Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_517 ID=scaffold_517-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6191
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31


Found at i:50 original size:33 final size:33

Alignment explanation


    Indices: 8--127  Score: 105
    Period size: 33  Copynumber: 3.4  Consensus size: 33

          1 CAAGGGC

                                             
          8 TTGCTAAGTGCTGATTCCCCGAATCATTGGTGG
          1 TTGCTAAGTGCTGATTCCCCGAATCATTGGTGG

                      *    *      *                *  
         41 TTGCTAAGTGTTGATCCCACCGTATCTGAAATGTGAAAGGGG
          1 TTGCTAAGTGCTGATTCC-CCGAATC----AT-TG---GTGG

                        *         *          
         83 TTGCTAAGTGCTAATTCCCCGACTCATTGGTGG
          1 TTGCTAAGTGCTGATTCCCCGAATCATTGGTGG

                        
        116 TTGCTAAGTGCT
          1 TTGCTAAGTGCT

        128 AAATCCACCG


Statistics
Matches: 68,  Mismatches: 10, Indels: 18
        0.71            0.10        0.19

Matches are distributed among these distances:
  33   31  0.46
  34    6  0.09
  36    2  0.03
  37    2  0.03
  38    2  0.03
  39    2  0.03
  41    5  0.07
  42   18  0.26

ACGTcount: A:0.21, C:0.20, G:0.27, T:0.33


Consensus pattern (33 bp):   
TTGCTAAGTGCTGATTCCCCGAATCATTGGTGG
Done.