Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_539 ID=scaffold_539-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6598
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.29

Warning! 676 characters in sequence are not A, C, G, or T


Found at i:4625 original size:21 final size:20

Alignment explanation


    Indices: 4586--4626  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 20

       4576 TCAATAATTC

                  *     *       
       4586 ATTTCATATAAATCCAAAAT
          1 ATTTCAAATAAAACCAAAAT

                                 
       4606 ATTTCAAATAAAAACCAAAAT
          1 ATTTCAAAT-AAAACCAAAAT

       4627 TCTATAAACC


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  20    8  0.44
  21   10  0.56

ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29


Consensus pattern (20 bp):   
ATTTCAAATAAAACCAAAAT
Done.