Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 118 of 168
Found at i:34353281 original size:19 final size:19
Alignment explanation
Indices: 34353257--34353331 Score: 68
Period size: 19 Copynumber: 4.0 Consensus size: 19
34353247 TTATGTGTGA
34353257 ATATGTGAATTGTGAATTG
1 ATATGTGAATTGTGAATTG
*
34353276 ATATGTGAATTG-GAAATCG
1 ATATGTGAATTGTG-AATTG
* *
34353295 AGATATGAGATT-TGAA--G
1 ATATGTGA-ATTGTGAATTG
34353312 ATATGTGAATATGTGAATTG
1 ATATGTGAAT-TGTGAATTG
34353332 TGTATTGATT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
16 2 0.05
17 8 0.18
18 5 0.11
19 24 0.55
20 5 0.11
ACGTcount: A:0.36, C:0.01, G:0.27, T:0.36
Consensus pattern (19 bp):
ATATGTGAATTGTGAATTG
Found at i:34361772 original size:22 final size:22
Alignment explanation
Indices: 34361719--34361761 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
34361709 TTTATTGTTC
34361719 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTG
34361741 AAACATGAGAGCTTAGTACGT
1 AAACATGAGAGCTTAGTACGT
34361762 TAGCCATGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTG
Found at i:34362670 original size:15 final size:14
Alignment explanation
Indices: 34362630--34362658 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
34362620 TTTTTGTATC
34362630 AATTTAATTATTCT
1 AATTTAATTATTCT
34362644 AATTTAATTATTCT
1 AATTTAATTATTCT
34362658 A
1 A
34362659 GTTTTAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (14 bp):
AATTTAATTATTCT
Found at i:34366106 original size:27 final size:27
Alignment explanation
Indices: 34366076--34366156 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
34366066 TGGTTGGTAG
*
34366076 GACTGGTGCCGCCAACCTGGTTCCCTC
1 GACTGGTGCCGCCAACCTGCTTCCCTC
*
34366103 GACTGGTGCCGCCAACCTGCTTCCCTT
1 GACTGGTGCCGCCAACCTGCTTCCCTC
** **
34366130 GTTTGGTGCCGCCAACCTATTTCCCTC
1 GACTGGTGCCGCCAACCTGCTTCCCTC
34366157 CACCCAGGGA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.11, C:0.40, G:0.22, T:0.27
Consensus pattern (27 bp):
GACTGGTGCCGCCAACCTGCTTCCCTC
Found at i:34385989 original size:18 final size:17
Alignment explanation
Indices: 34385957--34385994 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
34385947 ATTTTATTAA
34385957 ATATTTTTATAAATTTAC
1 ATATTTTTATAAATTT-C
34385975 ATATTTTTA-ATAATTTC
1 ATATTTTTATA-AATTTC
34385992 ATA
1 ATA
34385995 AGAGTTAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (17 bp):
ATATTTTTATAAATTTC
Found at i:34386639 original size:15 final size:16
Alignment explanation
Indices: 34386619--34386655 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
34386609 TTTGTTTAAG
34386619 TTATA-TATATAAATA
1 TTATAGTATATAAATA
34386634 TTATATGTATATAAATA
1 TTATA-GTATATAAATA
34386651 TTATA
1 TTATA
34386656 ATTATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 5 0.25
17 15 0.75
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
TTATAGTATATAAATA
Found at i:34387802 original size:39 final size:40
Alignment explanation
Indices: 34387759--34387846 Score: 108
Period size: 39 Copynumber: 2.2 Consensus size: 40
34387749 CGAGTTATGG
* * *
34387759 AATACTGGATATTGTTTTG-ATTACTG-AGTGAATTGTGAA
1 AATACTGAATATTGTTATGTA-TAATGCAGTGAATTGTGAA
*
34387798 AATACTGAATATTGTTATGTATAATGCATTGAATTGTGAA
1 AATACTGAATATTGTTATGTATAATGCAGTGAATTGTGAA
*
34387838 ATTACTGAA
1 AATACTGAA
34387847 GTAAAGAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 21 0.50
40 21 0.50
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.40
Consensus pattern (40 bp):
AATACTGAATATTGTTATGTATAATGCAGTGAATTGTGAA
Found at i:34388062 original size:38 final size:39
Alignment explanation
Indices: 34388020--34388102 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 39
34388010 ATTTGCCGGC
* * *
34388020 TTACTGA-TCAGGCAC-TTATGTGCCGACTGCTGTTACTG
1 TTACTGATTC-GGCACTTTATGTGCCGAATACTGTTACCG
* *
34388058 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACCG
1 TTACTGATTCGGCACTTTATGTGCCGAATACTGTTACCG
34388097 TTACTG
1 TTACTG
34388103 TTACAGATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
38 12 0.32
39 26 0.68
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (39 bp):
TTACTGATTCGGCACTTTATGTGCCGAATACTGTTACCG
Found at i:34388118 original size:45 final size:45
Alignment explanation
Indices: 34388051--34388151 Score: 166
Period size: 45 Copynumber: 2.2 Consensus size: 45
34388041 GCCGACTGCT
* *
34388051 GTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACC
1 GTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGTTACC
* *
34388096 GTTACTGTTACAGATTCAGCACTTTGTGTGTTGAATACTGTTACT
1 GTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGTTACC
34388141 GTTACTGTTAC
1 GTTACTGTTAC
34388152 TTTTACCGTT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.42
Consensus pattern (45 bp):
GTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGTTACC
Found at i:34388142 original size:6 final size:6
Alignment explanation
Indices: 34388131--34388179 Score: 62
Period size: 6 Copynumber: 7.8 Consensus size: 6
34388121 GTGTGTTGAA
* *
34388131 TACTGT TACTGT TACTGT TACTTT TACCGT TACTGAT TACTGT ATACTG
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTGT -TACTG
34388180 GTGTGTTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
6 26 0.70
7 11 0.30
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:34388331 original size:2 final size:2
Alignment explanation
Indices: 34388324--34388349 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
34388314 GAATGATAAT
34388324 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
34388350 ATTGATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:34388898 original size:12 final size:13
Alignment explanation
Indices: 34388874--34388899 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34388864 AATGTTGCCG
34388874 AAATTTAAAAAAA
1 AAATTTAAAAAAA
34388887 AAATTTAAAAAAA
1 AAATTTAAAAAAA
34388900 TGAATGAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAATTTAAAAAAA
Found at i:34391116 original size:27 final size:27
Alignment explanation
Indices: 34391076--34391127 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
34391066 AGGCAATGTC
*
34391076 TGGTCGAGGCGGTGGTGGACGTGGCAG
1 TGGTCGAGGCGGTGGTCGACGTGGCAG
* *
34391103 TGGTCGGGGTGGTGGTCGACGTGGC
1 TGGTCGAGGCGGTGGTCGACGTGGC
34391128 CGGGGGCAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.08, C:0.15, G:0.56, T:0.21
Consensus pattern (27 bp):
TGGTCGAGGCGGTGGTCGACGTGGCAG
Found at i:34391548 original size:21 final size:21
Alignment explanation
Indices: 34391522--34391566 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
34391512 GATGTTGCTA
*
34391522 ATGCCGATCTTTATCACTACG
1 ATGCCGATCTTCATCACTACG
34391543 ATGCCGATCTTCATCACTACG
1 ATGCCGATCTTCATCACTACG
34391564 ATG
1 ATG
34391567 TAACTTTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (21 bp):
ATGCCGATCTTCATCACTACG
Found at i:34397080 original size:18 final size:17
Alignment explanation
Indices: 34397059--34397092 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
34397049 CATTAAATAA
*
34397059 TTTTATTAATTTACATAT
1 TTTTAATAATTT-CATAT
34397077 TTTTAATAATTTCATA
1 TTTTAATAATTTCATA
34397093 AAAGTGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTAATAATTTCATAT
Found at i:34398209 original size:26 final size:28
Alignment explanation
Indices: 34398154--34398215 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 28
34398144 TCTATTTACC
34398154 AAATATTTCATAAATTTAAAAAAATAAAG
1 AAATATTTCAT-AATTTAAAAAAATAAAG
* *
34398183 AAATATTTCAT-GTTTTAAAAAA-AAAG
1 AAATATTTCATAATTTAAAAAAATAAAG
34398209 AAATATT
1 AAATATT
34398216 ACCAAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 11 0.35
27 9 0.29
29 11 0.35
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (28 bp):
AAATATTTCATAATTTAAAAAAATAAAG
Found at i:34403153 original size:9 final size:9
Alignment explanation
Indices: 34403139--34403310 Score: 75
Period size: 9 Copynumber: 18.4 Consensus size: 9
34403129 ATACAAAAAT
34403139 AAAAATATA
1 AAAAATATA
34403148 AAAAATAT-
1 AAAAATATA
* * *
34403156 TAAACTTTAA
1 AAAAATAT-A
34403166 TAAAAATATA
1 -AAAAATATA
34403176 AAAAATAT-
1 AAAAATATA
* * *
34403184 TAAACTTTAA
1 AAAAATAT-A
34403194 TAAAAATATA
1 -AAAAATATA
*
34403204 AAAAATATT
1 AAAAATATA
* *
34403213 TAAAATTTA
1 AAAAATATA
34403222 CTAAAAAT-TA
1 --AAAAATATA
34403232 AAAAAGTAT-
1 AAAAA-TATA
*
34403241 AAAAATCTTA
1 AAAAAT-ATA
34403251 AAAAATATTA
1 AAAAATA-TA
*
34403261 AAAAATGT-
1 AAAAATATA
* *
34403269 AAAATTTTA
1 AAAAATATA
34403278 TAAAAATAATA
1 -AAAAAT-ATA
34403289 AAAAATATA
1 AAAAATATA
* *
34403298 AAATACATA
1 AAAAATATA
34403307 AAAA
1 AAAA
34403311 GGGTTTTTTA
Statistics
Matches: 120, Mismatches: 27, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
8 22 0.18
9 51 0.43
10 30 0.25
11 17 0.14
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (9 bp):
AAAAATATA
Found at i:34403179 original size:29 final size:28
Alignment explanation
Indices: 34403136--34403301 Score: 198
Period size: 28 Copynumber: 5.9 Consensus size: 28
34403126 GTTATACAAA
*
34403136 AATAAAAATATAAAAAATATTAAACTTT
1 AATAAAAATATAAAAAATATTAAAATTT
*
34403164 AATAAAAATATAAAAAATATTAAACTTT
1 AATAAAAATATAAAAAATATTAAAATTT
34403192 AATAAAAATATAAAAAATATTTAAAATTT
1 AATAAAAATATAAAAAATA-TTAAAATTT
* *
34403221 ACTAAAAAT-TAAAAAAGTATAAAAATCTT
1 AATAAAAATATAAAAAA-TATTAAAAT-TT
*
34403250 -A-AAAAATATTAAAAAAT-GTAAAATTT
1 AATAAAAATA-TAAAAAATATTAAAATTT
*
34403276 TATAAAAATAATAAAAAATA-TAAAAT
1 AATAAAAAT-ATAAAAAATATTAAAAT
34403302 ACATAAAAAG
Statistics
Matches: 123, Mismatches: 6, Indels: 18
0.84 0.04 0.12
Matches are distributed among these distances:
26 2 0.02
27 12 0.10
28 81 0.66
29 28 0.23
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (28 bp):
AATAAAAATATAAAAAATATTAAAATTT
Found at i:34403310 original size:28 final size:28
Alignment explanation
Indices: 34403230--34403310 Score: 85
Period size: 28 Copynumber: 2.9 Consensus size: 28
34403220 TACTAAAAAT
*
34403230 TAAAAAAGTATAAAA-ATCTTAAAAAATAT
1 TAAAAAA-TATAAAATA-CTTAAAAAATAA
* *
34403259 TAAAAAATGTAAAAT-TTTATAAAAATAA
1 TAAAAAATATAAAATACTTA-AAAAATAA
*
34403287 TAAAAAATATAAAATACATAAAAA
1 TAAAAAATATAAAATACTTAAAAA
34403311 GGGTTTTTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
27 3 0.07
28 31 0.72
29 9 0.21
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (28 bp):
TAAAAAATATAAAATACTTAAAAAATAA
Found at i:34403519 original size:20 final size:20
Alignment explanation
Indices: 34403496--34403559 Score: 71
Period size: 19 Copynumber: 3.3 Consensus size: 20
34403486 TTGGTATGAT
34403496 AATTTTTATATTTTTTTACG
1 AATTTTTATATTTTTTTACG
*
34403516 AA-TTTTATATTTCTTTAC-
1 AATTTTTATATTTTTTTACG
* *
34403534 ATTTTTTATCATTTTCTTACG
1 AATTTTTAT-ATTTTTTTACG
34403555 -ATTTT
1 AATTTT
34403560 ATAAAATTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
18 1 0.03
19 21 0.58
20 14 0.39
ACGTcount: A:0.23, C:0.09, G:0.03, T:0.64
Consensus pattern (20 bp):
AATTTTTATATTTTTTTACG
Found at i:34403577 original size:19 final size:19
Alignment explanation
Indices: 34403555--34403602 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
34403545 TTTTCTTACG
34403555 ATTTTATAAAATTATATAT
1 ATTTTATAAAATTATATAT
* * * *
34403574 ATTTTCTATATTTCTATAT
1 ATTTTATAAAATTATATAT
34403593 ATTTTTATAA
1 A-TTTTATAA
34403603 GTTTATTTTA
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTTTATAAAATTATATAT
Found at i:34406371 original size:3 final size:3
Alignment explanation
Indices: 34406363--34406407 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
34406353 CCTATTAAAA
34406363 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
34406408 CATGAAATAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:34407086 original size:95 final size:95
Alignment explanation
Indices: 34406910--34407093 Score: 323
Period size: 96 Copynumber: 1.9 Consensus size: 95
34406900 GTAATCTATA
*
34406910 CCGAAAATATTAAACATGTCCATTCATTTTGAAACCTTTTTTTAGATAATTACGTTTATCTTTAA
1 CCGAAAATATTAAACATCTCCATTCATTTTGAAACCTTTTTTTAGATAATTACGTTTATCTTTAA
34406975 ATTAAGAGTTATTTTTTTAACTTATTATTG
66 ATTAAGAGTTATTTTTTTAACTTATTATTG
* * *
34407005 CCGAAAATATTAAACATCTGCATTCATTTTGAAACTTTTTTTTTAGATAATTATGTTTATCTTTA
1 CCGAAAATATTAAACATCTCCATTCATTTTGAAAC-CTTTTTTTAGATAATTACGTTTATCTTTA
34407070 AATTAAGAGTTATTTTTTTAACTT
65 AATTAAGAGTTATTTTTTTAACTT
34407094 CATGAATTAT
Statistics
Matches: 84, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
95 33 0.39
96 51 0.61
ACGTcount: A:0.33, C:0.11, G:0.08, T:0.48
Consensus pattern (95 bp):
CCGAAAATATTAAACATCTCCATTCATTTTGAAACCTTTTTTTAGATAATTACGTTTATCTTTAA
ATTAAGAGTTATTTTTTTAACTTATTATTG
Found at i:34408778 original size:27 final size:27
Alignment explanation
Indices: 34408710--34408780 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
34408700 AAGTACCCTA
* **
34408710 ATAGGTTAAAATGACCGAAATACCCCC
1 ATAGGGTAAAATGATTGAAATACCCCC
* *
34408737 ATAGAGTAGAATGATTGAAATACCCCC
1 ATAGGGTAAAATGATTGAAATACCCCC
34408764 ATAGGGTAAAATGATTG
1 ATAGGGTAAAATGATTG
34408781 TTATACCCTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.23
Consensus pattern (27 bp):
ATAGGGTAAAATGATTGAAATACCCCC
Found at i:34409214 original size:29 final size:32
Alignment explanation
Indices: 34409179--34409238 Score: 90
Period size: 29 Copynumber: 2.0 Consensus size: 32
34409169 TATCTGCACT
*
34409179 GATTAATGATA-TA-GTACTGTT-ACTGCATC
1 GATTAATGATATTACATACTGTTCACTGCATC
34409208 GATTAATGATATTACATACTGTTCACTGCAT
1 GATTAATGATATTACATACTGTTCACTGCAT
34409239 GACTAATATC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 11 0.41
30 2 0.07
31 7 0.26
32 7 0.26
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (32 bp):
GATTAATGATATTACATACTGTTCACTGCATC
Found at i:34411003 original size:60 final size:61
Alignment explanation
Indices: 34410908--34411028 Score: 190
Period size: 60 Copynumber: 2.0 Consensus size: 61
34410898 TTAGTCGAGG
* * **
34410908 GTAAAAATGTAATCGTACTTTATATCTTAAAATGTATTAATGACCATATATTTATAATTTT
1 GTAAAAATATAATCGTACTTAATATCTTAAAATGTATTAACAACCATATATTTATAATTTT
*
34410969 GTAAAAATATAATCGT-CTTAATATCTTAAAATGTATTAACAATCATATATTTATAATTTT
1 GTAAAAATATAATCGTACTTAATATCTTAAAATGTATTAACAACCATATATTTATAATTTT
34411029 CAATTACATT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
60 40 0.73
61 15 0.27
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (61 bp):
GTAAAAATATAATCGTACTTAATATCTTAAAATGTATTAACAACCATATATTTATAATTTT
Found at i:34414718 original size:114 final size:113
Alignment explanation
Indices: 34414532--34415087 Score: 519
Period size: 114 Copynumber: 4.9 Consensus size: 113
34414522 TAATCATTCC
* * * *
34414532 CGGCGTTT-TTGAGAAAGCGCCGCAAAAAACCT-AGCGCAACGACGCCGTTTCCCCAGCATTC-G
1 CGGCGTTTCTTG-GAAAGCGCCGCAAAAAAACTAAGCGCAACGACGTCGTTTCCCGAGCTTTCAG
*
34414594 GTGATTTAGCGGCGTTTTTCAGTAAGCGTCGCTAATGCTCAAGGCTTTAG
65 G-GATTTAGCGGCGTTTTTCAGTAAGCGCCGCTAATGCTCAAGGCTTTAG
* * * *
34414644 CGGCGTTTCTAGGAAAGCGCTGCAAAAATAACTAAGCTCAACGATGTCGTTTCCCGAGCTTTCAG
1 CGGCGTTTCTTGGAAAGCGCCGCAAAAA-AACTAAGCGCAACGACGTCGTTTCCCGAGCTTTCAG
* * *
34414709 GGATTTAGCGGCG-CTTTCTA-TAAAGCGCCGCTAATGGT-TAGGTCTTTAG
65 GGATTTAGCGGCGTTTTTC-AGT-AAGCGCCGCTAATGCTCAAGG-CTTTAG
* ** *
34414758 CAGCGTTTC-TGGAAAAGCGCCGCTACGTAAAACT-AGCGCAACGACGTCGTCTCCCGAGCTTTC
1 CGGCGTTTCTTGG-AAAGCGCCGC-A-AAAAAACTAAGCGCAACGACGTCGTTTCCCGAGCTTTC
* * * *
34414821 AGGGATTTAGCGGCGCTTTTACAGAAAGCGCCGCTAATGCTGAAGTCTTTAG
63 AGGGATTTAGCGGCG-TTTTTCAGTAAGCGCCGCTAATGCTCAAGGCTTTAG
* * * * * *
34414873 CGGCGTTT-TTGTTAAAGCGCCGCAAAAAAATCTAAGCCCAACGACGCCGTTTTCTG-GCTTTCG
1 CGGCGTTTCTTG-GAAAGCGCCGCAAAAAAA-CTAAGCGCAACGACGTCGTTTCCCGAGCTTTCA
* * *
34414936 GGGATTTTAGCGGCGTTTTT--GTTAAAGCGCTGCTAATGTTC-AGTCTTTAG
64 GGGA-TTTAGCGGCGTTTTTCAG-T-AAGCGCCGCTAATGCTCAAGGCTTTAG
* * * * * * *
34414986 AGGCGTTTTTTGGAAAGCGCCGCAAAAAAAACTAAGCGCAACGTCGTCGTTTTCTGTGCTTTTGA
1 CGGCGTTTCTTGGAAAGCGCCGC-AAAAAAACTAAGCGCAACGACGTCGTTTCCCGAGC-TTTCA
*
34415051 GGGATTTAGCGGCGTTTTT-AGAAAAGCGCCGCTAATG
64 GGGATTTAGCGGCGTTTTTCAG-TAAGCGCCGCTAATG
34415088 ATCAGGATTT
Statistics
Matches: 367, Mismatches: 51, Indels: 50
0.78 0.11 0.11
Matches are distributed among these distances:
112 24 0.07
113 67 0.18
114 186 0.51
115 83 0.23
116 7 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (113 bp):
CGGCGTTTCTTGGAAAGCGCCGCAAAAAAACTAAGCGCAACGACGTCGTTTCCCGAGCTTTCAGG
GATTTAGCGGCGTTTTTCAGTAAGCGCCGCTAATGCTCAAGGCTTTAG
Found at i:34414964 original size:229 final size:226
Alignment explanation
Indices: 34414533--34415087 Score: 610
Period size: 229 Copynumber: 2.4 Consensus size: 226
34414523 AATCATTCCC
* * * *
34414533 GGCGTTTT-TGAGAAAGCGCCGC-AAAAAACCTAGCGCAACGACGCCGTTTCCCCAGCATTC-GG
1 GGCGTTTTCTG-GAAAGCGCCGCAAAAAAAACTAGCGCAACGACGTCGTTTCCCGAGCTTTCAGG
* * *
34414595 TGATTTAGCGGCGTTTTTCAGTAAGCGTCGCTAATGCTCAAGGCTTTAGCGGCGTTTCTAGGAAA
65 -GATTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTCTAGGAAA
* * * *
34414660 GCGCTGCAAAAATAACTAAGCTCAACGATGTCGTTTCCCGAGCTTTCAGGGATTTAGCGGCGCTT
129 GCGCCGCAAAAATAACTAAGCCCAACGACGCCGTTTCCCGAGCTTTCAGGGATTTAGCGGCGCTT
34414725 TCTATAAAGCGCCGCTAATGGTT-AGGTCTTTAGCA
194 TCTATAAAGCGCCGCTAAT-GTTCA-GTCTTTAG-A
*** *
34414760 -GCG-TTTCTGGAAAAGCGCCGCTACGTAAAACTAGCGCAACGACGTCGTCTCCCGAGCTTTCAG
1 GGCGTTTTCTGG-AAAGCGCCGC-AAAAAAAACTAGCGCAACGACGTCGTTTCCCGAGCTTTCAG
* * * *
34414823 GGATTTAGCGGCGCTTTTACAGAAAGCGCCGCTAATGCTGAAGTCTTTAGCGGCGTTT-TTGTTA
64 GGATTTAGCGGCG-TTTTACAGAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTCTAG-GA
* * *
34414887 AAGCGCCGCAAAAA-AATCTAAGCCCAACGACGCCGTTTTCTG-GCTTTCGGGGATTTTAGCGGC
127 AAGCGCCGCAAAAATAA-CTAAGCCCAACGACGCCGTTTCCCGAGCTTTCAGGGA-TTTAGCGGC
* * *
34414950 G-TTTTTGTTAAAGCGCTGCTAATGTTCAGTCTTTAGA
190 GCTTTCT-ATAAAGCGCCGCTAATGTTCAGTCTTTAGA
* * * * * *
34414987 GGCGTTTTTTGGAAAGCGCCGCAAAAAAAACTAAGCGCAACGTCGTCGTTTTCTGTGCTTTTGAG
1 GGCGTTTTCTGGAAAGCGCCGCAAAAAAAACT-AGCGCAACGACGTCGTTTCCCGAGC-TTTCAG
*
34415052 GGATTTAGCGGCGTTTT-TAGAAAAGCGCCGCTAATG
64 GGATTTAGCGGCGTTTTACAG-AAAGCGCCGCTAATG
34415088 ATCAGGATTT
Statistics
Matches: 276, Mismatches: 36, Indels: 31
0.80 0.10 0.09
Matches are distributed among these distances:
225 4 0.01
226 15 0.05
227 10 0.04
228 123 0.45
229 124 0.45
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (226 bp):
GGCGTTTTCTGGAAAGCGCCGCAAAAAAAACTAGCGCAACGACGTCGTTTCCCGAGCTTTCAGGG
ATTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTCTAGGAAAGC
GCCGCAAAAATAACTAAGCCCAACGACGCCGTTTCCCGAGCTTTCAGGGATTTAGCGGCGCTTTC
TATAAAGCGCCGCTAATGTTCAGTCTTTAGA
Found at i:34415798 original size:31 final size:32
Alignment explanation
Indices: 34415755--34415839 Score: 91
Period size: 31 Copynumber: 2.6 Consensus size: 32
34415745 AATAAAATTT
* *
34415755 TTTAGGGGTTATGGTTTAGGGGTTAGAGGAG-
1 TTTAGGGTTTATGGTTTAGGGGTTAAAGGAGA
* * *
34415786 TTTAGGGTTTATGCTTTAAGGGTTAAAGGGGA
1 TTTAGGGTTTATGGTTTAGGGGTTAAAGGAGA
*
34415818 TTTAGGGGTTATATGGGTTAGG
1 TTTA-GGGTT-TATGGTTTAGG
34415840 AATTTGGGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
31 26 0.60
32 4 0.09
33 5 0.12
34 8 0.19
ACGTcount: A:0.21, C:0.01, G:0.40, T:0.38
Consensus pattern (32 bp):
TTTAGGGTTTATGGTTTAGGGGTTAAAGGAGA
Found at i:34416676 original size:39 final size:39
Alignment explanation
Indices: 34416622--34416711 Score: 130
Period size: 39 Copynumber: 2.3 Consensus size: 39
34416612 TAATTGGAAT
*
34416622 GGTTTAGGGGTTATGCTTT-AGGGGTTAGGGAGATTTAGG
1 GGTTTATGGGTTATGCTTTAAGGGGTTAGGG-GATTTAGG
* *
34416661 GGTTTATGGTTTATGCTTTAAGGGTTTAGGGGATTTAGG
1 GGTTTATGGGTTATGCTTTAAGGGGTTAGGGGATTTAGG
34416700 GG-TTATGGGTTA
1 GGTTTATGGGTTA
34416712 GGAATTTGGG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
38 9 0.20
39 27 0.59
40 10 0.22
ACGTcount: A:0.18, C:0.02, G:0.40, T:0.40
Consensus pattern (39 bp):
GGTTTATGGGTTATGCTTTAAGGGGTTAGGGGATTTAGG
Found at i:34419807 original size:22 final size:23
Alignment explanation
Indices: 34419782--34419844 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
34419772 AATAAAATTA
34419782 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTAGAATAT
*
34419804 TATTAATAATTA-TATTAGTAATGT
1 TATTAA-AATTATTATTAG-AATAT
34419828 TATT-AAATTATATATTA
1 TATTAAAATTAT-TATTA
34419845 TTTTATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
22 16 0.46
23 6 0.17
24 13 0.37
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (23 bp):
TATTAAAATTATTATTAGAATAT
Found at i:34419843 original size:12 final size:11
Alignment explanation
Indices: 34419776--34419856 Score: 50
Period size: 12 Copynumber: 7.5 Consensus size: 11
34419766 CTTAATAATA
34419776 AAATTA-TATT
1 AAATTATTATT
34419786 AAAATTATTATT
1 -AAATTATTATT
34419798 AAA-TATTATT
1 AAATTATTATT
34419808 AATAATTA-TATT
1 -A-AATTATTATT
*
34419820 AGTAA-TGTTATT
1 A--AATTATTATT
34419832 AAATTATATATT
1 AAATTAT-TATT
34419844 --ATT-TTATT
1 AAATTATTATT
34419852 AAATT
1 AAATT
34419857 GTACTTAACA
Statistics
Matches: 58, Mismatches: 2, Indels: 21
0.72 0.02 0.26
Matches are distributed among these distances:
8 4 0.07
9 1 0.02
10 15 0.26
11 14 0.24
12 22 0.38
13 2 0.03
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (11 bp):
AAATTATTATT
Found at i:34420013 original size:9 final size:9
Alignment explanation
Indices: 34419979--34420321 Score: 182
Period size: 9 Copynumber: 39.7 Consensus size: 9
34419969 AACAACTCAA
34419979 AACTTACAT
1 AACTTACAT
* *
34419988 AACCTAAAT
1 AACTTACAT
*
34419997 AACCTACAT
1 AACTTACAT
34420006 AACTTACAT
1 AACTTACAT
*
34420015 AA--TACAA
1 AACTTACAT
*
34420022 AACTCACAT
1 AACTTACAT
*
34420031 AACTTAAAT
1 AACTTACAT
** *
34420040 CTCTTACAC
1 AACTTACAT
34420049 AACTTACAT
1 AACTTACAT
34420058 AACCTT-CAT
1 AA-CTTACAT
34420067 AA--TACATTT
1 AACTTACA--T
34420076 AACTTACAT
1 AACTTACAT
34420085 AACTTACAT
1 AACTTACAT
*
34420094 AATACATA-AT
1 -A-ACTTACAT
34420104 AACTTAC--
1 AACTTACAT
34420111 AACTTACAT
1 AACTTACAT
34420120 AA--TACATTT
1 AACTTACA--T
34420129 AACTTAC--
1 AACTTACAT
34420136 AACTTACAT
1 AACTTACAT
34420145 AA--TACATTT
1 AACTTACA--T
34420154 AACTTACAT
1 AACTTACAT
*
34420163 AACTTACGT
1 AACTTACAT
* *
34420172 AA-TCCATCTT
1 AACT-TA-CAT
34420182 AACTTACAT
1 AACTTACAT
*
34420191 AATACATA-AT
1 -A-ACTTACAT
34420201 AACTTAC--
1 AACTTACAT
34420208 AACTTACAT
1 AACTTACAT
*
34420217 AACATACAT
1 AACTTACAT
* **
34420226 TACTTTGAT
1 AACTTACAT
34420235 AACTTACAT
1 AACTTACAT
34420244 AAC-T---T
1 AACTTACAT
34420249 -ACTTACAT
1 AACTTACAT
34420257 AACTTACAT
1 AACTTACAT
34420266 AACTTACAT
1 AACTTACAT
*
34420275 AACTAACAT
1 AACTTACAT
* *
34420284 TA--TACAC
1 AACTTACAT
34420291 AACTTACAT
1 AACTTACAT
34420300 AA--TACAT
1 AACTTACAT
*
34420307 TACTTACAT
1 AACTTACAT
34420316 AACTTA
1 AACTTA
34420322 AAGCATAATA
Statistics
Matches: 253, Mismatches: 41, Indels: 80
0.68 0.11 0.21
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
6 1 0.00
7 47 0.19
8 11 0.04
9 156 0.62
10 14 0.06
11 20 0.08
ACGTcount: A:0.45, C:0.22, G:0.01, T:0.33
Consensus pattern (9 bp):
AACTTACAT
Found at i:34420031 original size:43 final size:43
Alignment explanation
Indices: 34419976--34420059 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
34419966 CTGAACAACT
* *
34419976 CAAAACTTACATAACCTAAATAACCTACATAACTTACATAATA
1 CAAAACTCACATAACCTAAATAACCTACACAACTTACATAATA
* ** *
34420019 CAAAACTCACATAACTTAAATCTCTTACACAACTTACATAA
1 CAAAACTCACATAACCTAAATAACCTACACAACTTACATAA
34420060 CCTTCATAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.26
Consensus pattern (43 bp):
CAAAACTCACATAACCTAAATAACCTACACAACTTACATAATA
Found at i:34420107 original size:19 final size:19
Alignment explanation
Indices: 34420083--34420208 Score: 64
Period size: 19 Copynumber: 6.5 Consensus size: 19
34420073 TTTAACTTAC
34420083 ATAACTTACATAATACATA
1 ATAACTTACATAATACATA
*
34420102 ATAACTTACA-ACTTACATA
1 ATAACTTACATA-ATACATA
* * *
34420121 ATACATTTAACTTACA-ACTTA
1 ATA-ACTT-ACATA-ATACATA
* *
34420142 CATAA--TACAT-TTAACTTA
1 -ATAACTTACATAAT-ACATA
* * *
34420160 CATAACTTACGTAATCCATC
1 -ATAACTTACATAATACATA
*
34420180 TTAACTTACATAATACATA
1 ATAACTTACATAATACATA
34420199 ATAACTTACA
1 ATAACTTACA
34420209 ACTTACATAA
Statistics
Matches: 80, Mismatches: 17, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
18 14 0.17
19 44 0.55
20 9 0.11
21 8 0.10
22 5 0.06
ACGTcount: A:0.45, C:0.20, G:0.01, T:0.34
Consensus pattern (19 bp):
ATAACTTACATAATACATA
Found at i:34420161 original size:78 final size:75
Alignment explanation
Indices: 34420064--34420321 Score: 255
Period size: 78 Copynumber: 3.3 Consensus size: 75
34420054 ACATAACCTT
34420064 CATAATACATTTAACTTACATAACTTACATAATACATAATAACTTACAACTTACATAATACATTT
1 CATAATACA-TT-ACTTACATAACTTACATAATAC-TAATAACTTACAACTTACATAATACATTT
34420129 AACTTACAACTTA
63 AACTTACAACTTA
* * *
34420142 CATAATACATTTAACTTACATAACTTACGTAAT-C-CAT--CTT--AACTTACATAATACATAAT
1 CATAATACA-TT-ACTTACATAACTTACATAATACTAATAACTTACAACTTACATAATACAT-TT
34420201 AACTTACAACTTA
63 AACTTACAACTTA
**
34420214 CATAACATACATTACTTTGATAACTTACATAACTTACTTACATAACTTACATAACTTACATAACT
1 CAT-A-ATACATTACTTACATAACTTACATAA--TAC-TA-ATAACTTAC--AACTTACATAA-T
34420279 AACA-TTATAC--ACAACTTA
57 -ACATTTA-ACTTACAACTTA
34420297 CATAATACATTACTTACATAACTTA
1 CATAATACATTACTTACATAACTTA
34420322 AAGCATAATA
Statistics
Matches: 152, Mismatches: 10, Indels: 33
0.78 0.05 0.17
Matches are distributed among these distances:
71 16 0.11
72 33 0.22
73 6 0.04
74 6 0.04
75 3 0.02
77 1 0.01
78 34 0.22
80 3 0.02
81 19 0.12
82 1 0.01
83 11 0.07
84 13 0.09
85 3 0.02
86 3 0.02
ACGTcount: A:0.44, C:0.21, G:0.01, T:0.34
Consensus pattern (75 bp):
CATAATACATTACTTACATAACTTACATAATACTAATAACTTACAACTTACATAATACATTTAAC
TTACAACTTA
Found at i:34420252 original size:13 final size:13
Alignment explanation
Indices: 34420236--34420263 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34420226 TACTTTGATA
34420236 ACTTACATAACTT
1 ACTTACATAACTT
34420249 ACTTACATAACTT
1 ACTTACATAACTT
34420262 AC
1 AC
34420264 ATAACTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.25, G:0.00, T:0.36
Consensus pattern (13 bp):
ACTTACATAACTT
Found at i:34428063 original size:18 final size:18
Alignment explanation
Indices: 34428037--34428071 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
34428027 AAACACTCGT
*
34428037 ACGTATTCATGTTTATAC
1 ACGTATTCATGCTTATAC
*
34428055 ACGTGTTCATGCTTATA
1 ACGTATTCATGCTTATA
34428072 ATATAATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (18 bp):
ACGTATTCATGCTTATAC
Found at i:34431061 original size:23 final size:23
Alignment explanation
Indices: 34431035--34431082 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
34431025 AAATAGAATA
34431035 TGGCTTTGAGATCAGCATAGTAC
1 TGGCTTTGAGATCAGCATAGTAC
34431058 TGGCTTTGAGATCAGCATAGTAC
1 TGGCTTTGAGATCAGCATAGTAC
34431081 TG
1 TG
34431083 AGCTATCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (23 bp):
TGGCTTTGAGATCAGCATAGTAC
Found at i:34432756 original size:3 final size:3
Alignment explanation
Indices: 34432748--34432811 Score: 85
Period size: 3 Copynumber: 21.3 Consensus size: 3
34432738 AAGCTATTAT
* * *
34432748 ATA ATA ATA AT- ATG ATA AGTA ACA ATG ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA
34432793 ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A
34432812 AATTACTAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
2 2 0.04
3 49 0.91
4 3 0.06
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:34438110 original size:40 final size:40
Alignment explanation
Indices: 34438050--34438130 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
34438040 AGAATTTGTT
* *
34438050 TGCTCTAAAGCCTTGTCCATCTTGTCTATGGGAAGCATGC
1 TGCTCTAAAACCTTGACCATCTTGTCTATGGGAAGCATGC
* *
34438090 TGCTCTAAAACTTTGACCATCTTGTCTATGTGAAGCATGC
1 TGCTCTAAAACCTTGACCATCTTGTCTATGGGAAGCATGC
34438130 T
1 T
34438131 TCTTTTAAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (40 bp):
TGCTCTAAAACCTTGACCATCTTGTCTATGGGAAGCATGC
Found at i:34442459 original size:59 final size:59
Alignment explanation
Indices: 34442393--34442542 Score: 182
Period size: 59 Copynumber: 2.5 Consensus size: 59
34442383 TATTTTTAAA
* * *
34442393 AAAATATTACTCAATTACATAAATTACTATAAT-TTT-T-GTGATATTTTGTGTAATTACAT
1 AAAATATTACTCAATTACATAAATTACTACAATATTTATAGTG-T-TTTT-TATAAATACAT
* *
34442452 AAAATATTACTAAATTACATAAATTATTACAATATTTATAGTGTTTTTTATAAATACAT
1 AAAATATTACTCAATTACATAAATTACTACAATATTTATAGTGTTTTTTATAAATACAT
*
34442511 AAAATATTA-TCTAATTACACAAATTACTACAA
1 AAAATATTACTC-AATTACATAAATTACTACAA
34442543 ATCTAATATT
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
58 1 0.01
59 66 0.84
60 7 0.09
61 2 0.03
62 3 0.04
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.42
Consensus pattern (59 bp):
AAAATATTACTCAATTACATAAATTACTACAATATTTATAGTGTTTTTTATAAATACAT
Found at i:34442469 original size:20 final size:20
Alignment explanation
Indices: 34442444--34442481 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
34442434 TATTTTGTGT
34442444 AATTACATAAAATATTACTA
1 AATTACATAAAATATTACTA
*
34442464 AATTACATAAATTATTAC
1 AATTACATAAAATATTAC
34442482 AATATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTACATAAAATATTACTA
Found at i:34442892 original size:11 final size:11
Alignment explanation
Indices: 34442878--34442925 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
34442868 TTTCTTGCTA
34442878 TTTTTTACTAT
1 TTTTTTACTAT
*
34442889 TTTTTTGCTAT
1 TTTTTTACTAT
* **
34442900 TTTCTTGTTAT
1 TTTTTTACTAT
34442911 TTTTTTCACTAT
1 TTTTTT-ACTAT
34442923 TTT
1 TTT
34442926 GCTACCATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 24 0.80
12 6 0.20
ACGTcount: A:0.12, C:0.10, G:0.04, T:0.73
Consensus pattern (11 bp):
TTTTTTACTAT
Found at i:34442896 original size:21 final size:22
Alignment explanation
Indices: 34442866--34442925 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
34442856 AAACTATTAT
34442866 TTTTTCTTGCTATTTT-TTACTA
1 TTTTT-TTGCTATTTTCTTACTA
**
34442888 TTTTTTTGCTATTTTCTTGTTA
1 TTTTTTTGCTATTTTCTTACTA
*
34442910 TTTTTTTCACTATTTT
1 TTTTTTT-GCTATTTT
34442926 GCTACCATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.30
22 16 0.48
23 7 0.21
ACGTcount: A:0.12, C:0.12, G:0.05, T:0.72
Consensus pattern (22 bp):
TTTTTTTGCTATTTTCTTACTA
Found at i:34442914 original size:23 final size:22
Alignment explanation
Indices: 34442860--34442925 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
34442850 AAAAAAAAAC
34442860 TATTATTTTTTCTTGCTATTTTT
1 TATTATTTTTT-TTGCTATTTTT
*
34442883 TACTA-TTTTTTTGCTATTTTCT
1 TATTATTTTTTTTGCTATTTT-T
* **
34442905 TGTTATTTTTTTCACTATTTT
1 TATTATTTTTTTTGCTATTTT
34442926 GCTACCATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 10 0.28
22 9 0.25
23 17 0.47
ACGTcount: A:0.14, C:0.11, G:0.05, T:0.71
Consensus pattern (22 bp):
TATTATTTTTTTTGCTATTTTT
Found at i:34445218 original size:26 final size:25
Alignment explanation
Indices: 34445189--34445286 Score: 74
Period size: 26 Copynumber: 3.7 Consensus size: 25
34445179 TATCAAAAAT
34445189 AATAAAAGAAATAATAAAATAGTGAA
1 AATAAAAGAAATAATAAAATA-TGAA
* * *
34445215 AATAATAGAAAAAATTAAATAT-AA
1 AATAAAAGAAATAATAAAATATGAA
*
34445239 AATAATAACGATTATAATAAAA-ATGCACA
1 AATAA-AA-GA-AATAATAAAATATG-A-A
34445268 AATAAAAGAATATGAATAA
1 AATAAAAGAA-AT-AATAA
34445287 TCTATTTTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
24 7 0.12
25 2 0.04
26 22 0.39
27 11 0.20
28 8 0.14
29 6 0.11
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.22
Consensus pattern (25 bp):
AATAAAAGAAATAATAAAATATGAA
Found at i:34446341 original size:3 final size:3
Alignment explanation
Indices: 34446333--34446367 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
34446323 AATTTTGATT
34446333 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
34446368 TGGTTTTGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:34447028 original size:13 final size:13
Alignment explanation
Indices: 34447007--34447094 Score: 99
Period size: 13 Copynumber: 6.7 Consensus size: 13
34446997 TTCGGTTATG
34447007 TTGTTTTAATATA
1 TTGTTTTAATATA
*
34447020 GTT-TTTTAATAAA
1 -TTGTTTTAATATA
34447033 TTGTTTTAATATA
1 TTGTTTTAATATA
*
34447046 TTGTTATAATATA
1 TTGTTTTAATATA
*
34447059 CTT-TTATAATTATA
1 -TTGTTTTAA-TATA
34447073 TTGTTTTAATATA
1 TTGTTTTAATATA
*
34447086 ATGTTTTAA
1 TTGTTTTAA
34447095 CTTTTAAATT
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
12 2 0.03
13 50 0.77
14 13 0.20
ACGTcount: A:0.34, C:0.01, G:0.07, T:0.58
Consensus pattern (13 bp):
TTGTTTTAATATA
Found at i:34447083 original size:40 final size:39
Alignment explanation
Indices: 34447007--34447090 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 39
34446997 TTCGGTTATG
* * *
34447007 TTGTTTTAATATAGTTTTTTAATAAATTGTTTTAATATA
1 TTGTTATAATATACTTTTATAATAAATTGTTTTAATATA
*
34447046 TTGTTATAATATACTTTTATAATTATATTGTTTTAATATA
1 TTGTTATAATATACTTTTATAA-TAAATTGTTTTAATATA
*
34447086 ATGTT
1 TTGTT
34447091 TTAACTTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.33, C:0.01, G:0.07, T:0.58
Consensus pattern (39 bp):
TTGTTATAATATACTTTTATAATAAATTGTTTTAATATA
Found at i:34447284 original size:16 final size:16
Alignment explanation
Indices: 34447263--34447294 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
34447253 ATTTTTAATG
34447263 TAATATACTGTTTTAA
1 TAATATACTGTTTTAA
34447279 TAATATACTGTTTTAA
1 TAATATACTGTTTTAA
34447295 AATTTATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (16 bp):
TAATATACTGTTTTAA
Found at i:34448421 original size:115 final size:112
Alignment explanation
Indices: 34448225--34448446 Score: 345
Period size: 115 Copynumber: 2.0 Consensus size: 112
34448215 TAAAAATCAC
* **
34448225 AAAACCCCCAAAAACTTTTGATTTTTTTTGGTTTCGAAAACCCTAAAAATCACCAAACCCTCTAC
1 AAAAACCCCAAAAACTTTCAATTTTTTTTGGTTTCGAAAACCCTAAAAATCACCAAACCCTCTAC
* *
34448290 CCACGGCGGCGAAGTACAAACTTTCAGTGAGTTTTTTTGAAAATCGT
66 CCACGGCGGCGAAGTACAAACGTTCAGTAAGTTTTTTTGAAAATCGT
*
34448337 AAAAACCCCAAAAACTTTCAATTTTGTTTTTGGGTTTTGAAAACCCTAAAAATCACCAAACCCTC
1 AAAAACCCCAAAAACTTTCAA-TTT-TTTTT-GGTTTCGAAAACCCTAAAAATCACCAAACCCTC
* *
34448402 TACCCACGGCGGTGGAGTACAAACGTTCAGTAAGTTTTTTTGAAA
63 TACCCACGGCGGCGAAGTACAAACGTTCAGTAAGTTTTTTTGAAA
34448447 CCTTTCTCTC
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
112 18 0.18
113 3 0.03
114 5 0.05
115 73 0.74
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (112 bp):
AAAAACCCCAAAAACTTTCAATTTTTTTTGGTTTCGAAAACCCTAAAAATCACCAAACCCTCTAC
CCACGGCGGCGAAGTACAAACGTTCAGTAAGTTTTTTTGAAAATCGT
Found at i:34449218 original size:10 final size:10
Alignment explanation
Indices: 34449188--34449220 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
34449178 GCCCAATACC
34449188 TTAAACCCAAA
1 TTAAACCC-AA
34449199 TT-AACCCAA
1 TTAAACCCAA
34449208 TTAAACCCAA
1 TTAAACCCAA
34449218 TTA
1 TTA
34449221 TATTGGCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 4 0.19
10 15 0.71
11 2 0.10
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.24
Consensus pattern (10 bp):
TTAAACCCAA
Found at i:34451323 original size:10 final size:10
Alignment explanation
Indices: 34451294--34451342 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
34451284 CCAGAGAAAC
34451294 TTTTTATTTTA
1 TTTTT-TTTTA
* *
34451305 GTTTGTTTTA
1 TTTTTTTTTA
34451315 TTTTTTTTTA
1 TTTTTTTTTA
*
34451325 TTTTTTTTTG
1 TTTTTTTTTA
34451335 TTTTTTTT
1 TTTTTTTT
34451343 CATTCGGTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
10 30 0.91
11 3 0.09
ACGTcount: A:0.08, C:0.00, G:0.06, T:0.86
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:34451325 original size:25 final size:24
Alignment explanation
Indices: 34451294--34451342 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
34451284 CCAGAGAAAC
34451294 TTTTTATTTTAGTTTGTTTTATTTT
1 TTTTTATTTTAGTTTGTTTT-TTTT
**
34451319 TTTTTATTTTTTTTTGTTTTTTTT
1 TTTTTATTTTAGTTTGTTTTTTTT
34451343 CATTCGGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.08, C:0.00, G:0.06, T:0.86
Consensus pattern (24 bp):
TTTTTATTTTAGTTTGTTTTTTTT
Found at i:34451818 original size:21 final size:21
Alignment explanation
Indices: 34451775--34451815 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
34451765 ATACCATTGT
* *
34451775 TTATTATTGTTATATTATTTA
1 TTATTATGGTTATATCATTTA
34451796 TTATTATGGTTATTATCATT
1 TTATTATGGTTA-TATCATT
34451816 ATTTCTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (21 bp):
TTATTATGGTTATATCATTTA
Found at i:34464146 original size:132 final size:133
Alignment explanation
Indices: 34463960--34464319 Score: 528
Period size: 132 Copynumber: 2.7 Consensus size: 133
34463950 TCATAGATAC
*
34463960 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTAC
* *
34464025 TGGCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATCGGTAGCG-AGGGGATCGAAT
66 TGGCGTGAAGTAGATCAAAGATAGCAGATCCTATCTTCCTATATCGGTAGCGAAGGGGATCGAAT
34464089 ATA
131 ATA
* * * *
34464092 CAGATCTTGTC-TCCCTATACTGGTGGTGGAA-TAGATCGAAGAAAACATATCTTATCTTCATGT
1 CAGATCTTGCCTTCCC-ATACTGGTGGT-GAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGT
* * * *
34464155 ACTGGTGTGAAGTAGATCAAAGATAGCAGATCCTATCTTTCTATATTGGTAGCGAAGTGGATCGA
64 ACTGGCGTGAAGTAGATCAAAGATAGCAGATCCTATCTTCCTATATCGGTAGCGAAGGGGATCGA
34464220 ATATA
129 ATATA
* * *
34464225 CAAATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTAC
* * *
34464290 TGGCGTGATGTAGATCAGAGATACCAGATC
66 TGGCGTGAAGTAGATCAAAGATAGCAGATC
34464320 TTGCCTTCCC
Statistics
Matches: 201, Mismatches: 22, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
131 4 0.02
132 101 0.50
133 92 0.46
134 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (133 bp):
CAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTAC
TGGCGTGAAGTAGATCAAAGATAGCAGATCCTATCTTCCTATATCGGTAGCGAAGGGGATCGAAT
ATA
Found at i:34464343 original size:133 final size:132
Alignment explanation
Indices: 34463963--34464344 Score: 518
Period size: 133 Copynumber: 2.9 Consensus size: 132
34463953 TAGATACCAG
*
34463963 ATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGG
1 ATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGG
*
34464028 CGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATCGGTAGCG-AGGGGATCGAATATA
66 CGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATAT-GGTAGCGAAGGGGATCGAATATA
*
34464092 CAG
130 CAA
* * * *
34464095 ATCTTGTC-TCCCTATACTGGTGGTGGAA-TAGATCGAAGAAAACATATCTTATCTTCATGTACT
1 ATCTTGCCTTCCC-ATACTGGTGGT-GAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTACT
* * * *
34464158 GGTGTGAAGTAGATCAAAGATAGCAGATCCTATCTTTCTATATTGGTAGCGAAGTGGATCGAATA
64 GGCGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATA-TGGTAGCGAAGGGGATCGAATA
34464223 TACAA
128 TACAA
* *
34464228 ATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACTGG
1 ATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGG
* * * * * * *
34464293 CGTGATGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAG
66 CGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATA-TGGTAGCGAAG
34464345 CAGATCAAAG
Statistics
Matches: 216, Mismatches: 28, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
131 4 0.02
132 97 0.45
133 111 0.51
134 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
ATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGG
CGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATATGGTAGCGAAGGGGATCGAATATAC
AA
Found at i:34464384 original size:89 final size:89
Alignment explanation
Indices: 34463908--34464401 Score: 414
Period size: 89 Copynumber: 5.6 Consensus size: 89
34463898 GAGCAGGTTG
* * * *
34463908 AAAGATAA-CAGATCCTGTCTTCATGTACTGGCTTGAAGTAGATCATAGATACCAGATCTTGCCT
1 AAAGA-AAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCT
34463972 TCCCATACTGGTGGCGAAGCAGATC
65 TCCCATACTGGTGGCGAAGCAGATC
* * * * * * *
34463997 GAAGAAAGCAGATCTTATCTTCATGTACTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTT
1 AAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTT
* * **
34464062 CCTATA-TCGGTAGCG-AGGGGATC
66 CCCATACT-GGTGGCGAAGCAGATC
* * * * * * * * * **
34464085 GAATATA-CAGATCTTGTCTCCCTATACTGGTGGTGGAA-TAGATC-GAAGAAAACATATCTTAT
1 AAAGAAAGCAGATCTTGTCTTCATGTACTGG-CGT-GAAGTAGATCAG-AGATAACAGATCTTGC
*** * *
34464147 CTTCATGTACTGGT-GTGAAGTAGATC
63 CTTCCCATACTGGTGGCGAAGCAGATC
* * * * * * * * *
34464173 AAAGATAGCAGATCCTATCTTTC-TATATTGGTAGCGAAGTGGATC-GA-ATATACAAATCTTGC
1 AAAGAAAGCAGATCTTGTC-TTCATGTACTGG-CGTGAAGTAGATCAGAGATA-ACAGATCTTGC
*
34464235 CTTCCCATACTGGTGGTGAAGCAGATC
63 CTTCCCATACTGGTGGCGAAGCAGATC
* *
34464262 AAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGATGTAGATCAGAGATACCAGATCTTGCCTT
1 AAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTT
34464327 CCCATACTGGTGGCGAAGCAGATC
66 CCCATACTGGTGGCGAAGCAGATC
* * ** *
34464351 AAAGAAAGCAGATCTTGTTTTCATGTACCGGCGTGAAACAGATCAAAGATA
1 AAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATA
34464402 GTAGGTCTTG
Statistics
Matches: 323, Mismatches: 67, Indels: 30
0.77 0.16 0.07
Matches are distributed among these distances:
87 23 0.07
88 88 0.27
89 207 0.64
90 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (89 bp):
AAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTT
CCCATACTGGTGGCGAAGCAGATC
Found at i:34464387 original size:133 final size:132
Alignment explanation
Indices: 34463960--34464399 Score: 490
Period size: 133 Copynumber: 3.3 Consensus size: 132
34463950 TCATAGATAC
* * * *
34463960 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTAC
1 CAGATCTTGTCTTCCTATACTGGTGGTGAAGCAGATCAAAGAAAGCAGATCTTATCTTCATGTAC
* *
34464025 TGGCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATCGGTAGCG-AGGGGATCGAAT
66 TGGCGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATAT-GGTAGCGAAGCGGATCGAAT
34464089 ATA
130 ATA
* * * * *
34464092 CAGATCTTGTCTCCCTATACTGGTGGTGGAA-TAGATCGAAGAAAACATATCTTATCTTCATGTA
1 CAGATCTTGTCTTCCTATACTGGTGGT-GAAGCAGATCAAAGAAAGCAGATCTTATCTTCATGTA
* * * *
34464156 CTGGTGTGAAGTAGATCAAAGATAGCAGATCCTATCTTTCTATATTGGTAGCGAAGTGGATCGAA
65 CTGGCGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATA-TGGTAGCGAAGCGGATCGAA
34464221 TATA
129 TATA
* * * *
34464225 CAAATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGTCTTCCTATACTGGTGGTGAAGCAGATCAAAGAAAGCAGATCTTATCTTCATGTAC
* * * * * * * * * *
34464290 TGGCGTGATGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAG
66 TGGCGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATA-TGGTAGCGAAGCGGATCGAAT
*
34464355 AAA
130 ATA
* * * * * *
34464358 GCAGATCTTGTTTTCATGTACCGG-CGTGAAACAGATCAAAGA
1 -CAGATCTTGTCTTCCTATACTGGTGGTGAAGCAGATCAAAGA
34464400 TAGTAGGTCT
Statistics
Matches: 257, Mismatches: 46, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
132 103 0.40
133 138 0.54
134 16 0.06
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
CAGATCTTGTCTTCCTATACTGGTGGTGAAGCAGATCAAAGAAAGCAGATCTTATCTTCATGTAC
TGGCGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATATGGTAGCGAAGCGGATCGAATA
TA
Found at i:34464430 original size:222 final size:223
Alignment explanation
Indices: 34464092--34464506 Score: 530
Period size: 222 Copynumber: 1.9 Consensus size: 223
34464082 ATCGAATATA
* * * * *
34464092 CAGATCTTGTCTCCCTATACTGGTGGTGGAATAGATCGAAGAAAACATATCTTATCTTCATGTAC
1 CAGATCTTGCCTCCCTATACTGGTGGTCGAACAGATCAAAGAAAACAGATCTTATCTTCATGTAC
* * ** * *
34464157 TGGTGTGAAGTAGATCAAAGATAGCAGATCCTATCTTTCTATATTGGTAGCGAAGTGGATCGAAT
66 CGGCGTGAAACAGATCAAAGATAGCAGATCCTATCTTCCTATATCGGTAGCGAAGTGGATCGAAT
* * * *
34464222 ATACAAATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAG-AAAGCAGATCTTGTCTTCAT
131 ATACAAATCTTACCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAAACAGATCTTGCCTTCAT
34464286 GTACTGGCGTGATGTAGATCAGAGATAC
196 GTACTGGCGTGATGTAGATCAGAGATAC
* * *
34464314 CAGATCTTGCCTTCCC-ATACTGGTGG-CGAAGCAGATCAAAGAAAGCAGATCTTGTTTTCATGT
1 CAGATCTTGCC-TCCCTATACTGGTGGTCGAA-CAGATCAAAGAAAACAGATCTTATCTTCATGT
* * * * *
34464377 ACCGGCGTGAAACAGATCAAAGATAGTAGGTCTTGTCTTCCTATATCGGTAGCGAAGTGGATTGA
64 ACCGGCGTGAAACAGATCAAAGATAGCAGATCCTATCTTCCTATATCGGTAGCGAAGTGGATCGA
* * * * * *
34464442 ATATACAGATTTTATCTTCCCATACTGGTGGCGAAGTAGATCGAGGAAAAACAGATCTTGCCTTC
129 ATATACAAATCTTACCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAAACAGATCTTGCCTTC
34464507 CTATACTGAC
Statistics
Matches: 161, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
221 3 0.02
222 138 0.86
223 20 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (223 bp):
CAGATCTTGCCTCCCTATACTGGTGGTCGAACAGATCAAAGAAAACAGATCTTATCTTCATGTAC
CGGCGTGAAACAGATCAAAGATAGCAGATCCTATCTTCCTATATCGGTAGCGAAGTGGATCGAAT
ATACAAATCTTACCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAAACAGATCTTGCCTTCAT
GTACTGGCGTGATGTAGATCAGAGATAC
Found at i:34465789 original size:5 final size:5
Alignment explanation
Indices: 34465750--34465783 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
34465740 CAGAGAAACT
* *
34465750 TTTTA TTTTA GTTTG TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
34465784 TGTTTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:34466269 original size:21 final size:20
Alignment explanation
Indices: 34466215--34466270 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
34466205 ATATTTATCA
* *
34466215 TTATACCATTATTTATTATTG
1 TTATATCATTA-TTATTATGG
*
34466236 TTATATTATTTATTATTATGG
1 TTATATCA-TTATTATTATGG
34466257 TTATTATCATTATT
1 TTA-TATCATTATT
34466271 TCTATATTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 22 0.76
22 7 0.24
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (20 bp):
TTATATCATTATTATTATGG
Found at i:34466372 original size:25 final size:26
Alignment explanation
Indices: 34466300--34466389 Score: 89
Period size: 26 Copynumber: 3.6 Consensus size: 26
34466290 GGTTTTTACA
*
34466300 ATATATATATATATATGCATTTTTTT
1 ATATATATATATATACGCATTTTTTT
* * * *
34466326 ATGTAT-TA-A-ACACACATATTTTT
1 ATATATATATATATACGCATTTTTTT
34466349 ATATATA-ATATATACGCATTTTTTTT
1 ATATATATATATATACGCA-TTTTTTT
*
34466375 AAATATATATATATA
1 ATATATATATATATA
34466390 TATTTTTAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
23 16 0.33
24 2 0.04
25 7 0.14
26 17 0.35
27 7 0.14
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (26 bp):
ATATATATATATATACGCATTTTTTT
Found at i:34469646 original size:8 final size:8
Alignment explanation
Indices: 34469633--34469657 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
34469623 TAATCTGGAA
34469633 AACCAAAC
1 AACCAAAC
34469641 AACCAAAC
1 AACCAAAC
34469649 AACCAAAC
1 AACCAAAC
34469657 A
1 A
34469658 TCCTTATGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.36, G:0.00, T:0.00
Consensus pattern (8 bp):
AACCAAAC
Found at i:34472772 original size:9 final size:9
Alignment explanation
Indices: 34472758--34472786 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
34472748 TAAACAATTC
34472758 AATAATATA
1 AATAATATA
34472767 AATAATATA
1 AATAATATA
34472776 AATAATATA
1 AATAATATA
34472785 AA
1 AA
34472787 ATGTGAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
AATAATATA
Found at i:34472945 original size:16 final size:16
Alignment explanation
Indices: 34472897--34472954 Score: 62
Period size: 16 Copynumber: 3.3 Consensus size: 16
34472887 AGTAAAGAGT
34472897 GGGAAGTAAAAGTTTAGG
1 GGGAA-TAAAAGTTT-GG
*
34472915 GGGAAAATAAAAAGTTTTG
1 GGG--AAT-AAAAGTTTGG
34472934 GGGAATAAAAGTTTGG
1 GGGAATAAAAGTTTGG
34472950 GGGAA
1 GGGAA
34472955 AGTAAATAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
16 14 0.40
17 3 0.09
18 3 0.09
19 5 0.14
20 10 0.29
ACGTcount: A:0.41, C:0.00, G:0.36, T:0.22
Consensus pattern (16 bp):
GGGAATAAAAGTTTGG
Found at i:34473340 original size:9 final size:9
Alignment explanation
Indices: 34473320--34473356 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
34473310 TATAGTTTGA
*
34473320 TATTCCAAT
1 TATTCGAAT
*
34473329 TATTCGAGT
1 TATTCGAAT
34473338 TATTCGAAT
1 TATTCGAAT
34473347 TATTCGAAT
1 TATTCGAAT
34473356 T
1 T
34473357 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:34473423 original size:9 final size:9
Alignment explanation
Indices: 34473409--34473439 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
34473399 TCGAGTTGAT
34473409 TCGAATAAC
1 TCGAATAAC
34473418 TCGAATAAC
1 TCGAATAAC
34473427 TCGAATAAC
1 TCGAATAAC
34473436 TCGA
1 TCGA
34473440 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.23
Consensus pattern (9 bp):
TCGAATAAC
Found at i:34474370 original size:9 final size:9
Alignment explanation
Indices: 34474353--34474389 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
34474343 TGAGTTTTCG
34474353 AATTCGAAT
1 AATTCGAAT
*
34474362 AACTCGAAT
1 AATTCGAAT
*
34474371 AATTCAAAT
1 AATTCGAAT
34474380 AATTCGAAT
1 AATTCGAAT
34474389 A
1 A
34474390 TTAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:34475054 original size:5 final size:5
Alignment explanation
Indices: 34475044--34475069 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
34475034 CTAGAAAATT
34475044 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
34475070 CGAATGCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:34475374 original size:23 final size:23
Alignment explanation
Indices: 34475343--34475386 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
34475333 ATTTTAAAAA
34475343 TTTTAAAAA-AAAATGAAAATTAT
1 TTTTAAAAATAAAAT-AAAATTAT
*
34475366 TTTTTAAAATAAAATAAAATT
1 TTTTAAAAATAAAATAAAATT
34475387 GATATGTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (23 bp):
TTTTAAAAATAAAATAAAATTAT
Found at i:34477884 original size:2 final size:2
Alignment explanation
Indices: 34477877--34477903 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
34477867 AATTTAGTTT
34477877 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
34477904 TTAAATTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:34478256 original size:46 final size:46
Alignment explanation
Indices: 34478171--34478258 Score: 106
Period size: 46 Copynumber: 1.9 Consensus size: 46
34478161 TTATTTAGTT
* * *
34478171 TGTTTTTTTATATATGTACATGTGTATATATATATTTTTTAACGAA
1 TGTTTTTTTATATATATACATATGGATATATATATTTTTTAACGAA
* * *
34478217 TGTTTTTTTATTTATATATATATGGATATTTAT-TCTTTTTAA
1 TGTTTTTTTATATATATACATATGGATATATATAT-TTTTTAA
34478259 AAAATGCTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
45 1 0.03
46 34 0.97
ACGTcount: A:0.28, C:0.03, G:0.09, T:0.59
Consensus pattern (46 bp):
TGTTTTTTTATATATATACATATGGATATATATATTTTTTAACGAA
Found at i:34479867 original size:21 final size:21
Alignment explanation
Indices: 34479826--34479887 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 21
34479816 GTTAAAATAC
*
34479826 AATCAACTTTTTAA-ATTTTTA
1 AATCAAATTTTTAATA-TTTTA
*
34479847 CATCAAATTTTTAATATTTTA
1 AATCAAATTTTTAATATTTTA
34479868 AATACATAAATTTTTAATAT
1 AAT-C--AAATTTTTAATAT
34479888 GTTCTGGCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 19 0.56
22 2 0.06
24 13 0.38
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (21 bp):
AATCAAATTTTTAATATTTTA
Found at i:34486232 original size:370 final size:371
Alignment explanation
Indices: 34485540--34486234 Score: 1275
Period size: 370 Copynumber: 1.9 Consensus size: 371
34485530 ATATATGTAT
* * *
34485540 CCAAAGATAATATGAAAGAAATTGTATGGAGCATTTACCTAAAAACAACATAAAATAAGTTGTAG
1 CCAAAGATAACATGAAAGAAATTGTAAGGAGCATTTACCTAAAAACAACAAAAAATAAGTTGTAG
34485605 GAAGCCACAAGGAGATGAATTTGATCTAAGGGATATAGAATTGGTATTGCATATTTAGGTTGCAG
66 GAAGCCACAAGGAGATGAATTTGATCTAAGGGATATAGAATTGGTATTGCATATTTAGGTTGCAG
* *
34485670 AATTGTGACTACAAAATCTAAGTTACATAATCTGAGGTTTATGGCTGCAGAATTGATGTTGCATT
131 AATTGTGACTACAAAATCTAAGTTACATAATCTGAGGTTTATGGCTGCAAAATTGAGGTTGCATT
*
34485735 TCATGGTCATAAAATCATTATCACATAATCATCATAGAATTAAGGTTGCAAAATTGTCACCACAA
196 TCATGGTCATAAAATCATTATCACATAATCATCATAGAAATAAGGTTGCAAAATTGTCACCACAA
34485800 AATTTGAGCTACAAAATATGAGTGTTGATGGAACTTTAAGAGACCCAAAAATAACATGAGTATTG
261 AATTTGAGCTACAAAATATGAGTGTTGATGGAACTTTAAGAGACCCAAAAATAACATGAGTATTG
34485865 AAGGAGCTTCAAGAAGCCAAAAAATAAAGGAAGCTTCAAAAAAAAA
326 AAGGAGCTTCAAGAAGCCAAAAAATAAAGGAAGCTTCAAAAAAAAA
*
34485911 CCAAA-ATAACATGAAAGAAATTGTAAGGAGCATTTACCTAAAAACAACAAAAAATAGGTTGTAG
1 CCAAAGATAACATGAAAGAAATTGTAAGGAGCATTTACCTAAAAACAACAAAAAATAAGTTGTAG
* *
34485975 GAAGCCACAAGGAGATGAATTTGATCTAAGGGATATAGAATTGGTATTGTATATTTGGGTTGCAG
66 GAAGCCACAAGGAGATGAATTTGATCTAAGGGATATAGAATTGGTATTGCATATTTAGGTTGCAG
*
34486040 AATTGTGACTACAAACTCTAAGTTACATAATCTGAGGTTTATGGCTGCAAAATTGAGGTTGCATT
131 AATTGTGACTACAAAATCTAAGTTACATAATCTGAGGTTTATGGCTGCAAAATTGAGGTTGCATT
*
34486105 TCATGGTCATAAAATCATTATCACATAATCATCATAGAAATAGGGTTGCAAAATTGTCACCACAA
196 TCATGGTCATAAAATCATTATCACATAATCATCATAGAAATAAGGTTGCAAAATTGTCACCACAA
*
34486170 AATTTGAGCTACAAAATATGAGTGTTGATGGAACTTTAGGAGACCCAAAAATAACATGAGTATTG
261 AATTTGAGCTACAAAATATGAGTGTTGATGGAACTTTAAGAGACCCAAAAATAACATGAGTATTG
34486235 GGCTGCAATT
Statistics
Matches: 312, Mismatches: 12, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
370 307 0.98
371 5 0.02
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (371 bp):
CCAAAGATAACATGAAAGAAATTGTAAGGAGCATTTACCTAAAAACAACAAAAAATAAGTTGTAG
GAAGCCACAAGGAGATGAATTTGATCTAAGGGATATAGAATTGGTATTGCATATTTAGGTTGCAG
AATTGTGACTACAAAATCTAAGTTACATAATCTGAGGTTTATGGCTGCAAAATTGAGGTTGCATT
TCATGGTCATAAAATCATTATCACATAATCATCATAGAAATAAGGTTGCAAAATTGTCACCACAA
AATTTGAGCTACAAAATATGAGTGTTGATGGAACTTTAAGAGACCCAAAAATAACATGAGTATTG
AAGGAGCTTCAAGAAGCCAAAAAATAAAGGAAGCTTCAAAAAAAAA
Found at i:34490308 original size:22 final size:22
Alignment explanation
Indices: 34490283--34490341 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
34490273 AAAAACAAAA
*
34490283 AAAAAAG-AGAAAAGAAAGAAG
1 AAAAAAGAAAAAAAGAAAGAAG
*
34490304 GAAAAAGAAAAAAAGAAAGAAG
1 AAAAAAGAAAAAAAGAAAGAAG
*
34490326 AAAAGAAAAAAAAAAG
1 AAAA-AAGAAAAAAAG
34490342 GAGAGGTCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 6 0.19
22 16 0.50
23 10 0.31
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (22 bp):
AAAAAAGAAAAAAAGAAAGAAG
Found at i:34490312 original size:19 final size:18
Alignment explanation
Indices: 34490285--34490343 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 18
34490275 AAACAAAAAA
34490285 AAAAGAGAAAAGAAAGAAGG
1 AAAA-AGAAAA-AAAGAAGG
*
34490305 AAAAAGAAAAAAAGAAAGA
1 AAAAAGAAAAAAAG-AAGG
*
34490324 AGAAAAGAAAAAAAAAAGG
1 A-AAAAGAAAAAAAGAAGG
34490343 A
1 A
34490344 GAGGTCAAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 4 0.12
19 14 0.41
20 16 0.47
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAAAAAGAAGG
Found at i:34490322 original size:26 final size:26
Alignment explanation
Indices: 34490274--34490340 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
34490264 AATTGTTAAA
* *
34490274 AAAACAAAAAAAAAAGAGAAAAGAA-
1 AAAAGAAAAAAAAAAAAGAAAAGAAG
*
34490299 AGAAGGAAAAAGAAAAAAAG-AAAGAAG
1 A-AAAGAAAAA-AAAAAAAGAAAAGAAG
34490326 AAAAGAAAAAAAAAA
1 AAAAGAAAAAAAAAA
34490341 GGAGAGGTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
25 6 0.17
26 21 0.60
27 8 0.23
ACGTcount: A:0.82, C:0.01, G:0.16, T:0.00
Consensus pattern (26 bp):
AAAAGAAAAAAAAAAAAGAAAAGAAG
Found at i:34491655 original size:44 final size:44
Alignment explanation
Indices: 34491587--34491887 Score: 142
Period size: 44 Copynumber: 6.8 Consensus size: 44
34491577 AGGCCATTAG
* * *
34491587 TCCTATCTCCTTGAA-CAGCAGTGGAGTAGGTTGAAGATTACAGA
1 TCCTATCTCCCT-AAGCAGTAGTGGAGTAGATTGAAGATTACAGA
* * *
34491631 TCCTGTCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGT-GA-A
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGAT--TACAGA
* * * **
34491675 TCTTATCTTCCC-AAG--GTAGTAAGGAAGCAGATTTAA-ACCACCAG-
1 TCCTATC-TCCCTAAGCAGTAGT--GG-AGTAGATTGAAGATTA-CAGA
* * *
34491719 TCATATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCACA
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGA
* * ** *
34491763 TCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGT-GA-A
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGAT--TACAGA
* * * * * **
34491807 TCTTATCTTCTTAAGGTAGTAG-GGAAGTAGATTTAA-ACCACTAG-
1 TCCTATCTCCCTAA-GCAGTAGTGG-AGTAGATTGAAGATTAC-AGA
* *
34491851 TCCTATCTCCCTAAGTAGTAGTGGAGCAGATTGAAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGA
34491888 CAGTGAATCT
Statistics
Matches: 190, Mismatches: 43, Indels: 48
0.68 0.15 0.17
Matches are distributed among these distances:
42 5 0.03
43 33 0.17
44 117 0.62
45 28 0.15
46 7 0.04
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
TCCTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGA
Found at i:34491814 original size:88 final size:88
Alignment explanation
Indices: 34491722--34491899 Score: 193
Period size: 88 Copynumber: 2.0 Consensus size: 88
34491712 CCACCAGTCA
* *
34491722 TATCTCCCTAA-GCAGTAGTGG-AGTAGATTGAAGATTGCAC-A-TCCTGTCTCCCTAAGCAGTA
1 TATCTCCCTAAGGCAGTAG-GGAAGTAGATTGAA-A--CCACTAGTCCTATCTCCCTAAGCAGTA
**
34491783 GTGGAGCAGATCAAAGATGGTGAATCT
62 GTGGAGCAGATCAAAGACAGTGAATCT
* * * * *
34491810 TATCTTCTTAAGGTAGTAGGGAAGTAGATTTAAACCACTAGTCCTATCTCCCTAAGTAGTAGTGG
1 TATCTCCCTAAGGCAGTAGGGAAGTAGATTGAAACCACTAGTCCTATCTCCCTAAGCAGTAGTGG
**
34491875 AGCAGATTGAAGACAGTGAATCT
66 AGCAGATCAAAGACAGTGAATCT
34491898 TA
1 TA
34491900 CTTTCCCGGG
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
86 3 0.04
87 1 0.01
88 55 0.73
89 16 0.21
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (88 bp):
TATCTCCCTAAGGCAGTAGGGAAGTAGATTGAAACCACTAGTCCTATCTCCCTAAGCAGTAGTGG
AGCAGATCAAAGACAGTGAATCT
Found at i:34491827 original size:132 final size:132
Alignment explanation
Indices: 34491606--34491887 Score: 447
Period size: 132 Copynumber: 2.1 Consensus size: 132
34491596 CTTGAACAGC
* * * *
34491606 AGTGGAGTAGGTTGAAGATTACAGATCCTGTCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGG
1 AGTGGAGTAGATTGAAGATTACACATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
34491671 TGAATCTTATCTTCCCAAGGTAGTAAGGAAGCAGATTTAAACCACCAGTCATATCTCCCTAAGCA
66 TGAATCTTATCTTCCCAAGGTAGTAAGGAAGCAGATTTAAACCACCAGTCATATCTCCCTAAGCA
34491736 GT
131 GT
*
34491738 AGTGGAGTAGATTGAAGATTGCACATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
1 AGTGGAGTAGATTGAAGATTACACATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
** * * * * *
34491803 TGAATCTTATCTTCTTAAGGTAGTAGGGAAGTAGATTTAAACCACTAGTCCTATCTCCCTAAGTA
66 TGAATCTTATCTTCCCAAGGTAGTAAGGAAGCAGATTTAAACCACCAGTCATATCTCCCTAAGCA
34491868 GT
131 GT
*
34491870 AGTGGAGCAGATTGAAGA
1 AGTGGAGTAGATTGAAGA
34491888 CAGTGAATCT
Statistics
Matches: 137, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 137 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (132 bp):
AGTGGAGTAGATTGAAGATTACACATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
TGAATCTTATCTTCCCAAGGTAGTAAGGAAGCAGATTTAAACCACCAGTCATATCTCCCTAAGCA
GT
Found at i:34491984 original size:50 final size:50
Alignment explanation
Indices: 34491925--34492084 Score: 178
Period size: 50 Copynumber: 3.2 Consensus size: 50
34491915 CAAGGGGAAC
*
34491925 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * ** *** * * * *
34491975 AGATTGAAGCCACAACGGTGGATCTTATTTCTTTGGCAGTGC-ATTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATT-AAAA
*
34492025 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTACAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
34492075 AGATTGAAGC
1 AGATTGAAGC
34492085 CACTGTTAGA
Statistics
Matches: 82, Mismatches: 26, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
49 3 0.04
50 76 0.93
51 3 0.04
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
Found at i:34493740 original size:50 final size:49
Alignment explanation
Indices: 34493587--34494301 Score: 401
Period size: 50 Copynumber: 14.3 Consensus size: 49
34493577 TCTAACAGCC
* * * *
34493587 ACAACGGCGAATCTTAATTCTCTGGCAGTGCAGTGGAATAGATTGAAGCT
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGT-GAACAAATTGAAGCT
** * * * * * * *
34493637 ACAACGGCGAATCTTGTTTCCCCGACATTACAATTAA-AAGATTGAAGCC
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGAACAA-ATTGAAGCT
* * * *
34493686 ACAACGACGAATCTTATTTCTCTGGCGGTGCAGTGGAACAAATTGAAGCT
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGT-GAACAAATTGAAGCT
* * * * * * * *
34493736 ACAACAGCGAATCTTGCTTCCCCGACA-TAGCAATTAAAAAGATTGAAGCC
1 ACAACGGCGAATCTTACTTCCCTGGCAGT-GCAGTGAACAA-ATTGAAGCT
* * *
34493786 ACAACGGCGAATCTTATTTCTCTGGCAGTGCAGTGGAACAGATTGAAGCT
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGT-GAACAAATTGAAGCT
* * * * * * * * *
34493836 ACAACAGTGAATCTTGCTTCCCCGACATTGCAATTAA-AAGGATTGAAGCC
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGAACAA--ATTGAAGCT
** *
34493886 ACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGATTGAAGCT
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGT-GAACAAATTGAAGCT
** * * * * * * * * *
34493936 ACAACAACGAATCTTGCTTCCCCGACATTACAATTAAAAAGATTGAAGCC
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGAACAA-ATTGAAGCT
* * *
34493986 ACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTAGATCAGATTGAAGCT
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGT-GAACAAATTGAAGCT
* * * * * * * * *
34494036 ACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAGAAGATTGAAGCC
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGAACAA-ATTGAAGCT
** * * * * * * *
34494086 ACAACAACGAATCTTACCTCCCTAGCGGTGTAGTGGAATAGATTAAAGCT
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGT-GAACAAATTGAAGCT
* * * * * * * * *
34494136 ACAATGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGAACAA-ATTGAAGCT
* * ** *
34494186 ACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAGTAGATTGAAGCT
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGT-GAACAAATTGAAGCT
* * * * * * * * *
34494236 ACAACGTCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
1 ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGAACAA-ATTGAAGCT
*
34494286 ACAACGGTGAATCTTA
1 ACAACGGCGAATCTTA
34494302 TCTCCTTGAA
Statistics
Matches: 477, Mismatches: 170, Indels: 36
0.70 0.25 0.05
Matches are distributed among these distances:
48 2 0.00
49 52 0.11
50 407 0.85
51 15 0.03
52 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (49 bp):
ACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGAACAAATTGAAGCT
Found at i:34493822 original size:100 final size:100
Alignment explanation
Indices: 34493583--34494301 Score: 1073
Period size: 100 Copynumber: 7.2 Consensus size: 100
34493573 GCGATCTAAC
* * * * *
34493583 AGCCACAACGGCGAATCTTAATTCTCTGGCAGTGCAGTGGAATAGATTGAAGCTACAACGGCGAA
1 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAA
* *
34493648 TCTTGTTTCCCCGACATTACAATT-AAAAGATTGA
66 TCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
* * * *
34493682 AGCCACAACGACGAATCTTATTTCTCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACAGCGAA
1 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAA
*
34493747 TCTTGCTTCCCCGACATAGCAATTAAAAAGATTGA
66 TCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
* * * *
34493782 AGCCACAACGGCGAATCTTATTTCTCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACAGTGAA
1 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAA
*
34493847 TCTTGCTTCCCCGACATTGCAATTAAAAGGATTGA
66 TCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
* *
34493882 AGCCACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGATTGAAGCTACAACAACGAA
1 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAA
*
34493947 TCTTGCTTCCCCGACATTACAATTAAAAAGATTGA
66 TCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
* * *
34493982 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTAGATCAGATTGAAGCTACAACGGCGAA
1 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAA
* *
34494047 TCTTGCTTCCCCGACATTGTAATTAAGAAGATTGA
66 TCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
** * * * * * **
34494082 AGCCACAACAACGAATCTTACCTCCCTAGCGGTGTAGTGGAATAGATTAAAGCTACAATGGCGAA
1 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAA
34494147 TCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
66 TCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
* **
34494182 AGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAGTAGATTGAAGCTACAAC-GTCGA
1 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAG-CGA
34494246 ATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
65 ATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
*
34494282 AGCCACAACGGTGAATCTTA
1 AGCCACAACGGCGAATCTTA
34494302 TCTCCTTGAA
Statistics
Matches: 566, Mismatches: 52, Indels: 3
0.91 0.08 0.00
Matches are distributed among these distances:
99 81 0.14
100 485 0.86
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (100 bp):
AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAA
TCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
Found at i:34496086 original size:3 final size:3
Alignment explanation
Indices: 34496078--34496113 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
34496068 TAATCTTGTG
34496078 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
34496114 GTTTATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:34496497 original size:17 final size:17
Alignment explanation
Indices: 34496475--34496507 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
34496465 ATGTACTTAT
34496475 TTATATATATATGTATG
1 TTATATATATATGTATG
*
34496492 TTATATCTATATGTAT
1 TTATATATATATGTAT
34496508 ATATGCATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.03, G:0.09, T:0.55
Consensus pattern (17 bp):
TTATATATATATGTATG
Found at i:34496702 original size:35 final size:36
Alignment explanation
Indices: 34496631--34496711 Score: 105
Period size: 35 Copynumber: 2.3 Consensus size: 36
34496621 TACCCCTTTT
*
34496631 TACATACATA-GTTTTTATATTTTATAATTTGTATA
1 TACATACATATGTTTTTATATTTTATAATTTGCATA
*
34496666 TACATACATATTTTTTATATATTTTATAA-TT-CATA
1 TACATACATATGTTTT-TATATTTTATAATTTGCATA
*
34496701 TACATATATAT
1 TACATACATAT
34496712 ATATATCCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
35 23 0.56
36 6 0.15
37 12 0.29
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.53
Consensus pattern (36 bp):
TACATACATATGTTTTTATATTTTATAATTTGCATA
Found at i:34496784 original size:51 final size:51
Alignment explanation
Indices: 34496662--34496800 Score: 137
Period size: 51 Copynumber: 2.8 Consensus size: 51
34496652 TTATAATTTG
34496662 TATATACATAC-ATAT-TT-TTTATATATTTTATAA-TTCATATACATATA
1 TATATACATACTATATGTTCTTTATATATTTTATAATTTCATATACATATA
* * * * *
34496709 TATATATATCCACATGTATG-TCTTT-TATACTTTATAATTTCAATGTACATATT
1 TATATACAT--AC-TATATGTTCTTTATATATTTTATAATTTC-ATATACATATA
* *
34496762 TATATACATACTTTATGTTCTTTATATTTTTTATAATTT
1 TATATACATACTATATGTTCTTTATATATTTTATAATTT
34496801 TGCTTATTTC
Statistics
Matches: 73, Mismatches: 9, Indels: 15
0.75 0.09 0.15
Matches are distributed among these distances:
47 8 0.11
49 2 0.03
50 5 0.07
51 22 0.30
52 19 0.26
53 17 0.23
ACGTcount: A:0.34, C:0.10, G:0.03, T:0.53
Consensus pattern (51 bp):
TATATACATACTATATGTTCTTTATATATTTTATAATTTCATATACATATA
Found at i:34501158 original size:51 final size:51
Alignment explanation
Indices: 34501082--34501180 Score: 189
Period size: 51 Copynumber: 1.9 Consensus size: 51
34501072 TAAAAACCTA
34501082 CAATATATACCTAAATACAGAATATCACTAACAATCAGAAACATTTAAATC
1 CAATATATACCTAAATACAGAATATCACTAACAATCAGAAACATTTAAATC
*
34501133 CAATATATACCTAAATACAGAATATCACTAACAGTCAGAAACATTTAA
1 CAATATATACCTAAATACAGAATATCACTAACAATCAGAAACATTTAA
34501181 GATTTACATC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.51, C:0.19, G:0.05, T:0.25
Consensus pattern (51 bp):
CAATATATACCTAAATACAGAATATCACTAACAATCAGAAACATTTAAATC
Found at i:34503039 original size:22 final size:22
Alignment explanation
Indices: 34503007--34503082 Score: 134
Period size: 22 Copynumber: 3.5 Consensus size: 22
34502997 AGGATGCAGC
*
34503007 CTTAGTTCGTTAAACATGAGAG
1 CTTAGTACGTTAAACATGAGAG
34503029 CTTAGTACGTTAAACATGAGAG
1 CTTAGTACGTTAAACATGAGAG
*
34503051 CTTAGTACGTGAAACATGAGAG
1 CTTAGTACGTTAAACATGAGAG
34503073 CTTAGTACGT
1 CTTAGTACGT
34503083 ACTATCAACT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (22 bp):
CTTAGTACGTTAAACATGAGAG
Found at i:34507190 original size:19 final size:19
Alignment explanation
Indices: 34507155--34507202 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
34507145 TTTTAATAAA
*
34507155 ATTTATAAATATAATTTC-
1 ATTTATAAAAATAATTTCT
*
34507173 ATTTATTAAAAATTATTTCT
1 ATTTA-TAAAAATAATTTCT
34507193 ATTTTATAAA
1 A-TTTATAAA
34507203 CATTTTATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 5 0.20
19 11 0.44
20 5 0.20
21 4 0.16
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTATAAAAATAATTTCT
Found at i:34522682 original size:10 final size:11
Alignment explanation
Indices: 34522656--34522681 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
34522646 AATGATGACC
34522656 AAAAACATACT
1 AAAAACATACT
34522667 AAAAACATACT
1 AAAAACATACT
34522678 AAAA
1 AAAA
34522682 CTTGAATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAACATACT
Found at i:34541454 original size:64 final size:64
Alignment explanation
Indices: 34541385--34541525 Score: 158
Period size: 64 Copynumber: 2.2 Consensus size: 64
34541375 GCGACCTGGG
* *
34541385 CACACGCCCGTGTCCCCTGCCTGTGTGACTCCAAATCTGAACTCAT-GAAGTTACATGGCCTAGA
1 CACACGCTCGTGTCCCCTGCCTGTGTGACTCCAAATCTGAACTC-TGGAAGTTACACGGCCTAGA
* * * * ** * ** *
34541449 CACACGCTCGTTTGCCTTGTCTGTGTGACTTTAAATCTTAACTCTGGGCGTTACACGGCCTGGA
1 CACACGCTCGTGTCCCCTGCCTGTGTGACTCCAAATCTGAACTCTGGAAGTTACACGGCCTAGA
34541513 CACACGCTCGTGT
1 CACACGCTCGTGT
34541526 GACTTACCCG
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
63 1 0.02
64 62 0.98
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (64 bp):
CACACGCTCGTGTCCCCTGCCTGTGTGACTCCAAATCTGAACTCTGGAAGTTACACGGCCTAGA
Found at i:34541556 original size:64 final size:64
Alignment explanation
Indices: 34541407--34541570 Score: 154
Period size: 64 Copynumber: 2.6 Consensus size: 64
34541397 TCCCCTGCCT
* * * * **
34541407 GTGTGACTCC-AAATCTGAACTCATGA-AGTTACATGGCCTAGACACACGCTCGTTTGCCTTGTC
1 GTGTGAC-CCTAAATCTAAACTCA-GAGAGTTACACGGCCTAGACACACGCTCGTGTGACTTACC
*
34541470 T
64 C
** * * * * *
34541471 GTGTGACTTTAAATCTTAACTCTGGGCGTTACACGGCCTGGACACACGCTCGTGTGACTTACCC
1 GTGTGACCCTAAATCTAAACTCAGAGAGTTACACGGCCTAGACACACGCTCGTGTGACTTACCC
34541535 GTGTGACCCTAAAT-TAAAACTCAGAGAGTTACACGG
1 GTGTGACCCTAAATCT-AAACTCAGAGAGTTACACGG
34541571 TCCACCCTAC
Statistics
Matches: 78, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
63 2 0.03
64 76 0.97
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (64 bp):
GTGTGACCCTAAATCTAAACTCAGAGAGTTACACGGCCTAGACACACGCTCGTGTGACTTACCC
Found at i:34543442 original size:15 final size:15
Alignment explanation
Indices: 34543397--34543442 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
34543387 AGTTCCTATG
34543397 TAGGGTTCACACATA
1 TAGGGTTCACACATA
* * *
34543412 CATGGTTCGCACATA
1 TAGGGTTCACACATA
34543427 TAGGGTTCACACATA
1 TAGGGTTCACACATA
34543442 T
1 T
34543443 GATTGGTTGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (15 bp):
TAGGGTTCACACATA
Found at i:34547049 original size:15 final size:15
Alignment explanation
Indices: 34547029--34547062 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
34547019 ATTTAACTTA
34547029 ACTAATTTAATTGCT
1 ACTAATTTAATTGCT
34547044 ACTAATTTAATTGCT
1 ACTAATTTAATTGCT
34547059 ACTA
1 ACTA
34547063 CTTGAACGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.35, C:0.15, G:0.06, T:0.44
Consensus pattern (15 bp):
ACTAATTTAATTGCT
Found at i:34547276 original size:20 final size:23
Alignment explanation
Indices: 34547248--34547298 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 23
34547238 GTTTTTTACT
*
34547248 AAAATAATA-CAAAAGAA-ATA-
1 AAAAAAATACCAAAAGAATATAC
*
34547268 AAAAAAATACCAAAATAATATAC
1 AAAAAAATACCAAAAGAATATAC
34547291 AAAAAAAT
1 AAAAAAAT
34547299 TATTTACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 8 0.31
21 7 0.27
22 3 0.12
23 8 0.31
ACGTcount: A:0.75, C:0.08, G:0.02, T:0.16
Consensus pattern (23 bp):
AAAAAAATACCAAAAGAATATAC
Found at i:34547282 original size:11 final size:10
Alignment explanation
Indices: 34547248--34547298 Score: 50
Period size: 10 Copynumber: 4.8 Consensus size: 10
34547238 GTTTTTTACT
*
34547248 AAAATAATAC
1 AAAAAAATAC
34547258 AAAAGAAATA-
1 AAAA-AAATAC
34547268 AAAAAAATACC
1 AAAAAAATA-C
34547279 AAAATAATATAC
1 AAAA-AA-ATAC
34547291 AAAAAAAT
1 AAAAAAAT
34547299 TATTTACCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
9 5 0.14
10 10 0.29
11 10 0.29
12 7 0.20
13 3 0.09
ACGTcount: A:0.75, C:0.08, G:0.02, T:0.16
Consensus pattern (10 bp):
AAAAAAATAC
Found at i:34547443 original size:27 final size:27
Alignment explanation
Indices: 34547409--34547486 Score: 120
Period size: 27 Copynumber: 2.9 Consensus size: 27
34547399 GGAGGGTTCC
* * *
34547409 TGATTGGCGGCACCAAAGGTGCCAATG
1 TGATTGGCGGCACCGATGGTGCCAAGG
34547436 TGATTGGCGGCACCGATGGTGCCAAGG
1 TGATTGGCGGCACCGATGGTGCCAAGG
*
34547463 AGATTGGCGGCACCGATGGTGCCA
1 TGATTGGCGGCACCGATGGTGCCA
34547487 TACTAAGTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.22, C:0.23, G:0.37, T:0.18
Consensus pattern (27 bp):
TGATTGGCGGCACCGATGGTGCCAAGG
Found at i:34547497 original size:27 final size:27
Alignment explanation
Indices: 34547413--34547502 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
34547403 GGTTCCTGAT
* * * * *
34547413 TGGCGGCACCAAAGGTGCCAATGTGAT
1 TGGCGGCACCGATGGTGCCAACGAGAG
* *
34547440 TGGCGGCACCGATGGTGCCAAGGAGAT
1 TGGCGGCACCGATGGTGCCAACGAGAG
*
34547467 TGGCGGCACCGATGGTGCCATACTA-AG
1 TGGCGGCACCGATGGTGCCA-ACGAGAG
34547494 TGGCGGCAC
1 TGGCGGCAC
34547503 TACTCGTGTT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 53 0.96
28 2 0.04
ACGTcount: A:0.22, C:0.24, G:0.37, T:0.17
Consensus pattern (27 bp):
TGGCGGCACCGATGGTGCCAACGAGAG
Found at i:34548005 original size:36 final size:37
Alignment explanation
Indices: 34547934--34548010 Score: 93
Period size: 40 Copynumber: 2.0 Consensus size: 37
34547924 TAAAAAACCC
*
34547934 TTTTAGTTAGTATTATTTTTAGTAAAACCCTAATTAATAA
1 TTTTAGTTAGTATTATTTTGAGTAAAA--C-AATTAATAA
* *
34547974 TTTTAGTTAGTATTATTTTGAGTATAA-AATTATTAA
1 TTTTAGTTAGTATTATTTTGAGTAAAACAATTAATAA
34548010 T
1 T
34548011 ATTATTATTG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 9 0.26
40 25 0.74
ACGTcount: A:0.36, C:0.04, G:0.09, T:0.51
Consensus pattern (37 bp):
TTTTAGTTAGTATTATTTTGAGTAAAACAATTAATAA
Found at i:34553708 original size:16 final size:15
Alignment explanation
Indices: 34553687--34553716 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
34553677 AATAAAAATA
34553687 TATTATTTTCATATTT
1 TATTATTTT-ATATTT
34553703 TATTATTTTATATT
1 TATTATTTTATATT
34553717 ATTTTAGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTATTTTATATTT
Found at i:34554284 original size:32 final size:32
Alignment explanation
Indices: 34554241--34554388 Score: 93
Period size: 35 Copynumber: 4.3 Consensus size: 32
34554231 TACCTTTTTT
* *
34554241 TTCTTTTTTTTTTCCTTCCTTCCCTCTTCTTC
1 TTCTTTCTTTTTTCTTTCCTTCCCTCTTCTTC
* * * *
34554273 TTCTTTCTTTTTTTTTTCTCCTCCTTTCCTTCTTT
1 TTCTTTCTTTTTTCTTTC-CTTCC-CT-CTTCTTC
* *
34554308 TTCTTTCTTTTTTCTTCTCCTTTCCTTTTCTTTCC
1 TTCTTTCTTTTTTCTT-TCCTTCCCTCTTC-TT-C
* *
34554343 TTATTT-TTCTTTCTTTCCTCTCCTCTCCTTTCCTT-
1 TTCTTTCTTTTTTCTTTCCT-TCC-CT-C-TT-CTTC
34554378 TTCTTTCTTTT
1 TTCTTTCTTTT
34554389 CCTTCCTTTA
Statistics
Matches: 86, Mismatches: 18, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
32 15 0.17
33 11 0.13
34 14 0.16
35 36 0.42
36 5 0.06
37 4 0.05
38 1 0.01
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (32 bp):
TTCTTTCTTTTTTCTTTCCTTCCCTCTTCTTC
Found at i:34554302 original size:5 final size:5
Alignment explanation
Indices: 34554294--34554397 Score: 56
Period size: 5 Copynumber: 21.2 Consensus size: 5
34554284 TTTTTTCTCC
* * * * *
34554294 TCCTT TCC-T TCTTT TTCTT TCTTTT TTCTT CTCCTT TCCTT TTCTT TCCTT
1 TCCTT TCCTT TCCTT TCCTT TC-CTT TCCTT -TCCTT TCCTT TCCTT TCCTT
* * * * *
34554345 AT--TT TTCTT T-CTT TCCTC TCCTC TCCTT TCCTT TTCTT TCTTT TCC-T
1 -TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT
34554392 TCCTT T
1 TCCTT T
34554398 ATTTCTTTCT
Statistics
Matches: 75, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
3 1 0.01
4 13 0.17
5 53 0.71
6 8 0.11
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (5 bp):
TCCTT
Found at i:34554305 original size:35 final size:37
Alignment explanation
Indices: 34554240--34554328 Score: 114
Period size: 36 Copynumber: 2.5 Consensus size: 37
34554230 TTACCTTTTT
*
34554240 TTTCTTTTTTTTTTC-CTTCCTTCCCTCTTCTTCTTC
1 TTTCTTTTTTTTTTCTCCTCCTTCCCTCTTCTTCTTC
* *
34554276 TTTCTTTTTTTTTTCTCCTCCTT-TC-CTTCTTTTTC
1 TTTCTTTTTTTTTTCTCCTCCTTCCCTCTTCTTCTTC
*
34554311 TTTC-TTTTTTCTTCTCCT
1 TTTCTTTTTTTTTTCTCCT
34554329 TTCCTTTTCT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
34 13 0.27
35 13 0.27
36 16 0.33
37 6 0.12
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (37 bp):
TTTCTTTTTTTTTTCTCCTCCTTCCCTCTTCTTCTTC
Found at i:34554311 original size:31 final size:32
Alignment explanation
Indices: 34554240--34554413 Score: 126
Period size: 31 Copynumber: 5.2 Consensus size: 32
34554230 TTACCTTTTT
34554240 TTTCTTTTTTTTTTCCTTCCTTCCCTCTT-CTTCTTC
1 TTTCTTTTTTTTTT-C-TCC-T-CCT-TTCCTTCTTC
34554276 TTTCTTTTTTTTTTCTCCTCCTTTCCTTCTT-
1 TTTCTTTTTTTTTTCTCCTCCTTTCCTTCTTC
* *
34554307 TTTCTTTCTTTTTTCTTCTCCTTTCCTT-TTC
1 TTTCTTTTTTTTTTCTCCTCCTTTCCTTCTTC
* * *
34554338 TTTCCTTATTTTTCTTTCT-TTCCTCTCC-TCTCC
1 TTT-CTT-TTTTT-TTTCTCCTCCTTTCCTTCTTC
**
34554371 TTTCCTTTTCTTTCTTT-TCCTTCCTTTATTTCTTTC
1 TTT-CTTTT-TTT-TTTCTCC-TCCTTTCCTTC-TTC
34554407 TTTCTTT
1 TTTCTTT
34554414 CCCTCTCCTT
Statistics
Matches: 116, Mismatches: 11, Indels: 23
0.77 0.07 0.15
Matches are distributed among these distances:
30 2 0.02
31 31 0.27
32 16 0.14
33 28 0.24
34 13 0.11
35 7 0.06
36 19 0.16
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.68
Consensus pattern (32 bp):
TTTCTTTTTTTTTTCTCCTCCTTTCCTTCTTC
Found at i:34554341 original size:41 final size:42
Alignment explanation
Indices: 34554296--34554384 Score: 135
Period size: 43 Copynumber: 2.1 Consensus size: 42
34554286 TTTTCTCCTC
* * *
34554296 CTTTCCTTCTTTTTCTTTCTTT-TTTCTTCTCCTTTCCTTTT
1 CTTTCCTTATTTTTCTTTCTTTCTCTCCTCTCCTTTCCTTTT
34554337 CTTTCCTTATTTTTCTTTCTTTCCTCTCCTCTCCTTTCCTTTT
1 CTTTCCTTATTTTTCTTTCTTT-CTCTCCTCTCCTTTCCTTTT
34554380 CTTTC
1 CTTTC
34554385 TTTTCCTTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 21 0.49
43 22 0.51
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (42 bp):
CTTTCCTTATTTTTCTTTCTTTCTCTCCTCTCCTTTCCTTTT
Found at i:34554389 original size:38 final size:37
Alignment explanation
Indices: 34554233--34554389 Score: 124
Period size: 38 Copynumber: 4.4 Consensus size: 37
34554223 ATAAAAATTA
*
34554233 CCTTTTTTTTCTTTT-TTTTTTCCT-TCCT-TCCCTCTT
1 CCTTTTCTTTCTTTTCTTTTTTCCTCTCCTCT-CCT-TT
34554269 -CTTCTTCTTTC-TTT-TTTTTT--TCT-C-CTCCTTT
1 CCTT-TTCTTTCTTTTCTTTTTTCCTCTCCTCTCCTTT
* *
34554300 CCTTCTT-TTTC-TTTCTTTTTTCTTCTCCTTTCCTTT
1 CCTT-TTCTTTCTTTTCTTTTTTCCTCTCCTCTCCTTT
* *
34554336 TCTTTCCTTAT-TTTTCTTTCTTTCCTCTCCTCTCCTTT
1 CCTTTTCTT-TCTTTTCTTT-TTTCCTCTCCTCTCCTTT
34554374 CCTTTTCTTTCTTTTC
1 CCTTTTCTTTCTTTTC
34554390 CTTCCTTTAT
Statistics
Matches: 99, Mismatches: 8, Indels: 26
0.74 0.06 0.20
Matches are distributed among these distances:
31 9 0.09
32 15 0.15
33 3 0.03
34 4 0.04
35 14 0.14
36 17 0.17
37 9 0.09
38 28 0.28
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (37 bp):
CCTTTTCTTTCTTTTCTTTTTTCCTCTCCTCTCCTTT
Found at i:34554557 original size:12 final size:12
Alignment explanation
Indices: 34554540--34554565 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
34554530 CCGTGCAGGC
34554540 TTTTTTTTGTTT
1 TTTTTTTTGTTT
34554552 TTTTTTTTGTTT
1 TTTTTTTTGTTT
34554564 TT
1 TT
34554566 GGTATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (12 bp):
TTTTTTTTGTTT
Found at i:34557520 original size:3 final size:3
Alignment explanation
Indices: 34557512--34557561 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
34557502 GAAATGAGTT
34557512 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
34557560 TT
1 TT
34557562 GATCAAGCTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:34557888 original size:19 final size:19
Alignment explanation
Indices: 34557860--34557918 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
34557850 TAGATTAATT
*
34557860 AATTATAGTATATATATTA
1 AATTAAAGTATATATATTA
* *
34557879 AATTAAAGTAAAGATATTAA
1 AATTAAAGTATATATATT-A
34557899 AATTTAAA-TGATATATATTA
1 AA-TTAAAGT-ATATATATTA
34557919 TCTTTCAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 15 0.47
20 5 0.16
21 12 0.38
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.41
Consensus pattern (19 bp):
AATTAAAGTATATATATTA
Found at i:34562326 original size:3 final size:3
Alignment explanation
Indices: 34562320--34562353 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
34562310 AAACTAATAA
34562320 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
34562354 GTAGTAGTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:34562358 original size:3 final size:3
Alignment explanation
Indices: 34562352--34562377 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
34562342 TTATTATTAT
34562352 TAG TAG TAG TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TA
34562378 ATATTATTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
TAG
Found at i:34562686 original size:37 final size:36
Alignment explanation
Indices: 34562585--34562688 Score: 95
Period size: 37 Copynumber: 2.8 Consensus size: 36
34562575 CGCATTTTAA
* ** * *
34562585 ATTTATATATATATATACATACTTACATGTATCCTT
1 ATTTATATAAATATATACATACTTATTTTTATACTT
* *
34562621 -TTTATA-AATATATATACACGTACATATTTTTATAATTT
1 ATTTATATAA-ATATATACA--TACTTATTTTTAT-ACTT
34562659 ATTTATATAAATATATACATACTTATTTTT
1 ATTTATATAAATATATACATACTTATTTTT
34562689 TTTATATTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
34 1 0.02
35 15 0.28
37 19 0.35
38 2 0.04
39 15 0.28
40 2 0.04
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (36 bp):
ATTTATATAAATATATACATACTTATTTTTATACTT
Found at i:34565694 original size:33 final size:33
Alignment explanation
Indices: 34565648--34565881 Score: 158
Period size: 36 Copynumber: 6.7 Consensus size: 33
34565638 TTAACCGTTA
* * *
34565648 TCGGTGGATTCAGCACTTAGCAACCACCAGTGAT
1 TCGG-GGAATCAGCACTTAGCAACCACCAATCAT
*
34565682 TCGGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAGAT
1 TCGGGGAATCAGCACTTAGCAACCAC---CA-A-TC----AT
34565724 AT-GGTGGAATCAGCACTTAGCAACCACCAATCAT
1 -TCGG-GGAATCAGCACTTAGCAACCACCAATCAT
34565758 TCAGGGAATGGAATCAGCACTTAGCAACCACCAATCAT
1 TC--GG---GGAATCAGCACTTAGCAACCACCAATCAT
*
34565796 TCAGGGAATCATAGGCACTTAGCAACCACCAATCAT
1 TCGGGGAATC--A-GCACTTAGCAACCACCAATCAT
* **
34565832 TCAGGGAATCATAACTTAGCAA-C-CC---C-T
1 TCGGGGAATCAGCACTTAGCAACCACCAATCAT
*
34565859 TGGGGGAATCAGCACTTAGCAAC
1 TCGGGGAATCAGCACTTAGCAAC
34565882 TCCCTTCACA
Statistics
Matches: 168, Mismatches: 12, Indels: 46
0.74 0.05 0.20
Matches are distributed among these distances:
27 19 0.11
28 1 0.01
31 2 0.01
32 1 0.01
33 36 0.21
34 7 0.04
35 1 0.01
36 37 0.22
38 35 0.21
39 1 0.01
40 2 0.01
42 4 0.02
43 22 0.13
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (33 bp):
TCGGGGAATCAGCACTTAGCAACCACCAATCAT
Found at i:34565771 original size:38 final size:38
Alignment explanation
Indices: 34565728--34565840 Score: 187
Period size: 38 Copynumber: 3.0 Consensus size: 38
34565718 AAAGATATGG
34565728 TGGAATCAGCACTTAGCAACCACCAATCATTCAGGGAA
1 TGGAATCAGCACTTAGCAACCACCAATCATTCAGGGAA
34565766 TGGAATCAGCACTTAGCAACCACCAATCATTCAGGGAA
1 TGGAATCAGCACTTAGCAACCACCAATCATTCAGGGAA
*
34565804 T--CAT-AGGCACTTAGCAACCACCAATCATTCAGGGAA
1 TGGAATCA-GCACTTAGCAACCACCAATCATTCAGGGAA
34565840 T
1 T
34565841 CATAACTTAG
Statistics
Matches: 73, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
35 1 0.01
36 33 0.45
38 39 0.53
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.19
Consensus pattern (38 bp):
TGGAATCAGCACTTAGCAACCACCAATCATTCAGGGAA
Found at i:34565821 original size:36 final size:35
Alignment explanation
Indices: 34565735--34565855 Score: 183
Period size: 36 Copynumber: 3.4 Consensus size: 35
34565725 TGGTGGAATC
*
34565735 AGCACTTAGCAACCACCAATCATTCAGGGAATGGAAT
1 AGCACTTAGCAACCACCAATCATTCAGGGAAT--CAT
34565772 CAGCACTTAGCAACCACCAATCATTCAGGGAATCAT
1 -AGCACTTAGCAACCACCAATCATTCAGGGAATCAT
34565808 AGGCACTTAGCAACCACCAATCATTCAGGGAATCAT
1 A-GCACTTAGCAACCACCAATCATTCAGGGAATCAT
34565844 A--ACTTAGCAACC
1 AGCACTTAGCAACC
34565856 CCTTGGGGGA
Statistics
Matches: 81, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
33 11 0.14
35 1 0.01
36 37 0.46
38 32 0.40
ACGTcount: A:0.37, C:0.28, G:0.16, T:0.19
Consensus pattern (35 bp):
AGCACTTAGCAACCACCAATCATTCAGGGAATCAT
Found at i:34565875 original size:27 final size:28
Alignment explanation
Indices: 34565835--34565887 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
34565825 CAATCATTCA
*
34565835 GGGAATCATAACTTAGCAAC-CCCTTGG
1 GGGAATCAGAACTTAGCAACTCCCTTGG
*
34565862 GGGAATCAGCACTTAGCAACTCCCTT
1 GGGAATCAGAACTTAGCAACTCCCTT
34565888 CACATTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (28 bp):
GGGAATCAGAACTTAGCAACTCCCTTGG
Found at i:34565942 original size:103 final size:102
Alignment explanation
Indices: 34565810--34566065 Score: 363
Period size: 103 Copynumber: 2.5 Consensus size: 102
34565800 GGAATCATAG
* *
34565810 GCACTTAGCAACCACCAAT-CATTCAGGGAATCATAACTTAGCAACCCCTTGGGGGAATCAGCAC
1 GCACTTAGCAACCACCAATGAATT-GGGGAATCA-AACTTAGCAACCCCTTGGGGGAATCAGCAC
*
34565874 TTAGCAACTCCC-TTCACATTTAAAGATACTGTGGAATCA
64 TTAGCAAC-CCCTTTCACATTTAAAGATACGGTGGAATCA
* *
34565913 GCACTTAGCAACCATCAATGAATTGGGGAATCAGCACTTAGCAACCCCTTGGGGGAATCAGCACT
1 GCACTTAGCAACCACCAATGAATTGGGGAATCA-AACTTAGCAACCCCTTGGGGGAATCAGCACT
* *
34565978 TAGCAACCCCTTTTATATTTAAAGATACGGTGGAATCA
65 TAGCAACCCCTTTCACATTTAAAGATACGGTGGAATCA
* * *
34566016 GCACTTAGCAACCACCAATGAGTCGGGCAATCAACACTTAGCAACCCCTT
1 GCACTTAGCAACCACCAATGAATTGGGGAATCAA-ACTTAGCAACCCCTT
34566066 CATATTCAAT
Statistics
Matches: 137, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
102 3 0.02
103 131 0.96
104 3 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (102 bp):
GCACTTAGCAACCACCAATGAATTGGGGAATCAAACTTAGCAACCCCTTGGGGGAATCAGCACTT
AGCAACCCCTTTCACATTTAAAGATACGGTGGAATCA
Done.