1 TTAAATGTCGGTCTTAAAAACTACACATTAATTATGAGTCT
* * *
26797925 TTAAATGTGGGTCTTAAAAACTACACTTTAATTATGTGTCT
1 TTAAATGTCGGTCTTAAAAACTACACATTAATTATGAGTCT
26797966 T
1 T
26797967 AGTTCTTACA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.43
Consensus pattern (41 bp):
TTAAATGTCGGTCTTAAAAACTACACATTAATTATGAGTCT
Found at i:26804110 original size:140 final size:136
Alignment explanation
Indices: 26803853--26804393 Score: 710
Period size: 140 Copynumber: 3.9 Consensus size: 136
26803843 AATTTTACAA
* *
26803853 ATTCATACAAAATATTAATTTTATATATTTTACCGAATTTATTAATATAAAAAATTATATTAATT
1 ATTCATACAAAATATTAATTGTA-ATATTTTACAGAATTTATTAATAT-AAAAATTATATTAATT
* * ** * * * *
26803918 AATTTCGGTGAAAATATAAAAGTCATAAAAAATAATATTATTTTGGAAAGAATATAAATAATATA
64 AATTTCGCTCAAAATATAAAAGAAATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATA
26803983 TGAATTTG
129 TGAATTTG
* *
26803991 ATTTATGCAAAATATTAATTGTACATATTTTATC-GAATTTATTAATATAAAAACATTTATATTA
1 ATTCATACAAAATATTAATTGTA-ATATTTTA-CAGAATTTATTAATAT-AAAA-A-TTATATTA
*
26804055 ATTCATTTCGCTCAAAATATAAAAGAAATGAAAATTAATATTCTTTTGGAAAGAATATAATTAAT
61 ATTAATTTCGCTCAAAATATAAAAGAAATGAAAATTAATATTCTTTTGGAAAGAATATAATTAAT
26804120 ATATGAATTTG
126 ATATGAATTTG
* * * * *
26804131 ATTCAAACTAAATATTAATTGTGGATATTTTACTGAATTTGTTAATATAAACAATTATATTAATT
1 ATTCATACAAAATATTAATTGT-AATATTTTACAGAATTTATTAATATAAA-AATTATATTAATT
* *
26804196 AATTTCGGC-CAAAATATAAAAGAAATGGAAATTAATATTCTTTTGGAAATAATATAATTAATAT
64 AATTTC-GCTCAAAATATAAAAGAAATGAAAATTAATATTCTTTTGGAAAGAATATAATT-A-AT
*
26804260 ATATGAAATTG
126 ATATGAATTTG
* *
26804271 ATTCATACAAAATATTAATTGTATTACTTTACAGAATTTATTAATATAAAAAGTTATATTAATTA
1 ATTCATACAAAATATTAATTGTAATATTTTACAGAATTTATTAATATAAAAA-TTATATTAATTA
* *
26804336 ATTTACG-TCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATT
65 ATTT-CGCTCAAAATATAAAAGAAATGAAAATTAATATTCTTTTGGAAAGAATATAATT
26804394 CTTTTTTTTC
Statistics
Matches: 359, Mismatches: 32, Indels: 23
0.87 0.08 0.06
Matches are distributed among these distances:
138 113 0.31
139 98 0.27
140 148 0.41
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (136 bp):
ATTCATACAAAATATTAATTGTAATATTTTACAGAATTTATTAATATAAAAATTATATTAATTAA
TTTCGCTCAAAATATAAAAGAAATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATG
AATTTG
Found at i:26804507 original size:76 final size:77
Alignment explanation
Indices: 26804371--26804519 Score: 246
Period size: 76 Copynumber: 1.9 Consensus size: 77
26804361 GGAAATTAAT
* *
26804371 ATTCTTTTGGAAAGAATATAATTCTTTTTTTTCTAACTTTCCATTTGCATTCTCTATTAATAAGG
1 ATTCTTTTGAAAAGAATATAATTCTCTTTTTTCTAACTTTCCATTTGCATTCTCTATTAATAAGG
26804436 GAATAATCCTAC
66 GAATAATCCTAC
* * *
26804448 ATTCTTTTGAAAAGAATATAATTC-CTTTTTTCTAACTTTCCATTTGCCTTCTTTATTAATTAGG
1 ATTCTTTTGAAAAGAATATAATTCTCTTTTTTCTAACTTTCCATTTGCATTCTCTATTAATAAGG
26804512 GAATAATC
66 GAATAATC
26804520 TTGATTTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
76 44 0.66
77 23 0.34
ACGTcount: A:0.30, C:0.15, G:0.09, T:0.46
Consensus pattern (77 bp):
ATTCTTTTGAAAAGAATATAATTCTCTTTTTTCTAACTTTCCATTTGCATTCTCTATTAATAAGG
GAATAATCCTAC
Found at i:26811294 original size:51 final size:49
Alignment explanation
Indices: 26811229--26811495 Score: 182
Period size: 51 Copynumber: 5.3 Consensus size: 49
26811219 ACATGGACTG
* *
26811229 TGTGTAGG-TCACTATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTA
1 TGTGTAGGCT-ACTATGTGAACG-GAAAGT-ATGGTCACATGTGTAGTACTA
* * * * *
26811280 TGTGTAGGCTACTATGTGTACCGGAATGAAAGGTCGCATGTGTAGTACTA
1 TGTGTAGGCTACTATGTG-AACGGAAAGTATGGTCACATGTGTAGTACTA
* * * * *
26811330 TGTGCAGGCTACTATGCGTACCGGATAGCT-TCGATCACATGTGTAGTACTA
1 TGTGTAGGCTACTATGTG-AACGGAAAG-TAT-GGTCACATGTGTAGTACTA
* *
26811381 TGTGTAGGCTACT-TCGTGTATC-GAATATTAATGGTCACATGTGTAGTACTA
1 TGTGTAGGCTACTAT-GTG-AACGGAA-AGT-ATGGTCACATGTGTAGTACTA
* * ** * * * * *
26811432 TGGGCAGGCTACTACATGAACCAGAAAGTTTGATCACGTGTGTAGTACAA
1 TGTGTAGGCTACTATGTGAA-CGGAAAGTATGGTCACATGTGTAGTACTA
*
26811482 TGTGAAGGCTACTA
1 TGTGTAGGCTACTA
26811496 CGTGTATCGA
Statistics
Matches: 172, Mismatches: 33, Indels: 23
0.75 0.14 0.10
Matches are distributed among these distances:
50 76 0.44
51 89 0.52
52 7 0.04
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGGCTACTATGTGAACGGAAAGTATGGTCACATGTGTAGTACTA
Found at i:26811534 original size:101 final size:102
Alignment explanation
Indices: 26811263--26811513 Score: 321
Period size: 101 Copynumber: 2.5 Consensus size: 102
26811253 AAAGTGATGG
* * *
26811263 TCACGTGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGAATGA-AA-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATC-GAATGATAATGGTCACATGTGTAGT
* ** * * *
26811326 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACTATGGGCAGGCTACTACACGAACCAGAAAGCTTCGA
* *
26811364 TCACATGTGTAGTACTATGTGTAGGCTACTTCGTGTATCGAAT-ATTAATGGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGAATGA-TAATGGTCACATGTGTAGT
* *
26811428 ACTATGGGCAGGCTACTACATGAACCAGAAAG-TTTGA
65 ACTATGGGCAGGCTACTACACGAACCAGAAAGCTTCGA
* *
26811465 TCACGTGTGTAGTACAATGTGAAGGCTACTACGTGTATCGAATGATAAT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGAATGATAAT
26811514 AGTTAAATGA
Statistics
Matches: 129, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
99 1 0.01
100 4 0.03
101 84 0.65
102 40 0.31
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
CTATGGGCAGGCTACTACACGAACCAGAAAGCTTCGA
Found at i:26817575 original size:138 final size:138
Alignment explanation
Indices: 26817226--26817782 Score: 796
Period size: 138 Copynumber: 4.0 Consensus size: 138
26817216 AAGAACATAG
* *
26817226 ATATAATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTATCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACCAAATTTATT
* * *
26817291 AATATAAACAGCTATATTAATTACTTTC-AGTCAAAATATAAATGACATGAAAATTAATATTCTT
66 AATATAAACAGTTATATTAATTAATTTCGA-TCAAAATATAAAAGACATGAAAATTAATATTCTT
26817355 TTGG-AAAA
130 TTGGAAAAA
* * * * *
26817363 ATATAATTAATAGATGAATTTGATTAATACAAAATATTATTTGTATATATTTTTCCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACCAAATTTATT
* * *
26817428 AATATAAACAGTTATATTAATCAATTTCGATCAAAATAT-AAAGACATGTAAATAAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
26817492 TGGAAAAA
131 TGGAAAAA
* * ** ***
26817500 ATATAATTAATATATGAATTTTGATTCATACAAAATACTAGGTGTATATATTTTACTGGATTTAT
1 ATATAATTAATATATGAA-TTTGATTCATAAAAAATATTAATTGTATATATTTTACCAAATTTAT
* * * * *
26817565 TCATATAAACAGTTGTATTAATTAATTTTGGTTAAAATATAAAAGACATGAAAATTAATATTCTT
65 TAATATAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTT
*
26817630 TTGGAAAGA
130 TTGGAAAAA
*
26817639 ATATGATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACCAAATTTATT
* * *
26817704 AATATAAACAATTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTTTTT
66 AATATAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
*
26817769 TGGAAAGA
131 TGGAAAAA
26817777 ATATAA
1 ATATAA
26817783 CTCCTTTTTC
Statistics
Matches: 368, Mismatches: 48, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
136 25 0.07
137 113 0.31
138 183 0.50
139 47 0.13
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACCAAATTTATT
AATATAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
TGGAAAAA
Found at i:26817903 original size:75 final size:77
Alignment explanation
Indices: 26817760--26817921 Score: 195
Period size: 75 Copynumber: 2.1 Consensus size: 77
26817750 ATGGAAATTA
* *
26817760 ATATT-TTTTTGGAAAGAATATAACTCCTTTTTCTAACTTTAAATTTGCATTCTTTGTTAACAAA
1 ATATTCTTTTTGGAAAGAATATAACTCCTTTTTCTAACTTTAAATTTGCATTCTCTATTAACAAA
26817824 GGAATAATCCT-
66 GGAATAATCCTG
* * ** * * * *
26817835 ATATTCTTTTT-GAAAGAATATAATTCTTTTTTCTAACTTTCCATTTTCCTTCTCTATTAATAAG
1 ATATTCTTTTTGGAAAGAATATAACTCCTTTTTCTAACTTTAAATTTGCATTCTCTATTAACAAA
*
26817899 GGAATAATCTTG
66 GGAATAATCCTG
*
26817911 ATTTTCTTTTT
1 ATATTCTTTTT
26817922 TAATATGTGA
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
75 58 0.79
76 15 0.21
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.49
Consensus pattern (77 bp):
ATATTCTTTTTGGAAAGAATATAACTCCTTTTTCTAACTTTAAATTTGCATTCTCTATTAACAAA
GGAATAATCCTG
Found at i:26824777 original size:24 final size:24
Alignment explanation
Indices: 26824714--26824765 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
26824704 GTTCTAGAAG
* * *
26824714 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
26824738 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
26824762 ATTT
1 ATTT
26824766 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:26829895 original size:25 final size:25
Alignment explanation
Indices: 26829863--26829932 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
26829853 CAGGCCTATT
*
26829863 TTCACAGCTCGTATGAGCATTTTGA
1 TTCACAGCTCGTGTGAGCATTTTGA
26829888 TTCACAGCTCGTGTGAGCATTTTGA
1 TTCACAGCTCGTGTGAGCATTTTGA
*
26829913 TTCACAGCTCATGTGAGCAT
1 TTCACAGCTCGTGTGAGCAT
26829933 ACATGTACAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (25 bp):
TTCACAGCTCGTGTGAGCATTTTGA
Found at i:26830588 original size:15 final size:16
Alignment explanation
Indices: 26830557--26830592 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
26830547 TTTAAGTTAA
*
26830557 AGAAAGTAAATGCAAT
1 AGAAAGTAAATGAAAT
26830573 AGAAAGT-AATGAAAT
1 AGAAAGTAAATGAAAT
26830588 AGAAA
1 AGAAA
26830593 TGAAAGTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.61, C:0.03, G:0.19, T:0.17
Consensus pattern (16 bp):
AGAAAGTAAATGAAAT
Found at i:26838184 original size:21 final size:21
Alignment explanation
Indices: 26838159--26838206 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
26838149 TTAGTATGAT
26838159 TTTAAAATATAAAATATATTA
1 TTTAAAATATAAAATATATTA
* * * *
26838180 TTTAAATTGTTAATTATATTA
1 TTTAAAATATAAAATATATTA
26838201 TTTAAA
1 TTTAAA
26838207 TGGATTATAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
TTTAAAATATAAAATATATTA
Found at i:26843125 original size:6 final size:6
Alignment explanation
Indices: 26843116--26843143 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
26843106 ATTCAAAAAA
26843116 AAAATC AAAATC AAAATC AAAATC AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAA
26843144 ACAGAAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATC
Found at i:26843131 original size:18 final size:18
Alignment explanation
Indices: 26843108--26843157 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
26843098 GGGTTCAGAT
26843108 TCAAAAAAAAAATCAAAA
1 TCAAAAAAAAAATCAAAA
**
26843126 TCAAAATCAAAATCAAAA
1 TCAAAAAAAAAATCAAAA
*
26843144 ACAGAAAAAGAAAA
1 TCA-AAAAA-AAAA
26843158 GAAAAAATCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 18 0.72
19 3 0.12
20 4 0.16
ACGTcount: A:0.74, C:0.12, G:0.04, T:0.10
Consensus pattern (18 bp):
TCAAAAAAAAAATCAAAA
Found at i:26844993 original size:87 final size:87
Alignment explanation
Indices: 26844846--26845246 Score: 676
Period size: 87 Copynumber: 4.6 Consensus size: 87
26844836 AAATCAGTGA
* * *
26844846 AGATCGAAAATAAAGCCTTGCCTGCATCGGTTGCAGTGGAGCTGGTTAAAGATAGTAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
26844911 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
26844933 AGATCGAAAGCAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
26844998 CTTCCTGCGTTAACAGCGAAAC
66 CTTCCTGCGTTAACAGCGAAGC
* * *
26845020 AGATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAAATAACAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
26845085 CTTCTTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
26845107 AGATCGAAAGCAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
26845172 CTTCCTGCATTGACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
26845194 AGATCGGAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAT
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAT
26845247 GATAGAACTT
Statistics
Matches: 292, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 292 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGC
Found at i:26845576 original size:128 final size:128
Alignment explanation
Indices: 26845254--26845577 Score: 549
Period size: 128 Copynumber: 2.5 Consensus size: 128
26845244 GATGATAGAA
**
26845254 CTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGTAAATCTTATCTTCAAGTGTAAGGAA
1 CTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAA
* * *
26845319 GAAGATTTAAGCCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTAGAAATTATAGAT
66 GCAGATTTAAGCCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTAGAAATTACAAAT
* *
26845382 CTTGTCTCCCTAAGCAGTAGCAGAGCAGATCGAAGATGGCGAATCTTATCTTCAAGTGTAAGGAA
1 CTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAA
*
26845447 GCAGATTTAAGCCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAAAT
66 GCAGATTTAAGCCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTAGAAATTACAAAT
* * *
26845510 CTTGTCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGACGAATCTTATCTTCAAGTGTAAGGAA
1 CTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAA
26845575 GCA
66 GCA
26845578 AATTGGAGTC
Statistics
Matches: 183, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
128 183 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (128 bp):
CTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAA
GCAGATTTAAGCCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTAGAAATTACAAAT
Found at i:26847509 original size:21 final size:21
Alignment explanation
Indices: 26847484--26847531 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
26847474 TTAGTATGAT
26847484 TTTAAAATATAAAATATATTA
1 TTTAAAATATAAAATATATTA
* * * *
26847505 TTTAAATTGTTAATTATATTA
1 TTTAAAATATAAAATATATTA
26847526 TTTAAA
1 TTTAAA
26847532 TGCATTATAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
TTTAAAATATAAAATATATTA
Found at i:26853016 original size:10 final size:10
Alignment explanation
Indices: 26853001--26853035 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
26852991 TTATGTATTC
26853001 TAATTAAATT
1 TAATTAAATT
26853011 TAATTAAATTT
1 TAATTAAA-TT
*
26853022 TAAATAAATT
1 TAATTAAATT
26853032 TAAT
1 TAAT
26853036 ACATCTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
TAATTAAATT
Found at i:26853465 original size:21 final size:20
Alignment explanation
Indices: 26853428--26853469 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26853418 TTATATTCAA
26853428 TACTCATTTAATATTAAAAT
1 TACTCATTTAATATTAAAAT
* * *
26853448 TACTTATTTTATATTTAAAT
1 TACTCATTTAATATTAAAAT
26853468 TA
1 TA
26853470 TTTTTTAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (20 bp):
TACTCATTTAATATTAAAAT
Found at i:26854136 original size:4 final size:4
Alignment explanation
Indices: 26854127--26854180 Score: 81
Period size: 4 Copynumber: 13.5 Consensus size: 4
26854117 TGGGATTGGA
* * *
26854127 ACAT ACAT ACGT ACAT ACAT ACAT ACAT ACAT AAAT ACAT ACAT ACCT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
26854175 ACAT AC
1 ACAT AC
26854181 GTACGTATGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.48, C:0.26, G:0.02, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:26854624 original size:2 final size:2
Alignment explanation
Indices: 26854617--26854657 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
26854607 CAAATGCATA
26854617 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
26854658 AACCTAATAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:26864086 original size:33 final size:34
Alignment explanation
Indices: 26864038--26864104 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
26864028 ATACAACATG
* *
26864038 CAATAATAGTCTGGGCCTGAGCCCTATTCAGTAA
1 CAATAATAGTCTGGGCCTGAGCCCAATACAGTAA
* *
26864072 CAAT-ATAGTGTGGGCCTTAGCCCAATACAGTAA
1 CAATAATAGTCTGGGCCTGAGCCCAATACAGTAA
26864105 TAGTGTGGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (34 bp):
CAATAATAGTCTGGGCCTGAGCCCAATACAGTAA
Found at i:26864116 original size:28 final size:28
Alignment explanation
Indices: 26864076--26864131 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
26864066 CAGTAACAAT
26864076 ATAGTGTGGGCCTTAGCCCAATACAGTA
1 ATAGTGTGGGCCTTAGCCCAATACAGTA
26864104 ATAGTGTGGGCCTTAGCCCAATACAGTA
1 ATAGTGTGGGCCTTAGCCCAATACAGTA
26864132 TCAGTACAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (28 bp):
ATAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:26864143 original size:33 final size:30
Alignment explanation
Indices: 26864049--26864131 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 30
26864039 AATAATAGTC
* * *
26864049 TGGGCCTGAGCCCTATTCAGTAACAATATAGTG
1 TGGGCCTTAGCCCAATACAGT-AC-ATA-AGTG
26864082 TGGGCCTTAGCCCAATACAGTA-AT-AGTG
1 TGGGCCTTAGCCCAATACAGTACATAAGTG
26864110 TGGGCCTTAGCCCAATACAGTA
1 TGGGCCTTAGCCCAATACAGTA
26864132 TCAGTACAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
28 26 0.55
30 2 0.04
32 1 0.02
33 18 0.38
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (30 bp):
TGGGCCTTAGCCCAATACAGTACATAAGTG
Found at i:26864274 original size:26 final size:26
Alignment explanation
Indices: 26864244--26864311 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
26864234 ACCAATATTG
* *
26864244 CAGCAAAGCTGCTAGTAATAGTATCGT
1 CAGCAAAGCTGCCAGTAACAGTAT-GT
* *
26864271 -AGCAAACCTGCCAGTAACAGTATTT
1 CAGCAAAGCTGCCAGTAACAGTATGT
26864296 CAGCAAAGCTGCCAGT
1 CAGCAAAGCTGCCAGT
26864312 GCAGTATACT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 1 0.03
26 34 0.97
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.22
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAACAGTATGT
Found at i:26868514 original size:22 final size:22
Alignment explanation
Indices: 26868420--26868516 Score: 76
Period size: 22 Copynumber: 4.5 Consensus size: 22
26868410 AGGTTAGAAA
*
26868420 GAAATGGTTTAGA-TTTAGT-C
1 GAAATGGTTTAGATTTTGGTAC
*
26868440 GAAATGGTTTAGGTTTTAGGTAC
1 GAAATGGTTTAGATTTT-GGTAC
* *
26868463 GAAATTGGTTTCTG-GTTTGG-AC
1 GAAA-TGGTTT-AGATTTTGGTAC
* *
26868485 AAAATAGTTTAGATTTTGGTAC
1 GAAATGGTTTAGATTTTGGTAC
*
26868507 GAAATAGTTT
1 GAAATGGTTT
26868517 GGGATTGGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
20 13 0.21
21 13 0.21
22 18 0.30
23 7 0.11
24 9 0.15
25 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.40
Consensus pattern (22 bp):
GAAATGGTTTAGATTTTGGTAC
Found at i:26872766 original size:17 final size:17
Alignment explanation
Indices: 26872717--26872767 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
26872707 CAATTTCTCA
*
26872717 CACTCATTTTTC-TTTT
1 CACTCTTTTTTCTTTTT
26872733 C-CT-TCTTTTTCTATTTT
1 CACTCT-TTTTTCT-TTTT
26872750 CACTCTTTTTTCTTTTT
1 CACTCTTTTTTCTTTTT
26872767 C
1 C
26872768 CTTCATGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
15 8 0.28
16 1 0.03
17 10 0.34
18 9 0.31
19 1 0.03
ACGTcount: A:0.08, C:0.25, G:0.00, T:0.67
Consensus pattern (17 bp):
CACTCTTTTTTCTTTTT
Found at i:26877298 original size:23 final size:23
Alignment explanation
Indices: 26877250--26877298 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
26877240 TCTGTTCTTT
* *
26877250 TTTCTTTTTTGCTATTTTTCTCC
1 TTTCTTTTTTCCTATTTTTATCC
*
26877273 TTTCTTTTCTTCCT-TTTTTATTC
1 TTTCTTTT-TTCCTATTTTTATCC
26877296 TTT
1 TTT
26877299 TGTGTGCTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.73
Consensus pattern (23 bp):
TTTCTTTTTTCCTATTTTTATCC
Found at i:26877917 original size:50 final size:49
Alignment explanation
Indices: 26877842--26878017 Score: 174
Period size: 50 Copynumber: 3.5 Consensus size: 49
26877832 TAACTTTGGA
* *
26877842 AAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGCAATGTTAGGGAGGC
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTT-GGGAGGC
* ** * *
26877892 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACTGCTTGGGAGGT
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATG-TTGGGAGGC
* * * * * * *
26877942 AAGATTCGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCGGGGAAGC
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGT-TGGGAGGC
*
26877992 AAGATTCATCGATT-TGGCTTTAATCT
1 AAGATTCACCG-TTGTGGCTTTAATCT
26878018 GTTCCACTAC
Statistics
Matches: 99, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
49 1 0.01
50 95 0.96
51 3 0.03
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (49 bp):
AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTTGGGAGGC
Found at i:26878015 original size:100 final size:100
Alignment explanation
Indices: 26877858--26878046 Score: 283
Period size: 100 Copynumber: 1.9 Consensus size: 100
26877848 CGCCATTGTG
* * *
26877858 GCTTTAATCTTTTTAACTGCAATGTTAGGGAGGCAAGATTCACCGTTGTGGCTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACCGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCC
* *
26877923 ACTGCA-CTGCTTGGGAGGTAAGATTCGCTGCTGTA
66 ACTACATC-GCTTGGGAGATAAGATTCGCTGCTGTA
* *
26877958 GCTTTAATCTTTTTAACCGCAATGTCGGGGAAGCAAGATTCATCGATT-TGGCTTTAATCTGTTC
1 GCTTTAATCTTTTTAACCGCAATGTCAGGGAAGCAAGATTCACCG-TTGTGGCTTTAATCTGTTC
26878022 CACTACATCGCTTGGGAGATAAGAT
65 CACTACATCGCTTGGGAGATAAGAT
26878047 ATGTAATTCT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
100 77 0.96
101 3 0.04
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.34
Consensus pattern (100 bp):
GCTTTAATCTTTTTAACCGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCC
ACTACATCGCTTGGGAGATAAGATTCGCTGCTGTA
Found at i:26878206 original size:44 final size:44
Alignment explanation
Indices: 26878144--26878523 Score: 223
Period size: 44 Copynumber: 8.2 Consensus size: 44
26878134 CCTCTATTTT
* * *
26878144 AATCCGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
26878188 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTTCTGGTTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
26878232 AATTTGATGCGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTC
1 AA--T-CT--G--CT-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * * *
26878286 AATCCGCTCCACTATAATCTCAGGGAGATAGGATTATTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* *
26878330 AATATGCTCTACTGTAATCTCAGGGAGATAAGATT--TAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
** *
26878372 AATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * ** * *
26878416 AATTTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCTTTTA-TTTT
1 AA--T-CT--G--CT-C-C-ACTGTAATCTCAGGGAGATAAGAT-TACTAGCTTC
* * *
26878470 AATTTGCTCCACTGTAATCTCACGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
26878514 AATCTGCTCC
1 AATCTGCTCC
26878524 GCTACTGTTT
Statistics
Matches: 261, Mismatches: 45, Indels: 60
0.71 0.12 0.16
Matches are distributed among these distances:
42 41 0.16
43 6 0.02
44 130 0.50
45 3 0.01
46 4 0.02
47 6 0.02
49 4 0.02
51 5 0.02
52 4 0.02
53 2 0.01
54 50 0.19
55 5 0.02
56 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
Found at i:26878355 original size:142 final size:142
Alignment explanation
Indices: 26878094--26878365 Score: 481
Period size: 142 Copynumber: 1.9 Consensus size: 142
26878084 AGATAAGACC
*
26878094 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTCTATTTTAATCCGCTCCACTAT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTCTATTTCAATCCGCTCCACTAT
* * *
26878159 AATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTT
66 AATCTCAGGGAGATAGGATTACTAGCTTCAATATGCTCCACTGTAATCTCAGGGAGATAAGATTT
26878224 CTGGTTTCAATT
131 CTGGTTTCAATT
*
26878236 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTCAATCCGCTCCACTAT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTCTATTTCAATCCGCTCCACTAT
* *
26878301 AATCTCAGGGAGATAGGATTATTAGCTTCAATATGCTCTACTGTAATCTCAGGGAGATAAGATTT
66 AATCTCAGGGAGATAGGATTACTAGCTTCAATATGCTCCACTGTAATCTCAGGGAGATAAGATTT
26878366 AGCTTCAATC
Statistics
Matches: 123, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
142 123 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (142 bp):
TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTCTATTTCAATCCGCTCCACTAT
AATCTCAGGGAGATAGGATTACTAGCTTCAATATGCTCCACTGTAATCTCAGGGAGATAAGATTT
CTGGTTTCAATT
Found at i:26878399 original size:86 final size:86
Alignment explanation
Indices: 26878248--26878522 Score: 223
Period size: 86 Copynumber: 3.0 Consensus size: 86
26878238 ATGCGATCTA
*
26878248 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTCAATCCGCTCCACTATAATCTCAGGGAG
1 CTCTACTGTAACTTCAGAGAGATAAGA--CTTTACTTCAATCCGCTCCACTATAATCTCAGGGAG
*
26878313 ATAGGATTAT-TAGCTTCAATATG
64 ATAAGATT-TCTAGCTTCAATATG
* * ** *
26878336 CTCTACTGTAA-TCTCAGGGAGATAAGA-TTTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAG
1 CTCTACTGTAACT-TCAGAGAGATAAGACTTTA-CTTCAATCCGCTCCACTATAATCTCAGGGAG
26878399 ATAAGATTTCTAGCTTCAATTTGATGCG
64 ATAAGATTTCTAGCTTCAA--T-AT--G
* * * ** *
26878427 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCTTTTATTTTAATTTGCTCCACTGTAATCTCA
1 -----CTCTACTGTAACTTCAGAGAGATAAGA-C-TTTACTTCAATCCGCTCCACTATAATCTCA
* * * *
26878492 CGGAGATAGGATTACTAGCTTCAATCTG
59 GGGAGATAAGATTTCTAGCTTCAATATG
26878520 CTC
1 CTC
26878523 CGCTACTGTT
Statistics
Matches: 152, Mismatches: 18, Indels: 34
0.75 0.09 0.17
Matches are distributed among these distances:
85 5 0.03
86 42 0.28
87 1 0.01
88 28 0.18
89 2 0.01
91 1 0.01
93 1 0.01
95 1 0.01
96 25 0.16
98 42 0.28
99 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.34
Consensus pattern (86 bp):
CTCTACTGTAACTTCAGAGAGATAAGACTTTACTTCAATCCGCTCCACTATAATCTCAGGGAGAT
AAGATTTCTAGCTTCAATATG
Found at i:26878490 original size:184 final size:185
Alignment explanation
Indices: 26878149--26878523 Score: 590
Period size: 184 Copynumber: 2.0 Consensus size: 185
26878139 ATTTTAATCC
* *
26878149 GCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTTAGGGA
1 GCTCCACTATAATCTCAGGGAGATAAGATTA-TAGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
* * *
26878214 GATAAGATTTCTGGTTTCAATTTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT
65 GATAAGATTTCTAGCTTCAATTTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCT
* *
26878279 TTATTTCAATCCGCTCCACTATAATCTCAGGGAGATAGGATTATTAGCTTCAATAT
130 TTATTTCAATCCGCTCCACTATAATCTCACGGAGATAGGATTACTAGCTTCAATAT
* * *
26878335 GCTCTACTGTAATCTCAGGGAGATAAGATT-TAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAG
1 GCTCCACTATAATCTCAGGGAGATAAGATTATAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
*
26878399 ATAAGATTTCTAGCTTCAATTTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCTTT
66 ATAAGATTTCTAGCTTCAATTTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTT
* ** * *
26878464 TATTTTAATTTGCTCCACTGTAATCTCACGGAGATAGGATTACTAGCTTCAATCT
131 TATTTCAATCCGCTCCACTATAATCTCACGGAGATAGGATTACTAGCTTCAATAT
26878519 GCTCC
1 GCTCC
26878524 GCTACTGTTT
Statistics
Matches: 172, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
184 145 0.84
186 27 0.16
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (185 bp):
GCTCCACTATAATCTCAGGGAGATAAGATTATAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
ATAAGATTTCTAGCTTCAATTTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTT
TATTTCAATCCGCTCCACTATAATCTCACGGAGATAGGATTACTAGCTTCAATAT
Found at i:26878510 original size:98 final size:96
Alignment explanation
Indices: 26878336--26878516 Score: 238
Period size: 98 Copynumber: 1.9 Consensus size: 96
26878326 CTTCAATATG
* * ** *
26878336 CTCTACTGTAATCTCAGGGAGATAAGATTTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGAT
1 CTCTACTGTAACCTCAGAGAGATAAGATTTAGCTTCAATCTGCTCCACTGTAATCTCACGGAGAT
*
26878401 AAGATTTCTAGCTTCAATTTGATGCGATCTA
66 AAGATTACTAGCTTCAATTTGATGCGATCTA
* * *
26878432 CTCTACTGTAACCTCAGAGAGATAAGATCTTTTA-TTTTAATTTGCTCCACTGTAATCTCACGGA
1 CTCTACTGTAACCTCAGAGAGATAAGA---TTTAGCTTCAATCTGCTCCACTGTAATCTCACGGA
*
26878496 GATAGGATTACTAGCTTCAAT
63 GATAAGATTACTAGCTTCAAT
26878517 CTGCTCCGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
96 25 0.35
98 43 0.60
99 4 0.06
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (96 bp):
CTCTACTGTAACCTCAGAGAGATAAGATTTAGCTTCAATCTGCTCCACTGTAATCTCACGGAGAT
AAGATTACTAGCTTCAATTTGATGCGATCTA
Found at i:26878764 original size:87 final size:87
Alignment explanation
Indices: 26878640--26878961 Score: 520
Period size: 87 Copynumber: 3.7 Consensus size: 87
26878630 AAAGATCTGC
*
26878640 TCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTTGATCTTCTTCG
1 TCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTTCTTCG
* *
26878705 CTGTCAATGCAGGAAGGCAAGA
66 CTGTTAACGCAGGAAGGCAAGA
* * * *
26878727 TCTGCTATCTTTAACCAGCTCCATTGCAATCGATGGAGGCAAGGCTTTGTTTTTGATCTGCTTCG
1 TCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTTCTTCG
*
26878792 CTATTAACGCAGGAAGGCAAGA
66 CTGTTAACGCAGGAAGGCAAGA
* * *
26878814 TCTTCTATTTTTAACCAGCTCCACTGCAATCGATGGAGGCAAGGCTTTGTTTTCGAT-TTACTTC
1 TCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTT-CTTC
26878878 GCTGTTAACGCAGGAAGGCAAGA
65 GCTGTTAACGCAGGAAGGCAAGA
*
26878901 TCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTTC
1 TCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTTC
26878962 ACTGATCTGT
Statistics
Matches: 217, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
86 1 0.00
87 214 0.99
88 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (87 bp):
TCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTTCTTCG
CTGTTAACGCAGGAAGGCAAGA
Found at i:26878812 original size:43 final size:42
Alignment explanation
Indices: 26878763--26878899 Score: 98
Period size: 43 Copynumber: 3.2 Consensus size: 42
26878753 CAATCGATGG
26878763 AGGCAAGGCTTTGTTTTTGATCTGCTTCGCTATTAACGCAGGA
1 AGGCAAGGCTTTGTTTTTGATCTGCTTCGCT-TTAACGCAGGA
* * * * * * * **
26878806 AGGCAAGATCTTCTATTTTTAACCAGCTCCACTGCAATCG-ATGG-
1 AGGCAAG-GCTT-TGTTTTTGATCTGCTTCGCTTTAA-CGCA-GGA
* * *
26878850 AGGCAAGGCTTTGTTTTCGATTTACTTCGCTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTTGATCTGCTTCGCT-TTAACGCAGGA
26878893 AGGCAAG
1 AGGCAAG
26878900 ATCTGCTATC
Statistics
Matches: 66, Mismatches: 21, Indels: 14
0.65 0.21 0.14
Matches are distributed among these distances:
42 15 0.23
43 20 0.30
44 13 0.20
45 18 0.27
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (42 bp):
AGGCAAGGCTTTGTTTTTGATCTGCTTCGCTTTAACGCAGGA
Found at i:26878856 original size:44 final size:43
Alignment explanation
Indices: 26878644--26878860 Score: 122
Period size: 45 Copynumber: 5.0 Consensus size: 43
26878634 ATCTGCTCTG
* *
26878644 CTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTT
1 CTATTTTTAACCAGCTCCACTGCAATCGATGGAGGCAAGGCTT
* * * ** * * * *
26878687 -TGTTTTTGATCTTCTTCGCTGTCAAT-GCA-GGAAGGCAAGATCTG
1 CTATTTTTAACCAGCTCCACTG-CAATCG-ATGG-AGGCAAG-GCTT
* *
26878731 CTATCTTTAACCAGCTCCATTGCAATCGATGGAGGCAAGGCTT
1 CTATTTTTAACCAGCTCCACTGCAATCGATGGAGGCAAGGCTT
* * * * * * ** *
26878774 -TGTTTTTGATCTGCTTCGCTATTAA-CGCA-GGAAGGCAAGATCTT
1 CTATTTTTAACCAGCTCCACT-GCAATCG-ATGG-AGGCAAG-GCTT
26878818 CTATTTTTAACCAGCTCCACTGCAATCGATGGAGGCAAGGCTT
1 CTATTTTTAACCAGCTCCACTGCAATCGATGGAGGCAAGGCTT
26878861 TGTTTTCGAT
Statistics
Matches: 118, Mismatches: 42, Indels: 28
0.63 0.22 0.15
Matches are distributed among these distances:
42 32 0.27
43 26 0.22
44 27 0.23
45 33 0.28
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (43 bp):
CTATTTTTAACCAGCTCCACTGCAATCGATGGAGGCAAGGCTT
Found at i:26881155 original size:30 final size:29
Alignment explanation
Indices: 26881066--26881163 Score: 115
Period size: 30 Copynumber: 3.3 Consensus size: 29
26881056 TCTTTTTTCC
*
26881066 TTTTTTTCATATTTTTTATTTTGACTTTAA
1 TTTTTTTC-TATTTTTTATTTTGACTTTGA
** *
26881096 TTGATTTCTCTTTTTTACTTTTGACTTTGA
1 TTTTTTTCTATTTTTTA-TTTTGACTTTGA
* *
26881126 TTTTTTTCTTTTTTTTTATTTTGATTTTGA
1 TTTTTTTC-TATTTTTTATTTTGACTTTGA
26881156 TTTTTTTC
1 TTTTTTTC
26881164 GCTCTCCTCT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
29 8 0.14
30 42 0.72
31 8 0.14
ACGTcount: A:0.13, C:0.08, G:0.06, T:0.72
Consensus pattern (29 bp):
TTTTTTTCTATTTTTTATTTTGACTTTGA
Found at i:26887802 original size:171 final size:171
Alignment explanation
Indices: 26887597--26887939 Score: 686
Period size: 171 Copynumber: 2.0 Consensus size: 171
26887587 GTAATTAGGA
26887597 TTTAATTTCTATAGAATAAAACATAGCAAGCATGAACAAACTTGACACTTCTTTAGAAAGAATAA
1 TTTAATTTCTATAGAATAAAACATAGCAAGCATGAACAAACTTGACACTTCTTTAGAAAGAATAA
26887662 GACTAAGTGATGTGGTAATGGGAATAAACATGTCTAGGATTGGGTTATTAGGGAAAACTTGGTAT
66 GACTAAGTGATGTGGTAATGGGAATAAACATGTCTAGGATTGGGTTATTAGGGAAAACTTGGTAT
26887727 TTTAGCAGTCTTAATGACTCACCTCTCTTTCTTTACAACCC
131 TTTAGCAGTCTTAATGACTCACCTCTCTTTCTTTACAACCC
26887768 TTTAATTTCTATAGAATAAAACATAGCAAGCATGAACAAACTTGACACTTCTTTAGAAAGAATAA
1 TTTAATTTCTATAGAATAAAACATAGCAAGCATGAACAAACTTGACACTTCTTTAGAAAGAATAA
26887833 GACTAAGTGATGTGGTAATGGGAATAAACATGTCTAGGATTGGGTTATTAGGGAAAACTTGGTAT
66 GACTAAGTGATGTGGTAATGGGAATAAACATGTCTAGGATTGGGTTATTAGGGAAAACTTGGTAT
26887898 TTTAGCAGTCTTAATGACTCACCTCTCTTTCTTTACAACCC
131 TTTAGCAGTCTTAATGACTCACCTCTCTTTCTTTACAACCC
26887939 T
1 T
26887940 ACCTAGTGTT
Statistics
Matches: 172, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
171 172 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (171 bp):
TTTAATTTCTATAGAATAAAACATAGCAAGCATGAACAAACTTGACACTTCTTTAGAAAGAATAA
GACTAAGTGATGTGGTAATGGGAATAAACATGTCTAGGATTGGGTTATTAGGGAAAACTTGGTAT
TTTAGCAGTCTTAATGACTCACCTCTCTTTCTTTACAACCC
Found at i:26889777 original size:15 final size:16
Alignment explanation
Indices: 26889757--26889787 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
26889747 GAAATTGCTC
26889757 AAAAATCAAG-CAAAA
1 AAAAATCAAGTCAAAA
26889772 AAAAATCAAGTCAAAA
1 AAAAATCAAGTCAAAA
26889788 GACACTAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.71, C:0.13, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAAATCAAGTCAAAA
Found at i:26896148 original size:173 final size:173
Alignment explanation
Indices: 26895658--26896176 Score: 968
Period size: 173 Copynumber: 3.0 Consensus size: 173
26895648 TAAAAAGTCC
* * * *
26895658 CTGTGGGTACGATTACTCGACATTTACTTGTCTCTTTATTACTTATTGCGATTGTATACACTTGC
1 CTGTAGGTACGATTACTCGACATTTATTTGTCACTTTATTACTTGTTGCGATTGTATACACTTGC
* *
26895723 ACATTTCCATCGTTCCAAAATTGTAGATGTATTTACTTAATTATAAACATTTAATTCCATCTAGA
66 ACATTTCCATCGTTCCAAAAATGCAGATGTATTTACTTAATTATAAACATTTAATTCCATCTAGA
26895788 GGCCTAAAATATAACTCTTTTCAAGAGTTATCACACCCCCAAA
131 GGCCTAAAATATAACTCTTTTCAAGAGTTATCACACCCCCAAA
*
26895831 CTGTAGGTACGATTACTTGACATTTATTTGT-ACTTTATTACTTGTTGCGATTGTATACACTTGC
1 CTGTAGGTACGATTACTCGACATTTATTTGTCACTTTATTACTTGTTGCGATTGTATACACTTGC
26895895 ACATTTCCATCGTTCCAAAAATGCAGATGTATTTACTTAATTATAAACATTTAATTCCATCTAGA
66 ACATTTCCATCGTTCCAAAAATGCAGATGTATTTACTTAATTATAAACATTTAATTCCATCTAGA
26895960 GGCCTAAAATATAACTCTTTTCAAGAGTTATCACACCCCCAAA
131 GGCCTAAAATATAACTCTTTTCAAGAGTTATCACACCCCCAAA
26896003 CTGTAGGTACGATTACTCGACATTTATTTGTCACTTTATTACTTGTTGCGATTGTATACACTTGC
1 CTGTAGGTACGATTACTCGACATTTATTTGTCACTTTATTACTTGTTGCGATTGTATACACTTGC
26896068 ACATTTCCATCGTTCCAAAAATGCAGATGTATTTACTTAATTATAAACATTTAATTCCATCTAGA
66 ACATTTCCATCGTTCCAAAAATGCAGATGTATTTACTTAATTATAAACATTTAATTCCATCTAGA
26896133 GGCCTAAAATATAACTCTTTTCAAGAGTTATCACACCCCCAAA
131 GGCCTAAAATATAACTCTTTTCAAGAGTTATCACACCCCCAAA
26896176 C
1 C
26896177 CTAAATTATT
Statistics
Matches: 337, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
172 167 0.50
173 170 0.50
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (173 bp):
CTGTAGGTACGATTACTCGACATTTATTTGTCACTTTATTACTTGTTGCGATTGTATACACTTGC
ACATTTCCATCGTTCCAAAAATGCAGATGTATTTACTTAATTATAAACATTTAATTCCATCTAGA
GGCCTAAAATATAACTCTTTTCAAGAGTTATCACACCCCCAAA
Found at i:26910116 original size:27 final size:27
Alignment explanation
Indices: 26910086--26910140 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
26910076 TATTATAAAA
*
26910086 TTAATTAAAATTAAA-TATTTTGATAAT
1 TTAAGTAAAATTAAATTATTTT-ATAAT
*
26910113 TTAAGTATAATTAAATTATTTTATAAT
1 TTAAGTAAAATTAAATTATTTTATAAT
26910140 T
1 T
26910141 ATTTTATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (27 bp):
TTAAGTAAAATTAAATTATTTTATAAT
Done.