Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_575 ID=scaffold_575-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5571
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:646 original size:18 final size:19

Alignment explanation


    Indices: 614--651  Score: 51
    Period size: 18  Copynumber: 2.1  Consensus size: 19

        604 GTTTTAATTA

                               
        614 TGTCTAAATTCATTA-ATG
          1 TGTCTAAATTCATTACATG

                   *  *        
        632 TGTCTAATTTTATTACATG
          1 TGTCTAAATTCATTACATG

             
        651 T
          1 T

        652 TTTAATGATG


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  18   13  0.76
  19    4  0.24

ACGTcount: A:0.29, C:0.11, G:0.11, T:0.50


Consensus pattern (19 bp):   
TGTCTAAATTCATTACATG
Done.