Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_541 ID=scaffold_541-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6070
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.30

Warning! 156 characters in sequence are not A, C, G, or T


Found at i:5142 original size:15 final size:14

Alignment explanation


    Indices: 5124--5153  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       5114 AATTCAATAC

                          
       5124 ATATATA-TTAAAT
          1 ATATATATTTAAAT

                          
       5137 ATATATATTTAAAT
          1 ATATATATTTAAAT

               
       5151 ATA
          1 ATA

       5154 ATAAGCTTGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    7  0.44
  14    9  0.56

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (14 bp):   
ATATATATTTAAAT
Done.