Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_556 ID=scaffold_556-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5886
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.33

Warning! 129 characters in sequence are not A, C, G, or T


Found at i:5855 original size:2 final size:2

Alignment explanation


    Indices: 5848--5886  Score: 78
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       5838 AGTTCAAATC

                                                                      
       5848 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   37  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.