Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_532 ID=scaffold_532-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6001
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:37 original size:3 final size:3

Alignment explanation


    Indices: 31--63  Score: 66
    Period size: 3  Copynumber: 11.0  Consensus size: 3

         21 GTTTTTGCAC

                                                       
         31 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT

         64 CATTTTTACC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
TAT

Found at i:5654 original size:18 final size:19

Alignment explanation


    Indices: 5631--5671  Score: 57
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       5621 TGCAGGATTT

                        *      
       5631 TATTTCATT-TTGTATTAC
          1 TATTTCATTCTTATATTAC

                  *            
       5649 TATTTCCTTCTTATATTAC
          1 TATTTCATTCTTATATTAC

                
       5668 TATT
          1 TATT

       5672 ATATATTATC


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  18    8  0.40
  19   12  0.60

ACGTcount: A:0.22, C:0.15, G:0.02, T:0.61


Consensus pattern (19 bp):   
TATTTCATTCTTATATTAC
Done.