Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 111 of 168
Found at i:32674648 original size:18 final size:19
Alignment explanation
Indices: 32674605--32674649 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
32674595 AGTATCAATT
*
32674605 TCACATTTTATTTTAAAAA
1 TCACATTTTATTTAAAAAA
*
32674624 T-AAATTTTA-TTAAAAAA
1 TCACATTTTATTTAAAAAA
32674641 TCACATTTT
1 TCACATTTT
32674650 TTACCTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 8 0.36
18 13 0.59
19 1 0.05
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (19 bp):
TCACATTTTATTTAAAAAA
Found at i:32675493 original size:15 final size:14
Alignment explanation
Indices: 32675450--32675506 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 14
32675440 AGGTAAATTA
*
32675450 CCTTTTCTTTCTTT
1 CCTTTTCTTTTTTT
*
32675464 CGTTCTTTCTTTTTTT
1 C-CT-TTTCTTTTTTT
*
32675480 TCTTTTCATTTTTTT
1 CCTTTTC-TTTTTTT
32675495 CCTTTT-TTTTTT
1 CCTTTTCTTTTTT
32675507 CTGTTTGTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
13 6 0.17
14 5 0.14
15 14 0.40
16 10 0.29
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (14 bp):
CCTTTTCTTTTTTT
Found at i:32676414 original size:104 final size:102
Alignment explanation
Indices: 32676197--32676423 Score: 267
Period size: 104 Copynumber: 2.2 Consensus size: 102
32676187 AATCTTTGCC
* * * *
32676197 CTAGATACGAAAATTCAGGATCCTAGAGACAAATGTTTTAGGGAAAACAAAGAGTGTGTAATATA
1 CTAGATACGAAAA-TCAGGGTCCTAGAGACAAATATTTTAGGGAAAACAAAGAGTGTATAACATA
32676262 GGTTACAAACATTTGAACATTGATCGATGGTCAAGATT
65 GGTTACAAACATTTGAACATTGATCGATGGTCAAGATT
* * * * * * *
32676300 CAAAAAACGAAAATCAGGGTCCTGGTGATAAATATTTTAGGGAAAACTAAGAGTTTGTATAACAT
1 CTAGATACGAAAATCAGGGTCCTAGAGACAAATATTTTAGGGAAAACAAAGAG--TGTATAACAT
* ** * *
32676365 AGGTTACAATCATTTGAATGTTGATCGATGTTCAAAGCTT
64 AGGTTACAAACATTTGAACATTGATCGATGGTC-AAGATT
32676405 -TAGATACGAAAATCAGGGT
1 CTAGATACGAAAATCAGGGT
32676424 TTGAGCAATA
Statistics
Matches: 102, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
102 34 0.33
103 10 0.10
104 53 0.52
105 5 0.05
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.28
Consensus pattern (102 bp):
CTAGATACGAAAATCAGGGTCCTAGAGACAAATATTTTAGGGAAAACAAAGAGTGTATAACATAG
GTTACAAACATTTGAACATTGATCGATGGTCAAGATT
Found at i:32682221 original size:8 final size:8
Alignment explanation
Indices: 32682202--32682234 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
32682192 TCTTTTATAA
32682202 TTTGATTTT
1 TTTGA-TTT
32682211 TTTGATTT
1 TTTGATTT
32682219 TTTGA-TT
1 TTTGATTT
32682226 TTTGATTT
1 TTTGATTT
32682234 T
1 T
32682235 ACTTTTTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.30
8 11 0.48
9 5 0.22
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (8 bp):
TTTGATTT
Found at i:32684129 original size:13 final size:13
Alignment explanation
Indices: 32684097--32684137 Score: 73
Period size: 13 Copynumber: 3.1 Consensus size: 13
32684087 GGATCAAGTG
32684097 AGAATATCTAAAA
1 AGAATATCTAAAA
32684110 TAGAATATCTAAAA
1 -AGAATATCTAAAA
32684124 AGAATATCTAAAA
1 AGAATATCTAAAA
32684137 A
1 A
32684138 TGGATGAAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 14 0.52
14 13 0.48
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.24
Consensus pattern (13 bp):
AGAATATCTAAAA
Found at i:32685879 original size:13 final size:13
Alignment explanation
Indices: 32685861--32685927 Score: 89
Period size: 13 Copynumber: 5.2 Consensus size: 13
32685851 AGTTCTTCAT
32685861 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
32685874 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
** *
32685887 TGCAATGGAAAAG
1 TGCTTTTGAAAAG
*
32685900 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
32685913 TTCTTTTGAAAAG
1 TGCTTTTGAAAAG
32685926 TG
1 TG
32685928 GTTTAAAATT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:32691270 original size:19 final size:19
Alignment explanation
Indices: 32691241--32691289 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
32691231 GTCCCTCTAC
32691241 TTTGTATTTTTCTTTT-ATAA
1 TTTG-ATTTTT-TTTTGATAA
**
32691261 TTTGATTTTTTTTTGATTT
1 TTTGATTTTTTTTTGATAA
32691280 TTTGATTTTT
1 TTTGATTTTT
32691290 GATTTTACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 4 0.15
19 18 0.69
20 4 0.15
ACGTcount: A:0.14, C:0.02, G:0.08, T:0.76
Consensus pattern (19 bp):
TTTGATTTTTTTTTGATAA
Found at i:32704107 original size:6 final size:6
Alignment explanation
Indices: 32704091--32704150 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
32704081 TTATGCCTAA
*
32704091 AAAAAC AAAAAAC AAAAAC AAAAAC AAAAA- AGAAAAC AAAAA- AGAAAAG
1 AAAAAC -AAAAAC AAAAAC AAAAAC AAAAAC A-AAAAC AAAAAC A-AAAAC
*
32704140 AAAAAG AAAAA
1 AAAAAC AAAAA
32704151 TCAAGATGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
5 2 0.04
6 39 0.80
7 8 0.16
ACGTcount: A:0.85, C:0.08, G:0.07, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:32704115 original size:19 final size:18
Alignment explanation
Indices: 32704091--32704150 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
32704081 TTATGCCTAA
32704091 AAAAACAAAAAACAAAAAC
1 AAAAACAAAAAA-AAAAAC
*
32704110 AAAAACAAAAAAGAAAAC
1 AAAAACAAAAAAAAAAAC
* *
32704128 AAAAA-AGAAAAGAAAAAG
1 AAAAACA-AAAAAAAAAAC
32704146 AAAAA
1 AAAAA
32704151 TCAAGATGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
17 1 0.03
18 23 0.64
19 12 0.33
ACGTcount: A:0.85, C:0.08, G:0.07, T:0.00
Consensus pattern (18 bp):
AAAAACAAAAAAAAAAAC
Found at i:32704150 original size:17 final size:17
Alignment explanation
Indices: 32704105--32704143 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
32704095 ACAAAAAACA
*
32704105 AAAACAAAAACAAAAAAG
1 AAAACAAAAA-AGAAAAG
32704123 AAAACAAAAAAGAAAAG
1 AAAACAAAAAAGAAAAG
32704140 AAAA
1 AAAA
32704144 AGAAAAATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAACAAAAAAGAAAAG
Found at i:32705182 original size:79 final size:77
Alignment explanation
Indices: 32704990--32705635 Score: 540
Period size: 79 Copynumber: 8.3 Consensus size: 77
32704980 AGAATTATAA
* * * ** *
32704990 TTTTCAATTTTTGTCTCTT-AAAAATCAACTCATATTGTAAGAGGTGAGTTGAGCCTCGGGT--C
1 TTTTCAATTTCTGT-TTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCAC
32705052 ACGCTGAGGTA--
65 ACGCTGAGGTATT
* * *
32705063 TTTTCAATTTCTGTTTTTCAAAAAAAAATTAACTCTTATTGCGAGAGGTGAGTTGAGCCTCAGGT
1 TTTTCAATTTCTGTTTTTC----AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGT
32705128 CACACGCTGAGGTATTT
62 CACACGCTGAGGTA-TT
* * * * * *
32705145 CTTTTAAATTTCTATTTTTCAAAAATCAAATCATATTGCGAAAGGTGAGTTGAGCCTCGGGT--C
1 -TTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCAC
32705208 ACGCTGAGGTA--
65 ACGCTGAGGTATT
*
32705219 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGAT
1 TTTTCAATTTCTGTTTTTC----AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGT
32705284 CACACGCTGAGGTATTT
62 CACACGCTGAGGTA-TT
* * * * * *
32705301 CTTTTAAATTTCTATTTTTCAAAAATCAAATCATAATGCGAGAGGTGAGTTGAGCCCCAGGCCGC
1 -TTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCAC
*
32705366 ACGCCGAGGTA--
65 ACGCTGAGGTATT
* ** * * *
32705377 TTTTCAATTTCTATATTTTTTTTTAAAATCAACTCATAATGCGAGAGGTGAGTTAAGCCTCGGGC
1 TTTTCAATTTC----TGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGT
* * *
32705442 CGCATGCCGAGGTA--
62 CACACGCTGAGGTATT
*
32705456 TTTTCAATTTCTGTTATTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TTTTCAATTTCTG-T-TTTTC------AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC
* **
32705521 -GG-GACACGCCAAGGTATT
58 AGGTCACACGCTGAGGTATT
* * *
32705539 TTCTCAATTTATGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC--G-AAGC
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCA-C
* *
32705601 ATGCTGAGGCA--
65 ACGCTGAGGTATT
*
32705612 TTTTCAATTTCTATTTTTCAAAAA
1 TTTTCAATTTCTGTTTTTCAAAAA
32705636 AAACAATAAT
Statistics
Matches: 479, Mismatches: 58, Indels: 72
0.79 0.10 0.12
Matches are distributed among these distances:
72 3 0.01
73 51 0.11
74 2 0.00
75 56 0.12
76 1 0.00
77 90 0.19
79 178 0.37
81 15 0.03
82 3 0.01
83 80 0.17
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCACA
CGCTGAGGTATT
Found at i:32705279 original size:156 final size:156
Alignment explanation
Indices: 32705009--32705595 Score: 692
Period size: 156 Copynumber: 3.7 Consensus size: 156
32704999 TTTGTCTCTT
* * *
32705009 AAAAATCAACTCATATTG-TAAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTCAATTT
1 AAAAATCAAATCATATTGCGAA-AGGTGAGTTGAGCCTCGGGTCACGCCGAGGTATTTTCAATTT
* * *
32705073 CTGTTTTTCAAAAAAAAATTAACTCTTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGA
65 CTGTTTTTCAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGA
32705138 GGTATTTCTTTTAAATTTCTATTTTTC
130 GGTATTTCTTTTAAATTTCTATTTTTC
*
32705165 AAAAATCAAATCATATTGCGAAAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAAATCATATTGCGAAAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTATTTTCAATTTC
*
32705230 TGTTTTTCAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAG
66 TGTTTTTCAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAG
32705295 GTATTTCTTTTAAATTTCTATTTTTC
131 GTATTTCTTTTAAATTTCTATTTTTC
* * *
32705321 AAAAATCAAATCATAATGCGAGAGGTGAGTTGAGCCCCAGGCCG-CACGCCGAGGTATTTTCAAT
1 AAAAATCAAATCATATTGCGAAAGGTGAGTTGAGCCTC-GG--GTCACGCCGAGGTATTTTCAAT
* ***** * * * * *
32705385 TTCTATATTTT-TTTTTAAAATCAACTCATAATGCGAGAGGTGAGTTAAGCCTCGGGCCGCATGC
63 TTCTGT-TTTTCAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCACACGC
* * *
32705449 CGAGGTA----TTTTCAATTTCTGTTATTTTC
127 TGAGGTATTTCTTTTAAATTTCT-AT-TTTTC
* * * *
32705477 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCCAAGGTATTTTC
1 ------AAAAATCAAATCATATTGCGAAAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTA-TTT-
*
32705542 TCAATTTATGTTTTTC----AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC
58 TCAATTTCTGTTTTTCAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC
32705596 GAAGCATGCT
Statistics
Matches: 381, Mismatches: 33, Indels: 32
0.85 0.07 0.07
Matches are distributed among these distances:
154 11 0.03
155 1 0.00
156 187 0.49
157 4 0.01
158 108 0.28
159 6 0.02
160 11 0.03
161 9 0.02
162 44 0.12
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (156 bp):
AAAAATCAAATCATATTGCGAAAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTATTTTCAATTTC
TGTTTTTCAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAG
GTATTTCTTTTAAATTTCTATTTTTC
Found at i:32705776 original size:5 final size:5
Alignment explanation
Indices: 32705766--32705829 Score: 56
Period size: 5 Copynumber: 12.0 Consensus size: 5
32705756 GTAGTTCATG
* * *
32705766 TTTTA TTTTA TTTTA TTTTA TCTTA TTTTA TATATA TGTATTT TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA T-T-TTA TTTTA
*
32705814 TTGTTA TATTA TTTTA
1 TT-TTA TTTTA TTTTA
32705830 AATTATGATT
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
5 35 0.74
6 10 0.21
7 2 0.04
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.72
Consensus pattern (5 bp):
TTTTA
Found at i:32705828 original size:34 final size:31
Alignment explanation
Indices: 32705776--32705841 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 31
32705766 TTTTATTTTA
* *
32705776 TTTTATTTTATCTTATTTTATATATATGTATTT
1 TTTTATTTTATATTATTTTAAAT-TATG-ATTT
32705809 TTTTATTGTTATATTATTTTAAATTATGATTT
1 TTTTATT-TTATATTATTTTAAATTATGATTT
32705841 T
1 T
32705842 CTGGGCCGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
32 5 0.17
33 11 0.37
34 14 0.47
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.68
Consensus pattern (31 bp):
TTTTATTTTATATTATTTTAAATTATGATTT
Found at i:32706150 original size:29 final size:29
Alignment explanation
Indices: 32706116--32706184 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 29
32706106 AATATTTTGT
*
32706116 AAATTACATTTAGGCCCTAAACTTTCTAG
1 AAATTACATTTAGGCCCCAAACTTTCTAG
** * * *
32706145 AAATTACATTTTTGCCCCATATTTTCTTG
1 AAATTACATTTAGGCCCCAAACTTTCTAG
32706174 AAATTACATTT
1 AAATTACATTT
32706185 TTACCCCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (29 bp):
AAATTACATTTAGGCCCCAAACTTTCTAG
Found at i:32706697 original size:9 final size:9
Alignment explanation
Indices: 32706679--32706742 Score: 60
Period size: 9 Copynumber: 7.0 Consensus size: 9
32706669 GGTTCGGCCC
*
32706679 GAAGAGAAA
1 GAAGAAAAA
32706688 GAAGAAAAA
1 GAAGAAAAA
32706697 GAGAGAAGAAA
1 GA-AGAA-AAA
*
32706708 -AAGAGAAA
1 GAAGAAAAA
32706716 GAA-AAGAAA
1 GAAGAA-AAA
32706725 GAAGAAAAA
1 GAAGAAAAA
*
32706734 AAAGAAAAA
1 GAAGAAAAA
32706743 ATATATATCA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
8 4 0.09
9 32 0.70
10 7 0.15
11 3 0.07
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (9 bp):
GAAGAAAAA
Found at i:32706705 original size:13 final size:13
Alignment explanation
Indices: 32706687--32706733 Score: 71
Period size: 13 Copynumber: 3.8 Consensus size: 13
32706677 CCGAAGAGAA
32706687 AGAAGAAAAAGAG
1 AGAAGAAAAAGAG
32706700 AGAAGAAAAAGAG
1 AGAAGAAAAAGAG
*
32706713 A-AAG-AAAAGAA
1 AGAAGAAAAAGAG
32706724 AGAAGAAAAA
1 AGAAGAAAAA
32706734 AAAGAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 7 0.23
12 6 0.19
13 18 0.58
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
AGAAGAAAAAGAG
Found at i:32706725 original size:28 final size:27
Alignment explanation
Indices: 32706680--32706738 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 27
32706670 GTTCGGCCCG
*
32706680 AAGAGAAAGAAGAAAAAGAGAGAAGAAA
1 AAGAGAAAGAAGAAAAAGA-AGAAAAAA
32706708 AAGAGAAAGAA-AAGAAAGAAGAAAAAA
1 AAGAGAAAGAAGAA-AAAGAAGAAAAAA
32706735 AAGA
1 AAGA
32706739 AAAAATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 13 0.45
28 16 0.55
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (27 bp):
AAGAGAAAGAAGAAAAAGAAGAAAAAA
Found at i:32707596 original size:19 final size:18
Alignment explanation
Indices: 32707574--32707773 Score: 140
Period size: 18 Copynumber: 10.9 Consensus size: 18
32707564 TTTGTTTTTT
*
32707574 AAAAATTTTCATGTTTCA
1 AAAAATTTTCGTGTTTCA
** * * *
32707592 AAAAAAATTCTTGTGTCT
1 AAAAATTTTCGTGTTTCA
*
32707610 AAAAATTTTCGCGTTTTCA
1 AAAAATTTTCGTG-TTTCA
32707629 AAAAATTTTCGTGTTTCA
1 AAAAATTTTCGTGTTTCA
* *
32707647 AAAAATTTTCGCGTTTTAA
1 AAAAATTTTCGTG-TTTCA
*
32707666 AAAAAATTTCGTGTTTCA
1 AAAAATTTTCGTGTTTCA
*
32707684 AAAAA-TCTCGTGTTTTCAAA
1 AAAAATTTTCGTG-TTTC--A
* **
32707704 AAAAGATTCTCGCATTTC-
1 AAAA-ATTTTCGTGTTTCA
32707722 AAAAA-TTTCGTGTTTTCA
1 AAAAATTTTCGTG-TTTCA
*
32707740 AAAATTATTATCGTG-TT-A
1 AAAA--ATTTTCGTGTTTCA
*
32707758 CAAAATTTTCGTGTTT
1 AAAAATTTTCGTGTTT
32707774 TTAAAAAAAT
Statistics
Matches: 143, Mismatches: 26, Indels: 27
0.73 0.13 0.14
Matches are distributed among these distances:
16 12 0.08
17 13 0.09
18 64 0.45
19 32 0.22
20 6 0.04
21 11 0.08
22 5 0.03
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.41
Consensus pattern (18 bp):
AAAAATTTTCGTGTTTCA
Found at i:32707628 original size:37 final size:37
Alignment explanation
Indices: 32707573--32707782 Score: 175
Period size: 37 Copynumber: 5.7 Consensus size: 37
32707563 ATTTGTTTTT
* *
32707573 TAAAAATTTTCATG-TTTCAAAAAAAATTCTTGTGTC
1 TAAAAATTTTCGTGTTTTCAAAAAAAATTCTCGTGTC
* *
32707609 TAAAAATTTTCGCGTTTTC--AAAAAATTTTCGTGTTTC
1 TAAAAATTTTCGTGTTTTCAAAAAAAATTCTCGTG--TC
* * *
32707646 AAAAAATTTTCGCGTTTT-AAAAAAAATT-TCGTGTT
1 TAAAAATTTTCGTGTTTTCAAAAAAAATTCTCGTGTC
* * *
32707681 TCAAAAAATCTCGTGTTTTCAAAAAAAGATTCTCGCATTTC
1 T-AAAAATTTTCGTGTTTTCAAAAAAA-ATTCTCG--TGTC
** *
32707722 -AAAAA-TTTCGTGTTTTCAAAAATTATTATCGTGT-
1 TAAAAATTTTCGTGTTTTCAAAAAAAATTCTCGTGTC
*
32707756 TACAAAATTTTCGTGTTTTTAAAAAAA
1 TA-AAAATTTTCGTGTTTTCAAAAAAA
32707783 TCCCGTGTTT
Statistics
Matches: 140, Mismatches: 20, Indels: 27
0.75 0.11 0.14
Matches are distributed among these distances:
35 16 0.11
36 30 0.21
37 57 0.41
38 27 0.19
39 8 0.06
41 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (37 bp):
TAAAAATTTTCGTGTTTTCAAAAAAAATTCTCGTGTC
Found at i:32707669 original size:55 final size:54
Alignment explanation
Indices: 32707558--32707781 Score: 158
Period size: 55 Copynumber: 4.1 Consensus size: 54
32707548 AAAAAAAAGA
* * ** ** *
32707558 AAAAAATTT-GT-TTTT-TAAAAATTTTCATGTTTCAAAAAAAATTCTTGTGTCT
1 AAAAAATTTCGTGTTTTCAAAAAATTTTCGTGTTTCAAAAAATTTTCGCGT-TTT
* *
32707610 AAAAATTTTCGCGTTTTCAAAAAATTTTCGTGTTTCAAAAAATTTTCGCGTTTT
1 AAAAAATTTCGTGTTTTCAAAAAATTTTCGTGTTTCAAAAAATTTTCGCGTTTT
* * *
32707664 AAAAAAAATTTCGTG-TTTCAAAAAA-TCTCGTGTTTTCAAAAAAAGATTCTCGC-ATTT
1 --AAAAAATTTCGTGTTTTCAAAAAATTTTCGTG-TTTC--AAAAA-ATTTTCGCGTTTT
* * * *
32707721 CAAAAATTTCGTGTTTTCAAAAATTATTATCGTG-TT-ACAAAATTTTCGTGTTTTT
1 AAAAAATTTCGTGTTTTCAAAAA--ATTTTCGTGTTTCAAAAAATTTTCGCG-TTTT
32707776 AAAAAA
1 AAAAAA
32707782 ATCCCGTGTT
Statistics
Matches: 136, Mismatches: 21, Indels: 27
0.74 0.11 0.15
Matches are distributed among these distances:
52 8 0.06
53 7 0.05
54 16 0.12
55 61 0.45
56 20 0.15
57 10 0.07
58 8 0.06
59 6 0.04
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (54 bp):
AAAAAATTTCGTGTTTTCAAAAAATTTTCGTGTTTCAAAAAATTTTCGCGTTTT
Found at i:32711187 original size:27 final size:28
Alignment explanation
Indices: 32711140--32711192 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
32711130 TAAATTATCT
**
32711140 TTGAGTTTTTCTTTTTCAAGAATTTTTC
1 TTGAGTTTTTCTTTTAAAAGAATTTTTC
*
32711168 TTGAG-TTTTCTTTTAAAAGAGTTTT
1 TTGAGTTTTTCTTTTAAAAGAATTTT
32711193 AACAACCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.58
Consensus pattern (28 bp):
TTGAGTTTTTCTTTTAAAAGAATTTTTC
Found at i:32712430 original size:16 final size:16
Alignment explanation
Indices: 32712409--32712448 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
32712399 CCAAAATAAA
*
32712409 CCAAACTTGAAATGAT
1 CCAAACTCGAAATGAT
* *
32712425 CTAAACTCGAATTGAT
1 CCAAACTCGAAATGAT
32712441 CCAAACTC
1 CCAAACTC
32712449 AAAACGATAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.40, C:0.25, G:0.10, T:0.25
Consensus pattern (16 bp):
CCAAACTCGAAATGAT
Found at i:32713695 original size:2 final size:2
Alignment explanation
Indices: 32713688--32713715 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32713678 ATAAGATTTC
32713688 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32713716 GTAATAGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32714880 original size:3 final size:3
Alignment explanation
Indices: 32714872--32714896 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
32714862 GATAAGTACA
32714872 AGC AGC AGC AGC AGC AGC AGC AGC A
1 AGC AGC AGC AGC AGC AGC AGC AGC A
32714897 ACGGCAACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.32, T:0.00
Consensus pattern (3 bp):
AGC
Found at i:32715334 original size:30 final size:31
Alignment explanation
Indices: 32715278--32715339 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
32715268 TGAAAGTTGT
* *
32715278 CCAAAATATTATTTTTCAATTTTTAAGGTGTC
1 CCAAAATAATATTTTTCAACTTTTAAGG-GTC
32715310 CCAAAA-AATATTTTT-AACTTTTAAGGGTC
1 CCAAAATAATATTTTTCAACTTTTAAGGGTC
32715339 C
1 C
32715340 AAATTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 4 0.14
30 10 0.36
31 8 0.29
32 6 0.21
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.42
Consensus pattern (31 bp):
CCAAAATAATATTTTTCAACTTTTAAGGGTC
Found at i:32715394 original size:15 final size:15
Alignment explanation
Indices: 32715376--32715404 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32715366 CTTTAAAAAA
32715376 AAAGTTTTCTCTAAG
1 AAAGTTTTCTCTAAG
32715391 AAAGTTTTCTCTAA
1 AAAGTTTTCTCTAA
32715405 CTTTTAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.41
Consensus pattern (15 bp):
AAAGTTTTCTCTAAG
Found at i:32719443 original size:20 final size:19
Alignment explanation
Indices: 32719420--32719465 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
32719410 CTCTTTTTTT
32719420 TTAAAGACCTAATTTTTATG
1 TTAAA-ACCTAATTTTTATG
*
32719440 TTAAAACTTAATTTTTATG
1 TTAAAACCTAATTTTTATG
32719459 TTAAAAC
1 TTAAAAC
32719466 TCAATTTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.46
Consensus pattern (19 bp):
TTAAAACCTAATTTTTATG
Found at i:32719451 original size:19 final size:19
Alignment explanation
Indices: 32719429--32719473 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
32719419 TTTAAAGACC
32719429 TAATTTTTATGTTAAAACT
1 TAATTTTTATGTTAAAACT
32719448 TAATTTTTATGTTAAAACT
1 TAATTTTTATGTTAAAACT
*
32719467 CAATTTT
1 TAATTTT
32719474 AGAGTCTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (19 bp):
TAATTTTTATGTTAAAACT
Found at i:32726812 original size:17 final size:17
Alignment explanation
Indices: 32726790--32726825 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
32726780 TTGAAAACCG
32726790 TGCTAGATAAATACACA
1 TGCTAGATAAATACACA
*
32726807 TGCTAGATAAATACCCA
1 TGCTAGATAAATACACA
32726824 TG
1 TG
32726826 TTCAAGACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (17 bp):
TGCTAGATAAATACACA
Found at i:32731280 original size:2 final size:2
Alignment explanation
Indices: 32731273--32731304 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
32731263 TTTTTCATAA
32731273 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32731305 GTGTGTGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32732670 original size:13 final size:13
Alignment explanation
Indices: 32732654--32732683 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
32732644 TTGTATTGCA
*
32732654 TGTTTGATTTTCT
1 TGTTTGATTTCCT
32732667 TGTTTGATTTCCT
1 TGTTTGATTTCCT
32732680 TGTT
1 TGTT
32732684 AGACATGACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.10, G:0.17, T:0.67
Consensus pattern (13 bp):
TGTTTGATTTCCT
Found at i:32733535 original size:5 final size:5
Alignment explanation
Indices: 32733525--32733601 Score: 65
Period size: 5 Copynumber: 15.6 Consensus size: 5
32733515 AAAAAAATAT
* *
32733525 TATTA TATTA TAGTAA TGATTA TGTT- T-TTA TATTA TATTA TTATTA
1 TATTA TATTA TA-TTA T-ATTA TATTA TATTA TATTA TATTA -TATTA
32733571 -A-TA TATTA TATTA TATTA TA-TA TATATA TAT
1 TATTA TATTA TATTA TATTA TATTA TAT-TA TAT
32733602 CAAAAGAAAG
Statistics
Matches: 60, Mismatches: 3, Indels: 17
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.13
5 31 0.52
6 16 0.27
7 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
TATTA
Found at i:32733577 original size:19 final size:19
Alignment explanation
Indices: 32733553--32733601 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 19
32733543 ATTATGTTTT
32733553 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
32733572 TATATTATATTATATTATA
1 TATATTATATTATATTATA
32733591 TATATATATAT
1 TATAT-TATAT
32733602 CAAAAGAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.18
19 18 0.64
20 5 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:32735186 original size:6 final size:6
Alignment explanation
Indices: 32735175--32735216 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
32735165 NNNNNNNGAA
* *
32735175 TACTGT TACTGT TACTGT TACTGC TACCGT TACTGTT TACTG
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTG
32735217 ATCAGGTACT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:32738160 original size:38 final size:39
Alignment explanation
Indices: 32738105--32738211 Score: 123
Period size: 38 Copynumber: 2.8 Consensus size: 39
32738095 ATTTTATAGC
32738105 ATTATATATTATGATTTTAGTAAATTCATATCATA-ACAT
1 ATTATATATTATGATTTTAGTAAATTCATATCATATA-AT
* * ** *
32738144 -TTA-ATATTAAGAATTTTATTAAATT-ATATTTTATAGT
1 ATTATATATTATG-ATTTTAGTAAATTCATATCATATAAT
32738181 ATTATATATTATGATTTTAGTAAATTCATAT
1 ATTATATATTATGATTTTAGTAAATTCATAT
32738212 AAGAATTTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
37 14 0.25
38 31 0.55
39 11 0.20
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (39 bp):
ATTATATATTATGATTTTAGTAAATTCATATCATATAAT
Found at i:32738211 original size:22 final size:22
Alignment explanation
Indices: 32738185--32738233 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
32738175 TATAGTATTA
*
32738185 TATATTATG-ATTTTAGTAAAT
1 TATATTAAGAATTTTAGTAAAT
*
32738206 TCATA-TAAGAATTTTATTAAAT
1 T-ATATTAAGAATTTTAGTAAAT
32738228 TATATT
1 TATATT
32738234 TAATAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (22 bp):
TATATTAAGAATTTTAGTAAAT
Found at i:32738487 original size:16 final size:16
Alignment explanation
Indices: 32738466--32738501 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
32738456 TTGAATTGCT
32738466 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
32738482 ATTACGTCTCTATTCC
1 ATTACGCCTCTATTCC
32738498 ATTA
1 ATTA
32738502 TGGCGAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.31, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:32738677 original size:80 final size:80
Alignment explanation
Indices: 32738546--32738705 Score: 302
Period size: 80 Copynumber: 2.0 Consensus size: 80
32738536 TCAATTGAAT
*
32738546 TTTTTTTAATTTTTTTATCCTTAAACCTTAAATTTATAAGTAGATTTTTAAAAGAAATTGTAATT
1 TTTTTTTAATATTTTTATCCTTAAACCTTAAATTTATAAGTAGATTTTTAAAAGAAATTGTAATT
32738611 AAGACGATTTTTTAA
66 AAGACGATTTTTTAA
*
32738626 TTTTTTTACTATTTTTATCCTTAAACCTTAAATTTATAAGTAGATTTTTAAAAGAAATTGTAATT
1 TTTTTTTAATATTTTTATCCTTAAACCTTAAATTTATAAGTAGATTTTTAAAAGAAATTGTAATT
32738691 AAGACGATTTTTTAA
66 AAGACGATTTTTTAA
32738706 ATAAAAAAAA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.49
Consensus pattern (80 bp):
TTTTTTTAATATTTTTATCCTTAAACCTTAAATTTATAAGTAGATTTTTAAAAGAAATTGTAATT
AAGACGATTTTTTAA
Found at i:32739292 original size:17 final size:15
Alignment explanation
Indices: 32739271--32739305 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
32739261 GTGAAACTGT
* *
32739271 ATATATAATAATATA
1 ATATATAAAAAAATA
32739286 ATATATAAAAAAATA
1 ATATATAAAAAAATA
32739301 ATATA
1 ATATA
32739306 GAAATTAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
ATATATAAAAAAATA
Found at i:32739349 original size:22 final size:22
Alignment explanation
Indices: 32739323--32739368 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
32739313 GGAACTATCA
* *
32739323 TCGGTAATAGTAACTAATTCTT
1 TCGGTAACAATAACTAATTCTT
32739345 TCGGTAACAATAACTAATTCTT
1 TCGGTAACAATAACTAATTCTT
32739367 TC
1 TC
32739369 ATTACGAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (22 bp):
TCGGTAACAATAACTAATTCTT
Found at i:32740294 original size:30 final size:32
Alignment explanation
Indices: 32740259--32740340 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 32
32740249 TTATATATTT
32740259 AGAATTTAGTCCATTTTAC-TTTCAT-TTTCA
1 AGAATTTAGTCCATTTTACTTTTCATATTTCA
* *
32740289 AGAATTTATTCC-CTTTACTTTTCATATTTCA
1 AGAATTTAGTCCATTTTACTTTTCATATTTCA
* *
32740320 AAAATTCAAGTCCAATTTTAC
1 AGAATT-TAGTCC-ATTTTAC
32740341 CATAACTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
29 5 0.12
30 17 0.41
31 10 0.24
32 4 0.10
34 5 0.12
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.46
Consensus pattern (32 bp):
AGAATTTAGTCCATTTTACTTTTCATATTTCA
Found at i:32747143 original size:20 final size:20
Alignment explanation
Indices: 32747118--32747157 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32747108 CCCTTGGTCT
32747118 CCTTTTTCTTTTAGTTTTCG
1 CCTTTTTCTTTTAGTTTTCG
32747138 CCTTTTTCTTTTAGTTTTCG
1 CCTTTTTCTTTTAGTTTTCG
32747158 TTTCTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.05, C:0.20, G:0.10, T:0.65
Consensus pattern (20 bp):
CCTTTTTCTTTTAGTTTTCG
Found at i:32747516 original size:3 final size:3
Alignment explanation
Indices: 32747508--32747534 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32747498 GGTGCATCAA
32747508 TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT
32747535 ATTTTTGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:32752468 original size:27 final size:27
Alignment explanation
Indices: 32752438--32752491 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
32752428 GTTATGTGTG
*
32752438 TAATTACAAGTAATTATAATAAATTAC
1 TAATCACAAGTAATTATAATAAATTAC
** *
32752465 TAATCACGTGTAATTATAATTAATTAC
1 TAATCACAAGTAATTATAATAAATTAC
32752492 ATCTAAATCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.39
Consensus pattern (27 bp):
TAATCACAAGTAATTATAATAAATTAC
Found at i:32754534 original size:24 final size:24
Alignment explanation
Indices: 32754507--32754560 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
32754497 AATCAAAGTC
* *
32754507 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
32754531 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
32754555 AAATAT
1 AAATAT
32754561 TCTAGAAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:32757578 original size:2 final size:2
Alignment explanation
Indices: 32757571--32757598 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32757561 TAAAAACAAC
32757571 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32757599 TAAATCTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32760266 original size:24 final size:25
Alignment explanation
Indices: 32760233--32760279 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
32760223 TTATTTATTT
*
32760233 ATTTCATAATATAATAATTAATATA
1 ATTTCATAATATAATAATAAATATA
*
32760258 ATTT-ATAATTTAATAATAAATA
1 ATTTCATAATATAATAATAAATA
32760280 AAACCTTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATTTCATAATATAATAATAAATATA
Found at i:32762254 original size:24 final size:24
Alignment explanation
Indices: 32762212--32762263 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
32762202 AATCAAAGTC
** *
32762212 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
32762236 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
32762260 AAAT
1 AAAT
32762264 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:32764742 original size:29 final size:29
Alignment explanation
Indices: 32764675--32764749 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 29
32764665 TTTAATTAAA
*
32764675 AAAATCAAAGTTG-G-GGTCAAAATTCAAT
1 AAAATAAAAGTTGAGTGGT-AAAATTCAAT
* *
32764703 AAAATTTAAAGTTTAGTGGTAAAATTCAAT
1 AAAA-TAAAAGTTGAGTGGTAAAATTCAAT
32764733 AACAA-AAAAGTTGAGTG
1 AA-AATAAAAGTTGAGTG
32764750 TATATTTTAC
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
28 4 0.10
29 17 0.44
30 13 0.33
31 5 0.13
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (29 bp):
AAAATAAAAGTTGAGTGGTAAAATTCAAT
Found at i:32766900 original size:71 final size:71
Alignment explanation
Indices: 32766784--32766919 Score: 186
Period size: 71 Copynumber: 1.9 Consensus size: 71
32766774 ATGATTTCAT
* * * *
32766784 ACATATTTTTCGGTTTTATCGACTAGCGTAGAGCGCATCTATTGTCGGTTATACCGA-TCAGTGC
1 ACATATTTTTCGGTTCTACCGACCAGCGTAGAGCGCATCTATTGTCAGTTATACCGACT-AGTGC
32766848 TGGACAG
65 TGGACAG
* *
32766855 ACATATTTGTT-GGTTCTACCGACCAGCGTAGGGCGCATTTATTGTCAGTTATACCGACTAGTGC
1 ACATATTT-TTCGGTTCTACCGACCAGCGTAGAGCGCATCTATTGTCAGTTATACCGACTAGTGC
32766919 T
65 T
32766920 AGGCACACTC
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
71 54 0.95
72 3 0.05
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.34
Consensus pattern (71 bp):
ACATATTTTTCGGTTCTACCGACCAGCGTAGAGCGCATCTATTGTCAGTTATACCGACTAGTGCT
GGACAG
Found at i:32768072 original size:4 final size:4
Alignment explanation
Indices: 32768063--32768148 Score: 172
Period size: 4 Copynumber: 21.5 Consensus size: 4
32768053 TGTAACAATG
32768063 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
32768111 TACA TACA TACA TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TA
32768149 TCCTTAATTC
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 82 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:32772183 original size:19 final size:18
Alignment explanation
Indices: 32772154--32772213 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
32772144 AAATATCGAA
32772154 AAATTCAAAAAATATATAT
1 AAATTC-AAAAATATATAT
* * *
32772173 AATTTTTAAAATTATATTAT
1 AA-ATTCAAAAATATA-TAT
*
32772193 AAATTCAAAAATATATCT
1 AAATTCAAAAATATATAT
32772211 AAA
1 AAA
32772214 AGTTAAGGGG
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
18 5 0.16
19 20 0.62
20 7 0.22
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
AAATTCAAAAATATATAT
Found at i:32776747 original size:2 final size:2
Alignment explanation
Indices: 32776740--32776764 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32776730 TTTTCTCTTT
32776740 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
32776765 TTTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32776901 original size:25 final size:25
Alignment explanation
Indices: 32776848--32776902 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
32776838 CGATTTGATC
* *
32776848 AAATAAATTATTTAAAAAATTCATAA
1 AAATAAAATATTTAAAAAA-TCAGAA
32776874 AAATAAAATATTTAAAAAA-CAGAGA
1 AAATAAAATATTTAAAAAATCAGA-A
32776899 AAAT
1 AAAT
32776903 CAATTCAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 3 0.12
25 5 0.19
26 18 0.69
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (25 bp):
AAATAAAATATTTAAAAAATCAGAA
Found at i:32777420 original size:27 final size:28
Alignment explanation
Indices: 32777355--32777427 Score: 69
Period size: 27 Copynumber: 2.6 Consensus size: 28
32777345 ACTTGTGACG
32777355 AAAAAATTTAGGTACCAACTTTGAAGCAA
1 AAAAAATTTAGGTACC-ACTTTGAAGCAA
** * *
32777384 AATTAGTTTAGGTACCAC-TTGTAA-TAA
1 AAAAAATTTAGGTACCACTTTG-AAGCAA
*
32777411 AAAAAATTTAAGTACCA
1 AAAAAATTTAGGTACCA
32777428 AGATGGGAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
27 18 0.51
28 4 0.11
29 13 0.37
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (28 bp):
AAAAAATTTAGGTACCACTTTGAAGCAA
Found at i:32777799 original size:31 final size:31
Alignment explanation
Indices: 32777765--32777822 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
32777755 TTTTATACTT
32777765 TTTTTA-ATACTTTTT-AATTTTTAAAAATAA
1 TTTTTATATA-TTTTTAAATTTTTAAAAATAA
32777795 TTTTTATATATTTTTAAATTTTTAAAAA
1 TTTTTATATATTTTTAAATTTTTAAAAA
32777823 ATTCCAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (31 bp):
TTTTTATATATTTTTAAATTTTTAAAAATAA
Found at i:32778206 original size:6 final size:6
Alignment explanation
Indices: 32778195--32778219 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32778185 ATATTTTCTA
32778195 TAAATT TAAATT TAAATT TAAATT T
1 TAAATT TAAATT TAAATT TAAATT T
32778220 TTTATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TAAATT
Found at i:32778765 original size:17 final size:18
Alignment explanation
Indices: 32778738--32778792 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 18
32778728 ATTGAACCTG
32778738 TTTAATAATTTTTTTTAAT
1 TTTAAT-ATTTTTTTTAAT
* *
32778757 TTT-ATATTTTTATGAAT
1 TTTAATATTTTTTTTAAT
* *
32778774 TTTAATAATTTATTTAAT
1 TTTAATATTTTTTTTAAT
32778792 T
1 T
32778793 ATTTTTACTC
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
17 13 0.45
18 13 0.45
19 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTAATATTTTTTTTAAT
Found at i:32780122 original size:10 final size:10
Alignment explanation
Indices: 32780107--32780173 Score: 50
Period size: 10 Copynumber: 6.6 Consensus size: 10
32780097 AACAAATAAT
32780107 TAAAAAATTA
1 TAAAAAATTA
32780117 TAAAAATATT-
1 TAAAAA-ATTA
32780127 TAAATAAA--A
1 TAAA-AAATTA
*
32780136 TAAAATAATTT
1 TAAAA-AATTA
32780147 TAAAAAATATA
1 TAAAAAAT-TA
**
32780158 TAAAAGTTTA
1 TAAAAAATTA
32780168 TAAAAA
1 TAAAAA
32780174 TTAGCATGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
8 1 0.02
9 6 0.13
10 21 0.47
11 17 0.38
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:32780129 original size:20 final size:20
Alignment explanation
Indices: 32780100--32780162 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
32780090 TCACGTCAAC
*
32780100 AAATAATTAAAAAATTATAA
1 AAATATTTAAAAAATTATAA
*
32780120 AAATATTTAAATAAAATA-AA
1 AAATATTTAAA-AAATTATAA
32780140 ATAAT-TTTAAAAAATATATAA
1 A-AATATTTAAAAAAT-TATAA
32780161 AA
1 AA
32780163 GTTTATAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
19 3 0.08
20 22 0.61
21 11 0.31
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AAATATTTAAAAAATTATAA
Found at i:32780142 original size:18 final size:18
Alignment explanation
Indices: 32780100--32780155 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 18
32780090 TCACGTCAAC
32780100 AAATAA-TTAAAAAATTATA
1 AAATAATTTAAAAAA--ATA
32780119 AAA-ATATTTAAATAAAATA
1 AAATA-ATTTAAA-AAAATA
*
32780138 AAATAATTTTAAAAAATA
1 AAATAATTTAAAAAAATA
32780156 TATAAAAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
18 7 0.22
19 16 0.50
20 6 0.19
21 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATAATTTAAAAAAATA
Found at i:32784726 original size:6 final size:6
Alignment explanation
Indices: 32784715--32784739 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32784705 AGCTTTATTA
32784715 CGTGTT CGTGTT CGTGTT CGTGTT C
1 CGTGTT CGTGTT CGTGTT CGTGTT C
32784740 ATTTCCGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.20, G:0.32, T:0.48
Consensus pattern (6 bp):
CGTGTT
Found at i:32797290 original size:35 final size:35
Alignment explanation
Indices: 32797230--32797361 Score: 158
Period size: 35 Copynumber: 3.7 Consensus size: 35
32797220 GATTGGAGTT
* * * *
32797230 GCTCTTATGAGTATTAGTGTATTTCGGAGGGATTA
1 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
32797265 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
1 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
* **
32797300 GCTCTTACGAGCATTGGTGTGTTTCAGATAGATT-
1 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
* *
32797334 GATTCTTATGAGCATATGGTGTGTTTCG
1 G-CTCTTACGAGCAT-TGGTGTGTTTCG
32797362 ATTGGATTGT
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
34 1 0.01
35 73 0.86
36 11 0.13
ACGTcount: A:0.20, C:0.12, G:0.30, T:0.39
Consensus pattern (35 bp):
GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
Found at i:32800590 original size:5 final size:5
Alignment explanation
Indices: 32800580--32800604 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
32800570 ACTACACTTC
32800580 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
32800605 GAATAAGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:32805340 original size:40 final size:40
Alignment explanation
Indices: 32805284--32805359 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
32805274 TGTTTAAAAT
* *
32805284 AAATATTTAATTAGATAAACATAAAATTTAAAAATTAGAA
1 AAATATTTAATCAGATAAACAGAAAATTTAAAAATTAGAA
* * *
32805324 AAATGTTTAATCAGATAAATAGAAATTTTAAAAATT
1 AAATATTTAATCAGATAAACAGAAAATTTAAAAATT
32805360 TTATTTTTCC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.34
Consensus pattern (40 bp):
AAATATTTAATCAGATAAACAGAAAATTTAAAAATTAGAA
Found at i:32808262 original size:40 final size:40
Alignment explanation
Indices: 32808176--32808264 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 40
32808166 CAGGGGACGT
* *
32808176 GTCAGCAAATCGCATCCACGTCAGCGCAGTTTGCTGACAT
1 GTCAGCAAATCGCATCCACGTAAGCGCAGTTTGCTGACAC
* * * * *
32808216 GGCAGCAAATTGCTTCCACGTAAGCGCGGTTTG-TGTCCAC
1 GTCAGCAAATCGCATCCACGTAAGCGCAGTTTGCTG-ACAC
32808256 GTCAGCAAA
1 GTCAGCAAA
32808265 GCACGCTGAC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
39 2 0.05
40 38 0.95
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (40 bp):
GTCAGCAAATCGCATCCACGTAAGCGCAGTTTGCTGACAC
Found at i:32808470 original size:23 final size:22
Alignment explanation
Indices: 32808428--32808492 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 22
32808418 AACTAATCCT
32808428 CTCTCAATTT-TCCTCTAAATTTC
1 CTCTCAATTTCT-CTC-AAATTTC
32808451 CTCTCAATTTGCTCTCAAA-TTC
1 CTCTCAATTT-CTCTCAAATTTC
32808473 CT-TCCAAATTTCTCTCAAAT
1 CTCT-C-AATTTCTCTCAAAT
32808493 CCATATTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
21 1 0.03
22 14 0.38
23 18 0.49
24 3 0.08
25 1 0.03
ACGTcount: A:0.25, C:0.31, G:0.02, T:0.43
Consensus pattern (22 bp):
CTCTCAATTTCTCTCAAATTTC
Found at i:32808491 original size:11 final size:11
Alignment explanation
Indices: 32808427--32808492 Score: 57
Period size: 11 Copynumber: 5.9 Consensus size: 11
32808417 AAACTAATCC
*
32808427 TCTCTCAATTT
1 TCTCTCAAATT
32808438 TC-CTCTAAATT
1 TCTCTC-AAATT
32808449 TCCTCTC-AATT
1 T-CTCTCAAATT
32808460 TGCTCTCAAATT
1 T-CTCTCAAATT
*
32808472 CCT-TCCAAATT
1 TCTCT-CAAATT
32808483 TCTCTCAAAT
1 TCTCTCAAAT
32808493 CCATATTTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
10 4 0.09
11 32 0.71
12 6 0.13
13 3 0.07
ACGTcount: A:0.24, C:0.30, G:0.02, T:0.44
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:32808510 original size:51 final size:51
Alignment explanation
Indices: 32808452--32808551 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
32808442 CTAAATTTCC
*
32808452 TCTCAATTTGCTCTCAAATTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTACTCTCAAATTCCTCT-CAAATTTCTCTCAAATCCATATTTAA
* * * *
32808503 TCTCAATTTACTCTCAAGTTCCTCTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTACTCTCAAATTCCTCTCAAATTTCTCTCAAATCCATATTT
32808552 TTAAATAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.02, T:0.44
Consensus pattern (51 bp):
TCTCAATTTACTCTCAAATTCCTCTCAAATTTCTCTCAAATCCATATTTAA
Found at i:32808586 original size:13 final size:14
Alignment explanation
Indices: 32808560--32808589 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
32808550 TTTTAAATAA
32808560 TTTTTAAAATTTTT
1 TTTTTAAAATTTTT
32808574 TTTTTAAAATTTTT
1 TTTTTAAAATTTTT
32808588 TT
1 TT
32808590 AAACCGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTTAAAATTTTT
Found at i:32809704 original size:7 final size:7
Alignment explanation
Indices: 32809692--32809717 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32809682 TAGTCGATTG
32809692 GTATTTA
1 GTATTTA
32809699 GTATTTA
1 GTATTTA
32809706 GTATTTA
1 GTATTTA
32809713 GTATT
1 GTATT
32809718 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:32811036 original size:22 final size:22
Alignment explanation
Indices: 32810990--32811424 Score: 490
Period size: 22 Copynumber: 20.0 Consensus size: 22
32810980 CCCTCACTTT
*
32810990 AACCCTTAACTTAAAACCCCT-
1 AACCCTTAACTTAAAAACCCTA
* *
32811011 AACCCTTAAATTAAAAACCATA
1 AACCCTTAACTTAAAAACCCTA
*
32811033 AACCCTTAACTTAAAAACCATA
1 AACCCTTAACTTAAAAACCCTA
* * *
32811055 AACCCTTAACCTAAAAAACAT-
1 AACCCTTAACTTAAAAACCCTA
32811076 AACCCTTAACTTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTA
*
32811098 AACCCTTAACTTAAAAACTCTA
1 AACCCTTAACTTAAAAACCCTA
32811120 AACCCTTAACTTAAAAAACCCTA
1 AACCCTTAACTT-AAAAACCCTA
* * *
32811143 ACCCCTTAAATTAAAAACCATA
1 AACCCTTAACTTAAAAACCCTA
32811165 AACCCTTAACTTAAAAACCCT-
1 AACCCTTAACTTAAAAACCCTA
*
32811186 AACCCTTAACTTAAAAACTCT-
1 AACCCTTAACTTAAAAACCCTA
*
32811207 AACCCTTTAAATTAAAAACCCTA
1 AACCC-TTAACTTAAAAACCCTA
* *
32811230 AACCCTTAAATTAAAAACCTTA
1 AACCCTTAACTTAAAAACCCTA
* *
32811252 AACCCATAAATTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTA
* *
32811274 AGCCTTTAACTTAAAAACCCT-
1 AACCCTTAACTTAAAAACCCTA
* *
32811295 AACCCTTAACTTTAAAATCCTA
1 AACCCTTAACTTAAAAACCCTA
* * * * *
32811317 ATCCCTTAATTTTAAAATCGT-
1 AACCCTTAACTTAAAAACCCTA
* *
32811338 AACCTTTAAATTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTA
* * *
32811360 AACCCTTAACTTTAAAATCGT-
1 AACCCTTAACTTAAAAACCCTA
* *
32811381 AACCCTTAAATAAAAAACCCT-
1 AACCCTTAACTTAAAAACCCTA
*
32811402 AACACTTAACTTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTA
32811424 A
1 A
32811425 CTTAAATATA
Statistics
Matches: 353, Mismatches: 53, Indels: 15
0.84 0.13 0.04
Matches are distributed among these distances:
21 127 0.36
22 202 0.57
23 24 0.07
ACGTcount: A:0.46, C:0.27, G:0.01, T:0.26
Consensus pattern (22 bp):
AACCCTTAACTTAAAAACCCTA
Found at i:32811043 original size:43 final size:42
Alignment explanation
Indices: 32810989--32811425 Score: 473
Period size: 43 Copynumber: 10.1 Consensus size: 42
32810979 ACCCTCACTT
* *
32810989 TAACCCTTAACTTAAAACCCCTAACCCTTAAATTAAAAACCA
1 TAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCA
* * *
32811031 TAAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAACA
1 T-AACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCA
32811075 TAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACTC-
1 TAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAAC-CA
*
32811118 TAAACCCTTAACTTAAAAAACCCTAACCCCTTAAATTAAAAACCA
1 T-AACCCTTAACTT-AAAAACCCTAA-CCCTTAACTTAAAAACCA
32811163 TAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACTC-
1 T-AACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAAC-CA
* * *
32811206 TAACCCTTTAAATTAAAAACCCTAAACCCTTAAATTAAAAACCT
1 TAACCC-TTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCA
* * * *
32811250 TAAACCCATAAATTAAAAACCCTAAGCCTTTAACTTAAAAACCC
1 T-AACCCTTAACTTAAAAACCCTAA-CCCTTAACTTAAAAACCA
* * * * * *
32811294 TAACCCTTAACTTTAAAATCCTAATCCCTTAATTTTAAAATCG
1 TAACCCTTAACTTAAAAACCCTAA-CCCTTAACTTAAAAACCA
* * * * *
32811337 TAACCTTTAAATTAAAAACCCTAAACCCTTAACTTTAAAATCG
1 TAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCA
* * * *
32811380 TAACCCTTAAATAAAAAACCCTAACACTTAACTTAAAAACCC
1 TAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCA
32811422 TAAC
1 TAAC
32811426 TTAAATATAA
Statistics
Matches: 344, Mismatches: 37, Indels: 28
0.84 0.09 0.07
Matches are distributed among these distances:
42 26 0.08
43 178 0.52
44 97 0.28
45 43 0.12
ACGTcount: A:0.46, C:0.27, G:0.01, T:0.26
Consensus pattern (42 bp):
TAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCA
Found at i:32811062 original size:65 final size:64
Alignment explanation
Indices: 32810990--32811424 Score: 525
Period size: 65 Copynumber: 6.7 Consensus size: 64
32810980 CCCTCACTTT
* *
32810990 AACCCTTAACTTAAAACCCCTAACCCTTAAATTAAAAACCATAAACCCTTAACTTAAAAACCATA
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACC-TA
* * * *
32811055 AACCCTTAACCTAAAAAACATAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACTCTA
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAAC-CTA
*
32811120 AACCCTTAACTTAAAAAACCCTAACCCCTTAAATTAAAAACCATAAACCCTTAACTTAAAAACCC
1 AACCCTTAACTT-AAAAACCCTAA-CCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAA-CC
32811185 T-
63 TA
* *
32811186 AACCCTTAACTTAAAAACTCTAACCCTTTAAATTAAAAACCCTAAACCCTTAAATTAAAAACCTT
1 AACCCTTAACTTAAAAACCCTAACCC-TTAAATTAAAAACCCTAAACCCTTAACTTAAAAACC-T
32811251 A
64 A
* * * * *
32811252 AACCCATAAATTAAAAACCCTAAGCCTTTAACTTAAAAACCCT-AACCCTTAACTTTAAAATCCT
1 AACCCTTAACTTAAAAACCCTAA-CCCTTAAATTAAAAACCCTAAACCCTTAAC-TTAAAAACCT
32811316 A
64 A
* * * * * * * *
32811317 ATCCCTTAATTTTAAAATCGTAACCTTTAAATTAAAAACCCTAAACCCTTAACTTTAAAATCGT-
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAAC-TTAAAAACCTA
* * * *
32811381 AACCCTTAAATAAAAAACCCTAACACTTAACTTAAAAACCCTAA
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAA
32811425 CTTAAATATA
Statistics
Matches: 322, Mismatches: 38, Indels: 21
0.85 0.10 0.06
Matches are distributed among these distances:
64 58 0.18
65 159 0.49
66 65 0.20
67 39 0.12
68 1 0.00
ACGTcount: A:0.46, C:0.27, G:0.01, T:0.26
Consensus pattern (64 bp):
AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCTA
Found at i:32815043 original size:127 final size:125
Alignment explanation
Indices: 32814607--32815128 Score: 726
Period size: 126 Copynumber: 4.2 Consensus size: 125
32814597 CCCAAACATG
* ** * *
32814607 CTACTGTAGCAAAAGCGCGTCCACGTGGGCTTGATTTCACAAATTATTCTCATAAAGCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * * * *
32814672 TAGAAGCG-ATTTTATACTATTTGCTCAAAAACGTCAAGTCAAAATTATTTTTCCAAGAT
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
* * *
32814731 CTACTGTAGCAAAAACGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCA-AATAGCATCTTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAA-AGCATCCTG
* * * * ** *
32814795 CTTGCAGCATTGTTTTATACTATTTGCTCAGAAATGTCAACTCAAAATTATTTTTTTAGGAC
65 CTTGAAGCGTT-TTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
* * *
32814857 CTACTGTAGCAAAAGTGCGTCCACGTGGG-AGCAATTTCACAAATTCTTCTCATAAAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCAG-GATTTCACAAATTCTTCTCATAAAGCATCCTG
*
32814921 CTTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGAC
65 CTTGAAGCG-TTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTT-TTCCAAGAC
* *
32814984 CAACTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAAAGCATCTTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAAAGCATCCTGC
*
32815049 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGAC
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
32815109 CTACTGTAGCAAAAGCGCGT
1 CTACTGTAGCAAAAGCGCGT
32815129 ACATGTGGGC
Statistics
Matches: 350, Mismatches: 40, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
123 2 0.01
124 60 0.17
125 29 0.08
126 182 0.52
127 75 0.21
128 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
Found at i:32815115 original size:252 final size:250
Alignment explanation
Indices: 32814607--32815175 Score: 800
Period size: 252 Copynumber: 2.3 Consensus size: 250
32814597 CCCAAACATG
*** * *
32814607 CTACTGTAGCAAAAGCGCGTCCACGTGGGCTTGATTTCACAAATTATTCTCATAAAGCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * * * *
32814672 TAGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAGTCAAAATTATTTTTCCAAGATCTACTG
66 TTGAAGCGATTTTAAACTATTTGCTCAAAAACCTCAACTCAAAATTATTTTTCCAAGACCAACTG
*
32814737 TAGCAAAAACGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCTTGCTTGCAG
131 TAGCAAAAACGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCTTGCTTGAAG
* * ** *
32814802 CATTGTTTTATACTATTTGCTCAGAAATGTCAACTCAAAATTATTTTTTTAGGAC
196 CATTGTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
* *
32814857 CTACTGTAGCAAAAGTGCGTCCACGTGGGAGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
* *
32814922 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGACCAA
66 TTGAAGCG--ATTTTAAACTATTTGCTCAAAAACCTCAACTCAAAATTATTT-TTCCAAGACCAA
* *
32814987 CTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAA-AGCATCTTGCTT
128 CTGTAGCAAAAACGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCA-AATAGCATCTTGCTT
* *
32815051 GAAGCGTT-TTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGAC
192 GAAGCATTGTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
* * * * * * *
32815109 CTACTGTAGCAAAAGCGCGTACATGTGGGCGCAACTTCAAAAATCCTTCTGATAAATCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
32815174 TT
66 TT
32815176 TGATTTTATC
Statistics
Matches: 281, Mismatches: 34, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
250 65 0.23
252 139 0.49
253 75 0.27
254 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (250 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGATTTTAAACTATTTGCTCAAAAACCTCAACTCAAAATTATTTTTCCAAGACCAACTG
TAGCAAAAACGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCTTGCTTGAAG
CATTGTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
Found at i:32815301 original size:9 final size:9
Alignment explanation
Indices: 32815289--32815322 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
32815279 TATTTTTTTT
32815289 CTAAAAACC
1 CTAAAAACC
*
32815298 CTAAAAATC
1 CTAAAAACC
32815307 CTAAAAACC
1 CTAAAAACC
32815316 CTAAAAA
1 CTAAAAA
32815323 TCATAATGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.59, C:0.26, G:0.00, T:0.15
Consensus pattern (9 bp):
CTAAAAACC
Found at i:32815312 original size:18 final size:18
Alignment explanation
Indices: 32815289--32815324 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
32815279 TATTTTTTTT
32815289 CTAAAAACCCTAAAAATC
1 CTAAAAACCCTAAAAATC
32815307 CTAAAAACCCTAAAAATC
1 CTAAAAACCCTAAAAATC
32815325 ATAATGTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.17
Consensus pattern (18 bp):
CTAAAAACCCTAAAAATC
Found at i:32823282 original size:23 final size:25
Alignment explanation
Indices: 32823241--32823302 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 25
32823231 ACAATTGGAC
32823241 TTCATATTTTTTTGTTTTTA-GTAAT
1 TTCA-ATTTTTTTGTTTTTATGTAAT
*
32823266 TT-AATTTTTTCTG-TTTTATGTTAT
1 TTCAATTTTTT-TGTTTTTATGTAAT
32823290 TTCAACTTTTTTT
1 TTCAA-TTTTTTT
32823303 TTCTCTCTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
23 12 0.38
24 9 0.28
25 5 0.16
26 6 0.19
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.69
Consensus pattern (25 bp):
TTCAATTTTTTTGTTTTTATGTAAT
Found at i:32826986 original size:51 final size:51
Alignment explanation
Indices: 32826880--32826997 Score: 123
Period size: 51 Copynumber: 2.3 Consensus size: 51
32826870 TGTGTAAATG
* * * * ** *
32826880 TTGACAG-ATGTGTAAATTTTGCAGGTTAAATTTGTTAAATCAGGATCAAG
1 TTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAATAAAAATCAAA
*
32826930 CTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAATTAAAAAT-AAA
1 TTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAA-TAAAAATCAAA
* *
32826981 TTGACAAAAGGTGTAAA
1 TTGACAGAATGTGTAAA
32826998 CTTTGAGGGT
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
50 6 0.11
51 45 0.82
52 4 0.07
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (51 bp):
TTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAATAAAAATCAAA
Found at i:32829825 original size:27 final size:27
Alignment explanation
Indices: 32829762--32829824 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
32829752 TTGGTTTAAG
**
32829762 AAAATATTTTATATTTTTAATCTTCAA
1 AAAATATTTTATATTTTTAAAATTCAA
*
32829789 AAAATATTTTCTATTTTTAAAATT-AA
1 AAAATATTTTATATTTTTAAAATTCAA
*
32829815 AAAATTTTTT
1 AAAATATTTT
32829825 TTCAAAGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 11 0.34
27 21 0.66
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (27 bp):
AAAATATTTTATATTTTTAAAATTCAA
Found at i:32835119 original size:20 final size:20
Alignment explanation
Indices: 32835096--32835136 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32835086 TTATATATAC
32835096 AATATAATGTAAATATTTAA
1 AATATAATGTAAATATTTAA
* *
32835116 AATATATTGTATATATTTAA
1 AATATAATGTAAATATTTAA
32835136 A
1 A
32835137 TTTTAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
AATATAATGTAAATATTTAA
Found at i:32835841 original size:18 final size:17
Alignment explanation
Indices: 32835820--32835854 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32835810 GAGAATTGAG
32835820 AAAAATATATATTATTTC
1 AAAAATATATATT-TTTC
*
32835838 AAAATTATATATTTTTC
1 AAAAATATATATTTTTC
32835855 CATCTTTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (17 bp):
AAAAATATATATTTTTC
Found at i:32842610 original size:18 final size:20
Alignment explanation
Indices: 32842587--32842629 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
32842577 CATATACATG
32842587 CATACATTTT-A-TAATACA
1 CATACATTTTAATTAATACA
32842605 CATACATTTTAATTAATACA
1 CATACATTTTAATTAATACA
32842625 CATAC
1 CATAC
32842630 TTATACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.43
19 1 0.04
20 12 0.52
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (20 bp):
CATACATTTTAATTAATACA
Found at i:32844957 original size:19 final size:19
Alignment explanation
Indices: 32844933--32844977 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
32844923 TTTTTCTTTT
*
32844933 TGCATT-CATTTCATACATA
1 TGCATTACATTGCAT-CATA
32844952 TGCATTACATTGCATCATA
1 TGCATTACATTGCATCATA
*
32844971 TGAATTA
1 TGCATTA
32844978 GATTTTCACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (19 bp):
TGCATTACATTGCATCATA
Found at i:32849048 original size:24 final size:24
Alignment explanation
Indices: 32849016--32849073 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
32849006 ATGTCCCTAA
32849016 ATTACAGTGGACTGAACCTTGAAG
1 ATTACAGTGGACTGAACCTTGAAG
* * *
32849040 ATTATAGTGGATTGAACTTTGAAG
1 ATTACAGTGGACTGAACCTTGAAG
32849064 ATTACAGTGG
1 ATTACAGTGG
32849074 GGCAGTCCGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (24 bp):
ATTACAGTGGACTGAACCTTGAAG
Found at i:32849527 original size:100 final size:100
Alignment explanation
Indices: 32849365--32850121 Score: 1077
Period size: 100 Copynumber: 7.6 Consensus size: 100
32849355 TCCTTGGCAG
* *
32849365 TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
*
32849430 TGAAGCCGCAACGGTGAATCTTACTTCCATGGCGA
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
*
32849465 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCTCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* * *
32849530 TGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGG
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* * * * *
32849565 TACAGTGGATCAGATTGAAGCTACAACAGTGAATTTTG-TTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* *
32849629 TGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGA
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* * * * *
32849664 TGCAGTAGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCAACATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
*
32849729 TGAAGCCGCAACGGTGAATCTTACTTCCATGGCGA
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* *
32849764 TGCATTGGAGCAGATTAAAGCTACAACGGTGAATTTTGCTTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* * *
32849829 TGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGG
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* * * *
32849864 TACAGTGGATCAGATTGAAGCTACAACGGTGAATTTTG-TTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* *
32849928 TGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGA
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* * *
32849963 TGCAGTGGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* * * *
32850028 TGAAGCCGGAACGGTGAATCTTACTTCCTTGGTGG
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
** * * **** *
32850063 TGCAGCAGAACTGATTAAAGCTACAACAACAAATCTTGCTTCCCCGACATTGCAGTTAA
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAA
32850122 TCAGACTTAA
Statistics
Matches: 581, Mismatches: 74, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
99 173 0.30
100 408 0.70
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (100 bp):
TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
Found at i:32849750 original size:199 final size:200
Alignment explanation
Indices: 32849365--32850121 Score: 1063
Period size: 199 Copynumber: 3.8 Consensus size: 200
32849355 TCCTTGGCAG
* *
32849365 TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* * *
32849430 TGAAGCCGCAACGGTGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGT
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAGTAGATTAAAGCTACAACGGT
* * *
32849495 GAATCTTGCTTCTCCGACATTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTACTTCCCT
131 GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCT
*
32849560 GGCGG
196 GGCGA
* * * * *
32849565 TACAGTGGATCAGATTGAAGCTACAACAGTGAATTTTG-TTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* * *
32849629 TGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGATGCAGTAGAGTAGATTAAAGCTACGACGGT
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAGTAGATTAAAGCTACAACGGT
* * *
32849694 GAATCTTGCTTCCCCAACATTGCAATTTAAAAGATTGAAGCCGCAACGGTGAATCTTACTTCCAT
131 GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCT
32849759 GGCGA
196 GGCGA
* *
32849764 TGCATTGGAGCAGATTAAAGCTACAACGGTGAATTTTGCTTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* * * * * *
32849829 TGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGGTACAGTGGA-TCAGATTGAAGCTACAACGG
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAGT-AGATTAAAGCTACAACGG
* *
32849893 TGAATTTTG-TTCCCCGACATTGCAATTAAAAAGATTGAAGCTGCAACGGTGAATCTTACTTCCC
130 TGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGTGAATCTTACTTCCC
*
32849957 TGGTGA
195 TGGCGA
* * *
32849963 TGCAGTGGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* * * * * * **
32850028 TGAAGCCGGAACGGTGAATCTTACTTCCTTGGTGGTGCAGCAGAACT-GATTAAAGCTACAACAA
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGATGCAGTAG-AGTAGATTAAAGCTACAACGG
** *
32850092 CAAATCTTGCTTCCCCGACATTGCAGTTAA
130 TGAATCTTGCTTCCCCGACATTGCAATTAA
32850122 TCAGACTTAA
Statistics
Matches: 492, Mismatches: 60, Indels: 10
0.88 0.11 0.02
Matches are distributed among these distances:
199 352 0.72
200 139 0.28
201 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (200 bp):
TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAGTAGATTAAAGCTACAACGGT
GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCT
GGCGA
Found at i:32849775 original size:299 final size:299
Alignment explanation
Indices: 32849365--32850121 Score: 1316
Period size: 299 Copynumber: 2.5 Consensus size: 299
32849355 TCCTTGGCAG
* * *
32849365 TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
1 TGCAGTGGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
32849430 TGAAGCCGCAACGGTGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGT
66 TGAAGCCGCAACGGTGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGT
*
32849495 GAATCTTGCTTCTCCGACATTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTACTTCCCT
131 GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTACTTCCCT
32849560 GGCGGTACAGTGGATCAGATTGAAGCTACAACAGTGAATTTTGTTCCCCGACATTGCAATTAAAA
196 GGCGGTACAGTGGATCAGATTGAAGCTACAACAGTGAATTTTGTTCCCCGACATTGCAATTAAAA
32849625 AGATTGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGA
261 AGATTGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGA
* *
32849664 TGCAGTAGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCAACATTGCAATTTAAAAGAT
1 TGCAGTGGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
*
32849729 TGAAGCCGCAACGGTGAATCTTACTTCCATGGCGATGCATTGGAGCAGATTAAAGCTACAACGGT
66 TGAAGCCGCAACGGTGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGT
*
32849794 GAATTTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTACTTCCCT
131 GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTACTTCCCT
*
32849859 GGCGGTACAGTGGATCAGATTGAAGCTACAACGGTGAATTTTGTTCCCCGACATTGCAATTAAAA
196 GGCGGTACAGTGGATCAGATTGAAGCTACAACAGTGAATTTTGTTCCCCGACATTGCAATTAAAA
32849924 AGATTGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGA
261 AGATTGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGA
32849963 TGCAGTGGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
1 TGCAGTGGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
* * * * ** * * ***
32850028 TGAAGCCGGAACGGTGAATCTTACTTCCTTGGTGGTGCAGCAGAACTGATTAAAGCTACAACAAC
66 TGAAGCCGCAACGGTGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGT
* *
32850093 AAATCTTGCTTCCCCGACATTGCAGTTAA
131 GAATCTTGCTTCCCCGACATTGCAATTAA
32850122 TCAGACTTAA
Statistics
Matches: 432, Mismatches: 26, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
299 432 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (299 bp):
TGCAGTGGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
TGAAGCCGCAACGGTGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGT
GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTACTTCCCT
GGCGGTACAGTGGATCAGATTGAAGCTACAACAGTGAATTTTGTTCCCCGACATTGCAATTAAAA
AGATTGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGA
Found at i:32850293 original size:127 final size:128
Alignment explanation
Indices: 32850136--32851092 Score: 1016
Period size: 127 Copynumber: 7.3 Consensus size: 128
32850126 ACTTAAAATA
* * * * *
32850136 ACAGATATTATCTTCCTAAGCAGTAGTGGAGCCGATCGCTTCCAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
* *
32850201 GTGGAGCAGACG-AAAAAAATCAATCCTATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAACC
66 GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* *
32850263 ACAAATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTGAGCAGTA
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
* * *
32850328 GTGGAGCAGATGAAAAAAAAACCAATCCTATCTCCCTGAAGTTGTAGTAGAGTGGATTAAAACC
66 GTGGAGCAGACG-AAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* *
32850392 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCTAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
* *
32850457 GTTGAGCAGACG-AAAAAAACCAACCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
66 GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* *
32850519 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCATATCGCATCCAGTCTTATCTCCTTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
32850584 GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
66 GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* *
32850647 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGCATCCAGTCTTATCTCTCTAAGCA-TC
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGT-
* * * * * ** *** *
32850711 CAGTGTTATCTCCCTAAGCAGTAGTGAAGCAGATGAAA--AAACCAATCCTATCT--CCCTGAAG
65 -AGTG----------GAGCAG-A-CGAA--A-A-AAAACCAATCCTAT-CTCCCTGAAGTTGCAG
* *
32850772 TTGCAATGGAGTGGATTAAAACC
112 -TGGAGT-G----GATTAAAACC
* *
32850795 ACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
* *
32850860 GTGGAGCAGAC-AGAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC
66 GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* * ** * * ** *
32850922 ATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCATATCAAGCCTTATCTCCCTGAAGTTGC
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCT-AAGCAGT
** * * ** * * **
32850987 AGCAGAGCAGGCTG--AAGAAACCAATCCTATCTTTCTGAAGTTGCAGTGAAGCGGATTAAAATG
65 AGTGGAGCAGAC-GAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
** * * * * *
32851050 ATGGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATC
1 ACAGATCTTATCTCCCT-AAGTAGTAGTGGAGCAGATCGCATC
32851093 AGACTTTATG
Statistics
Matches: 705, Mismatches: 88, Indels: 72
0.82 0.10 0.08
Matches are distributed among these distances:
127 250 0.35
128 178 0.25
129 141 0.20
130 3 0.00
131 6 0.01
132 10 0.01
133 4 0.01
134 1 0.00
136 1 0.00
137 5 0.01
139 5 0.01
140 1 0.00
141 3 0.00
142 4 0.01
143 11 0.02
144 6 0.01
145 3 0.00
147 4 0.01
148 68 0.10
149 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (128 bp):
ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
Found at i:32850318 original size:40 final size:40
Alignment explanation
Indices: 32850143--32850706 Score: 211
Period size: 40 Copynumber: 13.3 Consensus size: 40
32850133 ATAACAGATA
* * * **
32850143 TTATCTTCCTAAGCAGTAGTGGAGCCGATCGCTTCCAGTC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
* *
32850183 TTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAAAAAT-CAATC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCG-----AATCCAGTC
* * * ** ** * *
32850226 CTATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAACCACAAATC
1 TTATCTCCCT-AAGTAGTAGTGGAGCAGA-TCGAATC-C-AGTC
*
32850270 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
* * * *
32850310 TTATCTCCCTGAGCAGTAGTGGAGCAGAT-GAAAAAAAAACCAATC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCG------AATCCAGTC
* * * ** ** *
32850355 CTATCTCCCTGAAGTTGTAGTAGAGTGGATTAAAACCACAGATC
1 TTATCTCCCT-AAGTAGTAGTGGAGCAGA-TCGAATC-CAG-TC
* * *
32850399 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCTAGTC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
* * * **
32850439 TTATCTCCCTAAGCAGTAGTTGAGCAGA-CGAAAAAAACCAACC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCG----AATCCAGTC
* * * ** ** *
32850482 CTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATC
1 TTATCTCCCT-AAGTAGTAGTGGAGCAGA-TCGAATC-CAG-TC
* *
32850526 TTATCTCCCTAAGTAGTAGTGGAGCATATCGCATCCAGTC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
* * * *
32850566 TTATCTCCTTAAGCAGTAGTGGAGCAGA-CGAAAAAAAACCAATC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCG-----AATCCAGTC
* * * ** ** *
32850610 CTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATC
1 TTATCTCCCT-AAGTAGTAGTGGAGCAGA-TCGAATC-CAG-TC
* *
32850654 TTATCTCCCTAAGTAGTAGTGGAGTAGATCGCATCCAGTC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
*
32850694 TTATCTCTCTAAG
1 TTATCTCCCTAAG
32850707 CATCCAGTGT
Statistics
Matches: 379, Mismatches: 104, Indels: 82
0.67 0.18 0.15
Matches are distributed among these distances:
39 7 0.02
40 126 0.33
41 11 0.03
42 21 0.06
43 88 0.23
44 85 0.22
45 28 0.07
46 12 0.03
47 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (40 bp):
TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
Found at i:32850712 original size:22 final size:22
Alignment explanation
Indices: 32850684--32850730 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
32850674 GGAGTAGATC
*
32850684 GCATCCAGTCTTATCTCTCTAA
1 GCATCCAGTCTTATCTCCCTAA
*
32850706 GCATCCAGTGTTATCTCCCTAA
1 GCATCCAGTCTTATCTCCCTAA
32850728 GCA
1 GCA
32850731 GTAGTGAAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.32
Consensus pattern (22 bp):
GCATCCAGTCTTATCTCCCTAA
Found at i:32850831 original size:148 final size:149
Alignment explanation
Indices: 32850556--32850856 Score: 505
Period size: 148 Copynumber: 2.0 Consensus size: 149
32850546 GGAGCATATC
* *
32850556 GCATCCAGTCTTATCTCCTTAAGCAGTAGTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTG
1 GCATCCAGTCTTATCTCCCTAAGCAGTAGTGAAGCAGACG-AAAAAAACCAATCCTATCTCCCTG
* * * *
32850621 AAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGC
65 AAGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGC
*
32850686 ATCCAGTCTTATCTCTCTAA
130 ATCCAGTCTTATCTCCCTAA
* *
32850706 GCATCCAGTGTTATCTCCCTAAGCAGTAGTGAAGCAGATG-AAAAAACCAATCCTATCTCCCTGA
1 GCATCCAGTCTTATCTCCCTAAGCAGTAGTGAAGCAGACGAAAAAAACCAATCCTATCTCCCTGA
32850770 AGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCA
66 AGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCA
32850835 TCCAGTCTTATCTCCCTAA
131 TCCAGTCTTATCTCCCTAA
32850854 GCA
1 GCA
32850857 GTAGTGGAGC
Statistics
Matches: 142, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
148 106 0.75
150 36 0.25
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (149 bp):
GCATCCAGTCTTATCTCCCTAAGCAGTAGTGAAGCAGACGAAAAAAACCAATCCTATCTCCCTGA
AGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCA
TCCAGTCTTATCTCCCTAA
Found at i:32850934 original size:44 final size:43
Alignment explanation
Indices: 32850759--32851082 Score: 141
Period size: 44 Copynumber: 7.6 Consensus size: 43
32850749 AAACCAATCC
* *
32850759 TATCTCCCTGAAGTTGCAATGGAGTGGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA-AGATCT
** * * * *** *
32850803 TATCTCCCT-AAGCAGTAGTGAAGCAGATCGCATCC-AG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAAGATCT
** * * *
32850843 TATCTCCCT-AAGCAGTAGTGGAGCAGACAGA-AAAAACC-A-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGC-G---GATTAAAACCAAGATCT
32850886 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA-AGATCT
** * * * * * *
32850930 TATCTCCCT-AAGCAGTAGTGGAGCAGA-TCATATCAAG-CCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAAGATCT
** * * *
32850970 TATCTCCCTGAAGTTGCAGCAGAGCAGGCTGAAGAAACC-A-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGC-GGAT-TA-AAACCAAGATCT
** * ** *
32851014 TATCTTTCTGAAGTTGCAGTGAAGCGGATTAAAATGATGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA-AGATCT
* *
32851058 TATCTCTCTGAAGTTGCAGTAGAGC
1 TATCTCCCTGAAGTTGCAGTGGAGC
32851083 AGATCACATC
Statistics
Matches: 203, Mismatches: 58, Indels: 38
0.68 0.19 0.13
Matches are distributed among these distances:
40 39 0.19
41 23 0.11
42 7 0.03
43 49 0.24
44 82 0.40
45 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAAGATCT
Found at i:32850972 original size:40 final size:40
Alignment explanation
Indices: 32850801--32850978 Score: 126
Period size: 40 Copynumber: 4.3 Consensus size: 40
32850791 AACCACAGAT
* ** * *
32850801 CTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCATCCAGT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGC
* *
32850841 CTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAA-AAAAC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCA-AATCAAGC
** * * * * *
32850880 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGAT
1 C--T--TATCTCCCT-AAGCAGTAGTGGAGCAGA-TCAAATCA-AG-C
*
32850928 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCATATCAAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGC
32850968 CTTATCTCCCT
1 CTTATCTCCCT
32850979 GAAGTTGCAG
Statistics
Matches: 104, Mismatches: 23, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
39 3 0.03
40 40 0.38
41 3 0.03
42 5 0.05
43 23 0.22
44 23 0.22
45 2 0.02
46 3 0.03
47 1 0.01
48 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (40 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGC
Found at i:32852736 original size:18 final size:20
Alignment explanation
Indices: 32852713--32852755 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
32852703 CATATACATG
32852713 CATACATTTT-A-TAATACA
1 CATACATTTTAATTAATACA
32852731 CATACATTTTAATTAATACA
1 CATACATTTTAATTAATACA
32852751 CATAC
1 CATAC
32852756 TTATACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.43
19 1 0.04
20 12 0.52
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (20 bp):
CATACATTTTAATTAATACA
Found at i:32854375 original size:17 final size:17
Alignment explanation
Indices: 32854353--32854390 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
32854343 TGAATAGTTA
32854353 AAATAATTTTTTTCGTG
1 AAATAATTTTTTTCGTG
32854370 AAATAATTTTTTTCGTG
1 AAATAATTTTTTTCGTG
32854387 AAAT
1 AAAT
32854391 TAAATGCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (17 bp):
AAATAATTTTTTTCGTG
Found at i:32854590 original size:110 final size:110
Alignment explanation
Indices: 32854396--32854645 Score: 446
Period size: 110 Copynumber: 2.3 Consensus size: 110
32854386 GAAATTAAAT
32854396 GCAAAACATTGCCTTATTTCGAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAACGAGAAAA
1 GCAAAACATTGCCTTATTT-GAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAACGAGAAAA
* *
32854461 ATCGACACCCAGCACCTTAGGGCACGTTCTCTCGAATTTCCCAAAC
65 ATCGACACACAACACCTTAGGGCACGTTCTCTCGAATTTCCCAAAC
* *
32854507 GCAAAATATTGCCTTATTTGAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAATGAGAAAAA
1 GCAAAACATTGCCTTATTTGAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAACGAGAAAAA
*
32854572 TCGACACACAACACCTTAGGGCACGTTTTCTCGAATTTCCCAAAC
66 TCGACACACAACACCTTAGGGCACGTTCTCTCGAATTTCCCAAAC
32854617 GCAAAACATTGCCTTATTTGAAAATTTTT
1 GCAAAACATTGCCTTATTTGAAAATTTTT
32854646 GTTTTTGATA
Statistics
Matches: 133, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
110 115 0.86
111 18 0.14
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (110 bp):
GCAAAACATTGCCTTATTTGAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAACGAGAAAAA
TCGACACACAACACCTTAGGGCACGTTCTCTCGAATTTCCCAAAC
Found at i:32854784 original size:18 final size:17
Alignment explanation
Indices: 32854753--32854788 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
32854743 ATATATAATG
*
32854753 AAAAGAAATCAACAAAT
1 AAAAGAAATAAACAAAT
32854770 AAAAGTAAATAAACAAAT
1 AAAAG-AAATAAACAAAT
32854788 A
1 A
32854789 TAAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.72, C:0.08, G:0.06, T:0.14
Consensus pattern (17 bp):
AAAAGAAATAAACAAAT
Found at i:32855145 original size:25 final size:25
Alignment explanation
Indices: 32855088--32855145 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
32855078 GTAAGTGTAC
* *
32855088 ATATATAT-TACAAAAAGTATGTGT
1 ATATATATATACAAAAAATATATGT
*
32855112 GTA-AGTATATACAAAAAATATATGT
1 ATATA-TATATACAAAAAATATATGT
32855137 ATATATATA
1 ATATATATA
32855146 AAAAAACGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
23 1 0.04
24 5 0.19
25 20 0.74
26 1 0.04
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.36
Consensus pattern (25 bp):
ATATATATATACAAAAAATATATGT
Found at i:32855161 original size:22 final size:23
Alignment explanation
Indices: 32855117--32855163 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
32855107 TGTGTGTAAG
* *
32855117 TATATACAAAAAATATATGTATA
1 TATATACAAAAAACATATATATA
*
32855140 TATATA-AAAAAACGTATATATA
1 TATATACAAAAAACATATATATA
32855162 TA
1 TA
32855164 AGGGCAATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (23 bp):
TATATACAAAAAACATATATATA
Found at i:32857375 original size:20 final size:20
Alignment explanation
Indices: 32857350--32857396 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
32857340 AAAAAAAAAA
*
32857350 TCAAAATAATTT-TCAAAATT
1 TCAAAAT-ATTTATAAAAATT
*
32857370 TTAAAATATTTATAAAAATT
1 TCAAAATATTTATAAAAATT
32857390 TCAAAAT
1 TCAAAAT
32857397 TTATATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.40
Consensus pattern (20 bp):
TCAAAATATTTATAAAAATT
Found at i:32857437 original size:35 final size:35
Alignment explanation
Indices: 32857368--32857437 Score: 81
Period size: 35 Copynumber: 2.0 Consensus size: 35
32857358 ATTTTCAAAA
* **
32857368 TTTTAAAATATTTATAAAAATTTCAAAATTTATAT
1 TTTTAAAATAATTATAAAAATTTCAAAAAATATAT
32857403 TTTTAAAA-AATTAT-AAAATATTCAAAAAAATATAT
1 TTTTAAAATAATTATAAAAAT-TTC-AAAAAATATAT
32857438 AAAGAAAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
33 5 0.17
34 8 0.27
35 17 0.57
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (35 bp):
TTTTAAAATAATTATAAAAATTTCAAAAAATATAT
Found at i:32861438 original size:2 final size:2
Alignment explanation
Indices: 32861427--32861475 Score: 73
Period size: 2 Copynumber: 24.0 Consensus size: 2
32861417 TTTTCAAGTT
32861427 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CTA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
32861469 GTA TA TA
1 -TA TA TA
32861476 NNNNNNNNNN
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
1 1 0.02
2 39 0.89
3 4 0.09
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
TA
Found at i:32861599 original size:2 final size:2
Alignment explanation
Indices: 32861588--32861635 Score: 64
Period size: 2 Copynumber: 24.5 Consensus size: 2
32861578 TTTCTAAGGT
*
32861588 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TC TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32861628 TA TGA TA T
1 TA T-A TA T
32861636 GAAAAGAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.90
3 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:32863015 original size:21 final size:21
Alignment explanation
Indices: 32862973--32863015 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
32862963 TTTTAAAAAA
* * * *
32862973 TAAATTTTATTTTATGACTTT
1 TAAATATTATTTGATAAATTT
32862994 TAAATATTATTTGATAAATTT
1 TAAATATTATTTGATAAATTT
32863015 T
1 T
32863016 TAATGTCCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (21 bp):
TAAATATTATTTGATAAATTT
Found at i:32865309 original size:19 final size:19
Alignment explanation
Indices: 32865285--32865323 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32865275 TCTGCATTGT
*
32865285 TGAATA-ATAAGTTTTTAAA
1 TGAATAGATAA-TTTATAAA
32865304 TGAATAGATAATTTATAAA
1 TGAATAGATAATTTATAAA
32865323 T
1 T
32865324 CAACCGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (19 bp):
TGAATAGATAATTTATAAA
Found at i:32868117 original size:4 final size:4
Alignment explanation
Indices: 32868108--32868143 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
32868098 TAGAGAATTT
32868108 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
32868144 TATATATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:32870052 original size:2 final size:2
Alignment explanation
Indices: 32870045--32870071 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32870035 ACTCCACTGG
32870045 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
32870072 GCCAAATCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32873605 original size:3 final size:3
Alignment explanation
Indices: 32873599--32873623 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
32873589 GGAAAAAAAT
32873599 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
32873624 CGGAGGTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:32884797 original size:88 final size:88
Alignment explanation
Indices: 32884644--32884810 Score: 217
Period size: 88 Copynumber: 1.9 Consensus size: 88
32884634 CACAGAAGGG
* ** * * * * *
32884644 GGACCGCATGCTTTGCAGGTAACCCAGAGTGAAATATGTGTCTAGTAGGCTTAAAGCCCGTACGG
1 GGACCGCATGCTCTGCAGACAACCCAGAGTGAAACACGTGTCTAGCAGGCCTAAAGCCCGCACGG
32884709 AATGTCAATACTAGGAATAGAAA
66 AATGTCAATACTAGGAATAGAAA
* * * *
32884732 GGACCGCGTGCTCTGCAGACAACCCAGAGTGAAACACGTGTCTAGCATGCCTGAAGTCCGCACGG
1 GGACCGCATGCTCTGCAGACAACCCAGAGTGAAACACGTGTCTAGCAGGCCTAAAGCCCGCACGG
*
32884797 AATGTCAATGCTAG
66 AATGTCAATACTAG
32884811 AAACGGCGGA
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
88 66 1.00
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (88 bp):
GGACCGCATGCTCTGCAGACAACCCAGAGTGAAACACGTGTCTAGCAGGCCTAAAGCCCGCACGG
AATGTCAATACTAGGAATAGAAA
Found at i:32885427 original size:8 final size:8
Alignment explanation
Indices: 32885414--32885445 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
32885404 TAAAATTTAA
32885414 AATTTATT
1 AATTTATT
32885422 AATTTATT
1 AATTTATT
32885430 AATTTATT
1 AATTTATT
32885438 AATTTATT
1 AATTTATT
32885446 TTTTTTTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
AATTTATT
Found at i:32886144 original size:15 final size:15
Alignment explanation
Indices: 32886116--32886157 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
32886106 TTGAAAATTC
*
32886116 AATATACAAATTTTG
1 AATATACAATTTTTG
*
32886131 AATATTCAATTTTTG
1 AATATACAATTTTTG
32886146 AA-ATACAATTTT
1 AATATACAATTTT
32886158 ACAATAGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (15 bp):
AATATACAATTTTTG
Found at i:32891038 original size:24 final size:24
Alignment explanation
Indices: 32891011--32891056 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
32891001 GCAGTAAACA
*
32891011 AAAATCAAAG-AAGAAGGAAAAAAG
1 AAAATAAAAGAAAGAA-GAAAAAAG
32891035 AAAATAAAAGAAAGAAGAAAAA
1 AAAATAAAAGAAAGAAGAAAAA
32891057 TGGAGAAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.04
Consensus pattern (24 bp):
AAAATAAAAGAAAGAAGAAAAAAG
Found at i:32894529 original size:9 final size:9
Alignment explanation
Indices: 32894515--32894545 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32894505 GTTAAACGAA
32894515 TCGAGTTAT
1 TCGAGTTAT
*
32894524 TCGAGTTAA
1 TCGAGTTAT
32894533 TCGAGTTAT
1 TCGAGTTAT
32894542 TCGA
1 TCGA
32894546 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:32894615 original size:9 final size:9
Alignment explanation
Indices: 32894598--32894634 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
32894588 TGAATTTTCA
32894598 AATTCGAAT
1 AATTCGAAT
*
32894607 AACTCGAAT
1 AATTCGAAT
32894616 AATTCGAAT
1 AATTCGAAT
32894625 AATTCGAAT
1 AATTCGAAT
32894634 A
1 A
32894635 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:32894877 original size:30 final size:31
Alignment explanation
Indices: 32894843--32894902 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
32894833 AAACCTTTTA
*
32894843 TTTTCTCCC-AAAATTTTTACTCCC-TCCCAC
1 TTTTC-CCCTAAAACTTTTACTCCCTTCCCAC
*
32894873 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCTAAAACTTTTACTCCCTTCCCA
32894903 TCTCACCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.12
30 18 0.69
31 5 0.19
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCTAAAACTTTTACTCCCTTCCCAC
Found at i:32908650 original size:19 final size:21
Alignment explanation
Indices: 32908628--32908672 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
32908618 AGAAGAGAAT
32908628 GAAAATT-AAAGAA-AAAAAA
1 GAAAATTAAAAGAACAAAAAA
*
32908647 GAAAATTAAAAGAACATAAAA
1 GAAAATTAAAAGAACAAAAAA
32908668 GAAAA
1 GAAAA
32908673 AAATGCTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.30
20 6 0.26
21 10 0.43
ACGTcount: A:0.76, C:0.02, G:0.11, T:0.11
Consensus pattern (21 bp):
GAAAATTAAAAGAACAAAAAA
Found at i:32908668 original size:10 final size:11
Alignment explanation
Indices: 32908628--32908672 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 11
32908618 AGAAGAGAAT
32908628 GAAAATT-AAA
1 GAAAATTAAAA
32908638 GAAAA--AAAA
1 GAAAATTAAAA
32908647 GAAAATTAAAA
1 GAAAATTAAAA
*
32908658 GAACA-TAAAA
1 GAAAATTAAAA
32908668 GAAAA
1 GAAAA
32908673 AAATGCTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
9 8 0.27
10 14 0.47
11 8 0.27
ACGTcount: A:0.76, C:0.02, G:0.11, T:0.11
Consensus pattern (11 bp):
GAAAATTAAAA
Done.