Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_582 ID=scaffold_582-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6266
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.29

Warning! 760 characters in sequence are not A, C, G, or T


Found at i:4459 original size:45 final size:44

Alignment explanation


    Indices: 4389--4540  Score: 180
    Period size: 45  Copynumber: 3.4  Consensus size: 44

       4379 ATATGCCGAC

                *                            *           
       4389 TACTATTATTGTTACTGTTACCGATTCGGCACTCTGTGTGTCGAA
          1 TACTGTTATTGTTACTGTTA-CGATTCGGCACTTTGTGTGTCGAA

                   *                                     
       4434 TACTGTTGTTGTTACTGTTATCGATTCGGCACTTTGTGTGTCGAA
          1 TACTGTTATTGTTACTGTTA-CGATTCGGCACTTTGTGTGTCGAA

                    **            *    *                  
       4479 TACTGTTACCGTTACTGTTACAAATTCAGCACTTTGTGTGTTC-AA
          1 TACTGTTATTGTTACTGTTAC-GATTCGGCACTTTGTGTG-TCGAA

                    * *      
       4524 TACTGTTACTATTACTG
          1 TACTGTTATTGTTACTG

       4541 CTACCGTTAC


Statistics
Matches: 94,  Mismatches: 11, Indels: 4
        0.86            0.10        0.04

Matches are distributed among these distances:
  44    1  0.01
  45   91  0.97
  46    2  0.02

ACGTcount: A:0.20, C:0.18, G:0.19, T:0.42


Consensus pattern (44 bp):   
TACTGTTATTGTTACTGTTACGATTCGGCACTTTGTGTGTCGAA

Done.