Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_608 ID=scaffold_608-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5372
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:3091 original size:17 final size:19

Alignment explanation


    Indices: 3069--3107  Score: 55
    Period size: 17  Copynumber: 2.2  Consensus size: 19

       3059 TAAATACTTC

                               
       3069 TAAAATAA-AATTA-ACAA
          1 TAAAATAAGAATTATACAA

                      *        
       3086 TAAAATAAGAGTTATACAA
          1 TAAAATAAGAATTATACAA

               
       3105 TAA
          1 TAA

       3108 CAACATAATA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  17    8  0.42
  18    4  0.21
  19    7  0.37

ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26


Consensus pattern (19 bp):   
TAAAATAAGAATTATACAA
Done.