Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 112 of 168
Found at i:32909684 original size:14 final size:14
Alignment explanation
Indices: 32909665--32909704 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
32909655 TTGATTGCCA
32909665 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
32909679 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
32909693 GGAAAATGTTTT
1 GTAAAATGTTTT
32909705 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:32909713 original size:20 final size:20
Alignment explanation
Indices: 32909688--32909727 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32909678 CGTAAAATGA
*
32909688 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
32909708 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
32909728 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:32909717 original size:34 final size:35
Alignment explanation
Indices: 32909673--32909739 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
32909663 CAGTAAAATG
*
32909673 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
32909707 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
32909740 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:32909743 original size:14 final size:15
Alignment explanation
Indices: 32909667--32909743 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
32909657 GATTGCCAGT
* *
32909667 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
32909681 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
32909695 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
32909715 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
32909730 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
32909744 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:32909917 original size:22 final size:24
Alignment explanation
Indices: 32909892--32909943 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 24
32909882 ATAATTTATT
32909892 TATAAATAA-A-TCAA-ATT-AAA
1 TATAAATAATACTCAATATTAAAA
32909912 TATATAATAATACTCAATTATTAAAA
1 TATA-AATAATACTCAA-TATTAAAA
32909938 TATAAA
1 TATAAA
32909944 AGCATTGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 4 0.15
21 5 0.19
22 1 0.04
23 4 0.15
25 5 0.19
26 7 0.27
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.35
Consensus pattern (24 bp):
TATAAATAATACTCAATATTAAAA
Found at i:32913899 original size:16 final size:17
Alignment explanation
Indices: 32913870--32913916 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
32913860 TGTATGTATA
*
32913870 TATGTAAAT-GATAAAG
1 TATGTAAATATATAAAG
32913886 TATG-AAATATAT-AAG
1 TATGTAAATATATAAAG
*
32913901 TATGTACATATATAAA
1 TATGTAAATATATAAA
32913917 TATACACTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 11 0.42
16 13 0.50
17 2 0.08
ACGTcount: A:0.51, C:0.02, G:0.13, T:0.34
Consensus pattern (17 bp):
TATGTAAATATATAAAG
Found at i:32914217 original size:17 final size:18
Alignment explanation
Indices: 32914197--32914233 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
32914187 TGTAAGTGTG
32914197 AAGTATATATATC-ATAT
1 AAGTATATATATCTATAT
*
32914214 AAGTATTTATATCTATAT
1 AAGTATATATATCTATAT
32914232 AA
1 AA
32914234 ATTAAAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.43
Consensus pattern (18 bp):
AAGTATATATATCTATAT
Found at i:32914336 original size:3 final size:3
Alignment explanation
Indices: 32914328--32914374 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
32914318 TAAATGAGTA
32914328 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32914375 GATAGTTGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:32925819 original size:14 final size:14
Alignment explanation
Indices: 32925797--32925826 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32925787 TAATAGGATC
*
32925797 ATTATTAAAAATAA
1 ATTAATAAAAATAA
32925811 ATTAATAAAAATAA
1 ATTAATAAAAATAA
32925825 AT
1 AT
32925827 AATTTAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATTAATAAAAATAA
Found at i:32925878 original size:23 final size:23
Alignment explanation
Indices: 32925834--32925914 Score: 60
Period size: 23 Copynumber: 3.5 Consensus size: 23
32925824 AATAATTTAA
* *
32925834 TAATATTTTT-AATATAATTATTT
1 TAATATTTTTAAATTTTA-TATTT
32925857 TAATATTTTTAAATTTTATA-TT
1 TAATATTTTTAAATTTTATATTT
* * *
32925879 AAATTATATTAAAATATTT-TATTT
1 TAA-TATTTTTAAAT-TTTATATTT
*
32925903 TTATATTTTTAA
1 TAATATTTTTAA
32925915 GTTTAAGTTT
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
22 4 0.09
23 30 0.67
24 11 0.24
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TAATATTTTTAAATTTTATATTT
Found at i:32925884 original size:31 final size:31
Alignment explanation
Indices: 32925849--32925909 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
32925839 TTTTTAATAT
* *
32925849 AATTATTTTAATAT-TTTTAAATTTTATATTA
1 AATTATATTAAAATATTTT-AATTTTATATTA
*
32925880 AATTATATTAAAATATTTTATTTTTATATT
1 AATTATATTAAAATATTTTAATTTTATATT
32925910 TTTAAGTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 22 0.85
32 4 0.15
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (31 bp):
AATTATATTAAAATATTTTAATTTTATATTA
Found at i:32931890 original size:47 final size:49
Alignment explanation
Indices: 32931771--32931893 Score: 128
Period size: 47 Copynumber: 2.6 Consensus size: 49
32931761 TTCATCTTGT
* * *
32931771 ACATTGAACCTACCCTTATCCAATT-CTTATCTTAAAGGCCTAATGTAA
1 ACATTAAACCTACCCTTATCCAATTCCTCATCTTAAAGGCCTAAAGTAA
** * *
32931819 ACATTAAACCTACTTTTA-CGCAATTCCTCCT-TTGAAGG-CTAAAGTAA
1 ACATTAAACCTACCCTTATC-CAATTCCTCATCTTAAAGGCCTAAAGTAA
* *
32931866 ATATTAAACCTACCGTTATCCAATTCCT
1 ACATTAAACCTACCCTTATCCAATTCCT
32931894 TTGTTCCCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
47 32 0.52
48 27 0.44
49 3 0.05
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.33
Consensus pattern (49 bp):
ACATTAAACCTACCCTTATCCAATTCCTCATCTTAAAGGCCTAAAGTAA
Found at i:32933771 original size:3 final size:3
Alignment explanation
Indices: 32933763--32933799 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
32933753 ATTATTTAGT
*
32933763 TTA TTA TTA TTA TTA TTA TTA TTA TTAA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
32933800 GTTTTATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.94
4 2 0.06
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:32934643 original size:108 final size:108
Alignment explanation
Indices: 32934451--32934657 Score: 290
Period size: 108 Copynumber: 1.9 Consensus size: 108
32934441 AAATTTTTCT
* * * *
32934451 AAATAAGGCAATATTTTGCATTTGGAAGTTCGAGAAAGCGTGTCCTAATGTGCTGGGTTTCGATT
1 AAATAAGACAATATTTTGCACTTGGAAATTCGAGAAAGCGTGCCCTAATGTGCTGGGTTTCGATT
* * * *
32934516 TTCTCGTTCGACCAGATAGCCGAATATCCTTTTAAAAATTCCA
66 TTCTCGTTAGAACAAATAGCCAAATATCCTTTTAAAAATTCCA
* *
32934559 AAATAAGACAATGTTTTGCGCTTGGAAATTCGAGGAAA-CGTGCCCTAATGTGCTGGGTTTCGAT
1 AAATAAGACAATATTTTGCACTTGGAAATTCGA-GAAAGCGTGCCCTAATGTGCTGGGTTTCGAT
* *
32934623 TTTTTTGTTAGAACAAATAGCCAAATATCCTTTTA
65 TTTCTCGTTAGAACAAATAGCCAAATATCCTTTTA
32934658 TATCTTAATC
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
108 82 0.95
109 4 0.05
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (108 bp):
AAATAAGACAATATTTTGCACTTGGAAATTCGAGAAAGCGTGCCCTAATGTGCTGGGTTTCGATT
TTCTCGTTAGAACAAATAGCCAAATATCCTTTTAAAAATTCCA
Found at i:32938399 original size:8 final size:8
Alignment explanation
Indices: 32938386--32938442 Score: 80
Period size: 8 Copynumber: 6.9 Consensus size: 8
32938376 AAAATTGTTA
32938386 AAAAAAAG
1 AAAAAAAG
32938394 AAAAAAAG
1 AAAAAAAG
32938402 -AAAAAAG
1 AAAAAAAG
32938409 AAGGAAAAAG
1 AA--AAAAAG
32938419 AAAAAAAG
1 AAAAAAAG
32938427 AAGAAAAAG
1 AA-AAAAAG
32938436 AAAAAAA
1 AAAAAAA
32938443 ATGAGAGGCC
Statistics
Matches: 45, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.16
8 22 0.49
9 8 0.18
10 8 0.18
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:32938407 original size:17 final size:17
Alignment explanation
Indices: 32938385--32938443 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
32938375 AAAAATTGTT
32938385 AAAAAAAAGAAAAAAAG
1 AAAAAAAAGAAAAAAAG
*
32938402 AAAAAAGAAG-GAAAAAG
1 AAAAAA-AAGAAAAAAAG
32938419 -AAAAAAAGAAGAAAAAG
1 AAAAAAAAGAA-AAAAAG
32938436 AAAAAAAA
1 AAAAAAAA
32938444 TGAGAGGCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
15 3 0.08
16 5 0.14
17 18 0.50
18 10 0.28
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAAAG
Found at i:32938422 original size:25 final size:24
Alignment explanation
Indices: 32938387--32938441 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 24
32938377 AAATTGTTAA
32938387 AAAAAAGAAAAAAAGAAAAAAGAAG
1 AAAAAAGAAAAAAAGAAAAAA-AAG
* *
32938412 GAAAAAGAAAAAAAGAAGAAAAAG
1 AAAAAAGAAAAAAAGAAAAAAAAG
32938436 AAAAAA
1 AAAAAA
32938442 AATGAGAGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (24 bp):
AAAAAAGAAAAAAAGAAAAAAAAG
Found at i:32938442 original size:25 final size:26
Alignment explanation
Indices: 32938385--32938442 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
32938375 AAAAATTGTT
32938385 AAAAAAA-AGAAAAA-AAGAAAAAAG
1 AAAAAAAGAGAAAAAGAAGAAAAAAG
*
32938409 AAGGAAAAAGAAAAAAAGAAG-AAAAAG
1 AA--AAAAAGAGAAAAAGAAGAAAAAAG
32938436 AAAAAAA
1 AAAAAAA
32938443 ATGAGAGGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
24 2 0.07
25 5 0.17
26 5 0.17
27 14 0.48
28 3 0.10
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (26 bp):
AAAAAAAGAGAAAAAGAAGAAAAAAG
Found at i:32939852 original size:89 final size:89
Alignment explanation
Indices: 32939688--32940841 Score: 1522
Period size: 89 Copynumber: 13.0 Consensus size: 89
32939678 GATAACAGAT
* *
32939688 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTTCTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
*
32939753 GGGAAGCAGATCGAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * *
32939777 CTTCCCTTCCTGTACTGACAGCGGAGCAGACTGAAAATAGTAGATCTTGCATTCCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
* *
32939842 GTGAAACAGATCGAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
** * * * *
32939866 CTTGCCTTCCTGTACTGACAGTAGAGTAGACTGAAAATAACAGATCTTGCATTCCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
* * *
32939931 GTGAAGCCA-ATCGAAGACACTAGT
66 GCGAAG-CAGATCGAAGACACCAGC
* *
32939955 CTTACCTTCCTGTACTGACAACGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
*
32940020 GCGAAGTAGATCGAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * * *
32940044 CTTACCTTCCTGTACTGATAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTATATTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
32940109 GCGAAGCCA-ATCGAAGACACCAGC
66 GCGAAG-CAGATCGAAGACACCAGC
* * * * *
32940133 CTTACCTTCCTGTACTGACAGCGAAGTAGACTAAAGATAGCAGATCTTACCTTCCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
*
32940198 GCGAAGTAGATCGAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * * *
32940222 ATTGCCTTCCTATACTGACAGCGGAGCAGACTGAAGATAACAAATCTTACCTTCCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
* * *
32940287 GCGAAGCAGCTCAAAGGCACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * **
32940311 CTTGCCTTCCTGTACTGACAGCGAAGCAGACTAAAGATAACAGATCTTGCCTTCCTAAACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
** * *
32940376 GTAAAGCAGATTGAAAACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * *
32940400 CTTGCCTTCCTGTACTGACAGCGGAACAGACTGAAGATAACAGATCTTGCCTTCCTGTACTGACA
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
** * *
32940465 ATGAAGCAGATCGAATACACCAAC
66 GCGAAGCAGATCGAAGACACCAGC
* * * *
32940489 CTTGCCTTCTTGTACTGACAGTGGAGCAGACTGAAGATAGCAGATATTGCCTTCCTATACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
* * *
32940554 GCGAAGCAGATTGAGGACATCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * *
32940578 CTTGCCTTCCTGTACTGATAGTGGAGCAGACTGAAGATAGCAGATCTTGCCTTTCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
* *
32940643 GCGAAACAGATCGAAGACACTAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * * * ** *
32940667 CTTGCCTTCCTGTACTGATAGTGGAGCAGACTAAATATAGCAGATATT-TTTTCCTATACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
*
32940731 GCGAAGCAGATCAAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * * * *
32940755 CTTGCCTTCCTGTACTGACAGCGGAGTAGACTAAATATAGCAGATCTTACCATCCTGTACTGACA
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
32940820 GCGAAGCAGATCGAAGACACCA
66 GCGAAGCAGATCGAAGACACCA
32940842 TAGTTTACAG
Statistics
Matches: 934, Mismatches: 126, Indels: 10
0.87 0.12 0.01
Matches are distributed among these distances:
88 79 0.08
89 852 0.91
90 3 0.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.23
Consensus pattern (89 bp):
CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
GCGAAGCAGATCGAAGACACCAGC
Found at i:32941614 original size:132 final size:132
Alignment explanation
Indices: 32940880--32941598 Score: 1087
Period size: 132 Copynumber: 5.4 Consensus size: 132
32940870 GCAAATCTTA
* * *
32940880 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAAGATAGTGGAGAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
* *
32940945 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGGTTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
32941010 TG
131 TG
* * *
32941012 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCTTCCCAAGATAGTGGAGAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
* * * ** *
32941077 GTAGATTTAAGTCATTTGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTATAGATTT
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
32941142 TG
131 TG
* * *
32941144 TCCCCCTAAGCAGTAGTGGAGCAGATCAAAAACGGTGAATCTTATCTTCCCAAAATAGTGGAGAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
** * * *
32941209 GCAGATTTAAGCCACCAGTTCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
32941274 TG
131 TG
*
32941276 TCCCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
*
32941341 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
32941406 TG
131 TG
* ** * * * *
32941408 TCACCCTAAGCAGTAGTGGAGCAGATTGAAAATAGTGAATCTTATCTTCTCGAGATAGTAGAGAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
* * *
32941473 TCAGATTTAAGCCATTAGTGCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGACTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
32941538 TG
131 TG
* * * * *
32941540 TCTCCCTAAGCAGTAGTGGAACGGATCAAATATGGTGAATCTTATCTTCTCAAGGTAGT
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGT
32941599 AGGGAAGTAA
Statistics
Matches: 534, Mismatches: 53, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 534 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (132 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
TG
Found at i:32941906 original size:14 final size:15
Alignment explanation
Indices: 32941879--32941912 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
32941869 CCCAACTAGC
32941879 CCAAATACAACCAAA
1 CCAAATACAACCAAA
32941894 CCAAATA-AACCAAA
1 CCAAATACAACCAAA
32941908 CCAAA
1 CCAAA
32941913 ATTAATTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.62, C:0.32, G:0.00, T:0.06
Consensus pattern (15 bp):
CCAAATACAACCAAA
Found at i:32943100 original size:3 final size:3
Alignment explanation
Indices: 32943092--32943131 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
32943082 ATTATTTAGT
*
32943092 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTAA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
32943132 GTTTTATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 32 0.94
4 2 0.06
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:32943974 original size:108 final size:108
Alignment explanation
Indices: 32943777--32943988 Score: 322
Period size: 108 Copynumber: 2.0 Consensus size: 108
32943767 AAAGAAAATT
* *
32943777 TTTCTAAATAAGGTAATATTTTGCATTTGAAAGTTCGAGAAAGCGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGTAATATTTTGCATTGGAAAGTTCGAGAAAGCGTGCCCTAATGTGCTGGGTTT
* * *
32943842 CGATTTTCTCGTTCGACCAGATAGCCGAATATCCTTTTAAAAA
66 CGATTTTCTCGTTAGACCAAATAGCCAAATATCCTTTTAAAAA
*
32943885 TTTCAAAATAAGGTAATGTTTTTCGC-TTGGAAA-TTCGAGGAAA-CGTGCCCTAATGTGCTGGG
1 TTTCAAAATAAGGTAAT-ATTTT-GCATTGGAAAGTTCGA-GAAAGCGTGCCCTAATGTGCTGGG
32943947 TTTCGATTTTCTCGTTAGACCAAATAGCCAAATATCCTTTTA
63 TTTCGATTTTCTCGTTAGACCAAATAGCCAAATATCCTTTTA
32943989 TATCTTAACC
Statistics
Matches: 95, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
108 79 0.83
109 14 0.15
110 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (108 bp):
TTTCAAAATAAGGTAATATTTTGCATTGGAAAGTTCGAGAAAGCGTGCCCTAATGTGCTGGGTTT
CGATTTTCTCGTTAGACCAAATAGCCAAATATCCTTTTAAAAA
Found at i:32945742 original size:31 final size:30
Alignment explanation
Indices: 32945686--32945761 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 30
32945676 ATTAGGGATC
* *
32945686 TAGTCCTTATAC-TTTAATTTGATCAATTT
1 TAGTCTTTATACTTTTAAATTGATCAATTT
*
32945715 TAGTTTTTATACTTTTCAAATTGATCAATTT
1 TAGTCTTTATACTTTT-AAATTGATCAATTT
*
32945746 TAGTCTTTGTACTTTT
1 TAGTCTTTATACTTTT
32945762 TGAATTTTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 10 0.25
30 3 0.08
31 27 0.68
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.55
Consensus pattern (30 bp):
TAGTCTTTATACTTTTAAATTGATCAATTT
Found at i:32949692 original size:28 final size:29
Alignment explanation
Indices: 32949643--32949702 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
32949633 ACCACGCATT
*
32949643 TTTCCAATAAATTTTTAATTTT-ATTGAAA
1 TTTCCAATAAATTTCTAATTTTAATT-AAA
* *
32949672 TTTCCACT-AATTTCTATTTTTAATTAAA
1 TTTCCAATAAATTTCTAATTTTAATTAAA
32949700 TTT
1 TTT
32949703 AACTATGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 17 0.63
29 10 0.37
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (29 bp):
TTTCCAATAAATTTCTAATTTTAATTAAA
Found at i:32953094 original size:24 final size:25
Alignment explanation
Indices: 32953062--32953110 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
32953052 TGTATAATTT
32953062 ATTTAATTTAAT-TATCATAT-TATA
1 ATTTAATTTAATATAT-ATATATATA
*
32953086 ATTTGATTTAATATATATATATATA
1 ATTTAATTTAATATATATATATATA
32953111 TATATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (25 bp):
ATTTAATTTAATATATATATATATA
Found at i:32953103 original size:2 final size:2
Alignment explanation
Indices: 32953096--32953123 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32953086 ATTTGATTTA
32953096 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32953124 GTAATTGATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32956969 original size:16 final size:18
Alignment explanation
Indices: 32956930--32956963 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32956920 TAAGTTTATA
32956930 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
32956947 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
32956964 AATTTAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:32957938 original size:17 final size:18
Alignment explanation
Indices: 32957905--32957940 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32957895 TTTCATCTAC
*
32957905 TTTTAAAAATATTTTTAT
1 TTTTAAAAATATATTTAT
32957923 TTTTAAAAATA-ATTTAT
1 TTTTAAAAATATATTTAT
32957940 T
1 T
32957941 CAATTGAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTAAAAATATATTTAT
Found at i:32958081 original size:28 final size:28
Alignment explanation
Indices: 32958041--32958099 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
32958031 TATAAAAAAC
*
32958041 TTTATCTATTTTTGAAAATTTTATCTAT
1 TTTATCTAATTTTGAAAATTTTATCTAT
* * * * *
32958069 TTTATTTAATTTTTAGATTTTTATGTAT
1 TTTATCTAATTTTGAAAATTTTATCTAT
32958097 TTT
1 TTT
32958100 TAAAAAGAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.66
Consensus pattern (28 bp):
TTTATCTAATTTTGAAAATTTTATCTAT
Found at i:32960246 original size:18 final size:18
Alignment explanation
Indices: 32960211--32960265 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
32960201 CCTTGCTCTT
*
32960211 ATTAA-AAATTATAAAAA
1 ATTAATAAATTTTAAAAA
32960228 ATTAATAAATTTTAGAAAA
1 ATTAATAAATTTTA-AAAA
*
32960247 A-TATTAAATTTTAATAAA
1 ATTAATAAATTTTAA-AAA
32960265 A
1 A
32960266 ATATTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 6 0.18
18 22 0.67
19 5 0.15
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
ATTAATAAATTTTAAAAA
Found at i:32960265 original size:19 final size:18
Alignment explanation
Indices: 32960233--32960273 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
32960223 AAAAAATTAA
32960233 TAAATTTTAGAAAAATAT
1 TAAATTTTAGAAAAATAT
*
32960251 TAAATTTTAATAAAAATAT
1 TAAATTTT-AGAAAAATAT
32960270 TAAA
1 TAAA
32960274 AAATATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
TAAATTTTAGAAAAATAT
Found at i:32960314 original size:35 final size:36
Alignment explanation
Indices: 32960260--32960338 Score: 106
Period size: 35 Copynumber: 2.2 Consensus size: 36
32960250 TTAAATTTTA
*** *
32960260 ATAAAAATATTAAAAAATATATTTTTTTATAAATATC
1 ATAAAAATA-TAAAAAATATAAAATTTTATAAAAATC
32960297 ATAAAAATA-AAAAAATATAAAATTTTATAAAAATC
1 ATAAAAATATAAAAAATATAAAATTTTATAAAAATC
32960332 ATAAAAA
1 ATAAAAA
32960339 ATTGATGACC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
35 29 0.76
37 9 0.24
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (36 bp):
ATAAAAATATAAAAAATATAAAATTTTATAAAAATC
Found at i:32960540 original size:36 final size:36
Alignment explanation
Indices: 32960489--32960567 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
32960479 ATAAAAGTTT
* *
32960489 TTTACAAAATTTATATTTCTTTACATTT-TGTATAA
1 TTTATAAAATTTATATTTCTTTACATTTCTATATAA
* * *
32960524 TTTATAAAATTTTATATTTTTTTATATTTCTATATAT
1 TTTATAAAA-TTTATATTTCTTTACATTTCTATATAA
32960561 TTTATAA
1 TTTATAA
32960568 TTTTTTTACA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 8 0.22
36 17 0.46
37 12 0.32
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.59
Consensus pattern (36 bp):
TTTATAAAATTTATATTTCTTTACATTTCTATATAA
Found at i:32960581 original size:19 final size:18
Alignment explanation
Indices: 32960559--32960610 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
32960549 ATTTCTATAT
32960559 ATTTTATAATTTTTTTACA
1 ATTTT-TAATTTTTTTACA
* * *
32960578 ATTTTTTATATTTTTACG
1 ATTTTTAATTTTTTTACA
32960596 ATTTTTATATTTTTT
1 ATTTTTA-ATTTTTT
32960611 CTAATTATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 16 0.59
19 11 0.41
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (18 bp):
ATTTTTAATTTTTTTACA
Found at i:32960587 original size:28 final size:27
Alignment explanation
Indices: 32960532--32960591 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
32960522 AATTTATAAA
*
32960532 ATTTTATATTTTTTTATATTTCTATAT
1 ATTTTATATTTTTTTAAATTTCTATAT
*
32960559 ATTTTATAATTTTTTTACAATTT-TTTAT
1 ATTTTAT-ATTTTTTTA-AATTTCTATAT
32960587 ATTTT
1 ATTTT
32960592 TACGATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 7 0.24
28 18 0.62
29 4 0.14
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (27 bp):
ATTTTATATTTTTTTAAATTTCTATAT
Found at i:32960600 original size:17 final size:18
Alignment explanation
Indices: 32960541--32960609 Score: 68
Period size: 17 Copynumber: 3.8 Consensus size: 18
32960531 AATTTTATAT
* *
32960541 TTTTTTATATTTCTATATA
1 TTTTTTATATTTTTACA-A
* *
32960560 TTTTATAATTTTTTTACAA
1 TTTT-TTATATTTTTACAA
*
32960579 TTTTTTATATTTTTACGA
1 TTTTTTATATTTTTACAA
32960597 -TTTTTATATTTTT
1 TTTTTTATATTTTT
32960610 TCTAATTATT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
17 13 0.31
18 11 0.26
19 9 0.21
20 9 0.21
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.70
Consensus pattern (18 bp):
TTTTTTATATTTTTACAA
Found at i:32960610 original size:10 final size:10
Alignment explanation
Indices: 32960533--32960592 Score: 61
Period size: 10 Copynumber: 6.2 Consensus size: 10
32960523 ATTTATAAAA
32960533 TTTTATATTT
1 TTTTATATTT
32960543 TTTTATATTT
1 TTTTATATTT
* *
32960553 CTATATA-TT
1 TTTTATATTT
*
32960562 TTATA-ATTT
1 TTTTATATTT
* *
32960571 TTTTACAATT
1 TTTTATATTT
32960581 TTTTATATTT
1 TTTTATATTT
32960591 TT
1 TT
32960593 ACGATTTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
8 1 0.02
9 12 0.29
10 28 0.68
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTATATTT
Found at i:32960651 original size:26 final size:28
Alignment explanation
Indices: 32960613--32960665 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 28
32960603 TATTTTTTCT
*
32960613 AATTATTAAT-AAATTT-TTAATATTTG
1 AATTATTAATAAAATTTAATAATATTTG
* *
32960639 AATTTTTATTAAAATTTAATAATATTT
1 AATTATTAATAAAATTTAATAATATTT
32960666 ATAGATTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 8 0.36
27 6 0.27
28 8 0.36
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (28 bp):
AATTATTAATAAAATTTAATAATATTTG
Found at i:32960888 original size:89 final size:89
Alignment explanation
Indices: 32960718--32960889 Score: 265
Period size: 90 Copynumber: 1.9 Consensus size: 89
32960708 TAAAAGCAGA
* *
32960718 GGCTTAATTGCTTTTCTTGAAAAAGTTTTAGGGTATTTTTGATGCATTTTGAAAGTTCAAGTACC
1 GGCTTAATTGCTTTTCTTGAAAAAGTTTGAGGCTATTTTTGATGCATTTTGAAAGTTCAAGTACC
*
32960783 CAATTGAGTGCAAAAAAGGGTAGG
66 CAAATGAGTGCAAAAAAGGGTAGG
*
32960807 GGCTTAATTGCTTTTTTTGAAAAAGGTTTGAGGACT-TTTTTGATGCATTTTGAAAGTTCAAGTA
1 GGCTTAATTGCTTTTCTTGAAAAA-GTTTGAGG-CTATTTTTGATGCATTTTGAAAGTTCAAGTA
* *
32960871 CCTAAATGAGTGGAAAAAA
64 CCCAAATGAGTGCAAAAAA
32960890 AAAGACTTAA
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
89 23 0.31
90 51 0.68
91 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.37
Consensus pattern (89 bp):
GGCTTAATTGCTTTTCTTGAAAAAGTTTGAGGCTATTTTTGATGCATTTTGAAAGTTCAAGTACC
CAAATGAGTGCAAAAAAGGGTAGG
Found at i:32961557 original size:14 final size:15
Alignment explanation
Indices: 32961538--32961569 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
32961528 GGGATATATA
32961538 AAATAT-TAAAAAAT
1 AAATATATAAAAAAT
32961552 AAATATATAAAAAAT
1 AAATATATAAAAAAT
32961567 AAA
1 AAA
32961570 GACACGTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (15 bp):
AAATATATAAAAAAT
Found at i:32963072 original size:29 final size:29
Alignment explanation
Indices: 32963006--32963072 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
32962996 GCAATTTAAT
*
32963006 CCCGTTTTTGTTTTTTTATTTCGAATTCG
1 CCCGTTTTTGTTTTTTTATTTCGAATTAG
* *
32963035 CCCAGTTTTT-TGTTTTTATTTCGATTTAG
1 CCC-GTTTTTGTTTTTTTATTTCGAATTAG
*
32963064 TCCGTTTTT
1 CCCGTTTTT
32963073 AGCAAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 6 0.18
29 21 0.64
30 6 0.18
ACGTcount: A:0.10, C:0.16, G:0.13, T:0.60
Consensus pattern (29 bp):
CCCGTTTTTGTTTTTTTATTTCGAATTAG
Found at i:32963143 original size:12 final size:12
Alignment explanation
Indices: 32963110--32963143 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
32963100 TTAGTGTTAT
32963110 TATTATTATTAG
1 TATTATTATTAG
* *
32963122 TAGTAGTATTAG
1 TATTATTATTAG
32963134 TATTATTATT
1 TATTATTATT
32963144 GCTTTTATAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (12 bp):
TATTATTATTAG
Found at i:32963403 original size:16 final size:15
Alignment explanation
Indices: 32963379--32963412 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
32963369 CATGTAAATA
*
32963379 CTTATATTTTTATAT
1 CTTATATTTATATAT
32963394 CTTATAATTTATATAT
1 CTTAT-ATTTATATAT
32963410 CTT
1 CTT
32963413 TTTTTCATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (15 bp):
CTTATATTTATATAT
Found at i:32964105 original size:110 final size:109
Alignment explanation
Indices: 32963690--32964119 Score: 602
Period size: 108 Copynumber: 3.9 Consensus size: 109
32963680 AAAAAAAAGG
* * *
32963690 AAAATATTTCAAAATAAGGCAATATTTTGCATTTAGAAATTCGAGGAACGTGCCCTAAGGTACTG
1 AAAAT-TTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
* * *
32963755 GGTTCCGATTTCTCGTTCGACCAAATGACTTAGTATCCTTTT-AC
65 GGTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTCAA
* * *
32963799 AAAATTTTCCAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTAG
1 AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
* *
32963864 GTTTTGATTTCTCGTTCCACCAAATGACTTAATATCCTTTTC-A
66 GTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTCAA
32963907 AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
1 AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
*
32963972 GTTTCGATTTCTCGTTCGACCAAAT-AGCTAAATATCCTTTTCAA
66 GTTTCGATTTCTCGTTCGACCAAATGA-CTTAATATCCTTTTCAA
* * * *
32964016 AAAACTTTTCAAAAATAAGGCAATGTTTTACGTTTGGAAATTTGAGAAACGTG-CCTAAGGTGCT
1 AAAA-TTTTC-AAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACT
* *
32964080 GGGTTTCGATTTCACGTTC-AGCCAAATTG-CTGAATATCCT
64 GGGTTTCGATTTCTCGTTCGA-CCAAA-TGACTTAATATCCT
32964120 CTTGATTTTT
Statistics
Matches: 292, Mismatches: 21, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
107 1 0.00
108 192 0.66
109 11 0.04
110 48 0.16
111 40 0.14
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (109 bp):
AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
GTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTCAA
Found at i:32964795 original size:125 final size:125
Alignment explanation
Indices: 32964573--32964824 Score: 495
Period size: 125 Copynumber: 2.0 Consensus size: 125
32964563 TTAAATATAC
32964573 GATCCTCTCATTGCATTTCATTTGTTTTGAGTTATAGTCTTCATCATGTTTTGTATTTTAAATTT
1 GATCCTCTCATTGCATTTCATTTGTTTTGAGTTATAGTCTTCATCATGTTTTGTATTTTAAATTT
*
32964638 TTATATCTTTCTGCACATTGTATTGCATGACCGTTGGTCACGCCTTTTAAGTGGGAGTGA
66 TTATATCTTTCTGCACATTGCATTGCATGACCGTTGGTCACGCCTTTTAAGTGGGAGTGA
32964698 GATCCTCTCATTGCATTTCATTTGTTTTGAGTTATAGTCTTCATCATGTTTTGTATTTTAAATTT
1 GATCCTCTCATTGCATTTCATTTGTTTTGAGTTATAGTCTTCATCATGTTTTGTATTTTAAATTT
32964763 TTATATCTTTCTGCACATTGCATTGCATGACCGTTGGTCACGCCTTTTAAGTGGGAGTGA
66 TTATATCTTTCTGCACATTGCATTGCATGACCGTTGGTCACGCCTTTTAAGTGGGAGTGA
32964823 GA
1 GA
32964825 AGCTACTCCT
Statistics
Matches: 126, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
125 126 1.00
ACGTcount: A:0.20, C:0.16, G:0.18, T:0.46
Consensus pattern (125 bp):
GATCCTCTCATTGCATTTCATTTGTTTTGAGTTATAGTCTTCATCATGTTTTGTATTTTAAATTT
TTATATCTTTCTGCACATTGCATTGCATGACCGTTGGTCACGCCTTTTAAGTGGGAGTGA
Found at i:32967570 original size:6 final size:6
Alignment explanation
Indices: 32967561--32967622 Score: 67
Period size: 6 Copynumber: 10.7 Consensus size: 6
32967551 AAGAAAAAGA
* * *
32967561 AAAATC AAAATC AAAATC AAAGTC AAAATG AAAATG AAAA-- AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
32967607 AAAAATC AAAAT- AAAA
1 -AAAATC AAAATC AAAA
32967623 AAAACAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
4 4 0.08
5 4 0.08
6 36 0.72
7 6 0.12
ACGTcount: A:0.71, C:0.10, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:32967631 original size:28 final size:28
Alignment explanation
Indices: 32967573--32967632 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
32967563 AATCAAAATC
* *
32967573 AAAATCAAAGTCAAAATGAAAATGAAAA
1 AAAATCAAAATCAAAATGAAAATAAAAA
32967601 AAAATCAAAAATCAAAAT-AAAA-AAAACA
1 AAAATC-AAAATCAAAATGAAAATAAAA-A
32967629 AAAA
1 AAAA
32967633 GAAAGAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 3 0.11
28 15 0.54
29 10 0.36
ACGTcount: A:0.75, C:0.08, G:0.05, T:0.12
Consensus pattern (28 bp):
AAAATCAAAATCAAAATGAAAATAAAAA
Found at i:32968620 original size:7 final size:7
Alignment explanation
Indices: 32968610--32968668 Score: 95
Period size: 7 Copynumber: 8.7 Consensus size: 7
32968600 AAAATTAAAT
32968610 AAATGAA
1 AAATGAA
32968617 AAATGAA
1 AAATGAA
32968624 AAATG-A
1 AAATGAA
32968630 AAATGAA
1 AAATGAA
32968637 AAATGAA
1 AAATGAA
32968644 AAATGAA
1 AAATGAA
32968651 AAATG-A
1 AAATGAA
*
32968657 AAGTGAA
1 AAATGAA
32968664 AAATG
1 AAATG
32968669 GAGAGGCTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
6 11 0.23
7 37 0.77
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (7 bp):
AAATGAA
Found at i:32968635 original size:20 final size:21
Alignment explanation
Indices: 32968610--32968668 Score: 95
Period size: 20 Copynumber: 2.9 Consensus size: 21
32968600 AAAATTAAAT
32968610 AAATGAAAAATGAAAAATG-A
1 AAATGAAAAATGAAAAATGAA
32968630 AAATGAAAAATGAAAAATGAA
1 AAATGAAAAATGAAAAATGAA
*
32968651 AAATG-AAAGTGAAAAATG
1 AAATGAAAAATGAAAAATG
32968669 GAGAGGCTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
20 31 0.84
21 6 0.16
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (21 bp):
AAATGAAAAATGAAAAATGAA
Found at i:32968647 original size:27 final size:27
Alignment explanation
Indices: 32968610--32968668 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
32968600 AAAATTAAAT
32968610 AAATGAAAAATGAAAAATGAAAATGAA
1 AAATGAAAAATGAAAAATGAAAATGAA
*
32968637 AAATGAAAAATGAAAAATGAAAGTGAA
1 AAATGAAAAATGAAAAATGAAAATGAA
32968664 AAATG
1 AAATG
32968669 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (27 bp):
AAATGAAAAATGAAAAATGAAAATGAA
Found at i:32969966 original size:44 final size:46
Alignment explanation
Indices: 32969862--32969970 Score: 159
Period size: 46 Copynumber: 2.4 Consensus size: 46
32969852 ATACAGGTCT
* *
32969862 TATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTGCAAATCC
1 TATCTCCCTGAGATTACAGCGGAGCAGACCAAAGAATTGCAAATCC
* **
32969908 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-A-TGGTAATCC
1 TATCTCCCTGAGATTACAGCGGAGCAGACCAAAGAATTGCAAATCC
32969952 TATCTCCCTGAGATTACAG
1 TATCTCCCTGAGATTACAG
32969971 TGTAGCGGAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
44 26 0.45
45 1 0.02
46 31 0.53
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (46 bp):
TATCTCCCTGAGATTACAGCGGAGCAGACCAAAGAATTGCAAATCC
Found at i:32970138 original size:44 final size:44
Alignment explanation
Indices: 32970077--32970522 Score: 178
Period size: 44 Copynumber: 9.9 Consensus size: 44
32970067 GAAGAATTTC
*
32970077 AGATCTTATCTCTCTGAGATTACAGCAGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAG
* * ** *
32970121 AGATCTTATTTCCCTGAGGTTACAGGGGAGCAGATTGAAGCTAG
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAG
* * ** ** *** *
32970165 TA-ATCCTATCTCTCTGA-AGTTACAGTGGAGTGGATT-AAAATAA
1 -AGATCTTATCTCCCTGAGA-TTACAGCAGAGCAGATTGAAGCCAG
* *
32970208 ATGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGGTCACATCAGATTGAAGCCAG
1 A-GATCTTATCTCCCTGAGA-TTACAG--CAG-A-G------CAGATTGAAGCCAG
* *
32970263 AGATCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGCTAG
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAG
* * ** * *** *
32970307 TA-ATCCTATCTCTCTGA-AGTTACAGTGGAGCGGATT-AAAATAA
1 -AGATCTTATCTCCCTGAGA-TTACAGCAGAGCAGATTGAAGCCAG
* * * * *
32970350 AGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCT-CA-TCAG
1 A-GATCTTATCTCCCTGAGATTACAGCAGAGCAGAT-TGAAGCCAG
* ** * ** * *
32970394 -G-TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAG-AATTTC
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCA---G
* * ** *
32970438 AGATCTTATTTCCCTGAGGTTACAGTGGAGCAGATTGAAGCTAG
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAG
* *
32970482 AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGC
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGC
32970523 TAGTAATCCT
Statistics
Matches: 306, Mismatches: 66, Indels: 60
0.71 0.15 0.14
Matches are distributed among these distances:
41 30 0.10
42 3 0.01
43 9 0.03
44 188 0.61
45 5 0.02
46 34 0.11
47 2 0.01
48 1 0.00
50 1 0.00
51 1 0.00
52 2 0.01
54 25 0.08
55 5 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAG
Found at i:32970177 original size:175 final size:175
Alignment explanation
Indices: 32969854--32970560 Score: 674
Period size: 175 Copynumber: 4.0 Consensus size: 175
32969844 GGTTCATTAT
* * *
32969854 ACAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTGCAAATCCTATCTCCCTGA
1 ACAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGA
* ** * * * * *
32969919 GATTACAGCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGTGTAGCGGATTAA
66 GATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTGA
* * *
32969984 AACTAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
131 AACTAAGAATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCACA
* * * *
32970029 CCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCTCTGA
1 ACAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGA
* * * * *
32970094 GATTACAGCAGAGCAGATTGAAGCCAG-AGATCTTATTTCCCTGAGGTTACAGGGGAGCAGATTG
66 GATTACAGCAGAGCAGATTGAAGCTAGTA-ATCCTATCTCCCTGAGATTACAGTGGAGCAGATTG
* * * * *
32970158 AAGCT-AGTAATCCTATCTCTCTGAAGTTACAGTGGAGTGGATTAAAA
130 AAACTAAG-AATCCTATCTCTCTGAAGTTACAGTAGAGTAGA-TCACA
* * * * * * **
32970205 TAAATGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGGTCACATCAGATTGAA-GCCAGAGATC
1 -ACA-GGTCTTATCTCCCTGAGA-TTACAGT-G-G-A-G-CAGA-CCGA-AGAATTTC--AGATC
* *
32970268 TTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGA-AGTTACAG
54 TTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA-TTACAG
* * * * * * *
32970332 TGGAGCGGATT-AAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCTCA
118 TGGAGCAGATTGAAACT-AAGAATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCACA
* * * *
32970390 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATTTCCCTGA
1 ACAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGA
* ** * * *
32970455 GGTTACAGTGGAGCAGATTGAAGCTAG-AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTG
66 GATTACAGCAGAGCAGATTGAAGCTAGTA-ATCCTATCTCCCTGAGATTACAGTGGAGCAGATTG
* *
32970519 AAGCT-AGTAATCCTATCTCTCTGAAGTTACAGTGGAGTAGAT
130 AAACTAAG-AATCCTATCTCTCTGAAGTTACAGTAGAGTAGAT
32970561 TAAAAAAAAA
Statistics
Matches: 420, Mismatches: 87, Indels: 50
0.75 0.16 0.09
Matches are distributed among these distances:
174 6 0.01
175 235 0.56
176 9 0.02
177 6 0.01
178 22 0.05
179 2 0.00
180 2 0.00
181 2 0.00
182 1 0.00
183 24 0.06
184 5 0.01
185 8 0.02
186 95 0.23
187 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (175 bp):
ACAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGA
GATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTGA
AACTAAGAATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCACA
Found at i:32970298 original size:142 final size:142
Alignment explanation
Indices: 32970107--32970393 Score: 475
Period size: 142 Copynumber: 2.0 Consensus size: 142
32970097 TACAGCAGAG
* * **
32970107 CAGATTGAAGCCAGAGATCTTATTTCCCTGAGGTTACAGGGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCT
* * *
32970172 ATCTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAG
66 ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
*
32970237 AGTAGGTCACAT
131 AGTAGATCACAT
*
32970249 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCT
*
32970314 ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAG
66 ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
*
32970379 AGTAGATCTCAT
131 AGTAGATCACAT
32970391 CAG
1 CAG
32970394 GTCTTATCTC
Statistics
Matches: 134, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
142 134 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (142 bp):
CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCT
ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
AGTAGATCACAT
Found at i:32970523 original size:44 final size:44
Alignment explanation
Indices: 32970250--32970605 Score: 237
Period size: 44 Copynumber: 8.1 Consensus size: 44
32970240 AGGTCACATC
* **
32970250 AGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGT
1 AGATTGAAGCTAGAGATCTTATCTCCCTGAGATTACAGTGGAGT
* * *
32970294 AGATTGAAGCTAGTA-ATCCTATCTCTCTGA-AGTTACAGTGGAGC
1 AGATTGAAGCTAG-AGATCTTATCTCCCTGAGA-TTACAGTGGAGT
* ** * * * **
32970338 GGATT-AAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGT
1 AGATTGAAGCTAGA-GATCTTATCTCCCTGAGATTACAGTGGAGT
* * *
32970382 AGATCT-CATC-AG-G-TCTTATCTCCCTGAGGTTACAGTGGAGT
1 AGAT-TGAAGCTAGAGATCTTATCTCCCTGAGATTACAGTGGAGT
** * ** * * *
32970423 AGACCGAAGAATTTCAGATCTTATTTCCCTGAGGTTACAGTGGAGC
1 AGATTGAAG--CTAGAGATCTTATCTCCCTGAGATTACAGTGGAGT
*
32970469 AGATTGAAGCTAGAGATCTTATCTCCCTGAGATTACAGCGGAGT
1 AGATTGAAGCTAGAGATCTTATCTCCCTGAGATTACAGTGGAGT
* *
32970513 AGATTGAAGCTAGTA-ATCCTATCTCTCTGA-AGTTACAGTGGAGT
1 AGATTGAAGCTAG-AGATCTTATCTCCCTGAGA-TTACAGTGGAGT
* *** * * *
32970557 AGATTAAAAAAAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGT
1 AGATTGAAGCTAGA-GATCTTATCTCCCTGAGA-TTACAGTGGAGT
32970602 AGAT
1 AGAT
32970606 CACCTCAGAT
Statistics
Matches: 245, Mismatches: 51, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
41 29 0.12
42 2 0.01
43 7 0.03
44 138 0.56
45 36 0.15
46 33 0.13
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (44 bp):
AGATTGAAGCTAGAGATCTTATCTCCCTGAGATTACAGTGGAGT
Found at i:32972119 original size:3 final size:3
Alignment explanation
Indices: 32972111--32972148 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
32972101 TATTTTAGTG
*
32972111 TTA TTA TTA TTA TTA TTA TTA TTA TTA GTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
32972149 GCTTTTATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:32972884 original size:108 final size:108
Alignment explanation
Indices: 32972684--32973092 Score: 649
Period size: 108 Copynumber: 3.8 Consensus size: 108
32972674 TTTAAAAAGG
* * *
32972684 AAAATATTTCAAAATAAGGCAATATTTTGCATTTAGAAATTCGAGGAACGTGCCCTAAGGTACTG
1 AAAAT-TTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
* *
32972749 GGTTCCGATTTCTCGTTCGACCAAATGACTTAGTATCCTTTTCA
65 GGTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTCA
* *
32972793 AAAATTTTCCAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
1 AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
*
32972858 GTTTCGATTTCTCGTTCCACCAAATGACTTAATATCCTTTTCA
66 GTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTCA
32972901 AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
1 AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
*
32972966 GTTTCGATTTCTCGTTCGACCAAAT-AGCTAAATATCCTTTTCAA
66 GTTTCGATTTCTCGTTCGACCAAATGA-CTTAATATCCTTTTC-A
* * *
32973010 AAAACTTTTCAAAAATAAGGCAATGTTTTACGTTTGGAAATTCGAGAAACGTGCCCTAAGGTGCT
1 AAAA-TTTTC-AAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACT
*
32973075 GGGTTTCGATTTCACGTT
64 GGGTTTCGATTTCTCGTT
32973093 TAGCCAAATT
Statistics
Matches: 282, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.00
108 198 0.70
109 10 0.04
110 5 0.02
111 68 0.24
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (108 bp):
AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
GTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTCA
Found at i:32976498 original size:39 final size:41
Alignment explanation
Indices: 32976440--32976568 Score: 130
Period size: 39 Copynumber: 3.3 Consensus size: 41
32976430 ATGGAAGAAA
*
32976440 AAGAAA-AAG-AAAAATCAAAATCAAAGTCAAAATGAAAAT
1 AAGAAAGAAGAAAAAATCAAAATCAAAGACAAAATGAAAAT
* * ** *
32976479 AA-AAA-AATAAAAAATCAAAAT-AAA-AAAAAACAAAAAG
1 AAGAAAGAAGAAAAAATCAAAATCAAAGACAAAATGAAAAT
32976516 AAGAAAGAAGAAAAAATCAAAATC-AAGACCAAAATGAAAAT
1 AAGAAAGAAGAAAAAATCAAAATCAAAGA-CAAAATGAAAAT
*
32976557 GAGAAA-AAGAAA
1 AAGAAAGAAGAAA
32976569 GAAGAATGAA
Statistics
Matches: 72, Mismatches: 12, Indels: 11
0.76 0.13 0.12
Matches are distributed among these distances:
37 10 0.14
38 11 0.15
39 31 0.43
40 7 0.10
41 13 0.18
ACGTcount: A:0.74, C:0.07, G:0.10, T:0.09
Consensus pattern (41 bp):
AAGAAAGAAGAAAAAATCAAAATCAAAGACAAAATGAAAAT
Found at i:32976513 original size:21 final size:22
Alignment explanation
Indices: 32976467--32976513 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
32976457 AAATCAAAGT
*
32976467 CAAAATGAAAATAAAAAAATAA
1 CAAAATCAAAATAAAAAAATAA
32976489 -AAAATCAAAATAAAAAAA-AA
1 CAAAATCAAAATAAAAAAATAA
32976509 CAAAA
1 CAAAA
32976514 AGAAGAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.81, C:0.06, G:0.02, T:0.11
Consensus pattern (22 bp):
CAAAATCAAAATAAAAAAATAA
Found at i:32977509 original size:7 final size:7
Alignment explanation
Indices: 32977499--32977544 Score: 76
Period size: 7 Copynumber: 6.7 Consensus size: 7
32977489 AAAATTAAAT
32977499 AAATGAA
1 AAATGAA
32977506 AAATGAA
1 AAATGAA
32977513 AAATGAA
1 AAATGAA
32977520 AAATGAA
1 AAATGAA
32977527 AAATG-A
1 AAATGAA
*
32977533 AAGTGAA
1 AAATGAA
32977540 AAATG
1 AAATG
32977545 GAGAGGCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 5 0.14
7 31 0.86
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.15
Consensus pattern (7 bp):
AAATGAA
Found at i:32977523 original size:21 final size:20
Alignment explanation
Indices: 32977499--32977544 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
32977489 AAAATTAAAT
32977499 AAATGAAAAATGAAAAATGAA
1 AAATGAAAAATG-AAAATGAA
*
32977520 AAATGAAAAATGAAAGTGAA
1 AAATGAAAAATGAAAATGAA
32977540 AAATG
1 AAATG
32977545 GAGAGGCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.15
Consensus pattern (20 bp):
AAATGAAAAATGAAAATGAA
Found at i:32978840 original size:44 final size:46
Alignment explanation
Indices: 32978736--32978844 Score: 159
Period size: 46 Copynumber: 2.4 Consensus size: 46
32978726 ATACAGGTCT
* *
32978736 TATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTGCAAATCC
1 TATCTCCCTGAGATTACAGCGGAGCAGACCAAAGAATTGCAAATCC
* **
32978782 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-A-TGGTAATCC
1 TATCTCCCTGAGATTACAGCGGAGCAGACCAAAGAATTGCAAATCC
32978826 TATCTCCCTGAGATTACAG
1 TATCTCCCTGAGATTACAG
32978845 TGTAGCGGAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
44 26 0.45
45 1 0.02
46 31 0.53
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (46 bp):
TATCTCCCTGAGATTACAGCGGAGCAGACCAAAGAATTGCAAATCC
Found at i:32979018 original size:44 final size:44
Alignment explanation
Indices: 32978733--32979435 Score: 233
Period size: 44 Copynumber: 15.8 Consensus size: 44
32978723 ATTATACAGG
* ** * *
32978733 TCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAG-AATTGCAAA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCA--G-AGA
* ** ***
32978779 TCCTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTA-A
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG-AGA
* * * * * * *
32978823 TCCTATCTCCCTGAGATTACAGTGTAGCGGATTAAAACTA-AGGA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGA-GA
* ** * * *
32978867 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCA-CCAG-G-
1 TCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCCAGAGA
* * * ** * *
32978908 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAG-AATTTTAGA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCA---GAGA
32978954 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGAGA
* * * *
32978998 TCTTATTTCCTTGAGGTTACAGCGGAGCAGATTGAAGCTAGTA-A
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG-AGA
* * * ** *** *
32979042 TCCTATCTCTCTGA-AGTTACAGTGGAGTGGATT-AAAATAAATGA
1 TCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCCAGA-GA
* *
32979086 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATTACATCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGA-TTACAG-CG-G-AG-------CAGATTGAAGCCAGAGA
* * ** *
32979140 TCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGATA-ATAA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGA-GA
* * * * *** *
32979184 TCCTATCTCTCTGA-AGTTACAGTGGAGCGGATT-AAAATAAAGGA
1 TCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCCAGA-GA
* * * * * * *
32979228 TCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCA-TCAG-G-
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGAGA
* * * ** * *
32979269 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAG-AATTTCAGA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCA---GAGA
* * * *
32979315 TCTTATTTCCCTGAGGTTACAGTGGAGCAGATTGAAGCTAGAGA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGAGA
* *
32979359 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA-A
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG-AGA
* * * *
32979403 TCCTATCTCTCTGA-AGTTACAGTGGAGTAGATT
1 TCTTATCTCCCTGAGA-TTACAGCGGAGCAGATT
32979436 AAAAAAAAAG
Statistics
Matches: 504, Mismatches: 110, Indels: 88
0.72 0.16 0.13
Matches are distributed among these distances:
41 60 0.12
42 5 0.01
43 15 0.03
44 280 0.56
45 8 0.02
46 99 0.20
47 4 0.01
51 2 0.00
52 1 0.00
54 25 0.05
55 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGAGA
Found at i:32979051 original size:175 final size:175
Alignment explanation
Indices: 32978728--32979434 Score: 647
Period size: 175 Copynumber: 4.0 Consensus size: 175
32978718 GGTTCATTAT
* * * *
32978728 ACAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTGCAAATCCTATCTCCCTGA
1 ACAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGA
** * * * * *
32978793 GATTACAGCGGAGCAGATCAAAGATGGTA-ATCCTATCTCCCTGAGATTACAGTGTAGCGGATTA
66 GATTACAGCGGAGCAGATTGAAGATAG-AGATCCTATCTCCCTGAGATTACAGCGGAGCAGATTG
* *
32978857 AAACTAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
130 AAACTAAGAATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
* * *
32978903 CCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTTAGATCTTATCTCCCTGA
1 ACAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGA
** * * * *
32978968 GATTACAGCGGAGCAGATTGAAGCCAGAGATCTTATTTCCTTGAGGTTACAGCGGAGCAGATTGA
66 GATTACAGCGGAGCAGATTGAAGATAGAGATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGA
* * * ***
32979033 AGCT-AGTAATCCTATCTCTCTGAAGTTACAGTGGAGTGGATTAAAA
131 AACTAAG-AATCCTATCTCTCTGAAGTTACAGTAGAGTAGA-TCGCA
* * * * * * * **
32979079 TAAATGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATTACATCAGATTGAA-GCCAGAGATC
1 -ACA-GGTCTTATCTCCCTGAGA-TTACAGT-G-G-A-A-CAGA-CCGA-AGAATTTC--AGATC
* * * *
32979142 TTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGATA-ATAATCCTATCTCTCTGA-AGTTACA
54 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGA-GATCCTATCTCCCTGAGA-TTACA
* * * * * * *
32979205 GTGGAGCGGATT-AAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCA
117 GCGGAGCAGATTGAAACT-AAGAATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
* * ** *
32979264 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATTTCCCTGA
1 ACAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGA
* * * * *
32979329 GGTTACAGTGGAGCAGATTGAAGCTAGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGA
66 GATTACAGCGGAGCAGATTGAAGATAGAGATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGA
* *
32979394 AGCT-AGTAATCCTATCTCTCTGAAGTTACAGTGGAGTAGAT
131 AACTAAG-AATCCTATCTCTCTGAAGTTACAGTAGAGTAGAT
32979435 TAAAAAAAAA
Statistics
Matches: 414, Mismatches: 93, Indels: 50
0.74 0.17 0.09
Matches are distributed among these distances:
174 5 0.01
175 233 0.56
176 10 0.02
177 6 0.01
178 23 0.06
179 1 0.00
180 2 0.00
181 2 0.00
182 2 0.00
183 23 0.06
184 4 0.01
185 9 0.02
186 92 0.22
187 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (175 bp):
ACAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGA
GATTACAGCGGAGCAGATTGAAGATAGAGATCCTATCTCCCTGAGATTACAGCGGAGCAGATTGA
AACTAAGAATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
Found at i:32979237 original size:142 final size:142
Alignment explanation
Indices: 32978981--32979259 Score: 459
Period size: 142 Copynumber: 2.0 Consensus size: 142
32978971 TACAGCGGAG
* * * * * *
32978981 CAGATTGAAGCCAGAGATCTTATTTCCTTGAGGTTACAGCGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGATAATAATCCT
* * *
32979046 ATCTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAG
66 ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
32979111 AGTAGATTACAT
131 AGTAGATTACAT
*
32979123 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGATAATAATCCT
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGATAATAATCCT
*
32979188 ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAG
66 ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
32979253 AGTAGAT
131 AGTAGAT
32979260 CGCATCAGGT
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
142 126 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (142 bp):
CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGATAATAATCCT
ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
AGTAGATTACAT
Found at i:32979285 original size:41 final size:41
Alignment explanation
Indices: 32979228--32979390 Score: 146
Period size: 46 Copynumber: 3.8 Consensus size: 41
32979218 AAATAAAGGA
* * *
32979228 TCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCATCAGG
1 TCTTATCTCCCTGAGGTTACAGCGGAGTAGATCGAATCAGG
* * *
32979269 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGCGGAGTAGATC---GAA--TCAGG
* * * * *
32979315 TCTTATTTCCCTGAGGTTACAGTGGAGCAGATTGAAGCTAGAG
1 TCTTATCTCCCTGAGGTTACAGCGGAGTAGATCGAATC-AG-G
*
32979358 ATCTTATCTCCCTGAGATTACAGCGGAGTAGAT
1 -TCTTATCTCCCTGAGGTTACAGCGGAGTAGAT
32979391 TGAAGCTAGT
Statistics
Matches: 98, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
41 30 0.31
42 2 0.02
43 3 0.03
44 30 0.31
46 33 0.34
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (41 bp):
TCTTATCTCCCTGAGGTTACAGCGGAGTAGATCGAATCAGG
Found at i:32982291 original size:245 final size:238
Alignment explanation
Indices: 32981586--32982301 Score: 869
Period size: 232 Copynumber: 3.0 Consensus size: 238
32981576 ATTTGGAAGG
* *
32981586 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGTATAAGGGTACTTAAAAAGAAAAAAAAAT
1 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGAT-AGGGTACTTAAAAAG----AAAAAC
* *
32981651 GAATAGTCGGAACAACATAGGAAAAATATTTACATCTTCTCATTTATTTGATTGTGAAAGT-TAA
61 GAATAGTCAGAACAACATAGGAAAAATATTTACATCTTCCCATTTATTTGATTGTGAAAGTATAA
* * * *
32981715 -TGAACAATGGGATATGA-TCTATGAAGGTGTTGAAGTTACTGAATGTCTTTCTGGATATTTGAT
126 GTGAACAATGGAATATGATTTTTTG-AGGTGTTGAAGTTACTGAATGTCTTTCTGAATATTTGAT
* * * ** *
32981778 GTTTGGTAATAAGTTTTTTATTTATTTATGATCTACCGATAGGTGCCCT
190 GTCTGGTAATAAGCTATTCGTTTATTTATGATCTACCGGTAGGTGCCCT
*
32981827 TTGTTAGAGGATCATATCTCCTTTGGAAATGTGTTGGATAGGG---TTAAAAAGAAAAACGAATA
1 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGGTACTTAAAAAGAAAAACGAATA
* * * *
32981889 GTCAAAACAACACAGG-AAAATAGTTACATCTTCCCATTTATTTGGTTGTGAAAGTA-AAG-GAA
66 GTCAGAACAACATAGGAAAAATATTTACATCTTCCCATTTATTTGATTGTGAAAGTATAAGTGAA
* * * * * *
32981951 CAATGGGAA-ATGATCTATTAAGGTGTTGAAGTTATTGAATGAT-TTTCTGAATATTTAATGGCT
131 CAAT-GGAATATGATTTTTTGAGGTGTTGAAGTTACTGAATG-TCTTTCTGAATATTTGATGTCT
* *
32982014 GGTAATAAGCTATTCGTTTATTTATGATCTACCGGTGGGTGCTCT
194 GGTAATAAGCTATTCGTTTATTTATGATCTACCGGTAGGTGCCCT
*
32982059 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGGTTACTTAAAAAGAAAAACGAGT
1 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGG-TACTTAAAAAGAAAAACGAAT
* *
32982124 AGTCAGAACAACATAGGAAAAAAAATTTACATCTTTCCCATTTGTTTGATTGTGAAAGTGAATGA
65 AGTCAGAACAACATAGG-AAAAATATTTACATC-TTCCCATTTATTTGATTGTGAAAGT--AT-A
* * * *
32982189 AGTTGAACAATGAAATATAATTTTTTGAGGTGTTGAAGTTACTGAACGTCTTTCTGCATATTTGA
125 AG-TGAACAATGGAATATGATTTTTTGAGGTGTTGAAGTTACTGAATGTCTTTCTGAATATTTGA
* * * * *
32982254 TGTCAGGTAATAAGCTATTGGTTTATTTCTGATCTACCAGTTGGTGCC
189 TGTCTGGTAATAAGCTATTCGTTTATTTATGATCTACCGGTAGGTGCC
32982302 ATTGTATAAG
Statistics
Matches: 404, Mismatches: 51, Indels: 36
0.82 0.10 0.07
Matches are distributed among these distances:
232 165 0.41
233 28 0.07
236 32 0.08
237 8 0.02
238 12 0.03
239 23 0.06
240 4 0.01
241 38 0.09
243 3 0.01
244 4 0.01
245 87 0.22
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.36
Consensus pattern (238 bp):
TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGGTACTTAAAAAGAAAAACGAATA
GTCAGAACAACATAGGAAAAATATTTACATCTTCCCATTTATTTGATTGTGAAAGTATAAGTGAA
CAATGGAATATGATTTTTTGAGGTGTTGAAGTTACTGAATGTCTTTCTGAATATTTGATGTCTGG
TAATAAGCTATTCGTTTATTTATGATCTACCGGTAGGTGCCCT
Found at i:32983900 original size:96 final size:96
Alignment explanation
Indices: 32983736--32983980 Score: 323
Period size: 96 Copynumber: 2.6 Consensus size: 96
32983726 CAGTAGTTCG
* * * *
32983736 GTGAACAATACCGGGAATCCTCCTGCATCCCTACCAAACAGCCAACTGAACTCCTTTGCCAGTTT
1 GTGAACAATTCTGGGAACCCTCCTGCATCCCTACCGAACAGCCAACTGAACTCCTTTGCCAGTTT
* *** *
32983801 TAACAGCCTGAGTGC-GATCACTTCTAATTCT
66 TAACAGCC-CAACCCAGATCACTACTAATTCT
*
32983832 GTGAACAATTCTGGGAACCCTCCTGCATCCCTACCGAACAGCCAACCGAACTCCTCTT-CCAGTT
1 GTGAACAATTCTGGGAACCCTCCTGCATCCCTACCGAACAGCCAACTGAACTCCT-TTGCCAGTT
* * *
32983896 TTAACAGCCCAACCCAGTTCAGTACTAGTTCT
65 TTAACAGCCCAACCCAGATCACTACTAATTCT
* *
32983928 GTGAACAATTCTGGGAACTCTCCTGCATCCCTACCGAACAACCAACTGAACTC
1 GTGAACAATTCTGGGAACCCTCCTGCATCCCTACCGAACAGCCAACTGAACTC
32983981 TACTGCTTTT
Statistics
Matches: 131, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
95 2 0.02
96 127 0.97
97 2 0.02
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.24
Consensus pattern (96 bp):
GTGAACAATTCTGGGAACCCTCCTGCATCCCTACCGAACAGCCAACTGAACTCCTTTGCCAGTTT
TAACAGCCCAACCCAGATCACTACTAATTCT
Found at i:32987028 original size:31 final size:31
Alignment explanation
Indices: 32986990--32987061 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
32986980 ACATCCAAGG
** * *
32986990 TCACTAAACTATTAGTATGTTTATGTTTTGA
1 TCACTAAACTATTAGTAAATTTACGTTTCGA
*
32987021 TCACTAAATTATTAGTAAATTTACGTTTCGA
1 TCACTAAACTATTAGTAAATTTACGTTTCGA
*
32987052 TCACTCAACT
1 TCACTAAACT
32987062 TCAAAAAGTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (31 bp):
TCACTAAACTATTAGTAAATTTACGTTTCGA
Found at i:32990856 original size:29 final size:30
Alignment explanation
Indices: 32990808--32990866 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
32990798 GTATAATGTC
32990808 ATACATAAATTTTAATTTTG-TGTGATTTT
1 ATACATAAATTTTAATTTTGTTGTGATTTT
*
32990837 ATACATGAAATTTTAA-TTTGTTTTGATTTT
1 ATACAT-AAATTTTAATTTTGTTGTGATTTT
32990867 CACAAATTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (30 bp):
ATACATAAATTTTAATTTTGTTGTGATTTT
Found at i:32995108 original size:2 final size:2
Alignment explanation
Indices: 32995101--32995135 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
32995091 CTCTAATCAA
32995101 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32995136 AAAAGTAACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:33001525 original size:21 final size:19
Alignment explanation
Indices: 33001501--33001552 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
33001491 CACGACCTGG
33001501 CCACACGGCCGTATAACCTTT
1 CCACACGGCCGTATAA-C-TT
*
33001522 CCACACGG-CTTATAACTT
1 CCACACGGCCGTATAACTT
33001540 CTCACACGGCCGT
1 C-CACACGGCCGT
33001553 GTGACCCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 3 0.11
19 8 0.30
20 8 0.30
21 8 0.30
ACGTcount: A:0.23, C:0.38, G:0.15, T:0.23
Consensus pattern (19 bp):
CCACACGGCCGTATAACTT
Found at i:33001857 original size:38 final size:38
Alignment explanation
Indices: 33001795--33001893 Score: 92
Period size: 38 Copynumber: 2.6 Consensus size: 38
33001785 ACTACATTAT
* * **
33001795 CGATTGCATGTTCAGCAT-TACTACTGTTACTATTGAAC
1 CGATTACATGTTAAGCATGT-CTACTACTACTATTGAAC
* * *
33001833 CGATTACATGTTAAGCATGTCTACTACTATTGTTGAAT
1 CGATTACATGTTAAGCATGTCTACTACTACTATTGAAC
* * *
33001871 TGAATACATATTAAGCATGTCTA
1 CGATTACATGTTAAGCATGTCTA
33001894 TTATTTTTAC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
38 49 0.98
39 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.37
Consensus pattern (38 bp):
CGATTACATGTTAAGCATGTCTACTACTACTATTGAAC
Found at i:33004263 original size:2 final size:2
Alignment explanation
Indices: 33004251--33004294 Score: 72
Period size: 2 Copynumber: 22.0 Consensus size: 2
33004241 ATTTTTATTA
33004251 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33004293 AT
1 AT
33004295 TTTCAAGGTC
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 1 0.03
2 37 0.93
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33004417 original size:23 final size:22
Alignment explanation
Indices: 33004350--33004417 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 22
33004340 ATATATCTAT
*
33004350 TTTTTAAATTAATAGAAAATAATA
1 TTTTAAAATTAATAG-AAATAA-A
**
33004374 TTTTAAAATT-AT---AATCTA
1 TTTTAAAATTAATAGAAATAAA
33004392 TTTTAAAATTAATAGAAGATAAA
1 TTTTAAAATTAATAGAA-ATAAA
33004415 TTT
1 TTT
33004418 AAAGTTATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 11
0.68 0.10 0.22
Matches are distributed among these distances:
18 11 0.32
19 5 0.15
22 1 0.03
23 8 0.24
24 9 0.26
ACGTcount: A:0.50, C:0.01, G:0.04, T:0.44
Consensus pattern (22 bp):
TTTTAAAATTAATAGAAATAAA
Found at i:33004427 original size:40 final size:43
Alignment explanation
Indices: 33004339--33004428 Score: 123
Period size: 42 Copynumber: 2.1 Consensus size: 43
33004329 ACAATCTATC
*
33004339 TATATATCTATTTTTTAAATTAATAGAAAATAATATTTTAAAAT
1 TATA-ATCTATTTTTAAAATTAATAGAAAATAATATTTTAAAAT
* *
33004383 TATAATCTA-TTTTAAAATTAATAGAAGATAA-A-TTTAAAGT
1 TATAATCTATTTTTAAAATTAATAGAAAATAATATTTTAAAAT
33004423 TATAAT
1 TATAAT
33004429 AACTAGATCT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
40 13 0.30
41 1 0.02
42 20 0.47
43 5 0.12
44 4 0.09
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.44
Consensus pattern (43 bp):
TATAATCTATTTTTAAAATTAATAGAAAATAATATTTTAAAAT
Found at i:33008007 original size:38 final size:38
Alignment explanation
Indices: 33007912--33008012 Score: 139
Period size: 38 Copynumber: 2.7 Consensus size: 38
33007902 AGTAGCTGAA
* *
33007912 CAATTCAACACTAGCAATACTCATGCTTAACATGTATT
1 CAATTCAACACTAGCAGTAGTCATGCTTAACATGTATT
* *
33007950 CAATTCAACATTCGCAGTAGTCATGCTTAACATGTATT
1 CAATTCAACACTAGCAGTAGTCATGCTTAACATGTATT
* * *
33007988 TAATTCAACACTAGTAGTAGACATG
1 CAATTCAACACTAGCAGTAGTCATG
33008013 ATTTATCATG
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.32
Consensus pattern (38 bp):
CAATTCAACACTAGCAGTAGTCATGCTTAACATGTATT
Found at i:33008966 original size:5 final size:5
Alignment explanation
Indices: 33008948--33008994 Score: 53
Period size: 5 Copynumber: 9.6 Consensus size: 5
33008938 AATAAATAAG
* *
33008948 TATTA TATTA -ATTA TATTA TTATAA TATTA TATTA TTTTA TA-TA TAT
1 TATTA TATTA TATTA TATTA -TATTA TATTA TATTA TATTA TATTA TAT
33008995 AAAAAACAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
4 8 0.23
5 23 0.66
6 4 0.11
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:33008971 original size:8 final size:8
Alignment explanation
Indices: 33008948--33008984 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
33008938 AATAAATAAG
33008948 TATTATAT
1 TATTATAT
33008956 TAATTATAT
1 T-ATTATAT
*
33008965 TATTATAA
1 TATTATAT
33008973 TATTATAT
1 TATTATAT
33008981 TATT
1 TATT
33008985 TTATATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
8 18 0.69
9 8 0.31
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TATTATAT
Found at i:33009963 original size:25 final size:25
Alignment explanation
Indices: 33009935--33010021 Score: 147
Period size: 25 Copynumber: 3.5 Consensus size: 25
33009925 ACTTTAGCGC
33009935 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGATTATTAGCACGTTGGT
33009960 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGATTATTAGCACGTTGGT
* **
33009985 GCTCTCTGATTACTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACGTTGGT
33010010 GCTCTCTGATTA
1 GCTCTCTGATTA
33010022 GCACATCTGT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACGTTGGT
Found at i:33010012 original size:50 final size:48
Alignment explanation
Indices: 33009935--33010069 Score: 154
Period size: 50 Copynumber: 2.8 Consensus size: 48
33009925 ACTTTAGCGC
** *
33009935 GCTCTCTGATTATTAGCACGTTGGTGCTCTCTGATTATTAGCACGT-TGGT
1 GCTCTCTGATTA-TAGCACGTCAGTGCTCTCTG-TTATTAGCACATCT-GT
33009985 GCTCTCTGATTACTAGCACGTCAGTGCTCTCTG--ATTAGCACATCTGT
1 GCTCTCTGATTA-TAGCACGTCAGTGCTCTCTGTTATTAGCACATCTGT
*
33010032 GCTCTCTG--TATAGCACTTCAGTGCTCTCTGTTCATTAG
1 GCTCTCTGATTATAGCACGTCAGTGCTCTCTGTT-ATTAG
33010070 TGCATAATAA
Statistics
Matches: 76, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
44 19 0.25
45 2 0.03
47 24 0.32
48 1 0.01
50 30 0.39
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (48 bp):
GCTCTCTGATTATAGCACGTCAGTGCTCTCTGTTATTAGCACATCTGT
Found at i:33010033 original size:22 final size:23
Alignment explanation
Indices: 33009935--33010061 Score: 105
Period size: 25 Copynumber: 5.3 Consensus size: 23
33009925 ACTTTAGCGC
* **
33009935 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGA-TA-TAGCACATCAGT
* **
33009960 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGA-TA-TAGCACATCAGT
*
33009985 GCTCTCTGATTACTAGCACGTCAGT
1 GCTCTCTGA-TA-TAGCACATCAGT
*
33010010 GCTCTCTGAT-TAGCACATCTGT
1 GCTCTCTGATATAGCACATCAGT
*
33010032 GCTCTCTG-TATAGCACTTCAGT
1 GCTCTCTGATATAGCACATCAGT
33010054 GCTCTCTG
1 GCTCTCTG
33010062 TTCATTAGTG
Statistics
Matches: 94, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
21 1 0.01
22 36 0.38
24 1 0.01
25 56 0.60
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (23 bp):
GCTCTCTGATATAGCACATCAGT
Found at i:33010062 original size:22 final size:23
Alignment explanation
Indices: 33009983--33010062 Score: 92
Period size: 22 Copynumber: 3.5 Consensus size: 23
33009973 TAGCACGTTG
*
33009983 GTGCTCTCTGATTACTAGCACGTCA
1 GTGCTCTCTG--TACTAGCACATCA
* *
33010008 GTGCTCTCTG-ATTAGCACATCT
1 GTGCTCTCTGTACTAGCACATCA
*
33010030 GTGCTCTCTGTA-TAGCACTTCA
1 GTGCTCTCTGTACTAGCACATCA
33010052 GTGCTCTCTGT
1 GTGCTCTCTGT
33010063 TCATTAGTGC
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
22 38 0.78
23 1 0.02
25 10 0.20
ACGTcount: A:0.16, C:0.28, G:0.20, T:0.36
Consensus pattern (23 bp):
GTGCTCTCTGTACTAGCACATCA
Found at i:33010188 original size:31 final size:31
Alignment explanation
Indices: 33010153--33010211 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
33010143 AAGAATATGA
* *
33010153 GATAGTGAATTGAAAATAGAATGTGAAAAAC
1 GATAGTGAATTGAAAACAGAATATGAAAAAC
33010184 GATAGTGAATTGAAAACAGAATATGAAA
1 GATAGTGAATTGAAAACAGAATATGAAA
33010212 TATGTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.53, C:0.03, G:0.22, T:0.22
Consensus pattern (31 bp):
GATAGTGAATTGAAAACAGAATATGAAAAAC
Found at i:33011321 original size:23 final size:24
Alignment explanation
Indices: 33011283--33011335 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
33011273 TTATTGGATT
*
33011283 AAATTATTAAATTAAAATT-ATTTA
1 AAATTATTAAATT-AAATTAAATTA
33011307 AAATTATTAAA-TAAATTAAATTA
1 AAATTATTAAATTAAATTAAATTA
33011330 AAATTA
1 AAATTA
33011336 AAGAATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 5 0.19
23 11 0.41
24 11 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
AAATTATTAAATTAAATTAAATTA
Found at i:33011392 original size:23 final size:23
Alignment explanation
Indices: 33011357--33011401 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
33011347 GGGTCAGTCG
* *
33011357 AAAAAATGTATGTTAATTAATCC
1 AAAAAAGGCATGTTAATTAATCC
33011380 AAAAAAGGCATGTTAATTAATC
1 AAAAAAGGCATGTTAATTAATC
33011402 AAAGGTCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (23 bp):
AAAAAAGGCATGTTAATTAATCC
Found at i:33014965 original size:5 final size:6
Alignment explanation
Indices: 33014950--33014974 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
33014940 TATGATATAT
33014950 TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA T
33014975 ATAGTTTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:33015823 original size:16 final size:18
Alignment explanation
Indices: 33015792--33015824 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
33015782 CTCTTATTTA
33015792 AAAATGATATAAAATATG
1 AAAATGATATAAAATATG
33015810 AAAA-GATA-AAAATAT
1 AAAATGATATAAAATAT
33015825 CATCATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (18 bp):
AAAATGATATAAAATATG
Found at i:33016118 original size:22 final size:23
Alignment explanation
Indices: 33016066--33016119 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
33016056 TTTTATTTAG
*
33016066 ATATTTT-ATAATTTATAAAATT
1 ATATTTTAATAATTGATAAAATT
* **
33016088 TTAAATTAATAA-TGATAAAATT
1 ATATTTTAATAATTGATAAAATT
33016110 ATATTTTAAT
1 ATATTTTAAT
33016120 CCCTCAAAAA
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
ATATTTTAATAATTGATAAAATT
Found at i:33018401 original size:17 final size:17
Alignment explanation
Indices: 33018357--33018404 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
33018347 TATTAAAAAA
* *
33018357 ATATTTTTTACAATTTT
1 ATATTTTTAATAATTTT
33018374 ATATTTTTAATAATTTT
1 ATATTTTTAATAATTTT
33018391 -TA-TTTT-ATAATTTT
1 ATATTTTTAATAATTTT
33018405 TAAAAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 8 0.28
15 4 0.14
16 2 0.07
17 15 0.52
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (17 bp):
ATATTTTTAATAATTTT
Found at i:33018402 original size:14 final size:15
Alignment explanation
Indices: 33018361--33018406 Score: 58
Period size: 14 Copynumber: 3.0 Consensus size: 15
33018351 AAAAAAATAT
*
33018361 TTTTTACAATTTTATA
1 TTTTTATAATTTT-TA
33018377 TTTTTAATAATTTTTA
1 TTTTT-ATAATTTTTA
33018393 -TTTTATAATTTTTA
1 TTTTTATAATTTTTA
33018407 AAAATTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 10 0.36
15 4 0.14
16 7 0.25
17 7 0.25
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTTTA
Found at i:33018412 original size:24 final size:24
Alignment explanation
Indices: 33018369--33018438 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 24
33018359 ATTTTTTACA
*
33018369 ATTTTAT-ATTTTTAATAATTTTT
1 ATTTTATAATTTTTAAAAATTTTT
*
33018392 ATTTTATAATTTTTAAAAATTATAT
1 ATTTTATAATTTTTAAAAATT-TTT
* * *
33018417 ATATTA-ATTTTTTTAAAATTTT
1 ATTTTATAATTTTTAAAAATTTT
33018439 AAAAATTAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
23 8 0.21
24 24 0.62
25 7 0.18
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
ATTTTATAATTTTTAAAAATTTTT
Found at i:33018446 original size:24 final size:24
Alignment explanation
Indices: 33018401--33018449 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
33018391 TATTTTATAA
* *
33018401 TTTTTAAAAATTATATATATTAAT
1 TTTTTAAAAATTATAAAAATTAAT
* *
33018425 TTTTTTAAAATTTTAAAAATTAAT
1 TTTTTAAAAATTATAAAAATTAAT
33018449 T
1 T
33018450 AATTATTGAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TTTTTAAAAATTATAAAAATTAAT
Found at i:33019905 original size:9 final size:9
Alignment explanation
Indices: 33019893--33020033 Score: 116
Period size: 9 Copynumber: 16.2 Consensus size: 9
33019883 TATTTTTTAT
33019893 TTTTTCTTC
1 TTTTTCTTC
33019902 -TTTT-TTC
1 TTTTTCTTC
*
33019909 CTTTT-TTC
1 TTTTTCTTC
*
33019917 TTTTTTTTC
1 TTTTTCTTC
*
33019926 TTTCTTC-CC
1 TTT-TTCTTC
33019935 TTTCTTCTTC
1 TTT-TTCTTC
*
33019945 TTCTTCTTC
1 TTTTTCTTC
*
33019954 TTCTTCTTC
1 TTTTTCTTC
33019963 TTTTTCTTC
1 TTTTTCTTC
33019972 ---TTCTTC
1 TTTTTCTTC
*
33019978 TTCTTCTTC
1 TTTTTCTTC
*
33019987 TTCTTCTTC
1 TTTTTCTTC
* *
33019996 TTCTTCATC
1 TTTTTCTTC
*
33020005 TTCTTCTTC
1 TTTTTCTTC
33020014 TTTTTCTTC
1 TTTTTCTTC
*
33020023 TTCTTCTTC
1 TTTTTCTTC
33020032 TT
1 TT
33020034 CCTCCTCCTC
Statistics
Matches: 115, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
6 6 0.05
7 3 0.03
8 15 0.13
9 86 0.75
10 5 0.04
ACGTcount: A:0.01, C:0.28, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTCTTC
Found at i:33019942 original size:3 final size:3
Alignment explanation
Indices: 33019936--33020034 Score: 171
Period size: 3 Copynumber: 33.0 Consensus size: 3
33019926 TTTCTTCCCT
*
33019936 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* *
33019984 TTC TTC TTC TTC TTC TTC ATC TTC TTC TTC TTT TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
33020032 TTC
1 TTC
33020035 CTCCTCCTCA
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 90 1.00
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:33021208 original size:72 final size:75
Alignment explanation
Indices: 33021004--33021227 Score: 339
Period size: 72 Copynumber: 3.0 Consensus size: 75
33020994 TGTTTGTTTT
33021004 TTTTTGAAAAATACAAATTG-AAAGATACCTCGGCATGTGCCCCGAGGCTCAACTCACCTCTCGC
1 TTTTTGAAAAATACAAATTGAAAAG-TACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCGC
33021068 ATTATGAGTTGA
64 ATTATGAGTTGA
* * * * *
33021080 TTTTTGAAAAAATAGAAATCGAAAAGTACCTCGGCATGTGCCCGAGACTCAACTCACCCCTTGCA
1 TTTTTG-AAAAATACAAATTGAAAAGTACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCA
*
33021145 TTTTGAGTTGA
65 TTATGAGTTGA
33021156 TTTTTG-AAAA-A-AAATTGAAAAGTACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAT
1 TTTTTGAAAAATACAAATTGAAAAGTACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAT
33021218 TATGAGTTGA
66 TATGAGTTGA
33021228 ANNNNNNNNN
Statistics
Matches: 135, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
72 56 0.41
73 1 0.01
74 4 0.03
76 44 0.33
77 26 0.19
78 4 0.03
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (75 bp):
TTTTTGAAAAATACAAATTGAAAAGTACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAT
TATGAGTTGA
Found at i:33028186 original size:18 final size:18
Alignment explanation
Indices: 33028163--33028201 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
33028153 CCTGAGATGT
33028163 TTTTTTATTTTTTTCTTC
1 TTTTTTATTTTTTTCTTC
* *
33028181 TTTTTTCTTTTTTTTTTC
1 TTTTTTATTTTTTTCTTC
33028199 TTT
1 TTT
33028202 ATTCCATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (18 bp):
TTTTTTATTTTTTTCTTC
Found at i:33028194 original size:21 final size:20
Alignment explanation
Indices: 33028162--33028200 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
33028152 ACCTGAGATG
33028162 TTTTTTTATTTTTTTCTTCT
1 TTTTTTTATTTTTTTCTTCT
*
33028182 TTTTTCTTTTTTTTTTCTT
1 TTTTT-TTATTTTTTTCTT
33028201 TATTCCATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (20 bp):
TTTTTTTATTTTTTTCTTCT
Found at i:33028419 original size:33 final size:34
Alignment explanation
Indices: 33028382--33028446 Score: 98
Period size: 33 Copynumber: 1.9 Consensus size: 34
33028372 TTTGTCGAAG
33028382 TTTTTCTCTCTTTTTT-TGGATT-TTGCTTGCTGT
1 TTTTTCTCTCTTTTTTGT-GATTCTTGCTTGCTGT
*
33028415 TTTTTTTCTCTTTTTTGTGATTCTTGCTTGCT
1 TTTTTCTCTCTTTTTTGTGATTCTTGCTTGCT
33028447 TTGCTAGGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 19 0.66
34 10 0.34
ACGTcount: A:0.03, C:0.15, G:0.14, T:0.68
Consensus pattern (34 bp):
TTTTTCTCTCTTTTTTGTGATTCTTGCTTGCTGT
Found at i:33028479 original size:14 final size:14
Alignment explanation
Indices: 33028460--33028497 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
33028450 CTAGGTGTTG
33028460 GCGATGGTGGTGCT
1 GCGATGGTGGTGCT
33028474 GCGATGGTGGTGCT
1 GCGATGGTGGTGCT
33028488 GCGATGGTGG
1 GCGATGGTGG
33028498 GCAAGGTGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.08, C:0.13, G:0.53, T:0.26
Consensus pattern (14 bp):
GCGATGGTGGTGCT
Found at i:33028976 original size:6 final size:6
Alignment explanation
Indices: 33028967--33029007 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
33028957 AGAGAAGCAT
*
33028967 AAAAAC -AAAAC -AAAAC -AAAAC AAAAAC AAAAAA AAAAAC AA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AA
33029008 TAATGGGCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 15 0.47
6 17 0.53
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:33028978 original size:5 final size:5
Alignment explanation
Indices: 33028968--33029001 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
33028958 GAGAAGCATA
33028968 AAAAC AAAAC AAAAC AAAAC AAAAAC AAAA- AAAA
1 AAAAC AAAAC AAAAC AAAAC -AAAAC AAAAC AAAA
33029002 AAACAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.14
5 19 0.68
6 5 0.18
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:33029262 original size:12 final size:11
Alignment explanation
Indices: 33029235--33029260 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
33029225 TATTTTTAAA
33029235 TTTTAAAATAT
1 TTTTAAAATAT
33029246 TTTTAAAATAT
1 TTTTAAAATAT
33029257 TTTT
1 TTTT
33029261 TATTTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:33029264 original size:18 final size:17
Alignment explanation
Indices: 33029217--33029267 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
33029207 TAATAAATAT
33029217 ATATTTTTTATTTTTAA
1 ATATTTTTTATTTTTAA
**
33029234 AT-TTTAAAATATTTTTAAA
1 ATATTT--TTTATTTTT-AA
33029253 ATATTTTTTATTTTT
1 ATATTTTTTATTTTT
33029268 TTATTTTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
16 3 0.12
17 2 0.08
18 14 0.54
19 4 0.15
20 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATATTTTTTATTTTTAA
Found at i:33035327 original size:23 final size:21
Alignment explanation
Indices: 33035273--33035327 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
33035263 AGGAGGAAGT
* *
33035273 ATTGGCAGTTTATCTACAAAC
1 ATTGGTAGTTTATCCACAAAC
*
33035294 ATTGGTGGTTTATCCACAAAC
1 ATTGGTAGTTTATCCACAAAC
33035315 ATACTGGTAGTTT
1 AT--TGGTAGTTT
33035328 TTATTTGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 20 0.71
23 8 0.29
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (21 bp):
ATTGGTAGTTTATCCACAAAC
Found at i:33035444 original size:91 final size:88
Alignment explanation
Indices: 33035289--33035585 Score: 319
Period size: 91 Copynumber: 3.3 Consensus size: 88
33035279 AGTTTATCTA
* * *
33035289 CAAACATTGGTGGTTTATCCACAAACATACTGGTAGTTTTTATTTGCAAACACGTTGTGCATTCA
1 CAAACACTGGTGGTTTATCCACAAACATACT-GCA-ATTTT-TTTGCAAACACGTTGTGCATTCA
* *
33035354 CAACCTACTAGTAGCGTATTAACTTG
63 CAACCTACTAGCAGCGTATTAACCTG
* * * *
33035380 CAAACACTGGTGGTTTATCCAGAAACGTACTGACAACTTTTTTCTGCAGATACGTTGTGCATTCA
1 CAAACACTGGTGGTTTATCCACAAACATACTG-CAA-TTTTTT-TGCAAACACGTTGTGCATTCA
** *
33035445 CAACCTACTAGCAATGTATTAACCTA
63 CAACCTACTAGCAGCGTATTAACCTG
* * * ** * *
33035471 AAAACATTGGTGGTTTAACCACAAATTTACTGGCATATTTTATTTGCAAACCCGTTGTGTATTCA
1 CAAACACTGGTGGTTTATCCACAAACATACT-GCA-ATTTT-TTTGCAAACACGTTGTGCATTCA
33035536 CAA-CTACTAGCAGCGTATTAACCTG
63 CAACCTACTAGCAGCGTATTAACCTG
*
33035561 CAAA-ACTGGTGGTTCATCCACAAAC
1 CAAACACTGGTGGTTTATCCACAAAC
33035586 TGGAGTGTTT
Statistics
Matches: 170, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
89 17 0.10
90 25 0.15
91 124 0.73
92 4 0.02
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (88 bp):
CAAACACTGGTGGTTTATCCACAAACATACTGCAATTTTTTTGCAAACACGTTGTGCATTCACAA
CCTACTAGCAGCGTATTAACCTG
Found at i:33039892 original size:24 final size:24
Alignment explanation
Indices: 33039865--33039912 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
33039855 CAGTATTGGC
* * *
33039865 TTTGAGATGCTTATTTAAGAAAAG
1 TTTGAAATGCTCATTCAAGAAAAG
33039889 TTTGAAATGCTCATTCAAGAAAAG
1 TTTGAAATGCTCATTCAAGAAAAG
33039913 GTACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (24 bp):
TTTGAAATGCTCATTCAAGAAAAG
Found at i:33041570 original size:13 final size:13
Alignment explanation
Indices: 33041549--33041610 Score: 70
Period size: 13 Copynumber: 4.8 Consensus size: 13
33041539 TTTGGTAATA
33041549 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
*
33041562 CTTTCGAAAAGTG
1 CTTTTGAAAAGTG
** * *
33041575 CGGTGGAAAAATG
1 CTTTTGAAAAGTG
*
33041588 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
33041601 CTTTTGAAAA
1 CTTTTGAAAA
33041611 ATTTGAGTGT
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.32
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:33043379 original size:27 final size:26
Alignment explanation
Indices: 33043335--33043398 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
33043325 TAATGGACAC
*
33043335 ATAAATAAATAAATAAATAATAACGAT
1 ATAAA-AAATAAATAAATAATAAAGAT
* *
33043362 A-AAGAAAATGAATAAAATTATAAAGAT
1 ATAA-AAAATAAAT-AAATAATAAAGAT
33043389 ATAAAAAATA
1 ATAAAAAATA
33043399 TATATGTATG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
26 9 0.30
27 19 0.63
28 2 0.07
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (26 bp):
ATAAAAAATAAATAAATAATAAAGAT
Found at i:33046093 original size:72 final size:72
Alignment explanation
Indices: 33045969--33046207 Score: 385
Period size: 72 Copynumber: 3.3 Consensus size: 72
33045959 AAAATCATAT
** *
33045969 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGCAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
33046032 TACCAAAC
65 AACCAAAC
*
33046040 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
33046105 ACCAAAC
66 ACCAAAC
33046112 ATAAACAA-TCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACT-ATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
33046176 AACCAAAC
65 AACCAAAC
*
33046184 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
33046208 TTTAGCATTG
Statistics
Matches: 157, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
71 26 0.17
72 130 0.83
73 1 0.01
ACGTcount: A:0.55, C:0.15, G:0.05, T:0.24
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:33048998 original size:18 final size:17
Alignment explanation
Indices: 33048966--33049000 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
33048956 GTTATGATTT
*
33048966 TATTTTAAAAAAATATA
1 TATTTAAAAAAAATATA
33048983 TATTTAAAATAAAATATA
1 TATTTAAAA-AAAATATA
33049001 CCTTTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TATTTAAAAAAAATATA
Found at i:33052649 original size:24 final size:24
Alignment explanation
Indices: 33052622--33052672 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
33052612 ATACGGAGAC
*
33052622 GAAGACGAGGGTGGAGAAGAAGAT
1 GAAGACGAGGGTCGAGAAGAAGAT
* * *
33052646 GAAGAGGATGGTCGAGATGAAGAT
1 GAAGACGAGGGTCGAGAAGAAGAT
33052670 GAA
1 GAA
33052673 TACAGGGGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.41, C:0.04, G:0.43, T:0.12
Consensus pattern (24 bp):
GAAGACGAGGGTCGAGAAGAAGAT
Found at i:33054973 original size:16 final size:17
Alignment explanation
Indices: 33054952--33054984 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
33054942 CGTGGCAATT
33054952 TTAAAA-ATAGAAAAAA
1 TTAAAACATAGAAAAAA
33054968 TTAAAACATAGAAAAAA
1 TTAAAACATAGAAAAAA
33054985 ATTCATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.18
Consensus pattern (17 bp):
TTAAAACATAGAAAAAA
Found at i:33055512 original size:12 final size:12
Alignment explanation
Indices: 33055495--33055532 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
33055485 TACATGTGGA
33055495 AAATAATAAAAT
1 AAATAATAAAAT
*
33055507 AAATAATAAATT
1 AAATAATAAAAT
33055519 AAATTAA-AAAAT
1 AAA-TAATAAAAT
33055531 AA
1 AA
33055533 CTCTTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 20 0.87
13 3 0.13
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
AAATAATAAAAT
Found at i:33056580 original size:21 final size:21
Alignment explanation
Indices: 33056533--33056580 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
33056523 CACACGGGTG
* * **
33056533 GCCACACGGGCGTGTGCCTTG
1 GCCACACGGCCGTGTCCCTCA
*
33056554 GACACACGGCCGTGTCCCTCA
1 GCCACACGGCCGTGTCCCTCA
33056575 GCCACA
1 GCCACA
33056581 GGAGCGTATG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.17, C:0.40, G:0.29, T:0.15
Consensus pattern (21 bp):
GCCACACGGCCGTGTCCCTCA
Found at i:33059470 original size:3 final size:3
Alignment explanation
Indices: 33059456--33059486 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
33059446 ACCAGCCCAT
33059456 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
33059487 ATAAATAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:33060021 original size:2 final size:2
Alignment explanation
Indices: 33060014--33060122 Score: 218
Period size: 2 Copynumber: 54.5 Consensus size: 2
33060004 CAAATCATTA
33060014 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33060056 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33060098 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
33060123 ACTACGTACC
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 107 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33067710 original size:23 final size:23
Alignment explanation
Indices: 33067679--33067729 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
33067669 CCCTACTTTC
* *
33067679 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
*
33067702 TTACAGTAGTAATTTTTGGGATA
1 TTACAGTAGTAATTTTCGGGATA
33067725 TTACA
1 TTACA
33067730 TGTTCCCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:33073291 original size:22 final size:24
Alignment explanation
Indices: 33073256--33073301 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
33073246 TTTAGAATTT
33073256 AATTTTTATAC-TTTTA-TTTTTA
1 AATTTTTATACTTTTTACTTTTTA
33073278 AATTTTTA-ATCTTTTTACTTTTTA
1 AATTTTTATA-CTTTTTACTTTTTA
33073302 GTTAGAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 1 0.05
22 9 0.43
23 5 0.24
24 6 0.29
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (24 bp):
AATTTTTATACTTTTTACTTTTTA
Done.