Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_525 ID=scaffold_525-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8317
ACGTcount: A:0.22, C:0.11, G:0.12, T:0.28

Warning! 2263 characters in sequence are not A, C, G, or T


Found at i:2044 original size:30 final size:29

Alignment explanation


    Indices: 2005--2065  Score: 72
    Period size: 30  Copynumber: 2.1  Consensus size: 29

       1995 ATACATGTAT

                                           
       2005 ATCTTTTTATATGTTCA-TAATT-TTTATTC
          1 ATCTTTTTAT-TGTT-ATTAATTATTTATTC

                               *          
       2034 ATCTTCTTTATTGTTATTATTTATTTATTC
          1 ATCTT-TTTATTGTTATTAATTATTTATTC

              
       2064 AT
          1 AT

       2066 GTGTTCATCA


Statistics
Matches: 28,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  28    1  0.04
  29   13  0.46
  30   14  0.50

ACGTcount: A:0.23, C:0.10, G:0.03, T:0.64


Consensus pattern (29 bp):   
ATCTTTTTATTGTTATTAATTATTTATTC
Done.