Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_596 ID=scaffold_596-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5788
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.30

Warning! 414 characters in sequence are not A, C, G, or T


Found at i:3347 original size:3 final size:3

Alignment explanation


    Indices: 3339--3382  Score: 79
    Period size: 3  Copynumber: 14.7  Consensus size: 3

       3329 ATACATGGTT

                                                      *               
       3339 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATC ATA ATA ATA AT
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT

       3383 GATGCAATAT


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   39  1.00

ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34


Consensus pattern (3 bp):   
ATA

Done.