Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 110 of 168
Found at i:32377513 original size:20 final size:19
Alignment explanation
Indices: 32377471--32377515 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
32377461 TTAAAGCTTT
*
32377471 ATTTTAATATTTTTTATAC
1 ATTTTAATATTTTTTACAC
32377490 ATTTTAAT-TTTATTATACAC
1 ATTTTAATATTT-TT-TACAC
32377510 ATTTTA
1 ATTTTA
32377516 TTACCTTGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 3 0.13
19 10 0.43
20 10 0.43
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTTAATATTTTTTACAC
Found at i:32389553 original size:3 final size:3
Alignment explanation
Indices: 32389545--32389578 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
32389535 TTCGATCTAA
32389545 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
32389579 TTTATGTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:32391876 original size:46 final size:45
Alignment explanation
Indices: 32391823--32392148 Score: 359
Period size: 46 Copynumber: 7.6 Consensus size: 45
32391813 TTTGAGTACT
*
32391823 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
* *
32391869 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
32391915 TCTGATCAAGTGAAAAAGTGATAA---GT-GC-TA--T--ACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
32391951 TCTGATCAAGTGAAAAAGTGATAA---GT-GC-TA--T--ACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
* * * *
32391987 TCTGATCAAGTGAGAAAGTGATAAGTGTTGGCCTTAGTTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
* *
32392033 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACTCTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
* *
32392079 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
* *
32392124 TCTGATC-AG-GGACAAGTGATAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTG
32392149 ATCATATGTA
Statistics
Matches: 253, Mismatches: 17, Indels: 23
0.86 0.06 0.08
Matches are distributed among these distances:
36 64 0.25
38 1 0.00
39 1 0.00
40 3 0.01
41 1 0.00
42 4 0.02
43 15 0.06
44 3 0.01
45 19 0.08
46 142 0.56
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:32391951 original size:36 final size:36
Alignment explanation
Indices: 32391905--32392013 Score: 200
Period size: 36 Copynumber: 3.0 Consensus size: 36
32391895 GGTAGCTTTA
*
32391905 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
32391941 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
32391977 GCTATACTTATCTGATCAAGTGAGAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
32392013 G
1 G
32392014 TTGGCCTTAG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 71 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (36 bp):
GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:32391961 original size:21 final size:20
Alignment explanation
Indices: 32391933--32391998 Score: 52
Period size: 21 Copynumber: 3.5 Consensus size: 20
32391923 AGTGAAAAAG
32391933 TGATAAGTGCTATACTTATC
1 TGATAAGTGCTATACTTATC
* **
32391953 TGATCAAGTG--A-A--AAAG
1 TGAT-AAGTGCTATACTTATC
32391969 TGATAAGTGCTATACTTATC
1 TGATAAGTGCTATACTTATC
32391989 TGATCAAGTG
1 TGAT-AAGTG
32391999 AGAAAGTGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 13
0.63 0.12 0.25
Matches are distributed among these distances:
15 5 0.15
16 5 0.15
17 1 0.03
18 2 0.06
19 1 0.03
20 9 0.27
21 10 0.30
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
TGATAAGTGCTATACTTATC
Found at i:32409917 original size:317 final size:317
Alignment explanation
Indices: 32409285--32409962 Score: 879
Period size: 317 Copynumber: 2.1 Consensus size: 317
32409275 CAACGGTTTT
* *
32409285 CTAATAGGG-AGGCTTTATGCTTATTGGATAATTGTGGCATTGCCGATGTTGTCCATTTAGGTTG
1 CTAATAGGGCA-GCTTTATGCTTATTCGATAATTGTGGCATTGCCGATGTTGTCCATTTAGGTTC
* **
32409349 TTACATTTTATTAAAGAGAGAACATATATTCAGTAATGGAGTCCTTCTGTGGTGGGGGAAGGGCA
65 TTACATTTTATTAAAGAAAGAACATATATTCAGTAATGGAGTCCTTCCATGGTGGGGGAAGGGCA
* * * *
32409414 AGGGCAGTCTACTCGTTGTCAGGTTGCAATAAGAAATGGAAACTAGTCATTGGAGGGAACACAAG
130 AGGGCAGTCTACTCCTTGTCAGGTTGAAACAAGAAACGGAAACTAGTCATTGGAGGGAACACAAG
* * * **
32409479 GCTAGAGGAGAGTGGCTCTGCATAAGAGCCTTACTCTATAGGGTCATTAGAGTGCAGCGGCTAGC
195 GCTAGAGGAGAGTGGCTCCGCATAAGAGCCTTACTCTACAGGGACATTAGAGTGCAGCAACTAGC
* *
32409544 ACTTTGAAGCCCGCTGAAAAACCGATGTGCTCTACTAGCGCAATGGTTTGAAGCTTTG
260 ACTTTGAAGCCAGCTGAAAAACCGATGTGCTCTACTAGCGCAATGGTTTCAAGCTTTG
* * * * * *
32409602 CTGATAGGGCAGCTTAATGCTTATTCAATAATTGTGGTATTGCTGGGAT-TT-TCTATTTAGGTT
1 CTAATAGGGCAGCTTTATGCTTATTCGATAATTGTGGCATTGC--CGATGTTGTCCATTTAGGTT
32409665 CTTACATTTTATTAAAGAAAGAACATATATTCAGTAATGGAGTCCTTCCATGGTGGGGGAAGGGC
64 CTTACATTTTATTAAAGAAAGAACATATATTCAGTAATGGAGTCCTTCCATGGTGGGGGAAGGGC
** * *
32409730 AAGGGCAG-C-A-TCCTTGTTGGGTTGAAACAAGAAACGGAAACTAGTCGTTGGAGGGAACACGA
129 AAGGGCAGTCTACTCCTTGTCAGGTTGAAACAAGAAACGGAAACTAGTCATTGGAGGGAACACAA
* * * * *
32409792 GGCTTGTGGA-ATGTGGTTCCGCATAAGAGCCTTACTCTACAGGGACGTTAGTGTGCTA-CAACT
194 GGCTAGAGGAGA-GTGGCTCCGCATAAGAGCCTTACTCTACAGGGACATTAGAGTGC-AGCAACT
* * **
32409855 AGCACTTTGAAGCCAGCTGAAAAACTGATGCTTGCTATTGGT-GCGCAATGGTTTTCAAGCTTTG
257 AGCACTTTGAAGCCAGCTGAAAAACCGATG--TGCT-CTACTAGCGCAATGG-TTTCAAGCTTTG
* *
32409919 CTAATAGGGCAGCTTTATGCTTATTTGATAATTGTGCCATTGCC
1 CTAATAGGGCAGCTTTATGCTTATTCGATAATTGTGGCATTGCC
32409963 AGCATTTTCC
Statistics
Matches: 310, Mismatches: 42, Indels: 20
0.83 0.11 0.05
Matches are distributed among these distances:
313 1 0.00
314 121 0.39
315 2 0.01
316 14 0.05
317 166 0.54
318 3 0.01
319 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (317 bp):
CTAATAGGGCAGCTTTATGCTTATTCGATAATTGTGGCATTGCCGATGTTGTCCATTTAGGTTCT
TACATTTTATTAAAGAAAGAACATATATTCAGTAATGGAGTCCTTCCATGGTGGGGGAAGGGCAA
GGGCAGTCTACTCCTTGTCAGGTTGAAACAAGAAACGGAAACTAGTCATTGGAGGGAACACAAGG
CTAGAGGAGAGTGGCTCCGCATAAGAGCCTTACTCTACAGGGACATTAGAGTGCAGCAACTAGCA
CTTTGAAGCCAGCTGAAAAACCGATGTGCTCTACTAGCGCAATGGTTTCAAGCTTTG
Found at i:32411592 original size:15 final size:14
Alignment explanation
Indices: 32411568--32411615 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
32411558 TAAGTTATGG
*
32411568 ATTTAATTTTTTAT
1 ATTTTATTTTTTAT
*
32411582 ATTTTATTTTTATCT
1 ATTTTATTTTT-TAT
*
32411597 ATTTTAGTTTTTAT
1 ATTTTATTTTTTAT
32411611 ATTTT
1 ATTTT
32411616 TTGAATTGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (14 bp):
ATTTTATTTTTTAT
Found at i:32411616 original size:15 final size:14
Alignment explanation
Indices: 32411575--32411616 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
32411565 TGGATTTAAT
32411575 TTTTTATA-TTTTA
1 TTTTTATATTTTTA
*
32411588 TTTTTATCTATTTTA
1 TTTTTATAT-TTTTA
32411603 GTTTTTATATTTTT
1 -TTTTTATATTTTT
32411617 TGAATTGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 7 0.29
15 9 0.38
16 8 0.33
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.76
Consensus pattern (14 bp):
TTTTTATATTTTTA
Found at i:32420717 original size:19 final size:19
Alignment explanation
Indices: 32420695--32420733 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
32420685 TTTTTACGTA
*
32420695 TTTTAAAAATTTATAGATT
1 TTTTAAAAATCTATAGATT
* *
32420714 TTTTTAGAATCTATAGATT
1 TTTTAAAAATCTATAGATT
32420733 T
1 T
32420734 GACTTTTTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.54
Consensus pattern (19 bp):
TTTTAAAAATCTATAGATT
Found at i:32423780 original size:110 final size:111
Alignment explanation
Indices: 32423391--32423943 Score: 885
Period size: 110 Copynumber: 5.0 Consensus size: 111
32423381 GAAATTCGAG
* * * * *
32423391 AGGATATTTCGCTATTCGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
32423456 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAATTTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTAGAAAA-TTTTTAAA
* * *
32423503 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTC
1 AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* * * *
32423568 GAATTTCTCAAACACAAAACATTGCCTTATTTAAAAAAATTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTAGAAAATTTTTAAA
32423614 AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
32423679 AAATTTCCCAAACGCAAAACATTGCCTTATTT-GAAAATTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTAGAAAATTTTTAAA
32423724 AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
32423789 AAATTTCCCAAACGCAAAACATTGCCTTATTT-GAAAATTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTAGAAAATTTTTAAA
*
32423834 AGGATATTTAGTCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* * *
32423899 GAATTTCCCAAAAGCGAAATATTGCCTTATTTAGGAAAAGTTTTT
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTA-GAAAA-TTTTT
32423944 GATGCATGGT
Statistics
Matches: 414, Mismatches: 24, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
110 213 0.51
111 98 0.24
112 98 0.24
113 5 0.01
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (111 bp):
AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCCAAACGCAAAACATTGCCTTATTTAGAAAATTTTTAAA
Found at i:32425421 original size:129 final size:129
Alignment explanation
Indices: 32425235--32425473 Score: 275
Period size: 129 Copynumber: 1.9 Consensus size: 129
32425225 TATCTTCAAC
* * ***
32425235 CTGCTCCACTGCGACTTCAGGGAGATAAGGTTTGATCCAATTCGACCTACTGCAACTTCAGAG-G
1 CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATCCAATTCGACCTACTGCAACTTCAGAGAG
* * * *
32425299 TATATGATTCATCGTTTTCATCCACTCCACTGCAACTTCAGGGAGACACGATTGGTATTTTTCGT
66 -ATAAGATCCATCATTTTAATCCACTCCACTGCAACTTCAGGGAGACACGATTGGTATTTTTCGT
* * * * * *
32425364 CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGA-TCTACTCTGCTGTAACTTTAGAGA
1 CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATCCAATTCGAC-CTACTGCAACTTCAGAGA
* * * *
32425428 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGA
65 GATAAGATCCATCATTTTAATCCACTCCACTGCAACTTCAGGGAGA
32425474 TAGGATTGTC
Statistics
Matches: 89, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
128 4 0.04
129 84 0.94
130 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (129 bp):
CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATCCAATTCGACCTACTGCAACTTCAGAGAG
ATAAGATCCATCATTTTAATCCACTCCACTGCAACTTCAGGGAGACACGATTGGTATTTTTCGT
Found at i:32425510 original size:41 final size:43
Alignment explanation
Indices: 32425446--32427446 Score: 497
Period size: 44 Copynumber: 45.9 Consensus size: 43
32425436 CCTTTATTTT
* * *
32425446 AATCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-T-TGTCTTC
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACTCTGGCTTC
* * *
32425487 GATTTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-CTCTGGCTTC
* * *
32425531 AATCTGCTCCACTGTAATCTTAGGGAGATAATA-TCTGAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTG----GCTTC
** * * ** *
32425577 GGTCTACTCCACTGTAACCTCAGGGAGATAAGAC-CT-AATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* * * ** *** *
32425618 GATCTACTCTGA-TGTAA-CTTCAGAAAGATAAGA-TCCTTTATTTT
1 AATCTGCTC-CACTGTAATC-TCAGGGAGATAAGACT-C-TGGCTTC
* * * *
32425662 AATCCGCTCCACTGTAATCTCAGGGAGATAGGA-TAGTGTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACT-CTGGCTTC
* * * *
32425705 GATCTGCTCCGCTGTAATCTCAAGAAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-CTCTGGCTTC
* * * * *
32425749 AATCTGCTCCACTATAACCTCAAGGAGATAAG-GTCTGAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTG----GCTTC
** * * * *
32425795 GGTCTACTCCACTGTAACCTCAGGGAGATAAGAC-CT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* * * * *** *
32425836 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACT-C-TGGCTTC
* * * * *
32425880 AATCCGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACT-CTGGCTTC
** * *
32425924 AATCTGCTCCGTTGTAATCTCAGGGAGATAAGA-TATGAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTG----GCTTC
** * * * * *
32425970 GGTCTACTCCACTGTAACCTCAGGAAGATAAGAC-CT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* * * * * *** *
32426011 GATCTACTCTACTGTAA-CTTCAGAGAGATGAGA-TCCTTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACT-C-TGGCTTC
* * * * *
32426055 AATCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTG
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACT-CTGGCTTC
* * *
32426098 GATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-CTCTGGCTTC
* *
32426142 AATCTGCTCCACTGTAACCTC-GAGGAGATAAGA-TCTGAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAG-GGAGATAAGACTCTG----GCTTC
** * * * * *
32426188 GGTCTACTCCACTGTAACCTCAGGGAGGTAAGAC-CT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* * ** * *** *
32426229 GATCTACTCTGCTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACT-C-TGGCTTC
* * * * **
32426273 AATCCGCTCCACTGTAATCTCAGTGAGATAGGATTACTAACTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACT-CTGGCTTC
* *
32426317 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGA-TCTGAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTG----GCTTC
** * * * *
32426363 GGTCTACTCCACTGTAACCTCAGGGAGATAAGAC-CT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* ** ** * *** *
32426404 GATCAACTCTGCTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACT-C-TGGCTTC
* * * *
32426448 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACT-CTGGCTTC
* * **
32426492 AATCTGCTACACTGTAATCTCAGAGAGATAAGA-TCTGAAATTATTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTG----GCTTC
** * * *
32426538 GGTCTACTCCACTGTAACCTCAGGGAGATAAGAC-CT-GATGT-
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCT-TC
* ** ** * * *** *
32426579 GATCAACTCTGCTGTAA-CTTCAGAGAGATAAGATCTTTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGA-CTCTGGCTTC
* * * *
32426623 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACT-CTGGCTTC
* **
32426667 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGA-TCTAAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCT----GGCTTC
** * * * * * *
32426713 GGTCTACTCCACTGTAACCTCAGGGAGGTAAGGC-CT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* * ** * * *** *
32426754 GATCTACTCTGCTGTAA-CTTCAGAGAGATAATA-TCCTTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACT-C-TGGCTTC
* * *
32426798 AATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACT-CTGGCTTC
**
32426842 AATCTGCTCCGA-TGTAATCTCAGGGAGATAAGA-TCTGAAATTC
1 AATCTGCTCC-ACTGTAATCTCAGGGAGATAAGACTCTG-GCTTC
* * * * *
32426885 -TTCGGTGTACTCCACTGTAACCTCGGGGAGATAAGAC-CT-GATGC
1 AATC--TG--CTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* ** ** * *** *
32426929 GATCAACTCTGCTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACT-C-TGGCTTC
* * * * * *
32426973 AATCCGCTCTACTGTAATCTCGGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACT-CTGGCTTC
* **
32427017 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGA-TCTAAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCT----GGCTTC
** * * * *
32427063 TGTCTACTCCACTGTAACCTCAGGGAGATAAGAC-CT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* ** ** * *** *
32427104 GATCAACTCTGCTGTAA-CTTCAGTGAGATAAGA-TCCTTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACT-C-TGGCTTC
* * * *
32427148 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACT-CTGGCTTC
* *
32427192 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGA-TCTGAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTG----GCTTC
** * * * *
32427238 TGTCTACTCCACTGTAACCTCAGGGAGATAAGAC-CT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* * ** ** *** *
32427279 GATCTACTCTGCTGTAA-CTTCAAAGAGATAAGA-TCCTTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACT-C-TGGCTTC
** * * * *
32427323 AATCCACTCCACTGTAATCTCAGGGAGATAGGATTGTGTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* *
32427366 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-CTCTGGCTTC
* *
32427410 AATCTACTCCACTGTAACCTCAGGGAGATAAGA-TCTG
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTG
32427447 AAATATTCGC
Statistics
Matches: 1435, Mismatches: 389, Indels: 271
0.68 0.19 0.13
Matches are distributed among these distances:
40 10 0.01
41 296 0.21
42 44 0.03
43 115 0.08
44 620 0.43
45 28 0.02
46 321 0.22
47 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
Found at i:32425808 original size:218 final size:217
Alignment explanation
Indices: 32425362--32425957 Score: 948
Period size: 218 Copynumber: 2.7 Consensus size: 217
32425352 GGTATTTTTC
* * * *
32425362 GTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTTAGAG
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGATGTAACTTCAGAG
32425427 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGAT-TGTCTTCGAT
66 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC-TCAGGGAGATAGGATATGTCTTCGAT
* * * * *
32425490 TTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAATCTTAGG
130 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAACCTCAAG
*
32425555 GAGATAATATCTGAAATTCTTCG
195 GAGATAAGATCTGAAATTCTTCG
* *
32425578 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTGATGTAACTTCAGAA
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGATGTAACTTCAGAG
32425643 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATAGTGTCTTCGAT
66 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATA-TGTCTTCGAT
* *
32425708 CTGCTCCGCTGTAATCTCAAGAAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAACCTCAAG
130 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAACCTCAAG
*
32425773 GAGATAAGGTCTGAAATTCTTCG
195 GAGATAAGATCTGAAATTCTTCG
32425796 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCT-ACTGTAACTTCAGA
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGA-TGTAACTTCAGA
*
32425860 GAGATAAGATCCTTTATTTTAATCCGCTCCACTATAATCTCAGGGAGATAGGATTACTAG-CTTC
65 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGA-TA-T-GTCTTC
* *
32425924 AATCTGCTCCGTTGTAATCTCAGGGAGATAAGAT
127 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
32425958 ATGAAATTCT
Statistics
Matches: 351, Mismatches: 23, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
216 110 0.31
217 2 0.01
218 201 0.57
219 37 0.11
220 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (217 bp):
GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGATGTAACTTCAGAG
AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATATGTCTTCGATC
TGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAACCTCAAGG
AGATAAGATCTGAAATTCTTCG
Found at i:32425905 original size:85 final size:85
Alignment explanation
Indices: 32425801--32426084 Score: 293
Period size: 85 Copynumber: 3.3 Consensus size: 85
32425791 CTTCGGTCTA
32425801 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
32425866 AGATCCTTTATTTTAATCCG
66 AGATCCTTTATTTTAATCCG
* * * * * * * * *** *
32425886 CTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGTTGTAA-TCTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGA--CCT-GATGCGATCTACTCTACTGTAACT-TCAGAGA
* ** ** **
32425950 GATAAGAT-ATGAAATTCTTCGGTCTA
62 GATAAGATCCT-TTATT-TT-AATCCG
* *
32425976 CTCCACTGTAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATG
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
32426041 AGATCCTTTATTTTAATCCG
66 AGATCCTTTATTTTAATCCG
*
32426061 CTCCACTGTAACTTCAGGGAGATA
1 CTCCACTGTAACCTCAGGGAGATA
32426085 GGATAGTGTC
Statistics
Matches: 148, Mismatches: 42, Indels: 18
0.71 0.20 0.09
Matches are distributed among these distances:
85 48 0.32
86 2 0.01
87 35 0.24
88 36 0.24
89 2 0.01
90 25 0.17
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (85 bp):
CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCCTTTATTTTAATCCG
Found at i:32425933 original size:175 final size:175
Alignment explanation
Indices: 32425744--32426088 Score: 584
Period size: 175 Copynumber: 2.0 Consensus size: 175
32425734 AAGATCTCTG
* *
32425744 GCTTCAATCTGCTCCACTATAACCTCAAGGAGATAAGGTCTGAAATTCTTCGGTCTACTCCACTG
1 GCTTCAATCTGCTCCACTATAACCTCAAGGAGATAAGATATGAAATTCTTCGGTCTACTCCACTG
*
32425809 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
66 TAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
32425874 TATTTTAATCCGCTCCACTATAA-TCTCAGGGAGATAGGATTACTA
131 TATTTTAATCCGCTCCACTATAACT-TCAGGGAGATAGGATTACTA
** * * *
32425919 GCTTCAATCTGCTCCGTTGTAATCTCAGGGAGATAAGATATGAAATTCTTCGGTCTACTCCACTG
1 GCTTCAATCTGCTCCACTATAACCTCAAGGAGATAAGATATGAAATTCTTCGGTCTACTCCACTG
*
32425984 TAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTT
66 TAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
*
32426049 TATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGAT
131 TATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGAT
32426089 AGTGTCTTGG
Statistics
Matches: 159, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
175 158 0.99
176 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (175 bp):
GCTTCAATCTGCTCCACTATAACCTCAAGGAGATAAGATATGAAATTCTTCGGTCTACTCCACTG
TAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
TATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATTACTA
Found at i:32426129 original size:393 final size:393
Alignment explanation
Indices: 32425492--32426527 Score: 1720
Period size: 393 Copynumber: 2.6 Consensus size: 393
32425482 TCTTCGATTT
* * * * *
32425492 GCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAATCTTAGGG
1 GCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGG
* *
32425556 AGATAATATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGAT
65 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
*
32425621 CTACTCTGA-TGTAACTTCAGAAAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAG
130 CTACTCT-ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAG
* *
32425685 GGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAAGAAGATAAGATCTCTGGCTTCA
194 GGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
*
32425750 ATCTGCTCCACTATAACCTCAAGGAGATAAGGTCTGAAATTCTTCGGTCTACTCCACTGTAACCT
259 ATCTGCTCCACTATAACCTCAAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCT
32425815 CAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
324 CAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
32425880 AATCC
389 AATCC
* *
32425885 GCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGTTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
* *
32425950 GATAAGATATGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGCGATC
66 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
*
32426015 TACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGG
131 TACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC-TCAGG
* *
32426079 GAGATAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAA
195 GAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAA
* *
32426144 TCTGCTCCACTGTAACCTCGAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
260 TCTGCTCCACTATAACCTCAAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* *
32426209 AGGGAGGTAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
325 AGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
32426274 ATCC
390 ATCC
* *
32426278 GCTCCACTGTAATCTCAGTGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
32426343 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
66 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
* *
32426408 AACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
131 TACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
* * * * *
32426473 AGATAGGATTACTAG-CTTCAATCTGCTACACTGTAATCTCAGAGAGATAAGATCT
196 AGATAGGA-TAGT-GTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
32426528 GAAATTATTC
Statistics
Matches: 599, Mismatches: 38, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
392 3 0.01
393 557 0.93
394 38 0.06
395 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (393 bp):
GCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
TACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
AGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAAT
CTGCTCCACTATAACCTCAAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCA
GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
TCC
Found at i:32426171 original size:218 final size:220
Alignment explanation
Indices: 32425894--32427270 Score: 783
Period size: 219 Copynumber: 6.3 Consensus size: 220
32425884 CGCTCCACTA
* ** *
32425894 TAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCGTTGTAATCTCAGGGAGATAAGAT
1 TAATCTCAGGGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT
32425958 ATGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTAC
66 ATGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTAC
*
32426023 TGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGG
131 TGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC-TCAGGGAGATAGG
* ** **
32426087 A-TAGTGTCTTGGATCTACTCCGCTG
195 ATTACTAACTTCAATCTACTCCGCTG
*
32426112 TAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTC-GAGGAGATAAGA
1 TAATCTCAGGGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAACCTCAG-GGAGATAAGA
* * * *
32426175 TCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGGTAAGACCTGATGCGATCTACTCTG
65 TATGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTA
*
32426240 CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGTGAGATAGG
130 CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGG
*
32426305 ATTACTAACTTCAATCTGCTCCGCTG
195 ATTACTAACTTCAATCTACTCCGCTG
* * ** *
32426331 TAATCTCAGGGAGATAAGATCTGA-AATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAG
1 TAATCTCAGGGAGATAAGATCT-ACTA-GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAG
** * * * ** * * *** **
32426395 ACCTG--A---TGCGATCAACTCTGCTGTAACTTCA-GAGAGATAAGATCCTTTATTTTAATCCG
64 ATATGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGA-AGATAAGA-CC-TGA-TGCGATCTA
* * * * * * * * *
32426454 CTCCACTGTAA-TCTCAGGGAGATAGGAT--TACTAGCTTCAATCTGCTACACTGTAATCTCAGA
125 CTCTACTGTAACT-TCAGAGAGATAAGATCCT-TTA-TTTTAATCCGCTCCACTGTAATCTCAGG
* * * ** *
32426516 GAGATAAGATCTGAAATTA-TTCGGTCTACTCCACTG
187 GAGATAGGAT-T--ACTAACTTCAATCTACTCCGCTG
* * * * *
32426552 TAACCTCAGGGAGATAAGACCTGA-T-G-TGATCAA-CT-CT--GCTGTAACTTCAGAGAGATAA
1 TAATCTCAGGGAGATAAGATCT-ACTAGCT--TCAATCTGCTCCACTGTAACCTCAGGGAGATAA
* *** ** ** * * * * * * * *
32426610 GATCTTTTATT-TT-AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
63 GATATGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGAAGATAAGA--CCT-GATGCGATCTA
** * ** ** ** *
32426673 CTCCGCTGTAA-TCTCAGGGAGATAAGAT-CTAAAATTCTTCGGTCTACTCCACTGTAACCTCAG
125 CTCTACTGTAACT-TCAGAGAGATAAGATCCT-TTATT-TT-AATCCGCTCCACTGTAATCTCAG
* * * * * *
32426736 GGAGGTAAGG---CCTGA-TGCGATCTACTCTGCTG
186 GGAGAT-AGGATTACTAACTTCAATCTACTCCGCTG
* * * * * * *
32426768 TAA-CTTCAGAGAGATAATATCCT-TTA-TTTTAATCTGCTCCACTGTAATCTCAGGGAGATAGG
1 TAATC-TCAGGGAGATAAGAT-CTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAG
* * ** * * * * * *
32426830 AT-T--ACTAGCTTCAATCTGCTCCGA-TGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGT
64 ATATGAAAT-TCTTCGGTCTACTCC-ACTGTAACCTCAGGAAGATAAGACCTG--A---TGCGAT
* * * * * * *** ** **
32426891 GTACTCCACTGTAACCTCGGGGAGATAAGA-CC-TGA-TGCGATCAACTCTGCTGTAA-CTTCAG
122 CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC-TCAG
* * * * * * ** **
32426952 AGAGATAAGA-TCCTTTATTTTAATCCGCTCTACTG
186 GGAGATAGGATTAC-TAACTTCAATCTACTCCGCTG
* * * *
32426987 TAATCTCGGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
1 TAATCTCAGGGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT
* * * * * *
32427051 CTAAAATTCTTCTGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCAACTCTGC
66 ATGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTAC
*
32427116 TGTAACTTCAGTGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGA
131 TGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGA
* *
32427181 TTACTAGCTTCAATCTGCTCCGCTG
196 TTACTAACTTCAATCTACTCCGCTG
* * ** *
32427206 TAATCTCAGGGAGATAAGATCTGA-AATTCTTCTGTCTACTCCACTGTAACCTCAGGGAGATAAG
1 TAATCTCAGGGAGATAAGATCT-ACTA-GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAG
32427270 A
64 A
32427271 CCTGATGCGA
Statistics
Matches: 893, Mismatches: 195, Indels: 139
0.73 0.16 0.11
Matches are distributed among these distances:
215 8 0.01
216 131 0.15
217 16 0.02
218 196 0.22
219 326 0.37
220 20 0.02
221 188 0.21
222 8 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (220 bp):
TAATCTCAGGGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT
ATGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTAC
TGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGA
TTACTAACTTCAATCTACTCCGCTG
Found at i:32426323 original size:175 final size:175
Alignment explanation
Indices: 32426104--32427447 Score: 2243
Period size: 175 Copynumber: 7.7 Consensus size: 175
32426094 CTTGGATCTA
* * * * *
32426104 CTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTC-GAGG
1 CTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCGCTGTAATCTCAG-GG
*
32426167 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGGTAAGACCTGATGCGAT
64 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
*
32426232 CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
129 CAACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
* *
32426279 CTCCACTGTAATCTCAGTGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
32426344 ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCA
66 ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCA
32426409 ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
131 ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
* * *
32426454 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTACACTGTAATCTCAGAGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
* *
32426519 ATAAGATCTGAAATTATTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGTGATCA
66 ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCA
*
32426584 ACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCG
131 ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
32426629 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
* * * *
32426694 ATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGGTAAGGCCTGATGCGATCT
66 ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCA
* *
32426759 ACTCTGCTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCTG
131 ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
*
32426804 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGATGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
* *
32426869 ATAAGATCTGAAATTCTTCGGTGTACTCCACTGTAACCTCGGGGAGATAAGACCTGATGCGATCA
66 ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCA
32426934 ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
131 ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
* *
32426979 CTCTACTGTAATCTCGGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
* *
32427044 ATAAGATCTAAAATTCTTCTGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCA
66 ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCA
*
32427109 ACTCTGCTGTAACTTCAGTGAGATAAGATCCTTTATTTTAATCCG
131 ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
32427154 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
* *
32427219 ATAAGATCTGAAATTCTTCTGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
66 ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCA
* *
32427284 ACTCTGCTGTAACTTCAAAGAGATAAGATCCTTTATTTTAATCCA
131 ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
* *
32427329 CTCCACTGTAATCTCAGGGAGATAGGATT-GT-GTCTTCGATCTGCTCCGCTGTAATCTCAGGGA
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAG-CTTCAATCTGCTCCGCTGTAATCTCAGGGA
* * ** *
32427392 GATAAGATCT---CTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGA
65 GATAAGATCTGAAAT-TCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
32427448 AATATTCGCT
Statistics
Matches: 1105, Mismatches: 60, Indels: 11
0.94 0.05 0.01
Matches are distributed among these distances:
171 1 0.00
172 39 0.04
173 1 0.00
174 41 0.04
175 1022 0.92
176 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (175 bp):
CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCA
ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
Found at i:32427415 original size:131 final size:129
Alignment explanation
Indices: 32425755--32427444 Score: 423
Period size: 131 Copynumber: 12.9 Consensus size: 129
32425745 CTTCAATCTG
* * * * *
32425755 CTCCACTATAACCTCAAGGAGATAAGGTCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG--ATTCTTCTGTCTACTCCACTGTAACCTCAGGG
* * * *
32425820 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCC
64 AGATAAGACCTGATGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATCCTTTATTTTAATCC
*
32425885 G
129 A
* * * ** * ** *
32425886 CTCCACTATAATCTCAGGGAGATAGGAT-T-ACTAGCTTCAATCTGCTCCGTTGTAATCTCAGGG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGA-T-TCTTCTGTCTACTCCACTGTAACCTCAGGG
** * ** * * *
32425949 AGATAAGATATGAAATTCTTCGGTCTACTCCACTGTAACCTC-AGGAAGATAAGA-CC-TGA-TG
64 AGATAAGACCTG--A---TGCAATCTACTCCACTGTAACCTCAAAG-AGATAAGATCCTTTATTT
** *
32426010 CGATCTA
123 TAATCCA
* * * * ** ** *
32426017 CTCTACTGTAA-CTTCAGAGAGATGAGATCCTTTATT-TT-AATCCGCTCCACTGTAACTTCAGG
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-C-TGATTCTTCTGTCTACTCCACTGTAACCTCAGG
* ** * * * * ** *** *
32426079 GAGATAGGATAGTGTCTTG-GATCTACTCCGCTGTAATCTCAGGGAGATAAGAT-CTCTGGCTTC
63 GAGATAAGA-CCTG--ATGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATCCT-TTATTTT
**
32426142 AATCTG
124 AATCCA
* *
32426148 CTCCACTGTAACCTC-GAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGG
1 CTCCACTGTAATCTCAG-GGAGATAAGATCTG--ATTCTTCTGTCTACTCCACTGTAACCTCAGG
* * ** * *
32426212 GAGGTAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC
63 GAGATAAGACCTGATGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATCCTTTATTTTAATC
*
32426277 CG
128 CA
* * * ** * * *
32426279 CTCCACTGTAATCTCAGTGAGATAGGAT-T-ACTAACTTCAATCTGCTCCGCTGTAATCTCAGGG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGA-T-TCTTCTGTCTACTCCACTGTAACCTCAGGG
* * ** ** * **
32426342 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CC-TGA-TGC
64 AGATAAGACCTG--A---TGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATCCTTTATTTT
* *
32426404 GATCAA
124 AATCCA
** * * ** ** *
32426410 CTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTTATT-TT-AATCCGCTCCACTGTAATCTCAGG
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-C-TGATTCTTCTGTCTACTCCACTGTAACCTCAGG
* * * * * * * * **
32426472 GAGATAGGATTACTAGCTTCAATCTGCTACACTGTAATCTCAGAGAGATAAGAT-CTGAAATTAT
63 GAGATAAGA--CCT-GATGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATCCT-TTATT-T
** *
32426536 TCGGTCTA
123 T-AATCCA
* * * * ** * *
32426544 CTCCACTGTAACCTCAGGGAGATAAGACCTGA----TGTGATCAACTCTGCTGTAACTTCAGAGA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGATTCTTCTG-TCTACTCCACTGTAACCTCAGGGA
* * ** ** * ** * * * *
32426605 GATAAGATCTTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGAT--TACTAGCTTCA
65 GATAAGA-C-CTGA-TGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATCCT-TTA-TTTTA
**
32426668 ATCTG
125 ATCCA
* * *
32426673 CTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGG
1 CTCCACTGTAATCTCAGGGAGATAAGATCT--GATTCTTCTGTCTACTCCACTGTAACCTCAGGG
* * * ** * * * *
32426738 AGGTAAGGCCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCT
64 AGATAAGACCTGATGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATCCTTTATTTTAATCC
*
32426803 G
129 A
* * ** * *
32426804 CTCCACTGTAATCTCAGGGAGATAGGAT-T-ACTAGCTTCAATCTGCTCCGA-TGTAATCTCAGG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGA-T-TCTTCTGTCTACTCC-ACTGTAACCTCAGG
* * * *** *
32426866 GAGATAAGATCTGAAATTC-TTCGGTGTACTCCACTGTAACCTCGGGGAGATAAGA-CC-TGA-T
63 GAGATAAGACCTG--ATGCAATC----TACTCCACTGTAACCTCAAAGAGATAAGATCCTTTATT
*** *
32426927 GCGATCAA
122 TTAATCCA
** * * ** ** * * *
32426935 CTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTTATT-TT-AATCCGCTCTACTGTAATCTCGGG
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-C-TGATTCTTCTGTCTACTCCACTGTAACCTCAGG
* * * * * * * ** **
32426997 GAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT-CTAAAATTCT
63 GAGATAAGA--CCT-GATGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATCCT-TTATT-T
** *
32427061 TCTGTCTA
123 T-AATCCA
* * * * ** * *
32427069 CTCCACTGTAACCTCAGGGAGATAAGACCTGA---TGC-GATCAACTCTGCTGTAACTTCAGTGA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGATTCTTCTG-TCTACTCCACTGTAACCTCAGGGA
* ** ** * ** * * * *
32427130 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGAT--TACTAGCTTCA
65 GATAAGA-CC-TGA-TGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATCCT-TTA-TTTTA
**
32427193 ATCTG
125 ATCCA
*
32427198 CTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCTGTCTACTCCACTGTAACCTCAGGG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG--ATTCTTCTGTCTACTCCACTGTAACCTCAGGG
* ** *
32427263 AGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAAAGAGATAAGATCCTTTATTTTAATCC
64 AGATAAGACCTGATGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATCCTTTATTTTAATCC
32427328 A
129 A
* * * *
32427329 CTCCACTGTAATCTCAGGGAGATAGGAT-TG-TGTCTTC-GATCTGCTCCGCTGTAATCTCAGGG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAT-TCTTCTG-TCTACTCCACTGTAACCTCAGGG
* * **
32427391 AGATAAGATCTCTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATC
64 AGATAAGA-C-CT-GATGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATC
32427445 TGAAATATTC
Statistics
Matches: 1155, Mismatches: 297, Indels: 214
0.69 0.18 0.13
Matches are distributed among these distances:
127 5 0.00
128 63 0.05
129 223 0.19
130 31 0.03
131 548 0.47
132 39 0.03
133 46 0.04
134 192 0.17
135 8 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (129 bp):
CTCCACTGTAATCTCAGGGAGATAAGATCTGATTCTTCTGTCTACTCCACTGTAACCTCAGGGAG
ATAAGACCTGATGCAATCTACTCCACTGTAACCTCAAAGAGATAAGATCCTTTATTTTAATCCA
Found at i:32429687 original size:70 final size:66
Alignment explanation
Indices: 32429612--32429756 Score: 170
Period size: 69 Copynumber: 2.1 Consensus size: 66
32429602 CTAGATTTCT
32429612 CTTTTTTCATTCTT-CTTTC-TTTTTCTCATTTTCATTTTGA-TCTTGATTTTGATTTTTTCTTC
1 CTTTTTT-ATT-TTACTTTCATTTTT-TCATTTTCATTTTGACT-TTGATTTTGA-TTTTTCTT-
32429674 TTTCTTC
60 TTTCTTC
* *
32429681 TTTTTTTATTTTGATTTTCGATTTTTTCATTTTCATTTTGACTTTGATTTTGATTTTTCTTTTTC
1 CTTTTTTATTTT-ACTTTC-ATTTTTTCATTTTCATTTTGACTTTGATTTTGATTTTTCTTTTTC
32429746 TTCC
64 TT-C
32429750 CTTTTTT
1 CTTTTTT
32429757 GATCTGAGCC
Statistics
Matches: 67, Mismatches: 3, Indels: 12
0.82 0.04 0.15
Matches are distributed among these distances:
67 2 0.03
68 9 0.13
69 25 0.37
70 25 0.37
71 6 0.09
ACGTcount: A:0.10, C:0.15, G:0.06, T:0.70
Consensus pattern (66 bp):
CTTTTTTATTTTACTTTCATTTTTTCATTTTCATTTTGACTTTGATTTTGATTTTTCTTTTTCTT
C
Found at i:32429757 original size:64 final size:69
Alignment explanation
Indices: 32429631--32429759 Score: 171
Period size: 70 Copynumber: 1.9 Consensus size: 69
32429621 TTCTTCTTTC
**
32429631 TTTTTCTCATTTTCATTTTGATCTTGATTTTGATTTTTTCTTCTTTCTTCTTTTTTTATTTTGAT
1 TTTTTCTCATTTTCATTTTGATCTTGATTTTGATTTTTTCTTCTTTCTTC--TCCTTATTTTGAT
32429696 TTTCGA
64 TTTCGA
32429702 TTTTT-TCATTTTCATTTTGA-CTTTGATTTTGA-TTTTTCTT-TTTCTTC-CCTT-TTTTGAT
1 TTTTTCTCATTTTCATTTTGATC-TTGATTTTGATTTTTTCTTCTTTCTTCTCCTTATTTTGAT
32429760 CTGAGCCTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
64 7 0.13
65 2 0.04
68 7 0.13
69 9 0.16
70 25 0.45
71 5 0.09
ACGTcount: A:0.11, C:0.13, G:0.07, T:0.69
Consensus pattern (69 bp):
TTTTTCTCATTTTCATTTTGATCTTGATTTTGATTTTTTCTTCTTTCTTCTCCTTATTTTGATTT
TCGA
Found at i:32433514 original size:110 final size:111
Alignment explanation
Indices: 32433121--32433562 Score: 699
Period size: 111 Copynumber: 4.0 Consensus size: 111
32433111 GAAATTCGAG
* * *
32433121 AGGATATTTCGCTATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
32433186 GAATTTCCCAAATGCAAAA-ATTGCCTTATTTCGAAAATTTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTAGAAAA-TTTTTAAA
* *
32433232 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
32433297 GAATTTCCCAAACGCAAAACATTGCCTTATTTAAAAAAATTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTAGAAAATTTTTAAA
*
32433343 AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
32433408 AAATTTCCCAAACGCAAAACATTGCCTTATTT-GAAAATTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTAGAAAATTTTTAAA
* * *
32433453 AGGATATTTAGTCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
32433518 GAATTTCCCAAACGCGAAATATTGCCTTATTTAGGAAAAGTTTTT
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTA-GAAAA-TTTTT
32433563 GATGCATGGT
Statistics
Matches: 308, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
110 103 0.33
111 179 0.58
112 21 0.07
113 5 0.02
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (111 bp):
AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCCAAACGCAAAACATTGCCTTATTTAGAAAATTTTTAAA
Found at i:32433531 original size:221 final size:222
Alignment explanation
Indices: 32433121--32433550 Score: 720
Period size: 221 Copynumber: 1.9 Consensus size: 222
32433111 GAAATTCGAG
* *
32433121 AGGATATTTCGCTATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* * *
32433186 GAATTTCCCAAATGCAAAAATTGCCTTATTTCGAAAATTTTTTAAAAGGATATTTGGCCATTTGG
66 AAATTTCCCAAACGCAAAAATTGCCTTATTTCGAAAATTTTTTAAAAGGATATTTAGCCATTTGG
32433251 TTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTCGAATTTCCCAAACGCAAAA
131 TTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTCGAATTTCCCAAACGCAAAA
32433316 CATTGCCTTATTTAAAAAAATTTTAAA
196 CATTGCCTTATTTAAAAAAATTTTAAA
* *
32433343 AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
32433408 AAATTTCCCAAACGCAAAACATTGCCTTATTT-GAAAA-TTTTTAAAAGGATATTTAGTCATTTG
66 AAATTTCCCAAACGCAAAA-ATTGCCTTATTTCGAAAATTTTTTAAAAGGATATTTAGCCATTTG
* * * *
32433471 GTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAACGCGAA
130 GTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTCGAATTTCCCAAACGCAAA
*
32433536 ATATTGCCTTATTTA
195 ACATTGCCTTATTTA
32433551 GGAAAAGTTT
Statistics
Matches: 194, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
221 99 0.51
222 83 0.43
223 12 0.06
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (222 bp):
AGGATATTTAGCCATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
AAATTTCCCAAACGCAAAAATTGCCTTATTTCGAAAATTTTTTAAAAGGATATTTAGCCATTTGG
TTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTCGAATTTCCCAAACGCAAAA
CATTGCCTTATTTAAAAAAATTTTAAA
Found at i:32433892 original size:25 final size:25
Alignment explanation
Indices: 32433823--32433884 Score: 99
Period size: 25 Copynumber: 2.4 Consensus size: 25
32433813 GTGTATGTAT
32433823 ATAAAAATATGAA-ATGTATAATAAAG
1 ATAAAAATAT-AAGA-GTATAATAAAG
32433849 ATAAAAATATAAGAGTATAATAAAG
1 ATAAAAATATAAGAGTATAATAAAG
32433874 ATAAAAATATA
1 ATAAAAATATA
32433885 CTCTTATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
25 24 0.69
26 11 0.31
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.26
Consensus pattern (25 bp):
ATAAAAATATAAGAGTATAATAAAG
Found at i:32437526 original size:16 final size:15
Alignment explanation
Indices: 32437505--32437534 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32437495 TTTAAACATT
32437505 TTTATATACTCTATTA
1 TTTATATACT-TATTA
32437521 TTTATATACTTATT
1 TTTATATACTTATT
32437535 GCACATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTATATACTTATTA
Found at i:32445154 original size:20 final size:21
Alignment explanation
Indices: 32445100--32445170 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 21
32445090 TCTTAGAAAC
32445100 TTTT-TAAAA-TTTTAACTTT
1 TTTTATAAAATTTTTAACTTT
* *
32445119 CTTTAT-ATATTCTTTAA-TTT
1 TTTTATAAAATT-TTTAACTTT
32445139 TTTTATAAAATTTTTATACTTT
1 TTTTATAAAATTTTTA-ACTTT
*
32445161 TTTTAAAAAA
1 TTTTATAAAA
32445171 AAATTAGAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
19 5 0.12
20 14 0.34
21 10 0.24
22 12 0.29
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTATAAAATTTTTAACTTT
Found at i:32447118 original size:31 final size:30
Alignment explanation
Indices: 32447073--32447140 Score: 82
Period size: 32 Copynumber: 2.2 Consensus size: 30
32447063 AATATATAAT
32447073 AAATATATTTTTTTTAATTTTAAATATTTTTA
1 AAATAT-TTTTTTTTAATTTT-AATATTTTTA
* **
32447105 AAATACTTTTTTTTTTATTTTTTTATTTTTA
1 AAATA-TTTTTTTTTAATTTTAATATTTTTA
32447136 AAATA
1 AAATA
32447141 AATTTTTGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 13 0.41
32 18 0.56
33 1 0.03
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (30 bp):
AAATATTTTTTTTTAATTTTAATATTTTTA
Found at i:32447147 original size:31 final size:32
Alignment explanation
Indices: 32447073--32447147 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 32
32447063 AATATATAAT
*
32447073 AAATATATTTTTTTTAATTTTAAATATTTTTA
1 AAATAAATTTTTTTTAATTTTAAATATTTTTA
** * **
32447105 AAATACTTTTTTTTTTATTTT-TTTATTTTTA
1 AAATAAATTTTTTTTAATTTTAAATATTTTTA
32447136 AAATAAATTTTT
1 AAATAAATTTTT
32447148 GGTGTTTATT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 18 0.50
32 18 0.50
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (32 bp):
AAATAAATTTTTTTTAATTTTAAATATTTTTA
Found at i:32450939 original size:32 final size:32
Alignment explanation
Indices: 32450903--32451018 Score: 128
Period size: 32 Copynumber: 3.6 Consensus size: 32
32450893 AAACGCGTGG
32450903 TTTTGTGAAATGATAACAAATATAAACTTTCA
1 TTTTGTGAAATGATAACAAATATAAACTTTCA
* *
32450935 TTTTGTGAAATGCTAATAAAT-TACAAC-TTCAA
1 TTTTGTGAAATGATAACAAATATA-AACTTTC-A
* * *
32450967 TTTTTGTAAAATGATAACAAATATCAACTTTAA
1 -TTTTGTGAAATGATAACAAATATAAACTTTCA
* *
32451000 TTTTGTTAAATGATGACAA
1 TTTTGTGAAATGATAACAA
32451019 TATCCCTCTA
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
31 5 0.07
32 40 0.57
33 22 0.31
34 3 0.04
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (32 bp):
TTTTGTGAAATGATAACAAATATAAACTTTCA
Found at i:32451826 original size:32 final size:32
Alignment explanation
Indices: 32451785--32451849 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
32451775 GGATCCTAAA
*
32451785 CCATGACATGTACTCCGGATCACATGCTAACT
1 CCATGACATGTACTCCGGAGCACATGCTAACT
*
32451817 CCATGACATGTACTCTGGAGCACATGCTAACT
1 CCATGACATGTACTCCGGAGCACATGCTAACT
32451849 C
1 C
32451850 TAGAACGATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.25
Consensus pattern (32 bp):
CCATGACATGTACTCCGGAGCACATGCTAACT
Found at i:32462148 original size:5 final size:6
Alignment explanation
Indices: 32462132--32462156 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32462122 GTAGAAATGC
32462132 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
32462157 GGGGGGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:32463427 original size:17 final size:17
Alignment explanation
Indices: 32463401--32463434 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32463391 TGATAATTAG
32463401 AAAAAAATAAATATATT
1 AAAAAAATAAATATATT
* *
32463418 AAAAATATAAATTTATT
1 AAAAAAATAAATATATT
32463435 TTGCTATCAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAAAAATAAATATATT
Found at i:32466651 original size:31 final size:31
Alignment explanation
Indices: 32466612--32466680 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
32466602 AATTAAAAGG
*
32466612 TGAA-AGATCGATTAAATAAACAAATGGATA
1 TGAATAGATCAATTAAATAAACAAATGGATA
* *
32466642 TGAATAGATCAATTGAATAAATAAATGGATA
1 TGAATAGATCAATTAAATAAACAAATGGATA
*
32466673 TAAATAGA
1 TGAATAGA
32466681 AGATAACCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 4 0.12
31 30 0.88
ACGTcount: A:0.54, C:0.04, G:0.16, T:0.26
Consensus pattern (31 bp):
TGAATAGATCAATTAAATAAACAAATGGATA
Found at i:32467044 original size:7 final size:7
Alignment explanation
Indices: 32467032--32467058 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
32467022 TTTTGGTATA
32467032 AATAAAT
1 AATAAAT
32467039 AATAAAT
1 AATAAAT
32467046 AATAAAT
1 AATAAAT
32467053 AATAAA
1 AATAAA
32467059 ATCTAATAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AATAAAT
Found at i:32472181 original size:13 final size:13
Alignment explanation
Indices: 32472163--32472189 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32472153 AAATCTAAAA
32472163 GTGTTCATGAGTC
1 GTGTTCATGAGTC
32472176 GTGTTCATGAGTC
1 GTGTTCATGAGTC
32472189 G
1 G
32472190 AGTTGAGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.33, T:0.37
Consensus pattern (13 bp):
GTGTTCATGAGTC
Found at i:32475357 original size:2 final size:2
Alignment explanation
Indices: 32475304--32475340 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
32475294 ATGTAAATTA
* *
32475304 AT AT AT AT AT AT AT AT AT AT GT AT AT AG AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32475341 AGAATTATGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (2 bp):
AT
Found at i:32475375 original size:20 final size:20
Alignment explanation
Indices: 32475325--32475379 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
32475315 TATATATATG
* *
32475325 TATATAGATATATATAAGAA
1 TATATAAATATATGTAAGAA
*
32475345 T-TATGAAATATATGTAAGTA
1 TATAT-AAATATATGTAAGAA
*
32475365 TATATACATATATGT
1 TATATAAATATATGT
32475380 TTATAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.10
20 23 0.79
21 3 0.10
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.40
Consensus pattern (20 bp):
TATATAAATATATGTAAGAA
Found at i:32475575 original size:3 final size:3
Alignment explanation
Indices: 32475567--32475628 Score: 72
Period size: 3 Copynumber: 20.7 Consensus size: 3
32475557 AGTATACATA
* * *
32475567 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AC AAT ATT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
32475614 ATT ATAT AAT AAT AA
1 AAT A-AT AAT AAT AA
32475629 CAGTATTAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 1 0.02
3 47 0.94
4 2 0.04
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:32477344 original size:31 final size:31
Alignment explanation
Indices: 32477306--32477390 Score: 136
Period size: 31 Copynumber: 2.7 Consensus size: 31
32477296 GGCCCATTTT
32477306 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTAAAAAAAG
*
32477337 TATTTTAAAAATATTTTAAAATTAAAAAAAG
1 TATTTTAAAAATATTTAAAAATTAAAAAAAG
32477368 TATTTTAAAAATATTTTAAAAAT
1 TATTTTAAAAATA-TTTAAAAAT
32477391 ATTTTAAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
31 39 0.78
32 11 0.22
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (31 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAAG
Found at i:32477383 original size:42 final size:41
Alignment explanation
Indices: 32477330--32477429 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
32477320 TAAAAAATTA
*
32477330 AAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAAGTATTT
1 AAAAAA-TATTTTAAAAATATTTTAAAATT-AAAAAAGTATGT
*
32477373 TAAAAATATTTTAAAAATATTTTAAAATTAAAAAAGTATGT
1 AAAAAATATTTTAAAAATATTTTAAAATTAAAAAAGTATGT
32477414 AAAAAATATTTTAAAA
1 AAAAAATATTTTAAAA
32477430 TTAAAAAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
41 26 0.48
42 23 0.43
43 5 0.09
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (41 bp):
AAAAAATATTTTAAAAATATTTTAAAATTAAAAAAGTATGT
Found at i:32477429 original size:11 final size:11
Alignment explanation
Indices: 32477306--32477399 Score: 92
Period size: 11 Copynumber: 8.9 Consensus size: 11
32477296 GGCCCATTTT
32477306 TATTTT-AAAA
1 TATTTTAAAAA
32477316 -ATTTTAAAAA
1 TATTTTAAAAA
**
32477326 -ATTAAAAAAA
1 TATTTTAAAAA
32477336 GTATTTTAAAAA
1 -TATTTTAAAAA
32477348 TATTTT--AAA
1 TATTTTAAAAA
**
32477357 -ATTAAAAAAA
1 TATTTTAAAAA
32477367 GTATTTTAAAAA
1 -TATTTTAAAAA
32477379 TATTTTAAAAA
1 TATTTTAAAAA
32477390 TATTTTAAAA
1 TATTTTAAAA
32477400 TTAAAAAAGT
Statistics
Matches: 69, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
8 3 0.04
9 8 0.12
10 15 0.22
11 27 0.39
12 16 0.23
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:32478305 original size:16 final size:16
Alignment explanation
Indices: 32478284--32478314 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32478274 CATGTTGGAG
32478284 CATATAAATTTGAAAC
1 CATATAAATTTGAAAC
*
32478300 CATATATATTTGAAA
1 CATATAAATTTGAAA
32478315 ACTTTTTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (16 bp):
CATATAAATTTGAAAC
Found at i:32478478 original size:18 final size:19
Alignment explanation
Indices: 32478432--32478478 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 19
32478422 GTAACTTTTT
32478432 TTAAA-TTTTTTAAAATTA
1 TTAAATTTTTTTAAAATTA
*
32478450 TTATACTTTTTTTTAAAATTA
1 TTA-A-ATTTTTTTAAAATTA
32478471 -TAAATTTT
1 TTAAATTTT
32478479 GGATTTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
18 7 0.29
19 2 0.08
20 2 0.08
21 13 0.54
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTAAATTTTTTTAAAATTA
Found at i:32478504 original size:20 final size:21
Alignment explanation
Indices: 32478481--32478531 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 21
32478471 TAAATTTTGG
32478481 ATTTTTTATAAATGT-TTTT-A
1 ATTTTTTATAAAT-TATTTTAA
* *
32478501 A-TTTTGAAAAATTATTTTAA
1 ATTTTTTATAAATTATTTTAA
32478521 ATTTTTTATAA
1 ATTTTTTATAA
32478532 TTTTTGTTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
18 1 0.04
19 13 0.54
20 3 0.12
21 7 0.29
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (21 bp):
ATTTTTTATAAATTATTTTAA
Found at i:32478533 original size:20 final size:20
Alignment explanation
Indices: 32478481--32478533 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
32478471 TAAATTTTGG
* * *
32478481 ATTTTTTATAAATGTTTTTA
1 ATTTTTTATAATTATTTTAA
** *
32478501 ATTTTGAAAAATTATTTTAA
1 ATTTTTTATAATTATTTTAA
32478521 ATTTTTTATAATT
1 ATTTTTTATAATT
32478534 TTTGTTGTGA
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (20 bp):
ATTTTTTATAATTATTTTAA
Found at i:32478692 original size:23 final size:23
Alignment explanation
Indices: 32478642--32478695 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
32478632 CATAACTTGA
* *
32478642 AACTCAAATTACTTATTCGAGTT
1 AACTCAAATAACTTATTCGAGTC
*
32478665 GACTCAAATAACTCTATTCGA-TC
1 AACTCAAATAACT-TATTCGAGTC
32478688 AACTCAAA
1 AACTCAAA
32478696 ATTCGAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 19 0.73
24 7 0.27
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.31
Consensus pattern (23 bp):
AACTCAAATAACTTATTCGAGTC
Found at i:32480648 original size:21 final size:21
Alignment explanation
Indices: 32480619--32480666 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
32480609 GATAGAAATT
32480619 AAAAATTAAAAATAAAA-AAAC
1 AAAAATTAAAAA-AAAATAAAC
* *
32480640 AAAATTTAAAAAAAAATAAAG
1 AAAAATTAAAAAAAAATAAAC
32480661 AAAAAT
1 AAAAAT
32480667 CTCTGGAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (21 bp):
AAAAATTAAAAAAAAATAAAC
Found at i:32482411 original size:12 final size:12
Alignment explanation
Indices: 32482378--32482404 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32482368 TGTTTGATTC
32482378 TTTTCTTTTCTT
1 TTTTCTTTTCTT
32482390 TTTTCTTTTCTT
1 TTTTCTTTTCTT
32482402 TTT
1 TTT
32482405 CATTTTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTCTTTTCTT
Found at i:32487745 original size:21 final size:21
Alignment explanation
Indices: 32487716--32487757 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32487706 TAAGGTAGTA
*
32487716 TTAAAGTTTTGTTAGAAAATT
1 TTAAAGTTTTGGTAGAAAATT
* *
32487737 TTAATGTTTTGGTAGATAATT
1 TTAAAGTTTTGGTAGAAAATT
32487758 AATTAGAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (21 bp):
TTAAAGTTTTGGTAGAAAATT
Found at i:32489001 original size:26 final size:25
Alignment explanation
Indices: 32488971--32489036 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
32488961 GCAACTCTTA
* *
32488971 TGAGCGTCCCGTTATATGGCTCTTCG
1 TGAGCTTCCCGTTA-AAGGCTCTTCG
* *
32488997 TGAGCTTCCCAATTAAAGGCTCTTTG
1 TGAGCTTCCC-GTTAAAGGCTCTTCG
32489023 TGAGCTTCCCGTTA
1 TGAGCTTCCCGTTA
32489037 GTGCTCGCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.09
26 28 0.82
27 3 0.09
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.35
Consensus pattern (25 bp):
TGAGCTTCCCGTTAAAGGCTCTTCG
Found at i:32489107 original size:24 final size:24
Alignment explanation
Indices: 32489074--32489132 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
32489064 GCTATCTGGT
*
32489074 GCTACTCGTTAATTGCTCTTCAGA
1 GCTACCCGTTAATTGCTCTTCAGA
**
32489098 GCTACCCGTTAATTGCTCTTTGGA
1 GCTACCCGTTAATTGCTCTTCAGA
32489122 GCTACCCGTTA
1 GCTACCCGTTA
32489133 TAAGCTCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.36
Consensus pattern (24 bp):
GCTACCCGTTAATTGCTCTTCAGA
Found at i:32489139 original size:24 final size:26
Alignment explanation
Indices: 32489096--32489160 Score: 82
Period size: 24 Copynumber: 2.6 Consensus size: 26
32489086 TTGCTCTTCA
*
32489096 GAGCTACCCGTTA-ATTGCTCTTTG-
1 GAGCTACCCGTTATATAGCTCTTTGT
32489120 GAGCTACCCGTTATA-AGCTCTTTGT
1 GAGCTACCCGTTATATAGCTCTTTGT
* *
32489145 GAGCTTCCCTTTATAT
1 GAGCTACCCGTTATAT
32489161 TTCCCGGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 21 0.60
25 14 0.40
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.38
Consensus pattern (26 bp):
GAGCTACCCGTTATATAGCTCTTTGT
Found at i:32494579 original size:20 final size:21
Alignment explanation
Indices: 32494556--32494599 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
32494546 AACTCTTCAG
32494556 AAAAA-TAGAA-ATAAATATAT
1 AAAAATTAGAATA-AAATATAT
32494576 AAAAATTTAGAATAAAATATAT
1 AAAAA-TTAGAATAAAATATAT
32494598 AA
1 AA
32494600 TCTAATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.24
22 15 0.71
23 1 0.05
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (21 bp):
AAAAATTAGAATAAAATATAT
Found at i:32501644 original size:19 final size:20
Alignment explanation
Indices: 32501609--32501652 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
32501599 ACTTCTTTTC
*
32501609 GCATT-CATTTCATTCATCT
1 GCATTACATTTCATTCATAT
32501628 GCATTACATTTCA-TCATAT
1 GCATTACATTTCATTCATAT
32501647 GCATTA
1 GCATTA
32501653 AGATTCATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.27, C:0.23, G:0.07, T:0.43
Consensus pattern (20 bp):
GCATTACATTTCATTCATAT
Found at i:32507358 original size:189 final size:189
Alignment explanation
Indices: 32507038--32507412 Score: 583
Period size: 189 Copynumber: 2.0 Consensus size: 189
32507028 TCTGTTGTGA
* * * * * *
32507038 CTACTGAAGAATGCGCTCAAGAAGGACATCTTTGGAAACTAAATTTTGACGAAGCTTCAAACGTT
1 CTACTGAAGAATGCGCTCAAAAAAGACATCCTTAGAAACTAAATTTTAACGAAGCTTCAAACGCT
*
32507103 ATGGGTAACGGAATCGGGGCAGTCCTAGTATCTCTAAACAGAGATCATTATCCCTTTACTAGTAA
66 ATGGGTAACGGAATCGAGGCAGTCCTAGTATCTCTAAACAGAGATCATTATCCCTTTACTAGTAA
32507168 ATTGGATTTTTATTGCACGAATAATATGGAAAAATACGAAGCATGCATCATGGGCACCC
131 ATTGGATTTTTATTGCACGAATAATATGGAAAAATACGAAGCATGCATCATGGGCACCC
* *
32507227 CTACTGAAGAATGTGCTCAAAAAAGACATCCTTAGAAACTAAATTTTAACGGAGCTTCAAACGCT
1 CTACTGAAGAATGCGCTCAAAAAAGACATCCTTAGAAACTAAATTTTAACGAAGCTTCAAACGCT
* * *
32507292 ATGGGTAACGGAATCGAGGCAGTCTTGGTATC-CTAAA-ATGGGGATCATTATCCCTTTACTAGT
66 ATGGGTAACGGAATCGAGGCAGTCCTAGTATCTCTAAACA--GAGATCATTATCCCTTTACTAGT
* * *
32507355 AAATTGGATTTTTATTGCATGAATAATATGGCAAAATATGAAGCATGCATCATGGGCA
129 AAATTGGATTTTTATTGCACGAATAATATGGAAAAATACGAAGCATGCATCATGGGCA
32507413 TCTGTGCAGC
Statistics
Matches: 169, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
187 1 0.01
188 5 0.03
189 163 0.96
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (189 bp):
CTACTGAAGAATGCGCTCAAAAAAGACATCCTTAGAAACTAAATTTTAACGAAGCTTCAAACGCT
ATGGGTAACGGAATCGAGGCAGTCCTAGTATCTCTAAACAGAGATCATTATCCCTTTACTAGTAA
ATTGGATTTTTATTGCACGAATAATATGGAAAAATACGAAGCATGCATCATGGGCACCC
Found at i:32509218 original size:50 final size:49
Alignment explanation
Indices: 32509163--32509336 Score: 204
Period size: 50 Copynumber: 3.5 Consensus size: 49
32509153 CATTGAGATT
*
32509163 ATGAGAGGTCCCATGTAAGACCATGTCTGAGACATAGAGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGAGACAT-GAGTTGGCACCGAG
* * * *
32509213 ATGAGAGATCCCCCGTAAGACCATGTCTGAGACATGGCGTTGGCACTGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGAGACAT-GAGTTGGCACCGAG
* * * * *
32509263 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGACATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGA-GTTGGCACCGAG
** *
32509313 ATGAGAACTCCCATGTAAGACCAT
1 ATGAGAGGTCCCACGTAAGACCAT
32509337 ATAAGACTAT
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
49 1 0.01
50 105 0.99
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.20
Consensus pattern (49 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGAGTTGGCACCGAG
Found at i:32509308 original size:100 final size:103
Alignment explanation
Indices: 32509111--32509336 Score: 282
Period size: 100 Copynumber: 2.2 Consensus size: 103
32509101 TTAAGGGAAT
*
32509111 GAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCA
1 GAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCA-TGAG--TATGAGAGGTCCCA
* * *
32509176 TGTAAGACCATGTCTGAGACATAGAGTTGGCACCGAGATGA
63 CGTAAGACCATGTCTGAGACATAGAATGGGCACCGAGATGA
** * *
32509217 GAGATCCCCCGTAAGACCATGTCTGAGACATGGCGTTGGCA-C-TGAG-ATGAGAGGTCCCCCGT
1 GAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCATGAGTATGAGAGGTCCCACGT
* *
32509279 AAGACCATGTCTGGGACAT-GACATGGGCACCGATATGA
66 AAGACCATGTCTGAGACATAGA-ATGGGCACCGAGATGA
32509317 GA-ACTCCCATGTAAGACCAT
1 GAGA-TCCCATGTAAGACCAT
32509337 ATAAGACTAT
Statistics
Matches: 106, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
99 3 0.03
100 61 0.58
103 4 0.04
105 1 0.01
106 37 0.35
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (103 bp):
GAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCATGAGTATGAGAGGTCCCACGT
AAGACCATGTCTGAGACATAGAATGGGCACCGAGATGA
Found at i:32512293 original size:501 final size:501
Alignment explanation
Indices: 32511346--32512342 Score: 1521
Period size: 501 Copynumber: 2.0 Consensus size: 501
32511336 GTGAAGGCAG
*
32511346 CTAATAAGAACATTAACAAGATCATGTGGAAAATGACTGAGACTTATAAAGATTGGCATGAGAAG
1 CTAATAAGAACATTAACAAGATCATGGGGAAAATGACTGAGACTTATAAAGATTGGCATGAGAAG
* *
32511411 TTACCATTTTCCCTCTATGCTTATCAAACGTCTATTAGAACCTCCACTGAGGCAACGCCTTTCCC
66 TTACCATTTGCCCTCTATGCTTATCAAACGTCTATTAGAACCTCCACCGAGGCAACGCCTTTCCC
* * *
32511476 ATTGGTTTATGGAATAGAGGCGGTTTTGCCCATTGAAGCCGAGATTCATTCTCTTTGAGTTTTGT
131 ATTGGTTTATAGAATAGAGGCGATTTTGCCCATTGAAGCCGAGATTCATTCTCTCTGAGTTTTGT
* * *
32511541 TAGATTTGAAGTTAGACGAAACATAATGGATCCAATCCTGATATGATCAGCTGAACTTGATTGAA
196 TAGAGTTGAAGTTAGACGAAACAGAATAGATCCAATCCTGATATGATCAGCTGAACTTGATTGAA
* * * * *
32511606 AAGAAGAGGTTGAATGCTATCCGTCATGGTTAGATGTACTAAAAATGAATGATGTGAGCTTATGA
261 AAGAAGAGGCTGAAAGCTATCCGTCATGGTCAGATGTACTAAAAACGAATGATGCGAGCTTATGA
* * * *
32511671 CAAAAAGGTTCGCCCAAGAGAATTTCATGAGGGGGACCTGGTATTGAAAAATATCATTCCCATAC
326 CAAAAAGGTTCGCCCAAGAAAATTCCATGAGGGGGACCTGGAATTGAAAAAGATCATTCCCATAC
* * *
32511736 AAAAGGAATTCAAAAGAAAGTAGATGCCAAACTAGGAAGGACCTTATGTGATAAAGAAGGCCTTT
391 AAAAGGAATTCAAAAGAAAGTAGATGCCAAACTAGGAAGAACCTTATGTAATAAAGAAGACCTTT
* * * *
32511801 GCTGGAGGAGTGCTGATTTTGATCTAGATGGATGGTAAAAATCTGT
456 GCTAGAGGAGCGCTGATTTTGACCGAGATGGATGGTAAAAATCTGT
* *
32511847 CTAATAAGAACATTAAGAAGATCGTGGGGAAAATGACTGAGACTTATAAAGATTGGCATGAGAAG
1 CTAATAAGAACATTAACAAGATCATGGGGAAAATGACTGAGACTTATAAAGATTGGCATGAGAAG
** * *
32511912 TTACCATTTGCCCTCTATGCTTATTGAACGTCTATTAGAACCTCCACCGGGGCAACGCCTTTCTC
66 TTACCATTTGCCCTCTATGCTTATCAAACGTCTATTAGAACCTCCACCGAGGCAACGCCTTTCCC
* * * *
32511977 ATTGGTTTATAGAATGGAGGCGATTTTGTCCATTGAAGTCGAGATTCCTTCTCTCTGAGTTTTGT
131 ATTGGTTTATAGAATAGAGGCGATTTTGCCCATTGAAGCCGAGATTCATTCTCTCTGAGTTTTGT
**
32512042 TAGAGTTGAAGTTAGACGAAGTAGAATAGATCCAATCCTGATATGATCAGCTGAACTTGATTGAA
196 TAGAGTTGAAGTTAGACGAAACAGAATAGATCCAATCCTGATATGATCAGCTGAACTTGATTGAA
* *
32512107 GAGAAGAGGCTGAAAGTTATCCGTCATGGTCAGATGTACTAAAAACGAATGATGCGAGCTTATGA
261 AAGAAGAGGCTGAAAGCTATCCGTCATGGTCAGATGTACTAAAAACGAATGATGCGAGCTTATGA
* *
32512172 CAAAAAGGTTCGCTCCAA-AAAATTCCATGAGTGGGACCTGGAATTGAAAAAGATTC-TTTCCAT
326 CAAAAAGGTTCGC-CCAAGAAAATTCCATGAGGGGGACCTGGAATTGAAAAAGA-TCATTCCCAT
* * * * * *
32512235 ACAAAAGGACTTTAGAGGAAAGTGGATGCCAAACTGGGAAGAACCTTATGTAATAAAGAAGACCT
389 ACAAAAGGAATTCAAAAGAAAGTAGATGCCAAACTAGGAAGAACCTTATGTAATAAAGAAGACCT
**
32512300 TTTTTAGAGGAGCGCTGATTTTGACCGAGATGGATGGTAAAAA
454 TTGCTAGAGGAGCGCTGATTTTGACCGAGATGGATGGTAAAAA
32512343 CCTACCTAAT
Statistics
Matches: 445, Mismatches: 49, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
501 439 0.99
502 6 0.01
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (501 bp):
CTAATAAGAACATTAACAAGATCATGGGGAAAATGACTGAGACTTATAAAGATTGGCATGAGAAG
TTACCATTTGCCCTCTATGCTTATCAAACGTCTATTAGAACCTCCACCGAGGCAACGCCTTTCCC
ATTGGTTTATAGAATAGAGGCGATTTTGCCCATTGAAGCCGAGATTCATTCTCTCTGAGTTTTGT
TAGAGTTGAAGTTAGACGAAACAGAATAGATCCAATCCTGATATGATCAGCTGAACTTGATTGAA
AAGAAGAGGCTGAAAGCTATCCGTCATGGTCAGATGTACTAAAAACGAATGATGCGAGCTTATGA
CAAAAAGGTTCGCCCAAGAAAATTCCATGAGGGGGACCTGGAATTGAAAAAGATCATTCCCATAC
AAAAGGAATTCAAAAGAAAGTAGATGCCAAACTAGGAAGAACCTTATGTAATAAAGAAGACCTTT
GCTAGAGGAGCGCTGATTTTGACCGAGATGGATGGTAAAAATCTGT
Found at i:32513346 original size:44 final size:44
Alignment explanation
Indices: 32513283--32513790 Score: 404
Period size: 44 Copynumber: 11.1 Consensus size: 44
32513273 TTAAAGCTAC
* *
32513283 AAGTTACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCATATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * *
32513327 AAGTTACAAATCTTATCTCCCTGGAGTTACAGTGAAGCAGATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * * * *
32513371 AAGTTATAAATGTTATCTCCCTAAAGTTGCAGTGAAGCAAATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * *
32513415 AAGCTACAAATCTTATCACCCTGGAGTTGCAGTGGAGCAGATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * * * * *
32513459 AAGCTACAATTCTTATTTCCTTGAAGTTGCAGTAGAACAGATTAAAG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G
** * *
32513506 CTACAAGTTATGAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTA
1 ----AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
** * * * * *
32513554 AAACTACAAATCTTATTTTCCTGAAGTTGTAGTGGAACAAATTAAAG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G
** * * * *
32513601 CTACAAGTTATGAATCTTATCTCCTTAAAGTTGCAATGGAGCTGATTG
1 ----AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
** * * *
32513649 AAACTACAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G
** *
32513696 CTACAAGTTATGAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTG
1 ----AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * *
32513744 AAGTTACAAGTCTCATCTCCCTGAAGTTGCATTGGAGCAGATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
32513788 AAG
1 AAG
32513791 CGTCAAACCC
Statistics
Matches: 361, Mismatches: 82, Indels: 42
0.74 0.17 0.09
Matches are distributed among these distances:
44 256 0.71
47 2 0.01
48 2 0.01
51 101 0.28
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (44 bp):
AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
Found at i:32513437 original size:88 final size:88
Alignment explanation
Indices: 32513283--32513791 Score: 313
Period size: 95 Copynumber: 5.5 Consensus size: 88
32513273 TTAAAGCTAC
* * * * *
32513283 AAGTTACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCATATTGAAGTTACAAATCTTATCTCCC
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGCTACAAATCTTATCACCC
32513348 TGGAGTTACAGTGAAGCAGATTG
66 TGGAGTTACAGTGAAGCAGATTG
* * *
32513371 AAGTTATAAATGTTATCTCCCTAAAGTTGCAGTGAAGCAAATTGAAGCTACAAATCTTATCACCC
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGCTACAAATCTTATCACCC
* *
32513436 TGGAGTTGCAGTGGAGCAGATTG
66 TGGAGTTACAGTGAAGCAGATTG
* * * * * *
32513459 AAGCTACAATTCTTATTTCCTTGAAGTTGCAGTAGAA-CAGATTAAAGCTACAAGTTATGAATCT
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGT-GAAGCAAATTGAAGCTAC-----A--AATCT
* * * * * *
32513523 TATCTCCTTGAAGTTGCAGTGGAGCAGATTA
58 TATCACCCTGGAGTTACAGTGAAGCAGATTG
** * * * *
32513554 AAACTACAAATCTTATTTTCCTGAAGTTGTAGTGGAA-CAAATTAAAGCTACAAGTTATGAATCT
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGT-GAAGCAAATTGAAGCTAC-----A--AATCT
* * ** * * * *
32513618 TATCTCCTTAAAGTTGCAATGGAGCTGATTG
58 TATCACCCTGGAGTTACAGTGAAGCAGATTG
** * * * *
32513649 AAACTACAAATCTTATTTCCCTGAAGTTGTAGTGGAA-CAGATTAAAGCTACAAGTTATGAATCT
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGT-GAAGCAAATTGAAGCTAC-----A--AATCT
* * * * *
32513713 TATCTCCCTGAAGTTGCAATGGAGCAGATTG
58 TATCACCCTGGAGTTACAGTGAAGCAGATTG
* * * * *
32513744 AAGTTACAAGTCTCATCTCCCTGAAGTTGCATTGGAGCAGATTGAAGC
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGC
32513792 GTCAAACCCT
Statistics
Matches: 364, Mismatches: 48, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
88 116 0.32
89 3 0.01
93 1 0.00
94 2 0.01
95 242 0.66
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (88 bp):
AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGCTACAAATCTTATCACCC
TGGAGTTACAGTGAAGCAGATTG
Found at i:32513550 original size:95 final size:95
Alignment explanation
Indices: 32513335--32513791 Score: 516
Period size: 95 Copynumber: 4.9 Consensus size: 95
32513325 TGAAGTTACA
* * * * ** * * * *
32513335 AATCTTATCTCCCTGGAGTTACAGTGAAGCAGATTGAAGTTATAAATGTTATCTCCCTAAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
* *
32513400 CAGT-GAAGCAAATTGAAGCTAC-----A--
66 CAGTGGAA-CAGATTAAAGCTACAAGTTATG
* * * * * *
32513423 AATCTTATCACCCTGGAGTTGCAGTGGAGCAGATTGAAGCTACAATTCTTATTTCCTTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
*
32513488 CAGTAGAACAGATTAAAGCTACAAGTTATG
66 CAGTGGAACAGATTAAAGCTACAAGTTATG
* * * *
32513518 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACTACAAATCTTATTTTCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
* *
32513583 TAGTGGAACAAATTAAAGCTACAAGTTATG
66 CAGTGGAACAGATTAAAGCTACAAGTTATG
* * *
32513613 AATCTTATCTCCTTAAAGTTGCAATGGAGCTGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
*
32513678 TAGTGGAACAGATTAAAGCTACAAGTTATG
66 CAGTGGAACAGATTAAAGCTACAAGTTATG
** * * *
32513708 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGTTACAAGTCTCATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
* * *
32513773 CATTGGAGCAGATTGAAGC
66 CAGTGGAACAGATTAAAGC
32513792 GTCAAACCCT
Statistics
Matches: 320, Mismatches: 41, Indels: 9
0.86 0.11 0.02
Matches are distributed among these distances:
88 71 0.22
89 3 0.01
93 1 0.00
95 245 0.77
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (95 bp):
AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
CAGTGGAACAGATTAAAGCTACAAGTTATG
Found at i:32513749 original size:139 final size:132
Alignment explanation
Indices: 32513232--32513789 Score: 463
Period size: 139 Copynumber: 4.0 Consensus size: 132
32513222 CAGATCAATA
*
32513232 AAACTACAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTT
1 AAACTACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAG---C----TACAAATCTT
* * * * * *
32513297 ATCTCCCTGAAGTTGTAGTGGAGCATATTGAAGTTACAAATCTTATCTCCCTGGAGTTACAGTGA
59 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGG
32513362 AGCAGATTG
124 AGCAGATTG
** * * * * * *
32513371 AAGTTATAAATGTTATCTCCCTAAAGTTGCAGT-GAAGCAAATTGAAGCTACAAATCTTATCACC
1 AAACTACAAATCTTATCTCCCTGAAGTTGCAGTGGAA-CAGATTAAAGCTACAAATCTTATCTCC
* * * * * * *
32513435 CTGGAGTTGCAGTGGAGCAGATTGAAGCTACAATTCTTATTTCCTTGAAGTTGCAGTAGAACAGA
65 CTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
32513500 TT-
130 TTG
* * *
32513502 AAAGCTACAAGTTATGAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACTACAAATCT
1 AAA-CTAC-----A--AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATCT
* * * * * * * * *
32513567 TATTTTCCTGAAGTTGTAGTGGAACAAATTAAAGCTACAAGTTATGAATCTTATCTCCTTAAAGT
58 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC-A---A-G--TCTTATCTCCCTGAAGT
* *
32513632 TGCAATGGAGCTGATTG
116 TGCAGTGGAGCAGATTG
* *
32513649 AAACTACAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTATGAATCTT
1 AAACTACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAC-----A--AATCTT
* * *
32513714 ATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGTTACAAGTCTCATCTCCCTGAAGTTGCATTGG
59 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGG
32513779 AGCAGATTG
124 AGCAGATTG
32513788 AA
1 AA
32513790 GCGTCAAACC
Statistics
Matches: 330, Mismatches: 64, Indels: 50
0.74 0.14 0.11
Matches are distributed among these distances:
131 2 0.01
132 72 0.22
136 1 0.00
137 1 0.00
138 3 0.01
139 173 0.52
140 3 0.01
141 2 0.01
142 1 0.00
143 1 0.00
144 1 0.00
145 1 0.00
146 66 0.20
147 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (132 bp):
AAACTACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATCTTATCTCCC
TGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
TG
Found at i:32515248 original size:3 final size:3
Alignment explanation
Indices: 32515236--32515311 Score: 118
Period size: 3 Copynumber: 25.7 Consensus size: 3
32515226 TGTGCTTTTA
* **
32515236 TAT T-T TAT TAT TAT TGT CCT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
32515283 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
32515312 GTGATATATA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
2 2 0.03
3 65 0.97
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:32517553 original size:39 final size:40
Alignment explanation
Indices: 32517510--32517597 Score: 110
Period size: 39 Copynumber: 2.2 Consensus size: 40
32517500 CGAATTATGG
*
32517510 AATACTGAATATTGTCT-TG-ATTACTG-AGTGAATTGTGAA
1 AATACTGAATATTGT-TATGCA-TAATGCAGTGAATTGTGAA
*
32517549 AATACTGAATATTGTTATGCATAATGCATTGAATTGTGAA
1 AATACTGAATATTGTTATGCATAATGCAGTGAATTGTGAA
*
32517589 ATTACTGAA
1 AATACTGAA
32517598 GTAAAGAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
38 1 0.02
39 21 0.49
40 21 0.49
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (40 bp):
AATACTGAATATTGTTATGCATAATGCAGTGAATTGTGAA
Found at i:32528632 original size:23 final size:23
Alignment explanation
Indices: 32528588--32528655 Score: 63
Period size: 21 Copynumber: 3.1 Consensus size: 23
32528578 ATATATCAAC
* *
32528588 TATAT-ATTAAAT-ATTGAAATA
1 TATATAATTACATAATTCAAATA
32528609 TA-ATAATTACA-AATTCAAATA
1 TATATAATTACATAATTCAAATA
** *
32528630 TATATTGTTACATATTTCAAATA
1 TATATAATTACATAATTCAAATA
32528653 TAT
1 TAT
32528656 TTCGAGAGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 2 0.05
21 17 0.45
22 7 0.18
23 12 0.32
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (23 bp):
TATATAATTACATAATTCAAATA
Found at i:32530264 original size:17 final size:18
Alignment explanation
Indices: 32530242--32530284 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
32530232 AATTCAACAG
32530242 TTGTATTTA-AAAAATAA
1 TTGTATTTACAAAAATAA
* *
32530259 TTGTATTTACCAATATAA
1 TTGTATTTACAAAAATAA
32530277 TTGTATTT
1 TTGTATTT
32530285 GTAATGCATC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.49
Consensus pattern (18 bp):
TTGTATTTACAAAAATAA
Found at i:32540366 original size:20 final size:20
Alignment explanation
Indices: 32540338--32540378 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32540328 TAATAATGAG
32540338 AATACCAATTTTAAAATAAT
1 AATACCAATTTTAAAATAAT
* *
32540358 AATATCAATTTTATAATAAT
1 AATACCAATTTTAAAATAAT
32540378 A
1 A
32540379 TCAATAATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (20 bp):
AATACCAATTTTAAAATAAT
Found at i:32540831 original size:50 final size:49
Alignment explanation
Indices: 32540732--32540841 Score: 125
Period size: 50 Copynumber: 2.2 Consensus size: 49
32540722 AAAAGACAAT
* * **
32540732 AATAAATAAATAAATAAATAAATCATGAAAGGTTGAAATTGCCATAATA
1 AATAAATAAATAAATAAAAAAATCATGAAAAGTTGAAATTGAAATAATA
*
32540781 AATAAGTAAAT-AATAAAAAAATTTCATGAAAAGTTGAAATT-AAATAAATA
1 AATAAATAAATAAATAAAAAAA--TCATGAAAAGTTGAAATTGAAAT-AATA
*
32540831 AATAATTAAAT
1 AATAAATAAAT
32540842 TTAAATTTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
48 9 0.17
49 12 0.23
50 31 0.60
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.28
Consensus pattern (49 bp):
AATAAATAAATAAATAAAAAAATCATGAAAAGTTGAAATTGAAATAATA
Found at i:32543443 original size:28 final size:27
Alignment explanation
Indices: 32543410--32543508 Score: 119
Period size: 28 Copynumber: 3.6 Consensus size: 27
32543400 TAATGAGATT
32543410 AGCACTAAGTGTGCGAGTTTAATTGAA
1 AGCACTAAGTGTGCGAGTTTAATTGAA
* **
32543437 ATGCACTAAGTGTGCGAGTATAAGGGTAA
1 A-GCACTAAGTGTGCGAGTTTAATTG-AA
*
32543466 AGCACTAAGTGTGCGAGTTTGATT-ATTA
1 AGCACTAAGTGTGCGAGTTTAATTGA--A
32543494 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32543509 TACTTATTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 56 0.92
29 3 0.05
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTTAATTGAA
Found at i:32544490 original size:25 final size:24
Alignment explanation
Indices: 32544444--32544589 Score: 121
Period size: 25 Copynumber: 6.2 Consensus size: 24
32544434 TTGTGTTATA
32544444 AATTTTAATGTATA--ATGCTGTCC
1 AATTTTAA-GTATATTATGCTGTCC
32544467 AATTTTAAGTATATTGATGCTGTCC
1 AATTTTAAGTATATT-ATGCTGTCC
32544492 -ATTTTAATGTATA--ATGCTGTCC
1 AATTTTAA-GTATATTATGCTGTCC
* * *
32544514 AATTTTGAGTATATTTAAGCTGTCT
1 AATTTTAAGTATA-TTATGCTGTCC
* *
32544539 AATTTGATGTATA--ATGCTGTCC
1 AATTTTAAGTATATTATGCTGTCC
*
32544561 -A-TTTAGAGCATATTATTGCTGTCC
1 AATTTTA-AGTATATTA-TGCTGTCC
32544585 AATTT
1 AATTT
32544590 GATGAATAAT
Statistics
Matches: 98, Mismatches: 11, Indels: 25
0.73 0.08 0.19
Matches are distributed among these distances:
20 3 0.03
21 5 0.05
22 26 0.27
23 15 0.15
24 15 0.15
25 32 0.33
26 2 0.02
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (24 bp):
AATTTTAAGTATATTATGCTGTCC
Found at i:32544511 original size:22 final size:22
Alignment explanation
Indices: 32544445--32544564 Score: 109
Period size: 22 Copynumber: 5.2 Consensus size: 22
32544435 TGTGTTATAA
32544445 ATTTTAATGTATAATGCTGTCC
1 ATTTTAATGTATAATGCTGTCC
32544467 AATTTTAA-GTATATTGATGCTGTCC
1 -ATTTTAATGTATA---ATGCTGTCC
32544492 ATTTTAATGTATAATGCTGTCC
1 ATTTTAATGTATAATGCTGTCC
* * *
32544514 AATTTTGA-GTATATTTAAGCTGTCT
1 -ATTTTAATGTATA---ATGCTGTCC
* *
32544539 AATTTGATGTATAATGCTGTCC
1 ATTTTAATGTATAATGCTGTCC
32544561 ATTT
1 ATTT
32544565 AGAGCATATT
Statistics
Matches: 81, Mismatches: 7, Indels: 19
0.76 0.07 0.18
Matches are distributed among these distances:
22 29 0.36
23 13 0.16
24 13 0.16
25 26 0.32
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.46
Consensus pattern (22 bp):
ATTTTAATGTATAATGCTGTCC
Found at i:32544514 original size:47 final size:46
Alignment explanation
Indices: 32544447--32544609 Score: 195
Period size: 47 Copynumber: 3.5 Consensus size: 46
32544437 TGTTATAAAT
*
32544447 TTTAATGTATAATGCTGTCCAATTTTAAGTATATTGATGCTGTCCAT
1 TTTAATGTATAATGCTGTCCAATTTTAAGTATATT-ATGCTGTCCAA
* * *
32544494 TTTAATGTATAATGCTGTCCAATTTTGAGTATATTTAAGCTGTCTAA
1 TTTAATGTATAATGCTGTCCAATTTTAAGTATA-TTATGCTGTCCAA
* *
32544541 TTTGATGTATAATGCTGTCC-A-TTTAGAGCATATTATTGCTGTCCAA
1 TTTAATGTATAATGCTGTCCAATTTTA-AGTATATTA-TGCTGTCCAA
* *
32544587 TTTGATGAATAATTGCTGTCCAA
1 TTTAATGTATAA-TGCTGTCCAA
32544610 AACAGGGTTG
Statistics
Matches: 101, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
45 6 0.06
46 25 0.25
47 67 0.66
48 3 0.03
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.43
Consensus pattern (46 bp):
TTTAATGTATAATGCTGTCCAATTTTAAGTATATTATGCTGTCCAA
Found at i:32547333 original size:27 final size:27
Alignment explanation
Indices: 32547303--32547362 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
32547293 TTTTAATTAT
32547303 TTTCTTTAAAGGTCGAAATTTGTATCA
1 TTTCTTTAAAGGTCGAAATTTGTATCA
32547330 TTTCTTTAAAGGTCGAAATTTGTATCA
1 TTTCTTTAAAGGTCGAAATTTGTATCA
32547357 -TTCTTT
1 TTTCTTT
32547363 TTTTCTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 6 0.18
27 27 0.82
ACGTcount: A:0.27, C:0.12, G:0.13, T:0.48
Consensus pattern (27 bp):
TTTCTTTAAAGGTCGAAATTTGTATCA
Found at i:32550865 original size:22 final size:23
Alignment explanation
Indices: 32550808--32550865 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 23
32550798 GTGATTATGT
* **
32550808 TTTATTTCTATTTCCACGGGGTAG
1 TTTAGTTCTA-TTCCACAAGGTAG
*
32550832 GTTAGTTC-ATTCCACAAGGTAG
1 TTTAGTTCTATTCCACAAGGTAG
32550854 TTTA-TTCTATTC
1 TTTAGTTCTATTC
32550866 TGTGACTGCA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 3 0.11
22 18 0.64
23 1 0.04
24 6 0.21
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.45
Consensus pattern (23 bp):
TTTAGTTCTATTCCACAAGGTAG
Found at i:32553532 original size:44 final size:44
Alignment explanation
Indices: 32553475--32553958 Score: 307
Period size: 44 Copynumber: 10.8 Consensus size: 44
32553465 TTGTAATTTC
* * *
32553475 AATCTACTCCACTGCAACTTCAAGGAGATGAGATTCGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTT
* * ** * *
32553519 AACCTGTTCCACTGCAA-TTTTAGCAAGACAAGATTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAAG-GAGATAAGATTTGTAGCTTT
* * * *
32553563 AATCTGCTCCACTTCAACTTCAGGGAGATAAGGTTTGTAGTTTT
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTT
* * *
32553607 AATCTGTTCC-CTTGCAACTTCAAGGAGATAACATTTGTAGTTTT
1 AATCTGCTCCAC-TGCAACTTCAAGGAGATAAGATTTGTAGCTTT
* * * * * * *
32553651 GATTTGCTCCACTACAACTTCAGGGAGATAAGATTCGTAACTTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTT
** * * * * * * *
32553695 AATCCAACT-CATTGTAAATTC-AGGGGTATAGGATTTTTAGCTTC
1 AAT-CTGCTCCACTGCAACTTCAAGGAG-ATAAGATTTGTAGCTTT
*
32553739 AATCTGCTCCACTGCAACTTC-AGAAAGATAAGATTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAAG-GAGATAAGATTTGTAGCTTT
* * * * * *
32553783 AATCAGCTTCACTGCAACTTTAGGGAGATAAGATTTACCATGGTAACTTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TT----T-GTAGCTTT
* * * * * * *
32553833 AATCCGGC-CCATTGCGACTT-TAGGAGTATAGGATTTTTTAGCTTC
1 AAT-CTGCTCCACTGCAACTTCAAGGAG-ATAAGA-TTTGTAGCTTT
* * *
32553878 AATCTACTGCACTGCAACTTCATGGAGATAAGATTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTT
* ** * *
32553922 AATATATTCCACTGCAACTTTAGGGAGATAAGATTTG
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTG
32553959 CTATGATAGA
Statistics
Matches: 332, Mismatches: 89, Indels: 38
0.72 0.19 0.08
Matches are distributed among these distances:
43 11 0.03
44 249 0.75
45 33 0.10
46 5 0.02
49 5 0.02
50 26 0.08
51 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTT
Found at i:32553907 original size:139 final size:131
Alignment explanation
Indices: 32553472--32553957 Score: 396
Period size: 132 Copynumber: 3.6 Consensus size: 131
32553462 GTATTGTAAT
* *
32553472 TTCAATCTACTCCACTGCAACTTCAAGGAGATGAGATTCGTAGCTTTAACCT-G-TTCCACTGCA
1 TTCAATCTACTCCACTGCAACTTC-AGGAGATAAGATTTGTAGCTTTAA--TAGCTT-CACTGCA
* ** * * * ** *
32553535 ATTTTAGCAAGACAAGATTT-GTAGCTTTAAT-CTGCTCCACTT-CAACTTCAGGGAG-ATAAGG
62 ACTTTAGGGAGATAAGATTTCGTAACTTCAATCCAAC-CCA-TTGCAAATTCA-GGAGTAT-AGG
* *
32553596 -TTTGTAGT
123 ATTTTTAGC
* ** * * * * * *
32553604 TTTAATCTGTTCC-CTTGCAACTTCAAGGAGATAACATTTGTAGTTTTGATTTGCTCCACTACAA
1 TTCAATCTACTCCAC-TGCAACTTC-AGGAGATAAGATTTGTAGCTTT-AATAGCTTCACTGCAA
* * * *
32553668 CTTCAGGGAGATAAGA-TTCGTAACTTCAATCCAACTCATTGTAAATTCAGGGGTATAGGATTTT
63 CTTTAGGGAGATAAGATTTCGTAACTTCAATCCAACCCATTGCAAATTCAGGAGTATAGGATTTT
32553732 TAGC
128 TAGC
* *
32553736 TTCAATCTGCTCCACTGCAACTTCAGAAAGATAAGATTTGTAGCTTTAATCAGCTTCACTGCAAC
1 TTCAATCTACTCCACTGCAACTTCAG-GAGATAAGATTTGTAGCTTTAAT-AGCTTCACTGCAAC
** * * *
32553801 TTTAGGGAGATAAGATTTACCATGGTAACTTCAATCCGGCCCATTGCGACTTTAGGAGTATAGGA
64 TTTAGGGAGATAAGATTT--C---GTAACTTCAATCCAACCCATTGCAAATTCAGGAGTATAGGA
32553866 TTTTTTAGC
124 -TTTTTAGC
* **
32553875 TTCAATCTACTGCACTGCAACTTCATGGAGATAAGATTTGTAGCTTTAATATATTCCACTGCAAC
1 TTCAATCTACTCCACTGCAACTTCA-GGAGATAAGATTTGTAGCTTTAATAGCTT-CACTGCAAC
32553940 TTTAGGGAGATAAGATTT
64 TTTAGGGAGATAAGATTT
32553958 GCTATGATAG
Statistics
Matches: 285, Mismatches: 48, Indels: 35
0.77 0.13 0.10
Matches are distributed among these distances:
131 16 0.06
132 144 0.51
133 7 0.02
135 1 0.00
138 36 0.13
139 80 0.28
140 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (131 bp):
TTCAATCTACTCCACTGCAACTTCAGGAGATAAGATTTGTAGCTTTAATAGCTTCACTGCAACTT
TAGGGAGATAAGATTTCGTAACTTCAATCCAACCCATTGCAAATTCAGGAGTATAGGATTTTTAG
C
Found at i:32553973 original size:139 final size:138
Alignment explanation
Indices: 32553720--32553977 Score: 387
Period size: 139 Copynumber: 1.9 Consensus size: 138
32553710 AAATTCAGGG
*
32553720 GTATAGGATTTTTAGCTTCAATCTGCTCCACTGCAACTTCAGAAAGATAAGATTTGTAGCTTTAA
1 GTATAGGATTTTTAGCTTCAATCTACTCCACTGCAACTTCAGAAAGATAAGATTTGTAGCTTTAA
* *
32553785 TCAGCTTCACTGCAACTTTAGGGAGATAAGATTTACCATGGTAACTTCAATCCGGCCCATTGCGA
66 TCAGATTCACTGCAACTTTAGGGAGATAAGATTTACCATGATAACTTCAATCCGGCCCATTGCGA
32553850 CTTTAGGA
131 CTTTAGGA
* *
32553858 GTATAGGATTTTTTAGCTTCAATCTACTGCACTGCAACTTCATG-GAGATAAGATTTGTAGCTTT
1 GTATAGGA-TTTTTAGCTTCAATCTACTCCACTGCAACTTCA-GAAAGATAAGATTTGTAGCTTT
* * *
32553922 AAT-ATATTCCACTGCAACTTTAGGGAGATAAGATTTGCTATGATAGA-TTCAATCCG
64 AATCAGATT-CACTGCAACTTTAGGGAGATAAGATTTACCATGATA-ACTTCAATCCG
32553978 ATCCACTGCA
Statistics
Matches: 108, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
138 11 0.10
139 95 0.88
140 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (138 bp):
GTATAGGATTTTTAGCTTCAATCTACTCCACTGCAACTTCAGAAAGATAAGATTTGTAGCTTTAA
TCAGATTCACTGCAACTTTAGGGAGATAAGATTTACCATGATAACTTCAATCCGGCCCATTGCGA
CTTTAGGA
Found at i:32559336 original size:9 final size:9
Alignment explanation
Indices: 32559322--32559352 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32559312 GTTAAACGAA
32559322 TCGAGTTAT
1 TCGAGTTAT
*
32559331 TCGAGTTAA
1 TCGAGTTAT
32559340 TCGAGTTAT
1 TCGAGTTAT
32559349 TCGA
1 TCGA
32559353 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:32559423 original size:9 final size:9
Alignment explanation
Indices: 32559406--32559442 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
32559396 TGAGTTTTCG
32559406 AATTCGAAT
1 AATTCGAAT
*
32559415 AACTCGAAT
1 AATTCGAAT
32559424 AATTCGAAT
1 AATTCGAAT
32559433 AATTCGAAT
1 AATTCGAAT
32559442 A
1 A
32559443 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:32559690 original size:30 final size:31
Alignment explanation
Indices: 32559656--32559715 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
32559646 AAACCTTTTA
*
32559656 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* * *
32559686 TTTTCTCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
32559716 TCTCACCTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:32561135 original size:25 final size:28
Alignment explanation
Indices: 32561083--32561137 Score: 71
Period size: 25 Copynumber: 2.1 Consensus size: 28
32561073 TTTAAAATAT
* *
32561083 TTTTTAAAAATATATTTTTTATTTTTTA
1 TTTTTAAAAATATATTTTTTAGTGTTTA
32561111 TTTTT-AAAATAT-TTTTTT-GTGTTTA
1 TTTTTAAAAATATATTTTTTAGTGTTTA
32561136 TT
1 TT
32561138 AAAAATCGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 7 0.28
26 6 0.24
27 7 0.28
28 5 0.20
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (28 bp):
TTTTTAAAAATATATTTTTTAGTGTTTA
Found at i:32566679 original size:17 final size:16
Alignment explanation
Indices: 32566645--32566697 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
32566635 GATTTGCTAT
32566645 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32566661 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
32566678 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32566694 TACA
1 TACA
32566698 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:32566819 original size:15 final size:15
Alignment explanation
Indices: 32566796--32566847 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
32566786 GTAAGTGGAC
*
32566796 TTGGATTTTTATTTT
1 TTGGTTTTTTATTTT
*
32566811 TTGG-TTTTTATATT
1 TTGGTTTTTTATTTT
*
32566825 CT-GTTTGTTTATTTT
1 TTGGTTT-TTTATTTT
32566840 TTGGTTTT
1 TTGGTTTT
32566848 AAGCTGGCGA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
13 1 0.03
14 12 0.40
15 13 0.43
16 4 0.13
ACGTcount: A:0.10, C:0.02, G:0.15, T:0.73
Consensus pattern (15 bp):
TTGGTTTTTTATTTT
Found at i:32568509 original size:3 final size:3
Alignment explanation
Indices: 32568488--32568545 Score: 55
Period size: 3 Copynumber: 19.3 Consensus size: 3
32568478 ATAATAGGAC
* ** * *
32568488 AAT AAT AAC AAT GAA- AAT AAT AAT TGT GAT AAT AAT AAT ACT AAT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32568533 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
32568546 TCTAAATTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
2 2 0.05
3 40 0.91
4 2 0.05
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:32568591 original size:12 final size:12
Alignment explanation
Indices: 32568574--32568622 Score: 64
Period size: 12 Copynumber: 3.9 Consensus size: 12
32568564 GAAAGTAGCA
32568574 AATAAATAAAAG
1 AATAAATAAAAG
32568586 AATAAATAAAAG
1 AATAAATAAAAG
32568598 -ATACAATAAAAG
1 AATA-AATAAAAG
32568610 AAAATAAATAAAA
1 --AATAAATAAAA
32568623 AGAAGCCGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
11 3 0.09
12 20 0.61
14 7 0.21
15 3 0.09
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (12 bp):
AATAAATAAAAG
Found at i:32568927 original size:52 final size:53
Alignment explanation
Indices: 32568830--32568933 Score: 138
Period size: 52 Copynumber: 1.9 Consensus size: 53
32568820 AAAAAAAACG
* * *
32568830 AAATAGATAAAATATGTATACAAAATGTTAAGTTTAAATATTTTAAGAGTAAAAA
1 AAATAGATAAAATA--TATACAAAATATTAAATTTAAATATTTTAAAAGTAAAAA
**
32568885 AAATAGATAAAATA-ATACCTAATATTAAATTTAAATATTTTAAAAGTAA
1 AAATAGATAAAATATATACAAAATATTAAATTTAAATATTTTAAAAGTAA
32568934 GAGAATGATA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
52 30 0.68
55 14 0.32
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.34
Consensus pattern (53 bp):
AAATAGATAAAATATATACAAAATATTAAATTTAAATATTTTAAAAGTAAAAA
Found at i:32571611 original size:2 final size:2
Alignment explanation
Indices: 32571604--32571641 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
32571594 TGTAGCTTGT
32571604 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32571642 AATTATTTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32575397 original size:23 final size:22
Alignment explanation
Indices: 32575357--32575399 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
32575347 ATTAAATTTT
* *
32575357 AAAATTTGAAATATAAAAATTA
1 AAAATTTAAAATAAAAAAATTA
32575379 AAAATTTTAAAATAAAAAAAT
1 AAAA-TTTAAAATAAAAAAAT
32575400 ATTTCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (22 bp):
AAAATTTAAAATAAAAAAATTA
Found at i:32580744 original size:19 final size:17
Alignment explanation
Indices: 32580710--32580744 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
32580700 CTAAAATAGT
32580710 AACAAAATTAACAATAA
1 AACAAAATTAACAATAA
32580727 AACAAGAATTATACAATA
1 AACAA-AATTA-ACAATA
32580745 TCCAAACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (17 bp):
AACAAAATTAACAATAA
Found at i:32583474 original size:13 final size:13
Alignment explanation
Indices: 32583456--32583482 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32583446 CCTACTTGTG
32583456 TCATGGTTCACAT
1 TCATGGTTCACAT
32583469 TCATGGTTCACAT
1 TCATGGTTCACAT
32583482 T
1 T
32583483 TAAGACTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (13 bp):
TCATGGTTCACAT
Found at i:32584536 original size:28 final size:28
Alignment explanation
Indices: 32584491--32584547 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 28
32584481 AAAAGTGTCC
32584491 ATACTTTAAGCAATGTACAAATACTTTA
1 ATACTTTAAGCAATGTACAAATACTTTA
32584519 ATACTTTAAGCGAA-GTACAAATACTTTA
1 ATACTTTAAGC-AATGTACAAATACTTTA
32584547 A
1 A
32584548 GTAAACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 26 0.93
29 2 0.07
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (28 bp):
ATACTTTAAGCAATGTACAAATACTTTA
Found at i:32588091 original size:193 final size:191
Alignment explanation
Indices: 32587756--32588131 Score: 463
Period size: 193 Copynumber: 2.0 Consensus size: 191
32587746 GTAATCTATA
* * **
32587756 ATGGGTTTAAGTCATTGATTTTCATTTGTAGCTTTGTGATTAAAACACAATTATTACTTGAATGG
1 ATGGGTTCAAGTCATTGATTTTCATTTGTAACTTTGTGATTAAAACACAACAATTACTTGAATGG
* * * * * * *
32587821 AAATGCATTTGCATCTGTGTATCCTGCAATGCTATTTAATTGAACTTTGGGGTTGGAATTGTTAT
66 AAATGCACTTGCATCTGTATATCCTGCAAAGCTATTTAA-TCAACTTTGGAGTTGAAATAGTTAT
* *
32587886 TAGGAAGTAATTGATGTTTTTATGT-TGATGTTAATGAATACAATAGACTAAGTTGAATTTTTT
130 TAGGAAGTAATTGATGTTTTT-T-TATGATGTTAATGAACACAATAGACCAAGTTGAATTTTTT
* * *
32587949 ATGGGTTCGAGTCATTGGTTTTCATTTG-AACTTTGTGATTACAACACAACAATTTACTTGAATG
1 ATGGGTTCAAGTCATTGATTTTCATTTGTAACTTTGTGATTAAAACACAACAA-TTACTTGAATG
** * *
32588013 GAAATGCACTTGTGT-TTTCATATCCTGCAAAGCTTCTTTAGA-CAACTTTGGAGTTGAAATAGT
65 GAAATGCACTTGCATCTGT-ATATCCTGCAAAGC-TATTTA-ATCAACTTTGGAGTTGAAATAGT
* *
32588076 TATTAGGATGTAATTGATGTTTTTTTATGATGTTAATGAACATAATAGACCAAGTT
127 TATTAGGAAGTAATTGATGTTTTTTTATGATGTTAATGAACACAATAGACCAAGTT
32588132 TGGGACCTTT
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
191 1 0.01
192 49 0.31
193 100 0.64
194 5 0.03
195 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (191 bp):
ATGGGTTCAAGTCATTGATTTTCATTTGTAACTTTGTGATTAAAACACAACAATTACTTGAATGG
AAATGCACTTGCATCTGTATATCCTGCAAAGCTATTTAATCAACTTTGGAGTTGAAATAGTTATT
AGGAAGTAATTGATGTTTTTTTATGATGTTAATGAACACAATAGACCAAGTTGAATTTTTT
Found at i:32597194 original size:15 final size:15
Alignment explanation
Indices: 32597174--32597215 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
32597164 AATTAAACAC
*
32597174 TAATAAAAATGATCA
1 TAATAATAATGATCA
* *
32597189 TAATAATAATAATGA
1 TAATAATAATGATCA
32597204 TAATAATAATGA
1 TAATAATAATGA
32597216 AATGTATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (15 bp):
TAATAATAATGATCA
Found at i:32597197 original size:18 final size:18
Alignment explanation
Indices: 32597174--32597213 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
32597164 AATTAAACAC
*
32597174 TAATAAAAATGATCATAA
1 TAATAAAAATGATAATAA
*
32597192 TAATAATAATGATAATAA
1 TAATAAAAATGATAATAA
32597210 TAAT
1 TAAT
32597214 GAAATGTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.33
Consensus pattern (18 bp):
TAATAAAAATGATAATAA
Found at i:32597206 original size:12 final size:12
Alignment explanation
Indices: 32597191--32597215 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32597181 AATGATCATA
32597191 ATAATAATAATG
1 ATAATAATAATG
32597203 ATAATAATAATG
1 ATAATAATAATG
32597215 A
1 A
32597216 AATGTATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
ATAATAATAATG
Found at i:32598208 original size:28 final size:28
Alignment explanation
Indices: 32598154--32598208 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
32598144 AAGGGTTGTA
* *
32598154 AAAATAAAAAAAAACATAAAAATAAAAT
1 AAAATAAAAAAAAACACAAAAACAAAAT
* *
32598182 AAAATAAAACAAAACACAAGAACAAAA
1 AAAATAAAAAAAAACACAAAAACAAAA
32598209 AATATAAGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.80, C:0.09, G:0.02, T:0.09
Consensus pattern (28 bp):
AAAATAAAAAAAAACACAAAAACAAAAT
Found at i:32599521 original size:90 final size:90
Alignment explanation
Indices: 32599368--32599546 Score: 340
Period size: 90 Copynumber: 2.0 Consensus size: 90
32599358 ACCAAATGAG
*
32599368 CACTTTCAAACTTAATCATGCTTCAACCTTTTTTCCTTTTGCACACAATGAGAAATGAGCTCATT
1 CACTTTCAAACTTAATCATGCTTCAACCTTTTTTCCTCTTGCACACAATGAGAAATGAGCTCATT
32599433 TAGAGTCTATTTCTCCTTTTGACAA
66 TAGAGTCTATTTCTCCTTTTGACAA
*
32599458 CACTTTCAGACTTAATCATGCTTCAACCTTTTTTCCTCTTGCACACAATGAGAAATGAGCTCATT
1 CACTTTCAAACTTAATCATGCTTCAACCTTTTTTCCTCTTGCACACAATGAGAAATGAGCTCATT
32599523 TAGAGTCTATTTCTCCTTTTGACA
66 TAGAGTCTATTTCTCCTTTTGACA
32599547 GTTGTAACTT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 87 1.00
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.39
Consensus pattern (90 bp):
CACTTTCAAACTTAATCATGCTTCAACCTTTTTTCCTCTTGCACACAATGAGAAATGAGCTCATT
TAGAGTCTATTTCTCCTTTTGACAA
Found at i:32604725 original size:2 final size:2
Alignment explanation
Indices: 32604718--32604760 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
32604708 AAATAATTTC
32604718 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32604760 A
1 A
32604761 AAAGAGGGTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32606537 original size:3 final size:3
Alignment explanation
Indices: 32606529--32606564 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
32606519 AAAGAAATTA
32606529 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32606565 TAGTTAATAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:32613231 original size:159 final size:153
Alignment explanation
Indices: 32612942--32613303 Score: 413
Period size: 159 Copynumber: 2.3 Consensus size: 153
32612932 ATGAAATTCG
* * * * * * **
32612942 ATCAGTTCTTGATACATGTATTCAACTCAGCCTCAACACGTATTTATAATGAAAGTTTATCATCT
1 ATCAGTTCATGATACATGCATTCAGCTCAGCCTCAGCACATATTTGTTGTGAAAGTTTATCATCT
* * * * *
32613007 TTATGCAGACGTTGATGTTGTCAAGCCTTCTTCCATCTTCCATCCGACCATGGTTGATCACGGAT
66 TTATGCAGACATTAATGATGTCAAGCCTACTCCCATCTTCCATCCGACCATGGTTGATCACGGAT
32613072 TTGATTTCCGCACTCAATGGCACATATCC
131 TTGATTTCCG---T-AA--GCACATATCC
* * *
32613101 ATCAGTTCATGAGACATGCATTCAGCTCAGCCTCAGCACATATTTGTTGTGAAATTTTTTCATCT
1 ATCAGTTCATGATACATGCATTCAGCTCAGCCTCAGCACATATTTGTTGTGAAAGTTTATCATCT
* * * **
32613166 TTATGCA-ACCATTAATGATGTCGATCCTACTCCCA-CTTCCAGTCTGACCATGGTTGATTGCGG
66 TTATGCAGA-CATTAATGATGTCAAGCCTACTCCCATCTTCCA-TCCGACCATGGTTGATCACGG
*
32613229 ATTTGATTTCCGTGAGCACATATCC
129 ATTTGATTTCCGTAAGCACATATCC
* **
32613254 ATCATTTCATGATACATGCATTCAGCAAAGCCTCAGCACATATTTGTTGT
1 ATCAGTTCATGATACATGCATTCAGCTCAGCCTCAGCACATATTTGTTGT
32613304 CCATAACCTT
Statistics
Matches: 175, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
153 56 0.32
155 1 0.01
156 1 0.01
158 7 0.04
159 110 0.63
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.35
Consensus pattern (153 bp):
ATCAGTTCATGATACATGCATTCAGCTCAGCCTCAGCACATATTTGTTGTGAAAGTTTATCATCT
TTATGCAGACATTAATGATGTCAAGCCTACTCCCATCTTCCATCCGACCATGGTTGATCACGGAT
TTGATTTCCGTAAGCACATATCC
Found at i:32614107 original size:2 final size:2
Alignment explanation
Indices: 32614100--32614127 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32614090 ATTTGAATCT
32614100 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32614128 GGTTAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32615894 original size:22 final size:23
Alignment explanation
Indices: 32615856--32615899 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
32615846 TGATAACCTA
*
32615856 TAATCTATTTAATTATA-ATATG
1 TAATCTATCTAATTATATATATG
32615878 TAATCTATCT-ATCTATATATAT
1 TAATCTATCTAAT-TATATATAT
32615900 ATATGTGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 2 0.11
22 13 0.68
23 4 0.21
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (23 bp):
TAATCTATCTAATTATATATATG
Found at i:32631573 original size:115 final size:113
Alignment explanation
Indices: 32631349--32631574 Score: 362
Period size: 115 Copynumber: 2.0 Consensus size: 113
32631339 ATTTTTGGGT
* *
32631349 CAAAATTAAAATGCTTAAATTAAATTAGTACTTTTTTGAGGGGCCAAATTAAAAAAAATTAATTT
1 CAAAATTAAAATGCTTAAATTAAATTACTACTTTTTAGAGGGGCCAAATTAAAAAAAATTAATTT
* * *
32631414 GACCGAAGTCTAAAAAAGGTTAAATTGAATTTTTTTAAGTTTTGGGGC
66 GACCAAAGTCTAAAAAAGGTAAAATTGAATTTTTTTAAGGTTTGGGGC
* *
32631462 CAAAGTTAAAATGCTTAAATTAAATTACTACTTTTTAGAGGGGCCACAATTAAAAAAAAATTCAT
1 CAAAATTAAAATGCTTAAATTAAATTACTACTTTTTAGAGGGGCCA-AATT-AAAAAAAATTAAT
*
32631527 TTGACCAAAGTCTAAGAAAGGTAAAATTGAATTTTTTTAAGGTTTGGG
64 TTGACCAAAGTCTAAAAAAGGTAAAATTGAATTTTTTTAAGGTTTGGG
32631575 AGGGGCTAGA
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
113 43 0.42
114 4 0.04
115 56 0.54
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (113 bp):
CAAAATTAAAATGCTTAAATTAAATTACTACTTTTTAGAGGGGCCAAATTAAAAAAAATTAATTT
GACCAAAGTCTAAAAAAGGTAAAATTGAATTTTTTTAAGGTTTGGGGC
Found at i:32632116 original size:2 final size:2
Alignment explanation
Indices: 32632109--32632142 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
32632099 TGGTCCTTAG
32632109 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
32632143 CTCCTCCTNN
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:32634475 original size:19 final size:19
Alignment explanation
Indices: 32634448--32634498 Score: 50
Period size: 20 Copynumber: 2.7 Consensus size: 19
32634438 AAAGCTTTAT
* *
32634448 TTTAATATTTTTCATAAGC
1 TTTACTATTTTTCACAAGC
*
32634467 TTTACTATTATTACACAAGC
1 TTTACTATT-TTTCACAAGC
*
32634487 TTTTCT-TTTTTC
1 TTTACTATTTTTC
32634499 TTTAACTTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 3 0.12
19 10 0.38
20 13 0.50
ACGTcount: A:0.25, C:0.16, G:0.04, T:0.55
Consensus pattern (19 bp):
TTTACTATTTTTCACAAGC
Found at i:32637401 original size:2 final size:2
Alignment explanation
Indices: 32637394--32637424 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
32637384 TCAATTCTTT
32637394 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32637425 TTTTTCATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32640186 original size:17 final size:17
Alignment explanation
Indices: 32640160--32640197 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
32640150 GAAAATGACT
*
32640160 TAAAAGTATA-TCAAATA
1 TAAAACTATATTCAAA-A
32640177 TAAAACTATATTCAAAA
1 TAAAACTATATTCAAAA
32640194 TAAA
1 TAAA
32640198 TATCGAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.29
Consensus pattern (17 bp):
TAAAACTATATTCAAAA
Found at i:32640459 original size:12 final size:12
Alignment explanation
Indices: 32640442--32640484 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
32640432 CTCTTAAACC
32640442 TATTTAAATTAA
1 TATTTAAATTAA
32640454 TATTTATAATTAA
1 TATTTA-AATTAA
*
32640467 -ATTTTAAATAAA
1 TA-TTTAAATTAA
32640479 TATTTA
1 TATTTA
32640485 TTAATTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 16 0.59
13 11 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
TATTTAAATTAA
Found at i:32650510 original size:12 final size:11
Alignment explanation
Indices: 32650477--32650510 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
32650467 ATTTAAAAAA
32650477 TAAAAAAAATT
1 TAAAAAAAATT
32650488 TAAGAAAAAATT
1 TAA-AAAAAATT
32650500 TAAAAATAAAT
1 TAAAAA-AAAT
32650511 AGCATGAAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (11 bp):
TAAAAAAAATT
Found at i:32652931 original size:25 final size:23
Alignment explanation
Indices: 32652903--32652948 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
32652893 CATTGATTAA
*
32652903 TAAAAAATATTTTAAAAATATATGT
1 TAAAAAATA-ATT-AAAATATATGT
*
32652928 TAAATAATAATTAAAATATAT
1 TAAAAAATAATTAAAATATAT
32652949 TAAATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
24 2 0.11
25 8 0.42
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (23 bp):
TAAAAAATAATTAAAATATATGT
Found at i:32652951 original size:21 final size:22
Alignment explanation
Indices: 32652917--32652962 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
32652907 AAATATTTTA
32652917 AAAATATATGTTAAATA-ATAATT
1 AAAATATA-GTTAAATATAT-ATT
32652940 AAAATATA-TTAAATATATATT
1 AAAATATAGTTAAATATATATT
32652961 AA
1 AA
32652963 GTATATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 12 0.55
22 2 0.09
23 8 0.36
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAATATAGTTAAATATATATT
Found at i:32652972 original size:13 final size:11
Alignment explanation
Indices: 32652918--32652970 Score: 65
Period size: 11 Copynumber: 4.9 Consensus size: 11
32652908 AATATTTTAA
*
32652918 AAATATATGTT
1 AAATATATATT
32652929 AAATA-ATAATT
1 AAATATAT-ATT
32652940 AAA-ATATATT
1 AAATATATATT
32652950 AAATATATATT
1 AAATATATATT
*
32652961 AAGTATATAT
1 AAATATATAT
32652971 ATCAAAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
10 9 0.24
11 28 0.76
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (11 bp):
AAATATATATT
Found at i:32654926 original size:30 final size:30
Alignment explanation
Indices: 32654892--32654996 Score: 86
Period size: 31 Copynumber: 3.4 Consensus size: 30
32654882 CTTTAATTTT
*
32654892 TTTTTTAAAATTTCAATTAGACTTCTCAAA
1 TTTTTTAAAATTTTAATTAGACTTCTCAAA
* * * *
32654922 TTTTTTTGTAAATTTTAATTAAACCTCTAAAA
1 -TTTTTT-AAAATTTTAATTAGACTTCTCAAA
* * *
32654954 TTTTTGAAAGTTTTAATTAGAACTGC-CAAAA
1 TTTTTTAAAATTTTAATTAG-ACTTCTC-AAA
*
32654985 TTATTTAAAATT
1 TTTTTTAAAATT
32654997 CTCATTAAAA
Statistics
Matches: 56, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
30 11 0.20
31 26 0.46
32 19 0.34
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.47
Consensus pattern (30 bp):
TTTTTTAAAATTTTAATTAGACTTCTCAAA
Found at i:32654926 original size:32 final size:32
Alignment explanation
Indices: 32654852--32654958 Score: 92
Period size: 32 Copynumber: 3.3 Consensus size: 32
32654842 TTAACTCGAT
* *
32654852 TAAAATTCTTTTGTTAAATTCTC-ATTAAATCT-
1 TAAAATTTTTTTG-TAAATT-TCAATTAAACCTC
* * * * *
32654884 TTAATTTTTTTTTTAAAATTTCAATTAGACTTC
1 TAAAATTTTTTTGT-AAATTTCAATTAAACCTC
* *
32654917 TCAAATTTTTTTGTAAATTTTAATTAAACCTC
1 TAAAATTTTTTTGTAAATTTCAATTAAACCTC
32654949 TAAAATTTTT
1 TAAAATTTTT
32654959 GAAAGTTTTA
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
31 3 0.05
32 44 0.76
33 11 0.19
ACGTcount: A:0.34, C:0.10, G:0.03, T:0.53
Consensus pattern (32 bp):
TAAAATTTTTTTGTAAATTTCAATTAAACCTC
Found at i:32654985 original size:31 final size:30
Alignment explanation
Indices: 32654924--32655020 Score: 76
Period size: 31 Copynumber: 3.2 Consensus size: 30
32654914 TTCTCAAATT
*
32654924 TTTTTGTAAATTTTAATTAAACCTCTAAAA
1 TTTTTGTAAATTTTAATTAAACCTCCAAAA
32654954 TTTTTG-AAAGTTTTAATTAGAA-CTGCCAAAA
1 TTTTTGTAAA-TTTTAATTA-AACCT-CCAAAA
* * *
32654985 TTATTT-AAAATTCTCATTAAAACC-CTCAAAA
1 TT-TTTGTAAATTTTAATT-AAACCTC-CAAAA
32655016 TTTTT
1 TTTTT
32655021 AAAAATTTAG
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
29 3 0.05
30 21 0.38
31 24 0.43
32 8 0.14
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.43
Consensus pattern (30 bp):
TTTTTGTAAATTTTAATTAAACCTCCAAAA
Found at i:32666136 original size:14 final size:13
Alignment explanation
Indices: 32666109--32666133 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32666099 AATAAATTAG
32666109 TTTTTTAAATAAT
1 TTTTTTAAATAAT
32666122 TTTTTTAAATAA
1 TTTTTTAAATAA
32666134 ATTAATAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTTTAAATAAT
Found at i:32666140 original size:21 final size:22
Alignment explanation
Indices: 32666116--32666157 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
32666106 TAGTTTTTTA
*
32666116 AATAATTTTTTTAAA-TAAATT
1 AATAATTTTTTAAAATTAAATT
32666137 AATAATTTTTTAAAATTAAAT
1 AATAATTTTTTAAAATTAAAT
32666158 GATTAAAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AATAATTTTTTAAAATTAAATT
Found at i:32668667 original size:11 final size:11
Alignment explanation
Indices: 32668651--32668675 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32668641 AATGAATTTA
32668651 ATTAAATGCTC
1 ATTAAATGCTC
32668662 ATTAAATGCTC
1 ATTAAATGCTC
32668673 ATT
1 ATT
32668676 TCCACTTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (11 bp):
ATTAAATGCTC
Found at i:32670882 original size:27 final size:27
Alignment explanation
Indices: 32670852--32670925 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
32670842 ATGAAATGCT
* *
32670852 CCGAAGAGCCACTATCATTAAGTTGCA
1 CCGAAGTGCCACTATCACTAAGTTGCA
* * *
32670879 CCGAAGTGCCTCTATCACTGATTTGCA
1 CCGAAGTGCCACTATCACTAAGTTGCA
* *
32670906 CCAAAGTGCCACAATCACTA
1 CCGAAGTGCCACTATCACTA
32670926 TATGCATTGA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (27 bp):
CCGAAGTGCCACTATCACTAAGTTGCA
Found at i:32674467 original size:36 final size:32
Alignment explanation
Indices: 32674424--32674511 Score: 133
Period size: 31 Copynumber: 2.7 Consensus size: 32
32674414 AATTTATATC
32674424 TACTATTTATATTATTGAATTAAATTTCATATTTTG
1 TACTATTTATATTATT-AATT---TTTCATATTTTG
32674460 TACTATTTATATTATTAA-TTTTCATATTTTG
1 TACTATTTATATTATTAATTTTTCATATTTTG
32674491 TACTATTTATATTATTAATTT
1 TACTATTTATATTATTAATTT
32674512 GTTTAATCAC
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
31 30 0.59
32 2 0.04
34 1 0.02
35 2 0.04
36 16 0.31
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (32 bp):
TACTATTTATATTATTAATTTTTCATATTTTG
Done.