Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_589 ID=scaffold_589-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6845
ACGTcount: A:0.23, C:0.13, G:0.16, T:0.28

Warning! 1410 characters in sequence are not A, C, G, or T


Found at i:6075 original size:31 final size:31

Alignment explanation


    Indices: 6039--6100  Score: 124
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       6029 AGATAATTTT

                                           
       6039 AAAGAGTTTTATTAGGATTCAATTACTCTTG
          1 AAAGAGTTTTATTAGGATTCAATTACTCTTG

                                           
       6070 AAAGAGTTTTATTAGGATTCAATTACTCTTG
          1 AAAGAGTTTTATTAGGATTCAATTACTCTTG

       6101 TAATTTTTCT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42


Consensus pattern (31 bp):   
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Done.