Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_55 ID=scaffold_55-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52687
ACGTcount: A:0.12, C:0.07, G:0.09, T:0.11
Warning! 32153 characters in sequence are not A, C, G, or T
Found at i:2975 original size:132 final size:132
Alignment explanation
Indices: 2757--3520 Score: 937
Period size: 132 Copynumber: 5.8 Consensus size: 132
2747 ACAGTCTTGG
* * *
2757 AGCAGATCGAATATGATGAATCTTATCTTCCCAATACACTGCAGAAGCAGATTTAAGCCATTAGT
1 AGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGT
* * * **
2822 CCTATCTCCCTAAGCCA-TAGTGGAGTTGGTTGAAGATTACAGATTCTGTCACCTCAAATAGTAG
66 CCTATCACCCTAAG-CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTCAAGCAGTAG
2886 TGA
130 TGA
* * *
2889 AGCAGATCGAATATGATGATTCTTATGTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGT
1 AGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGT
*
2954 CCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTC-AGCACTAG
66 CCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA-CCTCAAGCAGTAG
*
3018 TGC
130 TGA
* * * * * * * * *
3021 AGCGGATCGAAGATGGTGAATCATATCTTCTCAAGATAGTGAAGAAGCAAATGTAAGCCATTAGT
1 AGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGT
* * * * * * *
3086 CCAATCTCCCTAAGCAGTAGTGGAGTAGCTTGAAGATTGTAGATTTTCTCACC-CTAAGCATTAG
66 CCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTC-AAGCAGTAG
*
3150 TGG
130 TGA
* * *
3153 A-CTAGATCGAAGATGGTGAATCTTATCATCCCAATACAGTAGAGAAGCAGATTTAAGCCATTAG
1 AGC-AGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
* * * ** * *
3217 ACCTATCTCCCTAAGCAGTAGTGTAGTAGGTTGAAGATAACAGATTCTGTCACCTTAAACAGTAG
65 TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTCAAGCAGTAG
3282 T-A
130 TGA
* * * * *
3284 GAGCAGATCGAATATGATGAATCTTATCTTCCCAATACAATGGAGAAGCAAATTTAAGTCATTAT
1 -AGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
* * * *
3349 TCCTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCTATCACC-CTGAGCAGTA
65 TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTC-AAGCAGTA
*
3413 GTGG
129 GTGA
* **
3417 AGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAAA
1 AGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGT
* *
3482 CCTATCACCCTAAGCAGTAGTGGAGTACGTTGAGGATTG
66 CCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
3521 AAGNNNNNNN
Statistics
Matches: 537, Mismatches: 85, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
130 1 0.00
131 5 0.01
132 526 0.98
133 5 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (132 bp):
AGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGT
CCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTCAAGCAGTAGT
GA
Found at i:3476 original size:396 final size:396
Alignment explanation
Indices: 2760--3508 Score: 1144
Period size: 396 Copynumber: 1.9 Consensus size: 396
2750 GTCTTGGAGC
* * *
2760 AGATCGAATATGATGAATCTTATCTTCCCAATACACTGCAGAAGCAGATTTAAGCCATTAGTCCT
1 AGATCGAAGATGATGAATCTTATCATCCCAATACACTGCAGAAGCAGATTTAAGCCATTAGACCT
* * *
2825 ATCTCCCTAAGCCATAGTGGAGTTGGTTGAAGATTACAGATTCTGTCACCTCAAATAGTAGTGAA
66 ATCTCCCTAAGCCATAGTGGAGTAGGTTGAAGATAACAGATTCTGTCACCTCAAACAGTAGTGAA
* * * *
2890 GCAGATCGAATATGATGATTCTTATGTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC
131 GCAGATCGAATATGATGAATCTTATCTTCCCAATACAATGGAGAAGCAAATTTAAGCCATTAGTC
* * *
2955 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTCAGCACTAGTG
196 CTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCTATCACCCTCAGCACTAGTG
* * * *
3020 CAGCGGATCGAAGATGGTGAATCATATCTTCTCAAGATAGTGAAGAAGCAAATGTAAGCCATTAG
261 CAGCAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTGAAGAAGCAAATGTAAGCCATTAA
* *
3085 TCCAATCTCCCTAAGCAGTAGTGGAGTAGCTTGAAGATTGTAGATTTTCTCACCCTAAGCATTAG
326 ACCAATCACCCTAAGCAGTAGTGGAGTAGCTTGAAGATTGTAGATTTTCTCACCCTAAGCATTAG
3150 TGGACT
391 TGGACT
* *
3156 AGATCGAAGATGGTGAATCTTATCATCCCAATACAGTAG-AGAAGCAGATTTAAGCCATTAGACC
1 AGATCGAAGATGATGAATCTTATCATCCCAATACACT-GCAGAAGCAGATTTAAGCCATTAGACC
* *
3220 TATCTCCCTAAG-CAGTAGTGTAGTAGGTTGAAGATAACAGATTCTGTCACCTTAAACAGTAGT-
65 TATCTCCCTAAGCCA-TAGTGGAGTAGGTTGAAGATAACAGATTCTGTCACCTCAAACAGTAGTG
*
3283 AGAGCAGATCGAATATGATGAATCTTATCTTCCCAATACAATGGAGAAGCAAATTTAAGTCATTA
129 A-AGCAGATCGAATATGATGAATCTTATCTTCCCAATACAATGGAGAAGCAAATTTAAGCCATTA
* * *
3348 TTCCTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCTATCACCCTGAGCAGTA
193 GTCCTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCTATCACCCTCAGCACTA
* * * * * *
3413 GTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCAT
258 GTGCAGCAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTGAAGAAGCAAATGTAAGCCAT
*
3478 TAAACCTATCACCCTAAGCAGTAGTGGAGTA
323 TAAACCAATCACCCTAAGCAGTAGTGGAGTA
3509 CGTTGAGGAT
Statistics
Matches: 316, Mismatches: 34, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
395 3 0.01
396 312 0.99
397 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (396 bp):
AGATCGAAGATGATGAATCTTATCATCCCAATACACTGCAGAAGCAGATTTAAGCCATTAGACCT
ATCTCCCTAAGCCATAGTGGAGTAGGTTGAAGATAACAGATTCTGTCACCTCAAACAGTAGTGAA
GCAGATCGAATATGATGAATCTTATCTTCCCAATACAATGGAGAAGCAAATTTAAGCCATTAGTC
CTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCTATCACCCTCAGCACTAGTG
CAGCAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTGAAGAAGCAAATGTAAGCCATTAA
ACCAATCACCCTAAGCAGTAGTGGAGTAGCTTGAAGATTGTAGATTTTCTCACCCTAAGCATTAG
TGGACT
Found at i:4649 original size:132 final size:132
Alignment explanation
Indices: 4398--5422 Score: 1429
Period size: 132 Copynumber: 7.8 Consensus size: 132
4388 NNNNNNNNNT
**
4398 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTAAGTCACCCTAAG
1 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
* * * * ** * ** *
4463 CAGTAGTGCAGCGGATCAAAGATGGTGAATCATATCTTTTCAAGATTGTGGAGAAGCAGATGTAA
66 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
4528 GC
131 GC
* * * * *
4530 CATTAGTCCAATCTCCCTATGCAGTAGTGGAGTAGCTTGAAGATTGTAGATTCTGTCACCCTAAG
1 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
* * * *
4595 CAGTAGTAGAGTAGATCGAAGATGGTGAATCTTATCATCCCAATACAGTAGAGAAGCAGATTTAA
66 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
4660 GC
131 GC
* * * ** * *
4662 CATTAGACCTATCTCCCTAAGCAGTAGTGTAGTAGGTTGAAGATAACAGATTCTGTCACCTTAAA
1 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
* * * * *
4727 TAGTAGTGGAGCAGATCGAATATGATGAATCTTATCTTCCCAATACAATGGAGAAGCAAATTTAA
66 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
4792 GC
131 GC
* * *
4794 CATTATTCCTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
1 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
4859 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
66 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
4924 GC
131 GC
** * * * * *
4926 CATTAAACCTATCACCCTAAGCAGTAGTGGAGTACGTTGAGGATTGAAGATTCTATCAACCTAAG
1 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
* * *
4991 TAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
66 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
5056 GC
131 GC
* *
5058 CATTAGTCCAATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAG
1 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
5123 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
66 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
*
5188 GT
131 GC
** *
5190 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTAAGTCACCCTAGG
1 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
* * * * ** * ** *
5255 CAGTAGTGCAGCGGATCAAAGATGGTGAATCATATCTTTTCAAGATTGTGGAGAAGCAGATGTAA
66 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
5320 GC
131 GC
* * * * *
5322 CATTAGTCCAATCTCCCTATGCAGTAGTGGAGTAGCTTGAAGATTGTAGATTCTGTCACCCTAAG
1 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
* *
5387 CAGTAGTAGAGTAGATCGAAGATGGTGAATCTTATC
66 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC
5423 NNNNNNNNNN
Statistics
Matches: 783, Mismatches: 110, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 783 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (132 bp):
CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
GC
Found at i:5136 original size:396 final size:396
Alignment explanation
Indices: 4398--5422 Score: 1638
Period size: 396 Copynumber: 2.6 Consensus size: 396
4388 NNNNNNNNNT
4398 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTAAGTCACCCTAAG
1 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTAAGTCACCCTAAG
4463 CAGTAGTGCAGCGGATCAAAGATGGTGAATCATATCTTTTCAAGATTGTGGAGAAGCAGATGTAA
66 CAGTAGTGCAGCGGATCAAAGATGGTGAATCATATCTTTTCAAGATTGTGGAGAAGCAGATGTAA
4528 GCCATTAGTCCAATCTCCCTATGCAGTAGTGGAGTAGCTTGAAGATTGTAGATTCTGTCACCCTA
131 GCCATTAGTCCAATCTCCCTATGCAGTAGTGGAGTAGCTTGAAGATTGTAGATTCTGTCACCCTA
4593 AGCAGTAGTAGAGTAGATCGAAGATGGTGAATCTTATCATCCCAATACAGTAGAGAAGCAGATTT
196 AGCAGTAGTAGAGTAGATCGAAGATGGTGAATCTTATCATCCCAATACAGTAGAGAAGCAGATTT
* * *
4658 AAGCCATTAGACCTATCTCCCTAAGCAGTAGTGTAGTAGGTTGAAGATAACAGATTCTGTCACCT
261 AAGCCATTAGACCAATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAACAGATTCTGTCACCT
* *
4723 TAAATAGTAGTGGAGCAGATCGAATATGATGAATCTTATCTTCCCAATACAATGGAGAAGCAAAT
326 TAAACAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAATGGAGAAGCAAAT
4788 TTAAGC
391 TTAAGC
* * * **
4794 CATTATTCCTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
1 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTAAGTCACCCTAAG
* * * * ** * ** *
4859 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
66 CAGTAGTGCAGCGGATCAAAGATGGTGAATCATATCTTTTCAAGATTGTGGAGAAGCAGATGTAA
** * * * * * * *
4924 GCCATTAAACCTATCACCCTAAGCAGTAGTGGAGTA-CGTTGAGGATTGAAGATTCTATCAACCT
131 GCCATTAGTCCAATCTCCCTATGCAGTAGTGGAGTAGC-TTGAAGATTGTAGATTCTGTCACCCT
* * * * * *
4988 AAGTAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATT
195 AAGCAGTAGTAGAGTAGATCGAAGATGGTGAATCTTATCATCCCAATACAGTAGAGAAGCAGATT
* **
5053 TAAGCCATTAGTCCAATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACC
260 TAAGCCATTAGACCAATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAACAGATTCTGTCACC
* * * *
5118 TTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
325 TTAAACAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAATGGAGAAGCAAA
*
5183 TTTAAGT
390 TTTAAGC
*
5190 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTAAGTCACCCTAGG
1 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTAAGTCACCCTAAG
5255 CAGTAGTGCAGCGGATCAAAGATGGTGAATCATATCTTTTCAAGATTGTGGAGAAGCAGATGTAA
66 CAGTAGTGCAGCGGATCAAAGATGGTGAATCATATCTTTTCAAGATTGTGGAGAAGCAGATGTAA
5320 GCCATTAGTCCAATCTCCCTATGCAGTAGTGGAGTAGCTTGAAGATTGTAGATTCTGTCACCCTA
131 GCCATTAGTCCAATCTCCCTATGCAGTAGTGGAGTAGCTTGAAGATTGTAGATTCTGTCACCCTA
5385 AGCAGTAGTAGAGTAGATCGAAGATGGTGAATCTTATC
196 AGCAGTAGTAGAGTAGATCGAAGATGGTGAATCTTATC
5423 NNNNNNNNNN
Statistics
Matches: 555, Mismatches: 72, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
395 1 0.00
396 553 1.00
397 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (396 bp):
CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTAAGTCACCCTAAG
CAGTAGTGCAGCGGATCAAAGATGGTGAATCATATCTTTTCAAGATTGTGGAGAAGCAGATGTAA
GCCATTAGTCCAATCTCCCTATGCAGTAGTGGAGTAGCTTGAAGATTGTAGATTCTGTCACCCTA
AGCAGTAGTAGAGTAGATCGAAGATGGTGAATCTTATCATCCCAATACAGTAGAGAAGCAGATTT
AAGCCATTAGACCAATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAACAGATTCTGTCACCT
TAAACAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAATGGAGAAGCAAAT
TTAAGC
Found at i:8158 original size:132 final size:132
Alignment explanation
Indices: 7818--9301 Score: 2057
Period size: 132 Copynumber: 11.2 Consensus size: 132
7808 NNNNNNNNNN
* * * *
7818 CTGTCA-CCTAAAGGAGTAGTGGATCGAGATCGAAGATGATGAATCTTATCTTCCCACTACAGTA
1 CTGTCACCCT-AAGCAGTAGTGGAGC-AGATCGAAGATGGTGAATCTTATCTTCCCAATACAGT-
* * * ** *
7882 GGAGAAGCAGATATAAGCCATTACT-CTATCATCCTAAGCAGTAGTGGAGTCTGATGAAGA-TGC
63 GGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
7945 AGATT
128 AGATT
* * * * * *
7950 CTGTCACCTTAACCAGTAGT-AATGCAGATCGAAGAT-GTGAATATTATCTTCGCAATACACTGG
1 CTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGG
* *
8013 AGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAGGATTGCAG
65 AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
8078 ATT
130 ATT
* * *
8081 GTGTCACCTTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
1 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
* * * *
8146 GAAGCAGATTTAAGCCTTTAGTCCTGTCACCCTAAACAGTAGTGGAGTAGGTTGAAGATTACAGA
66 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
8211 TT
131 TT
* * *
8213 CTGTCACCCTAAAG-AGTAGTGGAGCAGATCGAATATGATAAATCTTATCTTCCCAATACAGTGG
1 CTGTCACCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGG
* * * *
8277 AGAAACAGATTTAAGCCATTAGTCC-ATTCACCTTAAGCAGTACTGGAGTAGGTCGAAGATTGCA
65 AGAAGCAGATTTAAGCCATTAGTCCTA-TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
8341 GATT
129 GATT
* * *
8345 CTGTCACCCTAAACAGTAGTGGAGCAGATCGAATATGATGAATCTTATCTTCCCAATACAGTGGA
1 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
* *
8410 GAAGCAGATTTAAGCCATTAGTCC-ATTCACCTTAAGCAGTACTGGAGTAGGTTGAAGATTGCAG
66 GAAGCAGATTTAAGCCATTAGTCCTA-TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
8474 ATT
130 ATT
* *
8477 CTGTCACCCTAAGGAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
1 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
* *
8542 GAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGA
66 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
8607 TT
131 TT
* * * * *
8609 CTGTCACCTTAACCAGTAGTGAAGCTGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTGGA
1 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
*
8674 GAAGCAGATTTAAGCCATTAGTCCTATCATCCCTAAGCAGTAGTGGAGTAGGTTTGAAGAATGCA
66 GAAGCAGATTTAAGCCATTAGTCCTATCA-CCCTAAGCAGTAGTGGAGTAGG-TTGAAGATTGCA
8739 GATT
129 GATT
*
8743 CTGTTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTGG
1 CTG-TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGG
* * * * *
8808 AGAAGTAGATTTAATCCATTTAGTCCTATCACCCTAAGCAGTGGTGGAGCAGTTTGAAGATTGCA
65 AGAAGCAGATTTAAGCCA-TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
8873 GATT
129 GATT
* * * * * *
8877 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATGTTCCCAGTACACTTGA
1 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
*
8942 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGA
66 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
9007 TT
131 TT
* * * *
9009 CTGTTACCCTAAGCAGTAGTGGGGTAGATCGAAGATGGTGAATCTTACCTTCCCAATACAGTGGA
1 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
* ** * * * *
9074 GGAGCAGATTTAAGCCATTAGTCCTATCACCCTAAAAAGAAGTGGAGTCGGTTAAAGATTCCAGA
66 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
9139 TT
131 TT
* *
9141 CTGTCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGAATCATATCTTCCCAATACAGTGGA
1 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
** * * * *
9206 GAAGCAGATTTAAGCCATTACACCTATCACCCTAAGTAGTAGTGGAGTACGTTGAGGATTGAAGA
66 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
9271 TT
131 TT
* * * * *
9273 CTATCAACCTAAGTAATAGTGGAGGAGAT
1 CTGTCACCCTAAGCAGTAGTGGAGCAGAT
9302 NNNNNNNNNN
Statistics
Matches: 1213, Mismatches: 125, Indels: 28
0.89 0.09 0.02
Matches are distributed among these distances:
129 23 0.02
130 51 0.04
131 52 0.04
132 851 0.70
133 97 0.08
134 35 0.03
135 92 0.08
136 12 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
TT
Found at i:10117 original size:132 final size:132
Alignment explanation
Indices: 9888--10183 Score: 432
Period size: 132 Copynumber: 2.2 Consensus size: 132
9878 NNCCATTATT
* * * * * * *
9888 CCTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGT
1 CCTATCACCCTAAGCAGTAGTGGAGTACGTTGAAGATTGAAGATTCTATCAACCTAAGCAATAGT
*
9953 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTA
66 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAACCATTA
10018 AA
131 AA
* *
10020 CCTATCACCCTAAGCAGTAGTGGAGTACGTTGAGGATTGAAGATTCTATCAACCTAAGTAATAGT
1 CCTATCACCCTAAGCAGTAGTGGAGTACGTTGAAGATTGAAGATTCTATCAACCTAAGCAATAGT
* *
10085 GGAGGAGATTGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAACCATTA
66 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAACCATTA
**
10150 GT
131 AA
* *
10152 CCTATCTCCCTAAGCCA-TAGTGGAGTTCGTTG
1 CCTATCACCCTAAG-CAGTAGTGGAGTACGTTG
10184 GANNNNNNNN
Statistics
Matches: 147, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
132 145 0.99
133 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (132 bp):
CCTATCACCCTAAGCAGTAGTGGAGTACGTTGAAGATTGAAGATTCTATCAACCTAAGCAATAGT
GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAACCATTA
AA
Found at i:12088 original size:132 final size:131
Alignment explanation
Indices: 11851--12257 Score: 589
Period size: 132 Copynumber: 3.1 Consensus size: 131
11841 NNNNNNNNNN
*
11851 ATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAGGTCGAAGTTTGCAGATTCTGTCACCCTAAGC
1 ATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAGGT-GAAGATTGCAGATTCTGTCACCCTAAGC
* ** * *
11916 AATAGTAAAGAAGATCGAAGATGGTGAATGTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
65 AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
11981 CC
130 CC
* * * * *
11983 ATTAGTCCAATCGCCCTCAGCAGTAGTGGAGTAGGCTGAAGATTGCAAATTCTGTCACCCTAAGC
1 ATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAGG-TGAAGATTGCAGATTCTGTCACCCTAAGC
* *
12048 AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGATTTAAT
65 AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
12113 CC
130 CC
* * *
12115 ATTAGTCCTATCACCCTAAGTAGTGGTGGAGTAGGTTGAAGATTGCTGATTCTGTCACCCTAAGC
1 ATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAGG-TGAAGATTGCAGATTCTGTCACCCTAAGC
* * * * * *
12180 AGTAGTGGAGCAGATCAAAGATTGTGAATCTTATGTTCCCAGTACACTTGAGAAGCAGATTTAAG
65 AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
12245 CC
130 CC
12247 ATTAGTCCTAT
1 ATTAGTCCTAT
12258 NNNNNNNNNN
Statistics
Matches: 245, Mismatches: 29, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
132 244 1.00
133 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (131 bp):
ATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAGGTGAAGATTGCAGATTCTGTCACCCTAAGCA
GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
C
Found at i:13081 original size:132 final size:132
Alignment explanation
Indices: 12830--13750 Score: 1152
Period size: 132 Copynumber: 7.0 Consensus size: 132
12820 NNNNNNNNNN
*
12830 ACCTGAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
1 ACCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
** * * * *
12895 GATTTAAGCCATTAAACCTATCACCCTAAGCAGTCGTGGAGTACGTTGAGGATTGAAGATTTTAT
66 GATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAAGATTCTAT
12960 CA
131 CA
* * * * * **
12962 ACCTAAGTAATACTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAATTA
1 ACCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
* * * *
13027 GATTTAAGCCATTAGTCCTACCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGT
66 GATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAAGATTCTAT
13092 C-
131 CA
* *
13093 ACCTTAAGCAGTAGTGGAGCAGATCGAAGATCGTGAATCTTATCTTCCCAAAACAGTGGAGAAGC
1 ACC-TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGC
* * * *
13158 AGATTTAAGTCATTAGTCCTATCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATT-AA
65 AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAAGATTCTA
13222 GTCA
130 -TCA
* * * * ** * **
13226 CCCTAAGCAGTAGTGCAGCGGATC-AATGATGGTGAATCATATCTTTTCAAGATTGTGGAGAAGC
1 ACCTAAGCAGTAGTGGAGCAGATCGAA-GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGC
* * * * *
13290 AGATGTAAGCCATTAGTCCAATCTCCCTATGCAGTAGTGGAGTAGCTTGAAGATTGCAA-ATTCT
65 AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AAGATTCT
*
13354 GTCA
129 ATCA
* * * *
13358 CCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCATCCCAATACAGTAGAGAAGCA
1 ACCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
* * * * *
13423 GATTTAAGCCATTAGACCTATCTCCCTAAGCAGTAGTGTAGTAGGTTGAAGA-TAACAGATTCTG
66 GATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGA-AGATTCTA
13487 TC-
130 TCA
* * * * *
13489 ACCTTAAACAGTAGTAGAGCAGATCGAATATGATGAATCTTATCTTCCCAATACAATGGAGAAGC
1 ACC-TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGC
* * * * * *
13554 AAATTTAAGTCATTATTCCTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCTA
65 AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAAGATTCTA
13619 TCA
130 TCA
* *
13622 CCCTGAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
1 ACCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
** * *
13687 GATTTAAGCCATTAAACCTATCACCCTTAAGCAGTAGTGGAGTACGTTGAGGATTGAAGATTCT
66 GATTTAAGCCATTAGTCCTATCACCC-TAAGCAGTAGTGGAGTAGGTTGAAGATTGAAGATTCT
13751 NNNNNNNNNN
Statistics
Matches: 672, Mismatches: 104, Indels: 25
0.84 0.13 0.03
Matches are distributed among these distances:
130 1 0.00
131 9 0.01
132 622 0.93
133 40 0.06
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
ACCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
GATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAAGATTCTAT
CA
Found at i:13567 original size:396 final size:396
Alignment explanation
Indices: 12835--13750 Score: 1320
Period size: 396 Copynumber: 2.3 Consensus size: 396
12825 NNNNNACCTG
12835 AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTT
1 AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTT
* * *
12900 AAGCCATTAAACCTATCACCCTAAGCAGTCGTGGAGTACGTTGAGGATTGAAGATTTTATCAACC
66 AAGCCATTAAACCTATCACCCTAAGCAGTAGTGGAGTACGTTGAAGATTGAAGATTCTATCAACC
* * * **
12965 TAAGTAATACTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAATTAGAT
131 TAAGCAATACTGGAGGAGATCGAAGATGGTGAATCTTATCATCCCAACACAGTAGAGAAGCAGAT
* * **
13030 TTAAGCCATTAGTCCTACCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
196 TTAAGCCATTAGACCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAACAGATTCTGTCAC
* * * *
13095 CTTAAGCAGTAGTGGAGCAGATCGAAGATCGTGAATCTTATCTTCCCAAAACAGTGGAGAAGCAG
261 CTTAAACAGTAGTAGAGCAGATCGAAGATCGTGAATCTTATCTTCCCAAAACAATGGAGAAGCAA
* *
13160 ATTTAAGTCATTAGTCCTATCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATT-AAGT
326 ATTTAAGTCATTAGTCCTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCAA-T
13224 CACCCTA
390 CACCCTA
* * * ** * ** *
13231 AGCAGTAGTGCAGCGGATC-AATGATGGTGAATCATATCTTTTCAAGATTGTGGAGAAGCAGATG
1 AGCAGTAGTGGAGCAGATCGAA-GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATT
** * * * *
13295 TAAGCCATTAGTCCAATCTCCCTATGCAGTAGTGGAGTA-GCTTGAAGATTGCAA-ATTCTGTCA
65 TAAGCCATTAAACCTATCACCCTAAGCAGTAGTGGAGTACG-TTGAAGATTG-AAGATTCTATCA
* * * * *
13358 CCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCATCCCAATACAGTAGAGAAGCA
128 ACCTAAGCAATACTGGAGGAGATCGAAGATGGTGAATCTTATCATCCCAACACAGTAGAGAAGCA
* * *
13423 GATTTAAGCCATTAGACCTATCTCCCTAAGCAGTAGTGTAGTAGGTTGAAGATAACAGATTCTGT
193 GATTTAAGCCATTAGACCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAACAGATTCTGT
* *
13488 CACCTTAAACAGTAGTAGAGCAGATCGAATAT-GATGAATCTTATCTTCCCAATACAATGGAGAA
258 CACCTTAAACAGTAGTAGAGCAGATCGAAGATCG-TGAATCTTATCTTCCCAAAACAATGGAGAA
*
13552 GCAAATTTAAGTCATTATTCCTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTC
322 GCAAATTTAAGTCATTAGTCCTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTC
* *
13617 TATCACCCTG
387 AATCACCCTA
13627 AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTT
1 AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTT
*
13692 AAGCCATTAAACCTATCACCCTTAAGCAGTAGTGGAGTACGTTGAGGATTGAAGATTCT
66 AAGCCATTAAACCTATCACCC-TAAGCAGTAGTGGAGTACGTTGAAGATTGAAGATTCT
13751 NNNNNNNNNN
Statistics
Matches: 450, Mismatches: 61, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
395 4 0.01
396 410 0.91
397 35 0.08
398 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (396 bp):
AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTT
AAGCCATTAAACCTATCACCCTAAGCAGTAGTGGAGTACGTTGAAGATTGAAGATTCTATCAACC
TAAGCAATACTGGAGGAGATCGAAGATGGTGAATCTTATCATCCCAACACAGTAGAGAAGCAGAT
TTAAGCCATTAGACCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAACAGATTCTGTCAC
CTTAAACAGTAGTAGAGCAGATCGAAGATCGTGAATCTTATCTTCCCAAAACAATGGAGAAGCAA
ATTTAAGTCATTAGTCCTATCACCCTAAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCAATC
ACCCTA
Found at i:14426 original size:132 final size:132
Alignment explanation
Indices: 14185--14640 Score: 585
Period size: 132 Copynumber: 3.5 Consensus size: 132
14175 NNNNNNNNNN
* * *
14185 AATCTTATCATCCCAATAC-AGGAGAGAAGCAGATTTAAGCCATTATACCTATCTCCCTAAGCAG
1 AATCTTATCTTCCCAATACAATG-GAGAAGCAGATTTAAGCCATTATACCTATCACCCTAAGCAG
* * * * * *
14249 TAGTGTAGTAGGTTGAAGA-TAACAGATTTTGTCACCTTAAACAGTAGTGGAGCAGATCGAATAT
65 TAGTGGAGTAGGTTGAAGATTGA-AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
*
14313 GATG
129 GGTG
* * *
14317 AATCTTATCTTCCCAATACAATGGAGAAGCAAATTTAAGCCATTATTCCTATCACCCTAAGAAGT
1 AATCTTATCTTCCCAATACAATGGAGAAGCAGATTTAAGCCATTATACCTATCACCCTAAGCAGT
* * * *
14382 ACTGGAGTAGGTTGAAGATTGTAGATTCTGTCACCCTGAGCAGTAATGGAGCAGATCGAAGATGG
66 AGTGGAGTAGGTTGAAGATTGAAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGG
14447 TG
131 TG
* * * *
14449 AATCTTATCTTCCTAATACAGTGGAGAAGCAGATTTAAGCCATTAAACCTATCACCCTAAGCACT
1 AATCTTATCTTCCCAATACAATGGAGAAGCAGATTTAAGCCATTATACCTATCACCCTAAGCAGT
* * * * * * * *
14514 AGTGGAGTACGTTGAGGATTGAAGATTCTATCAACCTAAGTAATAGTGGAGGAGATCCAAGATGG
66 AGTGGAGTAGGTTGAAGATTGAAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGG
14579 TG
131 TG
* *
14581 AATCTTATCTTCCCAATACAGTGGAGAAGCATATTTAAGCCATTAGT-CCTATCACCCTAA
1 AATCTTATCTTCCCAATACAATGGAGAAGCAGATTTAAGCCATTA-TACCTATCACCCTAA
14641 NNNNNNNNNN
Statistics
Matches: 282, Mismatches: 39, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
132 279 0.99
133 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (132 bp):
AATCTTATCTTCCCAATACAATGGAGAAGCAGATTTAAGCCATTATACCTATCACCCTAAGCAGT
AGTGGAGTAGGTTGAAGATTGAAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGG
TG
Found at i:15560 original size:132 final size:132
Alignment explanation
Indices: 15323--15894 Score: 777
Period size: 132 Copynumber: 4.3 Consensus size: 132
15313 NNNNNNNGAG
* * * * * * *
15323 GATTGAAGATTCTATCAACCTAAGTAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCC
1 GATTGCAGATTCTGTCACCCTAAGCAGTAGTAGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
15388 AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTG
66 AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTG
15453 AA
131 AA
** * *
15455 GATTGCAGATTCTGTCACATTAAGCAGTAGTAGAGCAGATCGAAGATCGTGAAGCTTATCTTCCC
1 GATTGCAGATTCTGTCACCCTAAGCAGTAGTAGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
* *
15520 AATACAGTGGAGAAGAAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTG
66 AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTG
15585 AA
131 AA
** * * * **
15587 GATTGCAGATTAAGTCACCCTAAGCAGTAGT-GCAGCGGATCAAAGATGGTGAATCATATCTTTT
1 GATTGCAGATTCTGTCACCCTAAGCAGTAGTAG-AGCAGATCGAAGATGGTGAATCTTATCTTCC
* ** * * * * *
15651 CAAGATTGTGGAGAAGCAGATGTAAGCCATTAGTCCAATCTCCCTATGCAGTAGTGGAGTAGCTT
65 CAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTT
15716 GAA
130 GAA
* *
15719 GATTGCAGATTCTGTCACCCTAAGCAGTAGTAGAGTAGATCGAAGATGGTGAATCTTATCATCCC
1 GATTGCAGATTCTGTCACCCTAAGCAGTAGTAGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
* * * *
15784 AATACAGTAGAGAAGCAGATTTAAGCCATTAGACCTATCTCCCTAAGCAGTAGTGTAGTAGGTTG
66 AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTG
15849 AA
131 AA
** * * *
15851 GATAACAGATTCTGTCACCTTAAACAGTAGTGGAGCAGATCGAA
1 GATTGCAGATTCTGTCACCCTAAGCAGTAGTAGAGCAGATCGAA
15895 TNNNNNNNNN
Statistics
Matches: 379, Mismatches: 59, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
131 1 0.00
132 377 0.99
133 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (132 bp):
GATTGCAGATTCTGTCACCCTAAGCAGTAGTAGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTG
AA
Found at i:31907 original size:132 final size:132
Alignment explanation
Indices: 31654--31984 Score: 527
Period size: 132 Copynumber: 2.5 Consensus size: 132
31644 NNNNNNNNNN
* * * *
31654 GTCCAATCGCCCTCAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATTCTGTCACCCTAAGCAGTA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTA
* * * *
31719 GTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGATTTAATCCAT
66 GTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACACTGGAGAAGCAGATTTAAGCCAT
31784 TA
131 TA
*
31786 GTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTA
* * * *
31851 GTGAAGCAGATCGAAGATTGTGAATCTTATGTTCCCAGTACACTTGAGAAGCAGATTTAAGCCAT
66 GTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACACTGGAGAAGCAGATTTAAGCCAT
31916 TA
131 TA
* *
31918 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTTACCCTAAGCAGTA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTA
31983 GT
66 GT
31985 NNNNNNNNNN
Statistics
Matches: 183, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 183 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTA
GTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACACTGGAGAAGCAGATTTAAGCCAT
TA
Found at i:35660 original size:44 final size:44
Alignment explanation
Indices: 35601--35709 Score: 164
Period size: 44 Copynumber: 2.5 Consensus size: 44
35591 ATTAGTCCTA
* * *
35601 TCACTCTAAGAAGTAGTGGAGTAGGTTAAAGATTACATATTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTACAGATTCTG
* *
35645 TCACCCTAAGCAGTAGTAGAGTAGGTTGAAGATTACAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTACAGATTCTG
*
35689 TCACCCTAAACAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
35710 CAGATCGAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.28
Consensus pattern (44 bp):
TCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTACAGATTCTG
Found at i:35676 original size:132 final size:132
Alignment explanation
Indices: 35295--35677 Score: 541
Period size: 132 Copynumber: 2.9 Consensus size: 132
35285 NNNNNNNATG
* * * *
35295 TTCCCAGTACACTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTA
1 TTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTA
* * * * * * *
35360 GGTTGAACATTGCAGATTCTGTTACCCTAAGCAGAATTGGGGTAGATCGAAGATAGTGAATCTTA
66 GGTTAAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATAGTGAATCTTA
35425 CC
131 CC
* * *
35427 TTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAAAAGAAGTGGAGTC
1 TTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTA
* * * *
35492 GGTTAAAGATTCCAGATTCTGTCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGAATCTTA
66 GGTTAAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATAGTGAATCTTA
*
35557 TC
131 CC
* *
35559 TTCCCTATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACTCTAAGAAGTAGTGGAGTA
1 TTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTA
* * * *
35624 GGTTAAAGATTACATATTCTGTCACCCTAAGCAGTAGTAGAGTAGGTTGAAGAT
66 GGTTAAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGAT
35678 TACAGATTCT
Statistics
Matches: 221, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 221 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
TTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTA
GGTTAAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATAGTGAATCTTA
CC
Found at i:35692 original size:176 final size:174
Alignment explanation
Indices: 35469--35820 Score: 454
Period size: 176 Copynumber: 2.0 Consensus size: 174
35459 ATTAGTCCTA
* * * **
35469 TCACCCTAAAAAGAAGTGGAGTCGGTTAAAGATTCCAGATTCTGTCACCCTAAGTAGTAGTGGAG
1 TCACCCTAAAAAGAAGTAGAGTAGGTTAAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAG
* * * * *
35534 CAGATCGAAGATGGTGAATCTTATCTTCCCTATACAGTGGAGAAGCAGATTTAAGCCAT-TAGTC
66 CAGATCGAAGACGATGAATCTTATCGT-CCAATACAGTGGAGAAACAGATTTAAGCCATAT-GTC
* * * *
35598 CTATCACTCTAAGAAGTAGTGGAGTAGGTTAAAGATTACATATTCTG
129 CAATCACCCTAAGAAGTAATGGAGT-GGTTAAAGATTACAGATTCTG
** * *
35645 TCACCCTAAGCAGTAGTAGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAG
1 TCACCCTAAAAAGAAGTAGAGTAGGTTAAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAG
*
35710 CAGATCGAATACGATGAATCTTATCGTCCAATACAGTGGAGAAACAGATTTAAGCCATATGTCCA
66 CAGATCGAAGACGATGAATCTTATCGTCCAATACAGTGGAGAAACAGATTTAAGCCATATGTCCA
* * * * *
35775 ATCTCCCTAAGCAGTAATGGAGTTGTTGAAGATTGCAGATTCTG
131 ATCACCCTAAGAAGTAATGGAGTGGTTAAAGATTACAGATTCTG
35819 TC
1 TC
35821 CATTAACCAG
Statistics
Matches: 151, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
174 19 0.13
175 52 0.34
176 80 0.53
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (174 bp):
TCACCCTAAAAAGAAGTAGAGTAGGTTAAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAG
CAGATCGAAGACGATGAATCTTATCGTCCAATACAGTGGAGAAACAGATTTAAGCCATATGTCCA
ATCACCCTAAGAAGTAATGGAGTGGTTAAAGATTACAGATTCTG
Found at i:35841 original size:129 final size:132
Alignment explanation
Indices: 35648--35894 Score: 356
Period size: 130 Copynumber: 1.9 Consensus size: 132
35638 TATTCTGTCA
* * *
35648 CCCTAAGCAGTAGTAGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGCAG
1 CCCTAAGCAGTAATAGAGTAGGTTGAAGATTACAGATTCTGTCACACTAAACAGTAGTGAAGCAG
*
35713 ATCGAATACGATGAATCTTATCGT-CCAATACAGTGGAGAAACAGATTTAAGCCATATGTCCAAT
66 ATCGAAGACGATGAATCTTATCGTCCCAATACAGTGGAGAAACAGATTTAAGCCATATGTCCAAT
35777 CT
131 CT
* * * * *
35779 CCCTAAGCAGTAATGGAGT-TGTTGAAGATTGCAGATTCTGTC-CATTAACCAGTAGTGAAGCAG
1 CCCTAAGCAGTAATAGAGTAGGTTGAAGATTACAGATTCTGTCACACTAAACAGTAGTGAAGCAG
* * * *
35842 ATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
66 ATCGAAGACGATGAATCTTATCGTCCCAATACAGTGGAGAAACAGATTTAAGC
35895 NNNNNNNNNN
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
129 37 0.36
130 48 0.47
131 17 0.17
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (132 bp):
CCCTAAGCAGTAATAGAGTAGGTTGAAGATTACAGATTCTGTCACACTAAACAGTAGTGAAGCAG
ATCGAAGACGATGAATCTTATCGTCCCAATACAGTGGAGAAACAGATTTAAGCCATATGTCCAAT
CT
Found at i:37198 original size:132 final size:132
Alignment explanation
Indices: 36622--38726 Score: 2871
Period size: 132 Copynumber: 15.9 Consensus size: 132
36612 NNNNNNNNNN
* * *
36622 GTAGTGGAGCAGATCGAAGCTGGTTAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
36687 CATTAGTCCTATCACCGTAAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
36752 CA
131 CA
36754 GTAGTGGAGCAGATCGAAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
1 GTAGT-G-G-AG--C--AGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
* * *
36819 TTTAAACCATTAGTCCTATCACCCTAAGCCAGTAGTGGAGTAGGTTGAAGATTACAGGTTCTGTC
59 TTTAAGCCATTAGTCCTATCACCCTAAG-CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTC
**
36884 ACCCTAAAGA
123 ACCCTAATCA
* * * * * * *
36894 GTAGAGAAGCAAATCGAATATGATGAATCTGATTTTCCCAATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
36959 CATTAGTGCTATCACCCTACGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTCACCCTAAT
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
37023 CA
131 CA
* * *
37025 GTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAAGTAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
*
37090 CATTAGTCCTATCACCCTAAGCCGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
37155 CA
131 CA
*
37157 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAGGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
37222 CATTAGTGCTATCACCCTACGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTTC-CCCTAA
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG-TCACCCTAA
37285 TCA
130 TCA
* *
37288 GTAGTGGAGCAGATCAAAGATGG-GTAATCTTATCTTCCTC-ATACAGTGGAGAAGGAGATTTAA
1 GTAGTGGAGCAGATCGAAGATGGTG-AATCTTATCTTCC-CAATACAGTGGAGAAGCAGATTTAA
* * *
37351 GCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGGT-AGAGATTCCTGATTCTGTCACCCC
64 GCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGA-AGATTGCAGATTCTGTCA-CCC
*
37415 TAATCT
127 TAATCA
*
37421 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCTATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * *
37486 CATTAGTTCTATCACTCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTTTGTCACCCTAAT
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
37551 CA
131 CA
** *
37553 GTAGTGGAGCAGATCG-AGATGGTGAATCTTATCTT-CTTATACAGTGGAGAAGAAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * *
37616 CATTAATCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTGAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCT-AA
37681 T-A
130 TCA
* * *
37683 ATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
37748 CATTAGTCCTATCTCCCTAAGCCA--AGTGGAGTTGGTTGAAGATTGCAGATTCTGTCACCCTAA
66 CATTAGTCCTATCACCCTAAG-CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
37811 -CA
130 TCA
* * * * * *
37813 GTAGTGAAGCAGATCGAATATGATGAATCTTATTTTCCCAATACTGTGGAGAAACAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * * *
37878 CATTAGTCCTATCACCCTAAGAAGTAGTGGAGTCGGTTAAAGATTGCAGATTCTGTTACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA-
37943 T-A
130 TCA
* * * ** *
37945 GTAGTGGAGTAGATCGAAGATGGTGAATCTTCTCTTCCTAATACAGTGGAGGGGCAGATTTATGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
38010 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTTACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
*
38075 GA
131 CA
* * * * * * *
38077 GCT-GCGGAGCGGATCGAAGATCGTGAATCTTATCTTCTCAAGATAGTGGAGAAGTAGATTTAAG
1 G-TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
* * *
38141 CCATTAGTCCTATCATCCTAAGAAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAA
65 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
*
38206 CCA
130 TCA
* * *
38209 GTAGT-GATGTAGATCGAAAATGATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
1 GTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
* * * **
38273 CCATTAGACCTATCTCCCTAAGCAGTAGTGTAGTAGGTTGAAGATTGCAGATTCTGTCACATTAA
65 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
38338 -CA
130 TCA
* *
38340 GTAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTATGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * * *
38405 CATTAGCCCTATCACCCTAA-CTAGTAGTGGAGTAGGTTGAAGACTGCAAATTCTGTGACCCTAA
66 CATTAGTCCTATCACCCTAAGC-AGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
*
38469 GCA
130 TCA
* * * * * *
38472 GTTGTGGAGCGGATCGAAGATGGTGCATCTTATCTTCTCAAGATAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * * * * * *
38537 CTTTAGTCCAATCTCCCTAAGCTGTAGTGGAGTAGGTTGAAGATTGCAGAATCTGTCACCATAAC
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
38602 CA
131 CA
* * * *
38604 GTAGTGGAGTAGATCGAAGATGGTGAATTTTATCTTCCAAATACAGTGGAGAAGTAGATTTAAG-
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * * * *
38668 CATTAGTCCTATCTCCC-AGAGCAGTAGTGGAGTAGGTTAAAGAATGCTGATTTTGTCAC
66 CATTAGTCCTATCACCCTA-AGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
38727 TCTNNNNNNN
Statistics
Matches: 1741, Mismatches: 195, Indels: 75
0.87 0.10 0.04
Matches are distributed among these distances:
129 1 0.00
130 180 0.10
131 510 0.29
132 734 0.42
133 190 0.11
134 3 0.00
135 3 0.00
137 3 0.00
139 72 0.04
140 45 0.03
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (132 bp):
GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
CA
Found at i:37216 original size:263 final size:264
Alignment explanation
Indices: 36622--38726 Score: 2871
Period size: 263 Copynumber: 8.0 Consensus size: 264
36612 NNNNNNNNNN
* * *
36622 GTAGTGGAGCAGATCGAAGCTGGTTAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
36687 CATTAGTCCTATCACCGTAAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
36752 CAGTAGTGGAGCAGATCGAAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
131 CAGTAGT-G-G-AG--C--AGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
* * *
36817 GATTTAAACCATTAGTCCTATCACCCTAAGCCAGTAGTGGAGTAGGTTGAAGATTACAGGTTCTG
189 GATTTAAGCCATTAGTCCTATCACCCTAAG-CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
**
36882 TCACCCTAAAGA
253 TCACCCTAATCA
* * * * * * *
36894 GTAGAGAAGCAAATCGAATATGATGAATCTGATTTTCCCAATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
36959 CATTAGTGCTATCACCCTACGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTCACCCTAAT
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
* * *
37023 CAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAAGTAGATTTAA
131 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
*
37088 GCCATTAGTCCTATCACCCTAAGCCGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTA
196 GCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTA
37153 ATCA
261 ATCA
*
37157 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAGGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
37222 CATTAGTGCTATCACCCTACGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTTC-CCCTAA
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG-TCACCCTAA
* *
37285 TCAGTAGTGGAGCAGATCAAAGATGG-GTAATCTTATCTTCCTC-ATACAGTGGAGAAGGAGATT
130 TCAGTAGTGGAGCAGATCGAAGATGGTG-AATCTTATCTTCC-CAATACAGTGGAGAAGCAGATT
* * *
37348 TAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGGT-AGAGATTCCTGATTCTGTCAC
193 TAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGA-AGATTGCAGATTCTGTCA-
*
37412 CCCTAATCT
256 CCCTAATCA
*
37421 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCTATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * *
37486 CATTAGTTCTATCACTCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTTTGTCACCCTAAT
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
** *
37551 CAGTAGTGGAGCAGATCG-AGATGGTGAATCTTATCTT-CTTATACAGTGGAGAAGAAGATTTAA
131 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
* *
37614 GCCATTAATCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTG
196 GCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCT-
*
37679 AGT-A
260 AATCA
* * *
37683 ATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
37748 CATTAGTCCTATCTCCCTAAGCCA--AGTGGAGTTGGTTGAAGATTGCAGATTCTGTCACCCTAA
66 CATTAGTCCTATCACCCTAAG-CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
* * * * * *
37811 -CAGTAGTGAAGCAGATCGAATATGATGAATCTTATTTTCCCAATACTGTGGAGAAACAGATTTA
130 TCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTA
* * * *
37875 AGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTCGGTTAAAGATTGCAGATTCTGTTACCCT
195 AGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCT
37940 AAGT-A
260 AA-TCA
* * * ** *
37945 GTAGTGGAGTAGATCGAAGATGGTGAATCTTCTCTTCCTAATACAGTGGAGGGGCAGATTTATGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
38010 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTTACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
* * * * * * * *
38075 GAGCT-GCGGAGCGGATCGAAGATCGTGAATCTTATCTTCTCAAGATAGTGGAGAAGTAGATTTA
131 CAG-TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTA
* * *
38139 AGCCATTAGTCCTATCATCCTAAGAAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCT
195 AGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCT
*
38204 AACCA
260 AATCA
* * *
38209 GTAGT-GATGTAGATCGAAAATGATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
1 GTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
* * * **
38273 CCATTAGACCTATCTCCCTAAGCAGTAGTGTAGTAGGTTGAAGATTGCAGATTCTGTCACATTAA
65 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
*
38338 -CAGTAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTA
130 TCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTA
* * * * *
38402 TGCCATTAGCCCTATCACCCTAA-CTAGTAGTGGAGTAGGTTGAAGACTGCAAATTCTGTGACCC
195 AGCCATTAGTCCTATCACCCTAAGC-AGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCC
*
38466 TAAGCA
259 TAATCA
* * * * * *
38472 GTTGTGGAGCGGATCGAAGATGGTGCATCTTATCTTCTCAAGATAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * * * * * *
38537 CTTTAGTCCAATCTCCCTAAGCTGTAGTGGAGTAGGTTGAAGATTGCAGAATCTGTCACCATAAC
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
* * * *
38602 CAGTAGTGGAGTAGATCGAAGATGGTGAATTTTATCTTCCAAATACAGTGGAGAAGTAGATTTAA
131 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
* * * * *
38667 G-CATTAGTCCTATCTCCC-AGAGCAGTAGTGGAGTAGGTTAAAGAATGCTGATTTTGTCAC
196 GCCATTAGTCCTATCACCCTA-AGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
38727 TCTNNNNNNN
Statistics
Matches: 1640, Mismatches: 166, Indels: 63
0.88 0.09 0.03
Matches are distributed among these distances:
260 17 0.01
261 56 0.03
262 247 0.15
263 661 0.40
264 498 0.30
265 34 0.02
266 1 0.00
268 2 0.00
269 1 0.00
270 1 0.00
271 26 0.02
272 96 0.06
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (264 bp):
GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
GCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTA
ATCA
Found at i:38492 original size:527 final size:528
Alignment explanation
Indices: 36622--38726 Score: 2893
Period size: 527 Copynumber: 4.0 Consensus size: 528
36612 NNNNNNNNNN
* * *
36622 GTAGTGGAGCAGATCGAAGCTGGTTAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
36687 CATTAGTCCTATCACCGTAAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
36752 CAGTAGTGGAGCAGATCGAAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
131 CAGTAGT-G-G-AG--C--AGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
* * *
36817 GATTTAAACCATTAGTCCTATCACCCTAAGCCAGTAGTGGAGTAGGTTGAAGATTACAGGTTCTG
189 GATTTAAGCCATTAGTCCTATCACCCTAAG-CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
* * * * * * * *
36882 TCACCCTAAAG-AGTAGAGAAGCAAATCGAATATGATGAATCTGATTTTCCCAATACAGTGGAGA
253 TCACCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATACAGTGGAGA
* *
36946 AGCAGATTTAAGCCATTAGTGCTATCACCCTACGCAGTAGTGGAGTAGGTTGAAGATT-CAGATT
317 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
* *
37010 CTGTCACCCTAATCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATATAGTGGA
382 CTGTCACCCTAATCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAATATAGTGGA
* *
37075 GAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCCGTAGTGGAGTAGGTTGAAGATTGCAGA
447 GAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGA
*
37140 TTCTGTCACCCTAATCA
512 TTCTGTCACCCTAACCA
*
37157 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAGGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
37222 CATTAGTGCTATCACCCTACGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTTC-CCCTAA
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG-TCACCCTAA
* *
37285 TCAGTAGTGGAGCAGATCAAAGATGG-GTAATCTTATCTTCCTC-ATACAGTGGAGAAGGAGATT
130 TCAGTAGTGGAGCAGATCGAAGATGGTG-AATCTTATCTTCC-CAATACAGTGGAGAAGCAGATT
* * *
37348 TAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGGT-AGAGATTCCTGATTCTGTCAC
193 TAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGA-AGATTGCAGATTCTGTCA-
* *
37412 CCCTAATCTGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCT-ATACAGTGGAGAAGC
256 CCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTT-CCTAATACAGTGGAGAAGC
* * *
37476 AGATTTAAGCCATTAGTTCTATCACTCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTTTG
320 AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
* *
37541 TCACCCTAATCAGTAGTGGAGCAGATCG-AGATGGTGAATCTTATCTTCT-TATACAGTGGAGAA
385 TCACCCTAATCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAATATAGTGGAGAA
* *
37604 GAAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTC
450 GTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTC
* **
37669 TGTCACCCTGAGTA
515 TGTCACCCTAACCA
* * *
37683 ATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
37748 CATTAGTCCTATCTCCCTAAGCCA--AGTGGAGTTGGTTGAAGATTGCAGATTCTGTCACCCTAA
66 CATTAGTCCTATCACCCTAAG-CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
* * * * * *
37811 -CAGTAGTGAAGCAGATCGAATATGATGAATCTTATTTTCCCAATACTGTGGAGAAACAGATTTA
130 TCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTA
* * * *
37875 AGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTCGGTTAAAGATTGCAGATTCTGTTACCCT
195 AGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCT
* * * **
37940 AAGTAGTAGTGGAGTAGATCGAAGATGGTGAATCTTCTCTTCCTAATACAGTGGAGGGGCAGATT
260 AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATACAGTGGAGAAGCAGATT
* *
38005 TATGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTTACC
325 TAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACC
** * * * *
38070 CTAAGGAGCT-GCGGAGCGGATCGAAGATCGTGAATCTTATCTTCTCAAGATAGTGGAGAAGTAG
390 CTAATCAG-TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAATATAGTGGAGAAGTAG
* * * *
38134 ATTTAAGCCATTAGTCCTATCATCCTAAGAAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTC
454 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTC
38199 ACCCTAACCA
519 ACCCTAACCA
* * *
38209 GTAGT-GATGTAGATCGAAAATGATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
1 GTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
* * * **
38273 CCATTAGACCTATCTCCCTAAGCAGTAGTGTAGTAGGTTGAAGATTGCAGATTCTGTCACATTAA
65 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
*
38338 -CAGTAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTA
130 TCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTA
* * * * *
38402 TGCCATTAGCCCTATCACCCTAA-CTAGTAGTGGAGTAGGTTGAAGACTGCAAATTCTGTGACCC
195 AGCCATTAGTCCTATCACCCTAAGC-AGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCC
* * * * *
38466 TAAGCAGTTGTGGAGCGGATCGAAGATGGTGCATCTTATCTT-CTCAAGATAGTGGAGAAGCAGA
259 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCT-AATACAGTGGAGAAGCAGA
* * * * *
38530 TTTAAGCCTTTAGTCCAATCTCCCTAAGCTGTAGTGGAGTAGGTTGAAGATTGCAGAATCTGTCA
323 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
* * * * *
38595 CCATAACCAGTAGTGGAGTAGATCGAAGATGGTGAATTTTATCTTC-CAAATACAGTGGAGAAGT
388 CCCTAATCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTC-AATATAGTGGAGAAGT
* * * *
38659 AGATTTAAG-CATTAGTCCTATCTCCC-AGAGCAGTAGTGGAGTAGGTTAAAGAATGCTGATTTT
452 AGATTTAAGCCATTAGTCCTATCACCCTA-AGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCT
38722 GTCAC
516 GTCAC
38727 TCTNNNNNNN
Statistics
Matches: 1393, Mismatches: 151, Indels: 61
0.87 0.09 0.04
Matches are distributed among these distances:
523 3 0.00
524 136 0.10
525 153 0.11
526 425 0.31
527 506 0.36
528 38 0.03
529 1 0.00
531 2 0.00
532 1 0.00
533 1 0.00
534 23 0.02
535 104 0.07
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (528 bp):
GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAT
CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
GCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTA
AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATACAGTGGAGAAGCAGATTT
AAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCC
TAATCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAATATAGTGGAGAAGTAGAT
TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCAC
CCTAACCA
Found at i:41647 original size:132 final size:132
Alignment explanation
Indices: 41341--42606 Score: 1575
Period size: 132 Copynumber: 9.6 Consensus size: 132
41331 AAAATAACGA
* * * * *
41341 ATTCTGTCCACCACTAAGAAAGTAGTGAAGTAGATCGAAGATTGTGAATCTTATC-TTCACAAAA
1 ATTCTGT-CACC-CTAAG-CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTC-CAATA
* * * *
41405 CAGTGGAGAAAGCAGATTTAAGGCATTAGTCCTATCATCCTAAGCAGTAGTCGAGTCAGGTCGCA
62 CAGTGGAG-AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGT-AGGTTGAA
**
41470 CCTTGCAG
125 GATTGCAG
* * *
41478 ATTCTGTCACCCTAACCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTTCCAGTACAGT
1 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATACAGT
*
41543 GGAGAAGCAGATTTTAAG-CATTAGTCCTATCATCCTAAGCAGTATTGGAGTAGGTTGAAGATTG
66 GGAGAAGCAGA-TTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
41607 CAG
130 CAG
* * *
41610 ATTCTGTCACCCTAAGCAGTAGTGCAGCAGATCGAAGATGGTGAATCATATC-TTCTCAAGACAG
1 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTC-CAATACAG
* * * * *
41674 TGGAGAAGAAGATTTAAGCCATTAGTCCAATC-TCCCTAAGCAATAGTGGAGTAGGTTTAGGATT
65 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAGCAGTAGTGGAGTAGGTTGAAGATT
41738 GCAG
129 GCAG
* * * * *
41742 ATTCTGTCACCCTAAGCAGTAGTGGAGTACATCGAAGATCGTGAATCTTATCTTCCCAATATAGT
1 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATACAGT
* * * * * * *
41807 GGAGCAGCAGATTTAAGCCATTACTCCTATCACCCTCACCAGTAGGGGAGTAGGCTGAAGATTGC
66 GGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
41872 AG
131 AG
**
41874 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATC-TTCCTAATACAG
1 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCC-AATACAG
* * *
41938 TGGAGAAGCAGATTTAAGCCATTAGTCCTATC-TCCCAAAGCCA-TGGTGG-GCTTGGTTGAAGA
65 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAG-CAGTAGTGGAG-TAGGTTGAAGA
42000 TTGCAG
127 TTGCAG
* ** * * * *
42006 ATTCTGTCACCTTAAATAGTAGTGAAGCAGATCGAATATGATGAAACTTAT-TTTCCCAATACAG
1 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTT-CCAATACAG
* * * *
42070 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTCGGTTGAAGATTA
65 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
42135 CAG
130 CAG
* * * * **
42138 ATTTTGTCACCCTAAGCAGTAGTCGAGTAGATCGAAGATGGTGAATCATATCTACCCAATACAGT
1 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATACAGT
* * * *
42203 GGAGAAGCAGATTTAAGCAATTAGTCCTATCACCCTCAGCAGTAGTGGAGTAGGCTGAAGATTGC
66 GGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
42268 AG
131 AG
* * * *
42270 ATTCTGTCAGCCTAAGCAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGT
1 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATACAGT
* * * * *
42335 GGAAAAGCAGATTTAAGCCGTTAGTCCTATC-TCCCTCAGCAATAGTGGAGTAGGCTGAAGATTG
66 GGAGAAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
42399 CAG
130 CAG
*
42402 ATTCTGTCACCCTAAG-ATGTAGTGCAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATACAG
1 ATTCTGTCACCCTAAGCA-GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATACAG
* * * * *
42466 TGGAGAAGTAGATTTAAGCCATTAGTCCTACCACCCTAAGCACTGGTGGAGTAGGTTGAAGATTG
65 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
42531 CAG
130 CAG
* * * *
42534 ATTCTCTCACCCTAAGTAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATC-TTCCTAATATAG
1 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCC-AATACAG
42598 TGGAGAAGC
65 TGGAGAAGC
42607 TGANNNNNNN
Statistics
Matches: 982, Mismatches: 125, Indels: 49
0.85 0.11 0.04
Matches are distributed among these distances:
131 21 0.02
132 846 0.86
133 47 0.05
134 50 0.05
135 7 0.01
136 4 0.00
137 7 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (132 bp):
ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATACAGT
GGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
AG
Found at i:46109 original size:44 final size:44
Alignment explanation
Indices: 46059--46257 Score: 130
Period size: 44 Copynumber: 4.5 Consensus size: 44
46049 TTAGTTTTAA
46059 CACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGT
* ** **
46103 CACCCTAAGCAGTAGTGGAG-CGGATCGAAGA-TGGGGATTCT-T
1 CACCCTAAGCAGTAGTGGAGTAGG-TTAAAGATTGCAGATTCTGT
** * * * *
46145 -ATGTTCTCAAG-A-TAGTGGAG-AAG---CAGATTTCAGCCATTAGTCATAT
1 CA--CCCT-AAGCAGTAGTGGAGTAGGTTAAAGATTGCAG--A-T--TC-TGT
*
46191 CACCCTAAGCAGTAGTGGTGTAGGTTAAAGATTGCAGATTCTGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGT
46235 CACCCTAAGCAGTAGTGGAGTAG
1 CACCCTAAGCAGTAGTGGAGTAG
46258 ATCGAAGATA
Statistics
Matches: 115, Mismatches: 21, Indels: 38
0.66 0.12 0.22
Matches are distributed among these distances:
38 3 0.03
39 2 0.02
41 2 0.02
42 11 0.10
43 13 0.11
44 57 0.50
45 6 0.05
46 8 0.07
47 4 0.03
48 1 0.01
50 8 0.07
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (44 bp):
CACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGT
Found at i:46579 original size:132 final size:132
Alignment explanation
Indices: 43361--46565 Score: 4101
Period size: 132 Copynumber: 24.3 Consensus size: 132
43351 NNNNNNNNNN
* ** * ** * * *
43361 GATGGTGAATCATATCTTTTCAAGATTGTGGAGAAGCAGATGTAAGCCATTAGTCCAATCTCCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * *
43426 ATGCAGTAGTGGAGTAGCTTGAAGATTGCAGATTCTGTCA-CCTAAGCAGTAGTGGAGTAGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
*
43490 AG
131 AA
* * * * *
43492 GATGGTGAATCTTATCATCCCAACACAGTAGAGAAGCAGATTTAAGCCATTAGACCTATCTCCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* ** * *
43557 AAGCAGTAGTGTAGTAGGTTGAAGATAACAGATTCTGTCACCTTAAACAGTAGTGGAGCAGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
43622 AA
131 AA
* * * * * *
43624 TATGATGAATCTTATCTTCCCAATACAATGGAGAAGTAAATTTAAGCCATTATTCCTATCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* *
43689 AAGAAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
43754 AA
131 AA
**
43756 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAAACCTATCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * * * * * * * *
43821 AAGCAGTAGTGGGAGTACGTTGAGGATTGAAGATTCTATCAACCTAAGTAATAGTGGAGGAGATT
66 AAGCAGTAGT-GGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
43886 GAA
130 GAA
* * *
43889 GATGGCGAATCTTATCTTCCCAATACAGTGGAGAAAGCAGATTTAA-CCATTA-TTCTATCTCCC
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAG-AAGCAGATTTAAGCCATTAGTCCTATCACCC
* * *
43952 TAAGACA-TAGTGGAGTAGGCTGAACATTGCAGATTCTGTCACCCTAAG-ATGTAGTGCAGCAGA
65 TAAG-CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA-GTAGTGGAGCAGA
44015 TCGAA
128 TCGAA
* * * *
44020 GATGGTGAATCTTATCTTTCCAATACAGTGGAGAAGTAGATTTAAGCCTTTAGTCCTACCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * * * * ** * * *
44085 AAACACT-GTCGGACTAGGTTGAACATTGCCA-ATTCTCTCACCCTATTTC-CTTGTGGATTCA-
66 AAGCAGTAGT-GGAGTAGGTTGAAGATTG-CAGATTCTGTCACCCTA-AGCAGTAGTGGA-GCAG
44146 ATCGAA
127 ATCGAA
* * * *
44152 GATTGTGAATCTTATCTTCCTAATATAGTGGAGAAGCTGATTTAAGCCATTAGTCCTATCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * * * *
44217 AAGCAGTAGTGGAGTAGGTTGACGATAGCGGATTCTGTCACCCTAAGGAGTAGTGGAGTAGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
44282 AA
131 AA
*
44284 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * *
44349 AAGCAGTAGTCGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAACCAGTAGT-GATGCAGATC
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATC
44413 GAA
130 GAA
* *
44416 GATGGTGAATCTTATCTTCCCAGTACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * *
44481 AAGCAGTATTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGCAGCGGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
44546 AA
131 AA
* * * * * * * * *
44548 GATGGTGAATCATATCTTCTCAAGATAGTAGAGAAGAAGATGTAAGCCATTAGTCCAATCTCCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * * * * *
44613 AAACAATAGTGGAGTAGGTTTAGGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTACATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
44678 AA
131 AA
* * * * *
44680 GATCGTGAATCTTATCTTCCCAATATAGTGGAGCAGCATATTTAAGCCATTACTCCTATCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* ** *
44745 CAGCAGTAG-GAGAGTAGGCGGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATC
66 AAGCAGTAGTG-GAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
44809 GAA
130 GAA
* * *
44812 GATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGCAGATTTAAGCCATTAGACCTATCTCCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* ** * *
44877 AAGCAGTAGTGTAGTAGGTTGAAGATAACAGATTCTGTCACCTTAAACAGTAGTGGAGCAGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
44942 AA
131 AA
* * * * * * *
44944 TATGATGAATCTTATCTTCCCAATACAATGGAGAAGTAAATTTAAGCCATTATTCTTATCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * *
45009 AAGAAGTACTGGAGTAGGTTGAAGATTGCAAATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
45074 AA
131 AA
*
45076 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAACGCCTATTA-ACCTATCACC
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA-GCC-ATTAGTCCTATCACC
* ** * * * * * * *
45140 CTAAGGAGTAGTGGAGTACTTTGAGGATTGAAGATTCTATCAACCTAAGTAATAGTGGAGGAGAT
64 CTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGAT
45205 CGAA
129 CGAA
** * * *
45209 GATGGTGAATCTTATCTTCCCAATACAGCAGAGAAGTAGATTTAAACCATTAGTCCTATCTCCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
** * ** *
45274 AAGCCA-TAGTGGAGTTCGTTGGAGATTATAGATTCTGTCACCCTAAACAGTAGT-GATGCAGAT
66 AAG-CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGAT
45337 CGAA
129 CGAA
* * *
45341 TATGATGAATCTTATTTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * *
45406 AAGAAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTTACCCTAAGCAGTTGTGGAGC-GAATC
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAG-ATC
45470 GAA
130 GAA
* * * * * *
45473 GATGGTGAATCTTATCTTCTCAAGATAGTGGAGAAGCAAATTTAAGCCATTAGTCCAATCTCCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * * *
45538 AAGCTGTAGTGGAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAGAAGTAGTGGAGTAGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
45603 AA
131 AA
* * * *
45605 GATGGTGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* *
45670 GAGCAGTAGTGGGGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
45735 AA
131 AA
* * * *
45737 TATGGTGAATCTTATTTTCCCAATACAGTGGAGAAGCAAATTTAAGCCATTAGTCATATCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * * *
45802 AAGTAGTAGTGGTGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGAAGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
45867 AA
131 AA
* * *
45869 GAGGGTGAATCTTATCTTCCCAATACAGT-GAGAAGCGGATTTAAGCCATTAGTCCAATCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * * *
45933 AAGCAGAAGTGGAGTAGGTTGTAGATTGCAGATTCTGTCACACTAACCAGTAGT-GATGCAGATC
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATC
45997 GAA
130 GAA
* * ** *
46000 TATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAATCCATTAGTTTTAACACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* *
46065 AAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCGGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
46130 AA
131 AA
* * * * * * * *
46132 GATGGGGATTCTTATGTTCTCAAGATAGTGGAGAAGCAGATTTCAGCCATTAGTCATATCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * *
46197 AAGCAGTAGTGGTGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCG
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
46262 AA
131 AA
* *
46264 GATAGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCAATCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * * *
46329 AAGCAGTACTGGAATAGGTTGAAGATTGCAGATTCTGTCACCCTAACCAGTA-TTGATGCAGATC
66 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATC
46393 GAA
130 GAA
* * ** *
46396 GATGGTGAATCTTATCTTCCCGATATAGTGGAGAAGCAGATTTACTCCATTAGTCTTATCACCCT
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * * * * * * *
46461 AAGAAGTGGAGGAATAGGTT-ATAGATTGGAGATTCTGTCCCCCTTAGCAGGAGTGGAG-AGGAT
66 AAGCAGTAGTGGAGTAGGTTGA-AGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCA-GAT
*
46524 CGGA
129 CGAA
* * *
46528 GATGGTGATTCTTTTCTTCCCAAGACAGTGGAGAAGCA
1 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
46566 TATTGCGGCC
Statistics
Matches: 2649, Mismatches: 388, Indels: 73
0.85 0.12 0.02
Matches are distributed among these distances:
130 14 0.01
131 305 0.12
132 2099 0.79
133 215 0.08
134 16 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (132 bp):
GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
AA
Found at i:47473 original size:132 final size:132
Alignment explanation
Indices: 47126--48267 Score: 1511
Period size: 132 Copynumber: 8.7 Consensus size: 132
47116 NNNNNNNNNN
* * * *
47126 TTGCAGATTCTGTCACCCTAACCAGTAGT-GATGTAGATCGAAAATGATGAATCTTATCTTCCCA
1 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCA
* * *
47190 ATACAGTGGAGAAGCAGATTTAAGCCATTAGACCTATCTCCCTAAGCAGTAGTGTAGTAGGTTGA
65 ATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGA
47255 AGA
130 AGA
** *
47258 TTGCAGATTCTGTCACATTAA-CAGTAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAA
1 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
* * *
47322 TACAGTGGAGAAGCAGATTTATGCCATTAGCCCTATCACCCTAAGTAGTAGTGGAGTAGGTTGAA
66 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAA
47387 GA
131 GA
* * * * * * *
47389 CTGCAAATTCTGTGACCCTAAGCAGTTGTGGAGCGGATCGAAGATGGTGCATCTTATCTTCTCAA
1 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
* * * * * *
47454 GATAGTGGAGAAGCAGATTTAAGCCTTTAGTCCAATCTCCCTAAGCTGTAGTGGAGTAGGTTGAA
66 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAA
47519 GA
131 GA
* * * * *
47521 TTGCAGATTCTGTCACCATAACCAGTAGTGGAGTAGATCGAAGATGGTGAATTTTATCTTCCAAA
1 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
* *
47586 TACAGTGGAGAAGCAGATTTAAG-CATTAGTCCTATCTCCC-AGAGCAGTAGTGGAGTAGGTTAA
66 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTA-AGCAGTAGTGGAGTAGGTTGA
47649 AGA
130 AGA
* * * * * * *
47652 ATGCTGATTTTGTCACCCTAAACAGTAGTGGAGCAGATCGAATATGATGAATCCTATCTTCCCAA
1 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
** * * *
47717 TACAGCAGAGAAGCAGATATAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAAGTTGAA
66 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAA
47782 GA
131 GA
* * * * *
47784 TTACAGATTCTGTCACCCTAAGCAATAGTGGAGGAGATCGAAGATGCTAAATCTTATCTTCCCAA
1 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
* * * *
47849 TACAGTGGAGAAGCAGATTTAAGCAATTAGTCCTATCACCCTAAGAAGTAGTGGAGTCGGTTAAA
66 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAA
47914 GA
131 GA
*
47916 TTGCAGATTCTGTCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
1 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
*
47981 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCAAAGCAGTAGTGGAGTAGGTTGAA
66 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAA
48046 GA
131 GA
* * * * * * *
48048 TTGCAGATTTTGTTACCCTAAGTAGTTGTGGAGCGGATCGAAGATGGTGAATCTTATCCTCTCAA
1 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
* * * * * * * *
48113 GATAGTGGAGAAGTAGATTTAAGCAATTAGTCCAAT-ATCCCTTAGCTGCAGTGGAGTAGGTTGA
66 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCA-CCCTAAGCAGTAGTGGAGTAGGTTGA
48177 AGA
130 AGA
* ** * *
48180 TTGCAGATTCTATCACCAAAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCAAA
1 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
** *
48245 TAGTGTGGAGAAGTAGATTTAAG
66 TACAGTGGAGAAGCAGATTTAAG
48268 ATTGCAGATT
Statistics
Matches: 880, Mismatches: 124, Indels: 12
0.87 0.12 0.01
Matches are distributed among these distances:
130 1 0.00
131 227 0.26
132 651 0.74
133 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (132 bp):
TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAA
GA
Found at i:47858 original size:395 final size:395
Alignment explanation
Indices: 47126--48267 Score: 1547
Period size: 395 Copynumber: 2.9 Consensus size: 395
47116 NNNNNNNNNN
* *
47126 TTGCAGATTCTGTCACCCTAACCAGTAGT-GATGTAGATCGAAAATGATGAATCTTATCTTCCCA
1 TTGCAGATTCTGTCACCCTAACCAGTAGTGGA-GTAGATCGAAGATGGTGAATCTTATCTTCCCA
* *
47190 ATACAGTGGAGAAGCAGATTTAAGCCATTAGACCTATCTCCCTAAGCAGTAGTGTAGTAGGTTGA
65 ATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCC-AAGCAGTAGTGGAGTAGGTTGA
* * * *
47255 AGATTGCAGATTCTGTCA-CATTAACAGTAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCC
129 AGATTGCAGATTTTGTCACCCTAAACAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCC
* * *
47319 CAATACAGTGGAGAAGCAGATTTATGCCATTAGCCCTATCACCCTAAGTAGTAGTGGAGTAGGTT
194 CAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAGGTT
* * * * *
47384 GAAGACTGCAAATTCTGTGACCCTAAGCAGTTGTGGAGCG-GATCGAAGATGGTGCATCTTATCT
259 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG-GAGATCGAAGATGGTGAATCTTATCT
* * * ** * **
47448 TCTCAAGATAGTGGAGAAGCAGATTTAAGCCTTTAGTCCAATCTCCCTAAGCTGTAGTGGAGTAG
323 TCCCAATACAGTGGAGAAGCAGATTTAAGCAATTAGTCCAATCACCCTAAGAAGTAGTGGAGTAG
*
47513 GTTGAAGA
388 GTTAAAGA
* * *
47521 TTGCAGATTCTGTCACCATAACCAGTAGTGGAGTAGATCGAAGATGGTGAATTTTATCTTCCAAA
1 TTGCAGATTCTGTCACCCTAACCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAA
*
47586 TACAGTGGAGAAGCAGATTTAAG-CATTAGTCCTATCTCCCAGAGCAGTAGTGGAGTAGGTTAAA
66 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCA-AGCAGTAGTGGAGTAGGTTGAA
* * * * *
47650 GAATGCTGATTTTGTCACCCTAAACAGTAGTGGAGCAGATCGAATATGATGAATCCTATCTTCCC
130 GATTGCAGATTTTGTCACCCTAAACAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
** * *
47715 AATACAGCAGAGAAGCAGATATAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAAGTTG
195 AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAGGTTG
* * * *
47780 AAGATTACAGATTCTGTCACCCTAAGCAATAGTGGAGGAGATCGAAGATGCTAAATCTTATCTTC
260 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTC
* *
47845 CCAATACAGTGGAGAAGCAGATTTAAGCAATTAGTCCTATCACCCTAAGAAGTAGTGGAGTCGGT
325 CCAATACAGTGGAGAAGCAGATTTAAGCAATTAGTCCAATCACCCTAAGAAGTAGTGGAGTAGGT
47910 TAAAGA
390 TAAAGA
** *
47916 TTGCAGATTCTGTCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
1 TTGCAGATTCTGTCACCCTAACCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAA
*
47981 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCAAAGCAGTAGTGGAGTAGGTTGAA
66 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCC-AAGCAGTAGTGGAGTAGGTTGAA
* ** * * * *
48046 GATTGCAGATTTTGTTACCCTAAGTAGTTGTGGAGCGGATCGAAGATGGTGAATCTTATCCTCTC
130 GATTGCAGATTTTGTCACCCTAAACAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
* * * * * * ** *
48111 AAGATAGTGGAGAAGTAGATTTAAGCAATTAGTCCAAT-ATCCCTTAGCTGCAGTGGAGTAGGTT
195 AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCA-CCCTAAGAAGTAGTGGAGTAGGTT
* ** *
48175 GAAGATTGCAGATTCTATCACCAAAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTT
259 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGGAGATCGAAGATGGTGAATCTTATCTT
* ** *
48240 CCAAATAGTGTGGAGAAGTAGATTTAAG
324 CCCAATACAGTGGAGAAGCAGATTTAAG
48268 ATTGCAGATT
Statistics
Matches: 651, Mismatches: 89, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
393 1 0.00
394 51 0.08
395 376 0.58
396 222 0.34
397 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (395 bp):
TTGCAGATTCTGTCACCCTAACCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAA
TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCAAGCAGTAGTGGAGTAGGTTGAAG
ATTGCAGATTTTGTCACCCTAAACAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCA
ATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAGGTTGA
AGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCC
CAATACAGTGGAGAAGCAGATTTAAGCAATTAGTCCAATCACCCTAAGAAGTAGTGGAGTAGGTT
AAAGA
Found at i:48271 original size:89 final size:89
Alignment explanation
Indices: 48167--48356 Score: 229
Period size: 89 Copynumber: 2.1 Consensus size: 89
48157 GCTGCAGTGG
* * * *
48167 AGTAGGTTGAAGATTGCAGATTCTATCA-CCAAAAGCAGTAGTGGAGTAGATCGAAGATGGTGAA
1 AGTAGATTTAAGATTGCAGATTCTATCACCCAAAA-CAGTAGTGGAGCAGATCGAAGATGATGAA
**
48231 TCTTATCTTCCAAATAGTGTGGAGA
65 TCTTATCTTCCAAATACAGTGGAGA
* * * * **
48256 AGTAGATTTAAGATTGCAGATTTTGTCACCCTAAACAGTAGTGGTGCAGATCGACTATGATGAAT
1 AGTAGATTTAAGATTGCAGATTCTATCACCCAAAACAGTAGTGGAGCAGATCGAAGATGATGAAT
*
48321 CTTATCTTCCCAATACAGTGGAGA
66 CTTATCTTCCAAATACAGTGGAGA
**
48345 AACAGATTTAAG
1 AGTAGATTTAAG
48357 CCATTAGTCC
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
89 80 0.94
90 5 0.06
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (89 bp):
AGTAGATTTAAGATTGCAGATTCTATCACCCAAAACAGTAGTGGAGCAGATCGAAGATGATGAAT
CTTATCTTCCAAATACAGTGGAGA
Found at i:48432 original size:221 final size:221
Alignment explanation
Indices: 48035--48488 Score: 579
Period size: 221 Copynumber: 2.1 Consensus size: 221
48025 GCAGTAGTGG
* * * ** * * *
48035 AGTAGGTTGAAGATTGCAGATTTTGTTACCCTAAGTAGTTGTGGAGCGGATCGAAGATGGTGAAT
1 AGTAGATTTAAGATTGCAGATTTTGTCACCCTAAACAGTAGTGGAGCAGATCGAAGATGATGAAT
* * ** * **
48100 CTTATCCTCTCAAGATAGTGGAGAAGTAGATTTAAGCAATTAGTCCAATATCCCTTAGCTGCAGT
66 CTTATCCTCCCAAGACAGTGGAGAAACAGATTTAAGCAATTAGTCCAATATCCCTAAGAAGCAGT
* * *
48165 GGAGTAGGTTGAAGATTGCAGATTCTATCACCAAAAGCAGTAGTGGAGTAGATCGAAGATGGTGA
131 GGAGTAAGTTGAAGATTGCAGATTCTATCACCAAAAGCAATAGTGGAGGAGATCGAAGATGGTGA
* **
48230 ATCTTATCTT-CCAAATAGTGTGGAGA
196 ATCTGATCTTACC-AATACAGTGGAGA
* **
48256 AGTAGATTTAAGATTGCAGATTTTGTCACCCTAAACAGTAGTGGTGCAGATCGACTATGATGAAT
1 AGTAGATTTAAGATTGCAGATTTTGTCACCCTAAACAGTAGTGGAGCAGATCGAAGATGATGAAT
* * * * *
48321 CTTATCTTCCCAATACAGTGGAGAAACAGATTTAAGCCATTAGTCCTATCA-CCCTAAGAAGTAG
66 CTTATCCTCCCAAGACAGTGGAGAAACAGATTTAAGCAATTAGTCCAAT-ATCCCTAAGAAGCAG
* **
48385 TGGAGTAAGTTGAAGATTGCAGATTCTGTCACCCTAAGCAATAGTGGAGGAGATCGAAGATGGTG
130 TGGAGTAAGTTGAAGATTGCAGATTCTATCACCAAAAGCAATAGTGGAGGAGATCGAAGATGGTG
48450 AATCTGATCTTACCAATACAGTGGAGA
195 AATCTGATCTTACCAATACAGTGGAGA
*
48477 AGCAGATTTAAG
1 AGTAGATTTAAG
48489 CCATTAGTCC
Statistics
Matches: 198, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
221 195 0.98
222 3 0.02
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (221 bp):
AGTAGATTTAAGATTGCAGATTTTGTCACCCTAAACAGTAGTGGAGCAGATCGAAGATGATGAAT
CTTATCCTCCCAAGACAGTGGAGAAACAGATTTAAGCAATTAGTCCAATATCCCTAAGAAGCAGT
GGAGTAAGTTGAAGATTGCAGATTCTATCACCAAAAGCAATAGTGGAGGAGATCGAAGATGGTGA
ATCTGATCTTACCAATACAGTGGAGA
Found at i:48502 original size:132 final size:132
Alignment explanation
Indices: 48265--48652 Score: 632
Period size: 132 Copynumber: 2.9 Consensus size: 132
48255 AAGTAGATTT
* * * ** *
48265 AAGATTGCAGATTTTGTCACCCTAAACAGTAGTGGTGCAGATCGACTATGATGAATCTTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
* * *
48330 CCAATACAGTGGAGAAACAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAAGT
66 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGC
48395 TG
131 TG
* * * *
48397 AAGATTGCAGATTCTGTCACCCTAAGCAATAGTGGAGGAGATCGAAGATGGTGAATCTGATCTTA
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
* *
48462 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTCAGCAGTAGTGGAGTAGGC
66 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGC
48527 TG
131 TG
48529 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
*
48594 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGGCCTATCACCCTAAGCAGTAGTGGA
66 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGA
48653 TCAGATCGAA
Statistics
Matches: 235, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 235 1.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGC
TG
Found at i:48576 original size:44 final size:44
Alignment explanation
Indices: 48369--48577 Score: 119
Period size: 44 Copynumber: 4.8 Consensus size: 44
48359 ATTAGTCCTA
* * *
48369 TCACCCTAAGAAGTAGTGGAGTA-AGTTGAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGCAGA-TCGAAGATTGCAGATTCTG
* * ** *
48413 TCACCCTAAGCAATAGTGGAGGAGATCGAAGA-TGGTGAATCTG
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATTCTG
* * * * ** * *
48456 ATCTTA-CC-AATACAGTGGAGAAGCAGATTTAAGCCATT--AG-TCCTA
1 -TC--ACCCTAA-GCAGTAGTGGAGCAGATCGAAG--ATTGCAGATTCTG
* * *
48501 TCACCCTCAGCAGTAGTGGAGTAG-GCTGAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGCAGATC-GAAGATTGCAGATTCTG
48545 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
48578 GGTGAATCTT
Statistics
Matches: 117, Mismatches: 33, Indels: 30
0.65 0.18 0.17
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 25 0.21
44 64 0.55
45 20 0.17
46 2 0.02
47 1 0.01
48 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (44 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATTCTG
Found at i:48644 original size:88 final size:88
Alignment explanation
Indices: 48545--48741 Score: 358
Period size: 88 Copynumber: 2.2 Consensus size: 88
48535 GCAGATTCTG
48545 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
48610 GCAGATTTAAGCCATTAGGCCTA
66 GCAGATTTAAGCCATTAGGCCTA
* * *
48633 TCACCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATTTTATCTTCCCAATATAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
*
48698 GCAGATTTAAGCCATTAGTCCTA
66 GCAGATTTAAGCCATTAGGCCTA
48721 TCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
48742 TAGGTTGAAG
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 104 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (88 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGGCCTA
Found at i:48661 original size:220 final size:219
Alignment explanation
Indices: 48413--48872 Score: 740
Period size: 220 Copynumber: 2.1 Consensus size: 219
48403 GCAGATTCTG
* *
48413 TCACCCTAAGCAATAGTGGAGGAGATCGAAGATGGTGAATCTGATCTTACCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTGATCTTACCAATACAGTGGAGAA
* *
48478 GCAGATTTAAGCCATTAGTCCTATCACCCTCAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATTC
* *
48543 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
131 TGTCACCCTAA-AAGTAGTGGAACAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
*
48608 AAGCAGATTTAAGCCATTAGGCCTA
195 AAGCAGATTTAAGCCATCAGGCCTA
* * * * *
48633 TCACCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATTTTATCTTCCCAATATAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTGATCTTACCAATACAGTGGAGAA
* *
48698 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGGTTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATTC
* *
48763 TGTTACCCTAAAAGTAGTGGAACAGATCGAAGATGGTGAATCTTATCTTCCCAATAGAGTGGAGA
131 TGTCACCCTAAAAGTAGTGGAACAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* **
48828 AGCAGATTTAAGTCATCAGTTCTA
196 AGCAGATTTAAGCCATCAGGCCTA
48852 TCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
48873 TAGGTTGAAG
Statistics
Matches: 220, Mismatches: 20, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
219 91 0.41
220 129 0.59
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (219 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTGATCTTACCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATTC
TGTCACCCTAAAAGTAGTGGAACAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
AGCAGATTTAAGCCATCAGGCCTA
Found at i:48997 original size:132 final size:132
Alignment explanation
Indices: 48633--50114 Score: 2018
Period size: 132 Copynumber: 11.2 Consensus size: 132
48623 ATTAGGCCTA
* * * *
48633 TCACCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATTTTATCTTCCCAATATAGTGGAGAA
1 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
48698 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGGTTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
48763 TG
131 TG
* * *
48765 TTACCCTAA-AAGTAGTGGAACAGATCGAAGATGGTGAATCTTATCTTCCCAATAGAGTGGAGAA
1 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
48829 GCAGATTTAAGTCATCAGTTCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
48894 TG
131 TG
* * * * * ** *
48896 TCACCCTAAGAAGTAGTGCAGCGGATCGAAGATGGTGAATCATATCTTCTCAAGATTGTGGGGAA
1 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * * * *
48961 GCAGATGTAAGCCATTAGTCCAATCTCTCTAAGCAGTAGTGGAGTAGGTTGAGGATTGTAGATTT
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
49026 TG
131 TG
* * * *
49028 TCACCCTAAGCAGTAGTGGAGTAGAACGAAGATGGTGAATCTTATCTTCCCAGTACAGTGGAGAA
1 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
49093 GCAGATTTAAGCCATTAGTCCTATCATCCTAAGTAGTATTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
49158 TG
131 TG
* * * * * * *
49160 TCACCCTAAGCAGTAGTGCAGCGGATCGAAGATGGTGAATCATATCTTCTCAAGATAGTGGAGAA
1 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * * * * *
49225 GAAGATGTAAGCCATTAGTCCAATCTCCCTAAGCAATAGTGGAGTAGGTTTAGGATTGTAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
49290 TG
131 TG
* * * * * * *
49292 TCACCCTAAGCAGTAGTGGAGTACATCGAAGATCGTGAATCTTATCTTTCCAATATAGTGGAGCA
1 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
49357 GCAGGTTTAAGCCATTACTCCTATCACCCTCAGCAGTAGGGGAGTAGGCTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
49422 TG
131 TG
* *
49424 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATACAGTGGAGAA
1 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
49489 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCATTAGTGGAGTAGGTTGAAGGTTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
49554 TG
131 TG
* * *
49556 TCACCCTAA-AAGTAGTGGCGCAGATCGAAGATCGTGAATCTTATCTTCCCAATAGAGTGGAGAA
1 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
** * * *
49620 GCAGATTTAAGTTATTAGACCTATCACCCTAAGAAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
49685 TG
131 TG
* *
49687 TCACCCTAAGCAA-TAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGT
1 TCACCCTAAG-AAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * *
49751 AGCAGATTTAAGCAATTAGTCCTATCACCCTCAGTAGTAGTGGAGTAGGCTGAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
49816 CTG
130 CTG
* * *
49819 TCAGCCTAAGCAA-TAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAAA
1 TCACCCTAAG-AAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * * * * *
49883 AGCAGATTTAAGCCGTTAGTCCTATCTCCCTCAGAAATAGTGGAGTAGGCTGAACATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
49948 CTG
130 CTG
* * * *
49951 TCACTCTAAGATGTAGTGCAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATACAGTGGAGAA
1 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * *
50016 GTAGATTTAAGCCATTAGTCCTACCACCCTAAGCACTGGTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
*
50081 TC
131 TG
*
50083 TCACCCTAAGTAGTAGTGGAGCAGATCGAAGA
1 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGA
50115 NNNNNNNNNN
Statistics
Matches: 1180, Mismatches: 166, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
131 240 0.20
132 938 0.79
133 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (132 bp):
TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
TG
Found at i:49890 original size:791 final size:791
Alignment explanation
Indices: 48633--50114 Score: 2272
Period size: 791 Copynumber: 1.9 Consensus size: 791
48623 ATTAGGCCTA
* * *
48633 TCACCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATTTTATCTTCCCAATATAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
*
48698 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGGTTACAGATTC
66 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGGTTACAGATTC
* *
48763 TGTTACCCTAAAAGTAGTGGAACAGATCGAAGATGGTGAATCTTATCTTCCCAATAGAGTGGAGA
131 TGTCACCCTAAAAGTAGTGGAACAGATCGAAGATCGTGAATCTTATCTTCCCAATAGAGTGGAGA
** * *
48828 AGCAGATTTAAGTCATCAGTTCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
196 AGCAGATTTAAGTCATCAGACCTATCACCCTAAGAAGTAGTGGAGTAAGTTGAAGATTGCAGATT
* ** *
48893 CTGTCACCCTAAGAAGTAGTGCAGCGGATCGAAGATGGTGAATCATATCTTCTCAAGATTGTGGG
261 CTGTCACCCTAAGAAGTAGTGCAGCGGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTGGA
* * * * * *
48958 GAAGCAGATGTAAGCCATTAGTCCAATCTCTCTAAGCAGTAGTGGAGTAGGTTGAGGATTGTAGA
326 GAAGCAGATGTAAGCAATTAGTCCAATCACCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGA
* * * *
49023 TTTTGTCACCCTAAGCAGTAGTGGAGTAGAACGAAGATGGTGAATCTTATCTTCCCAGTACAGTG
391 TTCTGTCACCCTAAGCAATAGTGGAGGAGAACGAAGATGGTGAATCTTATCTTCCCAATACAGTG
* * * * * *
49088 GAGAAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAGTAGTATTGGAGTAGGTTGAAGATTGC
456 GAAAAGCAGATTTAAGCCATTAGTCCTATC-TCCCTAAGAAATAGTGGAGTAGGCTGAACATTGC
*
49152 AGATTCTGTCACCCTAAGCA-GTAGTGCAGCGGATCGAAGATGGTGAATCATATC-TTCTCAAGA
520 AGATTCTGTCACCCTAAG-ATGTAGTGCAGCAGATCGAAGATGGTGAATCATATCTTTC-CAAGA
* * * * *
49215 TAGTGGAGAAGAAGATGTAAGCCATTAGTCCAATCTCCCTAAGCAATAGTGGAGTAGGTTTAGGA
583 CAGTGGAGAAGAAGATGTAAGCCATTAGTCCAACCACCCTAAGCAATAGTGGAGTAGGTTGAAGA
* * *
49280 TTGTAGATTCTGTCACCCTAAGCAGTAGTGGAGTACATCGAAGATCGTGAATCTTATCTTTCCAA
648 TTGCAGATTCTCTCACCCTAAGCAGTAGTGGAGCACATCGAAGATCGTGAATCTTATCTTTCCAA
49345 TATAGTGGAGCAGCAGGTTTAAGCCATTACTCCTATCACCCTCAGCAGTAGGGGAGTAGGCTGAA
713 TATAGTGGAGCAGCAGGTTTAAGCCATTACTCCTATCACCCTCAGCAGTAGGGGAGTAGGCTGAA
49410 GATTGCAGATTCTG
778 GATTGCAGATTCTG
*
49424 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
49489 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCATTAGTGGAGTAGGTTGAAGGTTGCAGATTC
66 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGGTTACAGATTC
**
49554 TGTCACCCTAAAAGTAGTGGCGCAGATCGAAGATCGTGAATCTTATCTTCCCAATAGAGTGGAGA
131 TGTCACCCTAAAAGTAGTGGAACAGATCGAAGATCGTGAATCTTATCTTCCCAATAGAGTGGAGA
* *
49619 AGCAGATTTAAGTTATTAGACCTATCACCCTAAGAAGTAGTGGAGTAAGTTGAAGATTGCAGATT
196 AGCAGATTTAAGTCATCAGACCTATCACCCTAAGAAGTAGTGGAGTAAGTTGAAGATTGCAGATT
* * *
49684 CTGTCACCCTAAGCAA-TAGTGGAG-GAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
261 CTGTCACCCTAAG-AAGTAGTGCAGCG-GATCGAAGATGGTGAATCATATCTTCCCAAGACAGTG
* * * * *
49747 GAGTAGCAGATTTAAGCAATTAGTCCTATCACCCTCAGTAGTAGTGGAGTAGGCTGAAGATTGCA
324 GAGAAGCAGATGTAAGCAATTAGTCCAATCACCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCA
* *
49812 GATTCTGTCAGCCTAAGCAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
389 GATTCTGTCACCCTAAGCAATAGTGGAGGAGAACGAAGATGGTGAATCTTATCTTCCCAATACAG
* *
49877 TGGAAAAGCAGATTTAAGCCGTTAGTCCTATCTCCCTCAGAAATAGTGGAGTAGGCTGAACATTG
454 TGGAAAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGAAATAGTGGAGTAGGCTGAACATTG
* * *
49942 CAGATTCTGTCACTCTAAGATGTAGTGCAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATAC
519 CAGATTCTGTCACCCTAAGATGTAGTGCAGCAGATCGAAGATGGTGAATCATATCTTTCCAAGAC
* * * * *
50007 AGTGGAGAAGTAGATTTAAGCCATTAGTCCTACCACCCTAAGCACTGGTGGAGTAGGTTGAAGAT
584 AGTGGAGAAGAAGATGTAAGCCATTAGTCCAACCACCCTAAGCAATAGTGGAGTAGGTTGAAGAT
* *
50072 TGCAGATTCTCTCACCCTAAGTAGTAGTGGAGCAGATCGAAGA
649 TGCAGATTCTCTCACCCTAAGCAGTAGTGGAGCACATCGAAGA
50115 NNNNNNNNNN
Statistics
Matches: 618, Mismatches: 68, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
790 3 0.00
791 610 0.99
792 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (791 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGGTTACAGATTC
TGTCACCCTAAAAGTAGTGGAACAGATCGAAGATCGTGAATCTTATCTTCCCAATAGAGTGGAGA
AGCAGATTTAAGTCATCAGACCTATCACCCTAAGAAGTAGTGGAGTAAGTTGAAGATTGCAGATT
CTGTCACCCTAAGAAGTAGTGCAGCGGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTGGA
GAAGCAGATGTAAGCAATTAGTCCAATCACCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGA
TTCTGTCACCCTAAGCAATAGTGGAGGAGAACGAAGATGGTGAATCTTATCTTCCCAATACAGTG
GAAAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGAAATAGTGGAGTAGGCTGAACATTGCA
GATTCTGTCACCCTAAGATGTAGTGCAGCAGATCGAAGATGGTGAATCATATCTTTCCAAGACAG
TGGAGAAGAAGATGTAAGCCATTAGTCCAACCACCCTAAGCAATAGTGGAGTAGGTTGAAGATTG
CAGATTCTCTCACCCTAAGCAGTAGTGGAGCACATCGAAGATCGTGAATCTTATCTTTCCAATAT
AGTGGAGCAGCAGGTTTAAGCCATTACTCCTATCACCCTCAGCAGTAGGGGAGTAGGCTGAAGAT
TGCAGATTCTG
Found at i:51523 original size:132 final size:132
Alignment explanation
Indices: 50521--51523 Score: 1176
Period size: 132 Copynumber: 7.6 Consensus size: 132
50511 NNNNNNNNNN
* * * * * * * * *
50521 TATCTTCTCAAGATAGTGGAGAAGAAGATGTAAGCCACTAGTCCAATCTCCCTAAGCAATAGTGG
1 TATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGG
* * * * * *
50586 AGTAGGTTTAGGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTACATCGACGATCGTGAAT
66 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
50651 CT
131 CT
* ** * * * *
50653 TATCTTCCCAATATAGTGGATCAGCAGATTTAAGCCATTACTCCTATCACCCTCACCAGTAGGGG
1 TATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGG
* *
50718 AGTAGGCTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAAGATGGTGAA
66 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG-AAGATGGTGAA
50783 TCT
130 TCT
* * * *
50786 TATCTTCCTAATACAGTGGAGAAGCAGA-TTAAGCCATTAGTCCTATCTCCCAAAAGCCA-TGGT
1 TATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCC-TAAG-CAGTAGT
* * ** * * *
50849 GG-GCTTGG-TGAAGATTGCAGATTCTGTCACCTTAAATAGTAGTGAAGCAGATCGAATATGATG
64 GGAG-TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG
*
50912 AAACT
128 AATCT
* *
50917 TATTTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGG
1 TATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGG
* * *
50982 AGTCGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTCGAGTAGATCGAAGATGGTGAAT
66 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
*
51047 CA
131 CT
* * *
51049 TATCTTCCCAAGACAGTGGTGAAGCAGATTTAAGCCATTGGTCCTATCACCCTAAG-ACGTAGTG
1 TATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCA-GTAGTG
* * * * *
51113 GAGTCGGTTAAAGATTACAGATTCTGTCACCCTAAGTAGTAGTGTAGCAGATCGAAGATGGTGAA
65 GAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAA
51178 TCT
130 TCT
* * * * * *
51181 TATCTTCTCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCAATCTCCCTAAGCTGTAGTGG
1 TATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGG
* * * *
51246 AGTAGGCTGAAGATTGCAGACTCTGTCACCCTAAGGAGTAGTGGAGTAGATCGAAGATGGTGAAT
66 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
51311 CT
131 CT
* * * * * *
51313 TATCTTCCAAATACAGTGAAGAAGTAGATTTAAGCCATTAGTCCTATC-TCCTAGAGCTGTAGCG
1 TATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTA-AGCAGTAGTG
* * * * * **
51377 GAGTAGGCTAAAGATTGCAGATTTTGTCACCCTAAACA-TGAGTGGAGCAGATCGAATATCATGA
65 GAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGT-AGTGGAGCAGATCGAAGATGGTGA
51441 ATCT
129 ATCT
* * * *
51445 TATCTTCCCTATACAGTGGAGAAGCAGATTTAAGCCATTAGGCCGATCACCCAAAGCAGTAGTGG
1 TATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGG
*
51510 A-TCAGATTGAAGAT
66 AGT-AGGTTGAAGAT
51524 GGTGAATCTT
Statistics
Matches: 742, Mismatches: 115, Indels: 28
0.84 0.13 0.03
Matches are distributed among these distances:
130 2 0.00
131 54 0.07
132 637 0.86
133 47 0.06
134 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
TATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGG
AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
CT
Found at i:51531 original size:88 final size:88
Alignment explanation
Indices: 51438--51598 Score: 259
Period size: 88 Copynumber: 1.8 Consensus size: 88
51428 TCGAATATCA
* * *
51438 TGAATCTTATCTTCCCTATACAGTGGAGAAGCAGATTTAAGCCATTAGGCCGATCACCCAAAGCA
1 TGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATCAGGCCGATCACCCAAAGAA
51503 GTAGTGGATCAGATTGAAGATGG
66 GTAGTGGATCAGATTGAAGATGG
* * **
51526 TGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATCAGTCCTATCACCCTCAGAA
1 TGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATCAGGCCGATCACCCAAAGAA
51591 GTAGTGGA
66 GTAGTGGA
51599 GTAGGCTGAA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 66 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (88 bp):
TGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATCAGGCCGATCACCCAAAGAA
GTAGTGGATCAGATTGAAGATGG
Found at i:51664 original size:220 final size:218
Alignment explanation
Indices: 51271--51949 Score: 1004
Period size: 220 Copynumber: 3.1 Consensus size: 218
51261 GCAGACTCTG
* * *
51271 TCACCCTAAGGAGTAGTGGAGT-AGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGAAGA
1 TCACCCTAAGCAGTAGTGGA-TCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * * *
51335 AGTAGATTTAAGCCATTAGTCCTATC-TCCTAGAGCTGTAGCGGAGTAGGCTAAAGATTGCAGAT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAGA--AGTAGTGGAGTAGGCTGAAGATTGCAGAT
* * ** *
51399 TTTGTCACCCTAAACA-TGAGTGGAGCAGATCGAATATCATGAATCTTATCTTCCCTATACAGTG
128 TCTGTCACCCT-AACAGT-AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
*
51463 GAGAAGCAGATTTAAGCCATTAGGCCGA
191 GAGAAGCAGATTTAAGCCATTAGGCCTA
* *
51491 TCACCCAAAGCAGTAGTGGATCAGATTGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
*
51556 GCAGATTTAAGCCATCAGTCCTATCACCCTCAGAAGTAGTGGAGTAGGCTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCT-AGAAGTAGTGGAGTAGGCTGAAGATTGCAGATTC
51621 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
130 TGTCACCCTAA-CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
51686 AAGCAGATTTAAGCCATTAGGCCTA
194 AAGCAGATTTAAGCCATTAGGCCTA
*
51711 TCACCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATTTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * *
51776 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGGTTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCT-AGAAGTAGTGGAGTAGGCTGAAGATTGCAGATTC
* * * *
51841 TGTCACCCTAAAAGTTGTGGCGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAGAGTGGAGA
130 TGTCACCCTAACAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* *
51906 AGCAGATTTAAGTCATTAGTCCTA
195 AGCAGATTTAAGCCATTAGGCCTA
*
51930 TCACCCTAAGAAGTAGTGGA
1 TCACCCTAAGCAGTAGTGGA
51950 GTAAGTTAAA
Statistics
Matches: 421, Mismatches: 33, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
219 94 0.22
220 320 0.76
221 4 0.01
222 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (218 bp):
TCACCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAGAAGTAGTGGAGTAGGCTGAAGATTGCAGATTCT
GTCACCCTAACAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGGCCTA
Found at i:51693 original size:45 final size:45
Alignment explanation
Indices: 51642--51781 Score: 110
Period size: 45 Copynumber: 3.2 Consensus size: 45
51632 GCAGTAGTGG
51642 AGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
1 AGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
** ** * * * * * *
51687 AGCAGATTTAAGCCAT--T-AGGCCTATC-ACCCTAA-GCAGTAGTGG
1 AGCAGATCGAAG--ATGGTGAATCTTATCTTCCC-AATACAGTGGAGA
* *
51730 ATCAGATCGAAGATGGTGAATTTTATCTTCCCAATACAGTGGAGA
1 AGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
51775 AGCAGAT
1 AGCAGAT
51782 TTAAGCCATT
Statistics
Matches: 64, Mismatches: 23, Indels: 16
0.62 0.22 0.16
Matches are distributed among these distances:
41 2 0.03
43 19 0.30
44 15 0.23
45 26 0.41
47 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25
Consensus pattern (45 bp):
AGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
Found at i:51722 original size:88 final size:88
Alignment explanation
Indices: 51623--51819 Score: 367
Period size: 88 Copynumber: 2.2 Consensus size: 88
51613 GCAGATTCTG
51623 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
51688 GCAGATTTAAGCCATTAGGCCTA
66 GCAGATTTAAGCCATTAGGCCTA
* *
51711 TCACCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATTTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
*
51776 GCAGATTTAAGCCATTAGTCCTA
66 GCAGATTTAAGCCATTAGGCCTA
51799 TCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
51820 TAGGTTGAAG
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 105 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (88 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGGCCTA
Found at i:51743 original size:132 final size:132
Alignment explanation
Indices: 51491--51730 Score: 417
Period size: 132 Copynumber: 1.8 Consensus size: 132
51481 ATTAGGCCGA
* *
51491 TCACCCAAAGCAGTAGTGGATCAGATTGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCAAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
51556 GCAGATTTAAGCCATCAGTCCTATCACCCTCAGAAGTAGTGGAGTAGGCTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATCAGGCCTATCACCCTAAGAAGTAGTGGAGTAGGCTGAAGATTGCAGATTC
51621 TG
131 TG
*
51623 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCAAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
51688 GCAGATTTAAGCCATTAGGCCTATCACCCTAAGCAGTAGTGGA
66 GCAGATTTAAGCCATCAGGCCTATCACCCTAAGAAGTAGTGGA
51731 TCAGATCGAA
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 101 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (132 bp):
TCACCCAAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATCAGGCCTATCACCCTAAGAAGTAGTGGAGTAGGCTGAAGATTGCAGATTC
TG
Found at i:52048 original size:132 final size:132
Alignment explanation
Indices: 51711--52685 Score: 1357
Period size: 132 Copynumber: 7.4 Consensus size: 132
51701 ATTAGGCCTA
* * *
51711 TCACCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATTTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
51776 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGGTTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
51841 TG
131 TG
* * *
51843 TCACCCTAA--AAGTTGTGGCGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAGAGTGGAGA
1 TCACCCTAAGCAA-TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * *
51906 AGCAGATTTAAGTCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAAGTTAAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
51971 CTG
130 CTG
*
51974 TCACCCTAAGCAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
52039 GCAGATTTAAGCAATTAGTCCTATCACCCTCAGCAGTAGCGGAGTAGGCTGAAGATTGTAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
52104 TG
131 TG
* *
52106 TCAGCCTAAGCAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
52171 GCAGATTTCAGCCCTTAGTCCTATCTCCCTCAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
52236 TG
131 TG
* * *
52238 TCACCCAAAG-ATGTAGTGCAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
1 TCACCCTAAGCA-ATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * * *
52302 AGTAGATTTAAGCCATTAGTCCTACCACCCTAAGTACTGGTGGAGTAGGTTGAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
*
52367 CTC
130 CTG
* * * * *
52370 TCACCCTAAGTAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCTAATATAGTGGAGAA
1 TCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
** * * *
52435 GTTGATTTAAGCCATTAGTCCTATCACCCTAAGCAGGAGTGGAGTAGGTTGAAGATAGCGGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
52500 TG
131 TG
* * *
52502 TCACCCTAAGGAGTAGTGGAGCAAATCGAAGATGGTGAATCTTATCTTCCCAAATACAGTGGAGA
1 TCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCC-AATACAGTGGAGA
* * * * *
52567 AGTAGATTTAAGCCATTAGTCCTATCTCCC-AGAGCAGTAGCGGAGTAGGCTAAAGATTGCAGAT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTA-AGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
*
52631 TTTG
129 TCTG
* * **
52635 TCACCCTAAAC-ATGAGTGGAGCAGATCGAATATCATGAATCTTATCTTCCC
1 TCACCCTAAGCAAT-AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
52686 TA
Statistics
Matches: 752, Mismatches: 83, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
130 1 0.00
131 118 0.16
132 519 0.69
133 114 0.15
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
TCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
TG
Found at i:52660 original size:967 final size:965
Alignment explanation
Indices: 50743--52490 Score: 2422
Period size: 967 Copynumber: 1.8 Consensus size: 965
50733 GCAGATTCTG
* *
50743 TCACCTTAAGCAGTAGTGGAGCAGATCGAAAGATGGTGAATCTTATCTTCCTAATACAGTGGAGA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * *
50808 AGCAGATTAAGCCATTAGTCCTATCTCCCAAAAGCCATGGTGGGCTTGGTGAAGATTGCAGATTC
66 AGCAGATTAAGCCATTAGTCCTATCACCCAAAAGCCATAGTGGGCTAGGTGAAGATTACAGATTC
* * *
50873 TGTCACCTTAAATAGTAGTGAAGCAGATCGAATATGATGAAACTTATTTTCCCAATACAGTGGAG
131 TGTCACCCTAAATAGTAGTGAAGCAGATCGAAGATGATGAAACTTATCTTCCCAATACAGTGGAG
* ** *
50938 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTCGGTTGAAGATTGCAGAT
196 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAATGGAGTAAGTTAAAGATTGCAGAT
* *
51003 TCTGTCACCCTAAGCAGTAGTCGAGTAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTGG
261 TCTGTCACCCTAAGCAATAGTCGAGGAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTGG
* * * * * *
51068 TGAAGCAGATTTAAGCCATTGGTCCTATCACCCTAAGACGTAGTGGAGTCGGTTAAAGATTACAG
326 AGAAGCAGATTTAAGCAATTAGTCCTATCACCCTAAGACGTAGCGGAGTAGGCTAAAGATTACAG
* * * * *
51133 ATTCTGTCACCCTAAGTAGTAGTGTAGCAGATCGAAGATGGTGAATCTTATCTTCTCAAGATAGT
391 ATTCTGTCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGT
*
51198 GGAGAAGCAGATTTAAGCCATTAGTCCAATCTCCCTAAGCTGTAGTGGAGTAGGCTGAAGATTGC
456 GGAGAAGCAGATTTAAGCCATTAGTCCAATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGC
* * *
51263 AGACTCTGTCACCCTAAGGAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCAAATACA
521 AGACTCTGTCACCCTAAAGAGTAGTGCAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACA
* *
51328 GTGAAGAAGTAGATTTAAGCCATTAGTCCTATCTCCTAGAGCTGTAGCGGAGTAGGCTAAAGATT
586 GTGAAGAAGTAGATTTAAGCCATTAGTCCTACCCCCTAGAGCTG-AGCGGAGTAGGCTAAAGATT
* * *
51393 GCAGATTTTGTCACCCTAAACATGAGTGGAGCAGATCGAATATCATGAATCTTATCTTCCCTATA
650 GCAGATTCTCTCACCCTAAACATGAGTGGAGCAGATCGAAGATCATGAATCTTATCTTCCCTATA
*
51458 CAGTGGAGAAGCAGATTTAAGCCATTAGGCCGATCACCCAAAGCAGTAGTGGATCAGATTGAAGA
715 CAGTGGAGAAGCAGATTTAAGCCATTAGGCCGATCACCCAAAGCAGGAGTGGATCAGATTGAAGA
* * * ** * **
51523 TGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATCAGTCCTATCACCCTCA
780 TGGTGAATCTTATCTACCCAATACAGTAGAGAAGCAAATCGAAGCCATCAATCCTATCACCCAAA
* * * * * * *
51588 GAAGTAGTGGAGTAGGCTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAA
845 GAAGTAGAGAAGTAGACTGAAGATT-CAGATCCTATCACCCTAAGCAGTAGCGGAGCAGATCAAA
*
51653 GATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGGCCTA
909 GAT-GTGAATCTTATCTACCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGGCCTA
* *
51711 TCACCCTAAGCAGTAGTGGATCAGATCG-AAGATGGTGAATTTTATCTTCCCAATACAGTGGAGA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* *
51775 AGCAGATTTAAGCCATTAGTCCTATCACCC-TAAG-CAGTAGTGGAG-TAGGTTGAAGGTTACAG
66 AGCAGA-TTAAGCCATTAGTCCTATCACCCAAAAGCCA-TAGTGG-GCTAGG-TGAAGATTACAG
* ** * * *
51837 ATTCTGTCACCCTAAA-AGTTGTGGCGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAGAGT
127 ATTCTGTCACCCTAAATAGTAGTGAAGCAGATCGAAGATGATGAAACTTATCTTCCCAATACAGT
* *
51901 GGAGAAGCAGATTTAAGTCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAAGTTAAAGATTGC
192 GGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAATGGAGTAAGTTAAAGATTGC
* * *
51966 AGATTCTGTCACCCTAAGCAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
257 AGATTCTGTCACCCTAAGCAATAGTCGAGGAGATCGAAGATGGTGAATCATATCTTCCCAAGACA
* *
52031 GTGGAGAAGCAGATTTAAGCAATTAGTCCTATCACCCTCAG-CAGTAGCGGAGTAGGCTGAAGAT
322 GTGGAGAAGCAGATTTAAGCAATTAGTCCTATCACCCTAAGAC-GTAGCGGAGTAGGCTAAAGAT
** * * *
52095 TGTAGATTCTGTCAGCCTAAGCAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAAT
386 TACAGATTCTGTCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAG
* * * *
52160 ACAGTGGAGAAGCAGATTTCAGCCCTTAGTCCTATCTCCCTCAGCAGTAGTGGAGTAGGCTGAAG
451 ACAGTGGAGAAGCAGATTTAAGCCATTAGTCCAATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAG
* *
52225 ATTGCAGATTCTGTCACCC-AAAGATGTAGTGCAGCAGATCGAAGATGGTGAATCTTATCTTCCC
516 ATTGCAGACTCTGTCACCCTAAAGA-GTAGTGCAGCAGATCGAAGATGGTGAATCTTATCTTCCA
* * *
52289 AATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTACCACCCTA-AGTACTG-GTGGAGTAGGT
580 AATACAGTGAAGAAGTAGATTTAAGCCATTAGTCCTACC-CCCTAGAG--CTGAGCGGAGTAGGC
* ** **
52352 TGAAGATTGCAGATTCTCTCACCCTAAGTA-GTAGTGGAGCAGATCGAAGATTGTGAATCTTATC
642 TAAAGATTGCAGATTCTCTCACCCTAAACATG-AGTGGAGCAGATCGAAGATCATGAATCTTATC
* ** * * *
52416 TT-CCTAATATAGTGGAGAAGTTGATTTAAGCCATTAGTCCTATCACCCTAAGCAGGAGTGGAGT
706 TTCCCT-ATACAGTGGAGAAGCAGATTTAAGCCATTAGGCCGATCACCCAAAGCAGGAGTGGA-T
*
52480 -AGGTTGAAGAT
769 CAGATTGAAGAT
52491 AGCGGATTCT
Statistics
Matches: 689, Mismatches: 79, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
966 11 0.02
967 596 0.87
968 79 0.11
969 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (965 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
AGCAGATTAAGCCATTAGTCCTATCACCCAAAAGCCATAGTGGGCTAGGTGAAGATTACAGATTC
TGTCACCCTAAATAGTAGTGAAGCAGATCGAAGATGATGAAACTTATCTTCCCAATACAGTGGAG
AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAATGGAGTAAGTTAAAGATTGCAGAT
TCTGTCACCCTAAGCAATAGTCGAGGAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTGG
AGAAGCAGATTTAAGCAATTAGTCCTATCACCCTAAGACGTAGCGGAGTAGGCTAAAGATTACAG
ATTCTGTCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGT
GGAGAAGCAGATTTAAGCCATTAGTCCAATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGC
AGACTCTGTCACCCTAAAGAGTAGTGCAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACA
GTGAAGAAGTAGATTTAAGCCATTAGTCCTACCCCCTAGAGCTGAGCGGAGTAGGCTAAAGATTG
CAGATTCTCTCACCCTAAACATGAGTGGAGCAGATCGAAGATCATGAATCTTATCTTCCCTATAC
AGTGGAGAAGCAGATTTAAGCCATTAGGCCGATCACCCAAAGCAGGAGTGGATCAGATTGAAGAT
GGTGAATCTTATCTACCCAATACAGTAGAGAAGCAAATCGAAGCCATCAATCCTATCACCCAAAG
AAGTAGAGAAGTAGACTGAAGATTCAGATCCTATCACCCTAAGCAGTAGCGGAGCAGATCAAAGA
TGTGAATCTTATCTACCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGGCCTA
Done.