Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_616 ID=scaffold_616-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6927
ACGTcount: A:0.25, C:0.10, G:0.11, T:0.28

Warning! 1715 characters in sequence are not A, C, G, or T


Found at i:6777 original size:20 final size:20

Alignment explanation


    Indices: 6750--6794  Score: 58
    Period size: 20  Copynumber: 2.3  Consensus size: 20

       6740 TAAACATAAA

                                
       6750 TTAT-TAAAT-TTATTTTAT
          1 TTATATAAATATTATTTTAT

                          *      
       6768 TATATATAAATATTTTTTTAT
          1 T-TATATAAATATTATTTTAT

                  
       6789 TTATAT
          1 TTATAT

       6795 TTACTTATTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 4
        0.82            0.04        0.14

Matches are distributed among these distances:
  18    1  0.04
  19    3  0.13
  20   10  0.43
  21    9  0.39

ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64


Consensus pattern (20 bp):   
TTATATAAATATTATTTTAT
Done.