Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_533 ID=scaffold_533-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  6100

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39--210
46
3.6
46
75
10
166
30
20
21
27
1.98
28--3857
97
39.5
97
71
10
1258
29
17
23
29
1.97
87--1585
51
30.6
47
69
13
504
29
18
23
28
1.97
28--1598
148
10.7
146
74
8
912
29
18
23
28
1.97
14--1440
393
3.6
392
79
5
1308
29
18
23
28
1.97
304--1596
245
5.3
244
75
8
896
29
18
23
29
1.97
1834--2224
46
8.2
46
75
9
298
28
16
24
29
1.97
2446--3409
143
6.7
141
71
13
484
29
17
23
29
1.97
2475--3093
188
3.2
190
80
8
672
29
17
24
28
1.97
2475--3857
46
28.8
46
73
11
791
29
17
23
29
1.97
2446--6093
97
37.5
97
70
9
906
29
17
22
28
1.96
3968--4055
46
1.9
45
81
2
104
25
20
22
31
1.98
3969--6011
51
41.6
47
68
15
360
30
18
22
29
1.97
3969--6093
148
14.4
147
77
8
943
30
18
22
29
1.97
4160--6100
245
7.9
241
72
11
835
30
17
21
29
1.97

Tables:   1

The End!