Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_609 ID=scaffold_609-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5365
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.38

Warning! 101 characters in sequence are not A, C, G, or T


Found at i:4349 original size:6 final size:6

Alignment explanation


    Indices: 4340--4372  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

       4330 TCAGTAATCG

                 *                                
       4340 GTAACG GTAACA GTAACA GTAACA GTAACA GTA
          1 GTAACA GTAACA GTAACA GTAACA GTAACA GTA

       4373 TTCAACACAC


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.45, C:0.15, G:0.21, T:0.18


Consensus pattern (6 bp):   
GTAACA

Done.