Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 16 of 168
Found at i:4430279 original size:35 final size:35
Alignment explanation
Indices: 4430233--4430614 Score: 250
Period size: 35 Copynumber: 10.7 Consensus size: 35
4430223 GACTATTTTT
* *
4430233 TTAGACGTGTCTATCCCAATATTTTTAAGGTTGGC
1 TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* * *
4430268 TTAGACCTGTCTATCCCAACCTTTTTAACGTTGCC
1 TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* * * * *
4430303 TGAGACGTATCAATCCCTATCCTAACCTTTTTAACGTTGCC
1 TTAGACG--T--GT--CTATCCCAACATTTTTAAGGTTGCC
* *
4430344 TTAGACGTATCTATCCCAACATTTTTAATGTTGCC
1 TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* * * **
4430379 TCTA-ACGAGTCCATCCCAACCTTTTTAAAATTGCC
1 T-TAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* *
4430414 TTAGATAG-GTCTATCCCAACCTTTTTAAGGTTGCC
1 TTAGA-CGTGTCTATCCCAACATTTTTAAGGTTGCC
* * *
4430449 TTACACGGGTCTATACCAACATTTTTAAGGTTGCC
1 TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* * * * * *
4430484 TTAGACGGGTCCATCTCAATC-TTTTAAAGTTTTCC
1 TTAGACGTGTCTATCCCAA-CATTTTTAAGGTTGCC
* * * * ** *
4430519 TTAGATAG-GTCAATCCAAACCTTTTTAAATTTTCC
1 TTAGA-CGTGTCTATCCCAACATTTTTAAGGTTGCC
* * * * *
4430554 TTAAAAGGGTCTATCCCAACCTTTTTAAGGTTACC
1 TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* * * *
4430589 TTAAACGGGTCTATCCTAACCTTTTT
1 TTAGACGTGTCTATCCCAACATTTTT
4430615 TAACAGTCGA
Statistics
Matches: 285, Mismatches: 48, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
34 6 0.02
35 239 0.84
36 5 0.02
37 3 0.01
39 2 0.01
41 30 0.11
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.37
Consensus pattern (35 bp):
TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
Found at i:4430335 original size:41 final size:41
Alignment explanation
Indices: 4430278--4430360 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
4430268 TTAGACCTGT
4430278 CTATCCCAACCTTTTTAACGTTGCCTGAGACGTATCAATCC
1 CTATCCCAACCTTTTTAACGTTGCCTGAGACGTATCAATCC
* * *
4430319 CTATCCTAACCTTTTTAACGTTGCCTTAGACGTATCTATCC
1 CTATCCCAACCTTTTTAACGTTGCCTGAGACGTATCAATCC
4430360 C
1 C
4430361 AACATTTTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.23, C:0.31, G:0.11, T:0.35
Consensus pattern (41 bp):
CTATCCCAACCTTTTTAACGTTGCCTGAGACGTATCAATCC
Found at i:4430473 original size:105 final size:105
Alignment explanation
Indices: 4430241--4430614 Score: 349
Period size: 105 Copynumber: 3.5 Consensus size: 105
4430231 TTTTAGACGT
* * ** * * *
4430241 GTCTATCCCAATATTTTTAAGGTTGGCTTAGACCTGTCTATCCCAACCTTTTTAACG-TTGCCTG
1 GTCTATCCCAACATTTTTAAGGTTGCCTTA-ACGGGTCCATCCCAACCTTTTTAAAGATTGCCTT
** * * * *
4430305 AGACGTATCAATCCCTATCCTAACCTTTTTAACGTTGCCTTAGACGT
65 AGA--TA--GGT--CTATCCAAACCTTTTTAAAGTTGCCTTAAACGG
* * *
4430352 ATCTATCCCAACATTTTTAATGTTGCCTCTAACGAGTCCATCCCAACCTTTTTAAA-ATTGCCTT
1 GTCTATCCCAACATTTTTAAGGTTGCCT-TAACGGGTCCATCCCAACCTTTTTAAAGATTGCCTT
* * *
4430416 AGATAGGTCTATCCCAACCTTTTTAAGGTTGCCTTACACGG
65 AGATAGGTCTATCCAAACCTTTTTAAAGTTGCCTTAAACGG
* * * * *
4430457 GTCTATACCAACATTTTTAAGGTTGCCTTAGACGGGTCCATCTCAATC-TTTTAAAGTTTTCCTT
1 GTCTATCCCAACATTTTTAAGGTTGCCTTA-ACGGGTCCATCCCAACCTTTTTAAAGATTGCCTT
* * * *
4430521 AGATAGGTCAATCCAAACCTTTTTAAATTTTCCTTAAAAGG
65 AGATAGGTCTATCCAAACCTTTTTAAAGTTGCCTTAAACGG
* * * *
4430562 GTCTATCCCAACCTTTTTAAGGTTACCTTAAACGGGTCTATCCTAACCTTTTT
1 GTCTATCCCAACATTTTTAAGGTTGCCTT-AACGGGTCCATCCCAACCTTTTT
4430615 TAACAGTCGA
Statistics
Matches: 220, Mismatches: 37, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
104 9 0.04
105 147 0.67
106 5 0.02
107 1 0.00
109 2 0.01
111 54 0.25
112 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (105 bp):
GTCTATCCCAACATTTTTAAGGTTGCCTTAACGGGTCCATCCCAACCTTTTTAAAGATTGCCTTA
GATAGGTCTATCCAAACCTTTTTAAAGTTGCCTTAAACGG
Found at i:4430508 original size:70 final size:68
Alignment explanation
Indices: 4430319--4430614 Score: 277
Period size: 70 Copynumber: 4.2 Consensus size: 68
4430309 GTATCAATCC
* ** * *
4430319 CTATCCTAACCTTTTTAACGTTGCCTTAGACGTATCTATCCCAACATTTTTAATGTTGCCTCTAA
1 CTATCC-AACCTTTTTAAAGTTGCCTTAGACGGGTCTATCCCAACCTTTTTAAGGTTGCCT-TAA
*
4430384 CGAGT
64 CGGGT
* * **
4430389 CCATCCCAACCTTTTTAAAATTGCCTTAGATAGGTCTATCCCAACCTTTTTAAGGTTGCCTTACA
1 CTAT-CCAACCTTTTTAAAGTTGCCTTAGACGGGTCTATCCCAACCTTTTTAAGGTTGCCTTA-A
4430454 CGGGT
64 CGGGT
* * * * * * * *
4430459 CTATACCAACATTTTTAAGGTTGCCTTAGACGGGTCCATCTCAATCTTTTAAAGTTTTCCTTAGA
1 CTAT-CCAACCTTTTTAAAGTTGCCTTAGACGGGTCTATCCCAACCTTTTTAAGGTTGCCTTA-A
**
4430524 TAGGT
64 CGGGT
* * * * * *
4430529 CAATCCAAACCTTTTTAAATTTTCCTTAAAAGGGTCTATCCCAACCTTTTTAAGGTTACCTTAAA
1 CTATCC-AACCTTTTTAAAGTTGCCTTAGACGGGTCTATCCCAACCTTTTTAAGGTTGCCTT-AA
4430594 CGGGT
64 CGGGT
4430599 CTATCCTAACCTTTTT
1 CTATCC-AACCTTTTT
4430615 TAACAGTCGA
Statistics
Matches: 179, Mismatches: 43, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
69 4 0.02
70 172 0.96
71 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (68 bp):
CTATCCAACCTTTTTAAAGTTGCCTTAGACGGGTCTATCCCAACCTTTTTAAGGTTGCCTTAACG
GGT
Found at i:4431178 original size:24 final size:24
Alignment explanation
Indices: 4431150--4431201 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
4431140 TTTCTAGAAG
* *
4431150 ATTTAG-TATTTATTAGTATAATAT
1 ATTTAGCT-TTTATTAGCATAAAAT
4431174 ATTTAGCTTTTATTAGCATAAAAT
1 ATTTAGCTTTTATTAGCATAAAAT
4431198 ATTT
1 ATTT
4431202 GAAATTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.52
Consensus pattern (24 bp):
ATTTAGCTTTTATTAGCATAAAAT
Found at i:4447633 original size:13 final size:13
Alignment explanation
Indices: 4447617--4447641 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4447607 ATCCAATAAT
4447617 AAGACTAAAAATA
1 AAGACTAAAAATA
4447630 AAGACTAAAAAT
1 AAGACTAAAAAT
4447642 TGTTCATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (13 bp):
AAGACTAAAAATA
Found at i:4448494 original size:21 final size:20
Alignment explanation
Indices: 4448434--4448494 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 20
4448424 TATATTATAT
*
4448434 TATATTATTTCAATTATAACTTA
1 TATATT-TTTTAATT-TAA-TTA
**
4448457 TAT-TTTTTTAAAGTAATTA
1 TATATTTTTTAATTTAATTA
4448476 TAATATTTTTTAATTTAAT
1 T-ATATTTTTTAATTTAAT
4448495 AAATTTTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 4 0.13
20 5 0.16
21 17 0.55
22 2 0.06
23 3 0.10
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (20 bp):
TATATTTTTTAATTTAATTA
Found at i:4449967 original size:20 final size:19
Alignment explanation
Indices: 4449929--4449979 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 19
4449919 AATTATAACT
4449929 TATATTTTTTGAAAGTAATTA
1 TATATTTTTT-AAAGTAA-TA
**
4449950 TATATTTTTTAATTTAATA
1 TATATTTTTTAAAGTAATA
*
4449969 -ATTTTTTTTAA
1 TATATTTTTTAA
4449980 GAATTTCTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 10 0.37
19 2 0.07
20 5 0.19
21 10 0.37
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (19 bp):
TATATTTTTTAAAGTAATA
Found at i:4450682 original size:750 final size:750
Alignment explanation
Indices: 4448391--4451978 Score: 6469
Period size: 750 Copynumber: 4.8 Consensus size: 750
4448381 AATTCATATA
* *
4448391 GATGATAATAAAAAATACAACGATTCTAAAAC----A-TATATTATATTATATTATTTCAATTAT
1 GATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATATTATATTATTTCAATTAT
* * *
4448451 AACTTATATTTTTTTAAAGTAATTATAATATTTTTTAATTTAATAA-ATTTTATAAGAATTTCTT
66 AACTTATATTTTTTGAAAGTAATTAT-ATATTTTTTAATTTAATAATTTTTTTTAAGAATTTCTT
* * * * *
4448515 AACAAATAAATATAATATATTTTATTTATATATACAACCAAATTTATGTATCGCACTAGATAAAA
130 AATAAATAAATATAATATATTTTATTTATACATACAACCAAATTTATGTCTTGCAGTAGATAAAA
* * * * * *
4448580 TACTAGAAGAGTTGATCTTTGAATTGTTGATATATATAACATTCATTAGTTATTGTCATCCCATA
195 TACTAGAAGAGTTGATATTTGAATTGTTGATATACA-AACATTCGTTAGTTACTGTCATCTCGTA
* *
4448645 GCTGGTATGATTGCATT-AAGCACAAAATCGCACATCTCATTTGAAAAAAAGTTC---TATCAGG
259 GCTGGTATGACTGCATTCAA-CACAAAATCGCACATCTCATTTGAAAAAAAGTTCAAGTATTAGG
* * * *
4448706 ACTTTCATTTTTAAAATTAAAAGTTACTTATTCTATGTTTTGACTACCGAGCCATGTGGATTGCA
323 ACTTTCATTATTGAAGTTAAAAGTTACTTATTCTATGTTTTGACTACCCAGCCATGTGGATTGCA
4448771 TGTGTGAAAATTTGTTGTATGTGCACAACTTTCAAAATGCTCCAAAGTTTTAATTTCTACTAGTT
388 TGTGTGAAAATTTGTTGTATGTGCACAACTTTCAAAATGCTCCAAAGTTTTAATTTCTACTAGTT
* *
4448836 TTTCACTCCTATTGCTCTCAAGCGCTCTATTAAGCATCAAAACATGAATATAAATTATTAGAAGT
453 TTTCACTCCTATTGCTCTCAAGTGCTCTGTTAAGCATCAAAACATGAATATAAATTATTAGAAGT
*
4448901 ATATAATTCATAATTAATGTCACATAATCACTGGAAATGCATTTAAAAAAAGCTAAAATATTTTG
518 ATATAATTCACAATTAATGTCACATAATCACTGGAAATGCA-TTAAAAAAAGCTAAAATATTTTG
4448966 ACAATTATAACTAATGAACACTTTTATAATTTGAATTTAAATTAAGTTATAATCACGTTTTAATA
582 ACAATTATAACTAATGAACACTTTTATAATTTGAATTTAAATTAAGTTATAATCACGTTTTAATA
*
4449031 TATATTAAAAAATCACTTTTGAAACACTTTATATATTTTTTTTAAAAAATTCTCTTCTCAGAGTT
647 TATATT-AAAAATCACTTTTGAAACACTTTATATATTTTTTTTTAAAAATTCTCTTCTCAGAGTT
4449096 GACAAAATATTTTTAAATTAAATTAAAAACAGTTCACATG
711 GACAAAATATTTTTAAATTAAATTAAAAACAGTTCACATG
*
4449136 GATGATAATAT-AAATATAACGATTCTAAAACATATATTATATTATACTATATTATTTCAATTAT
1 GATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATATTATATTATTTCAATTAT
*
4449200 AACTTATA---TTT-----T--TT-TA-A---TTTAA--T-A-AA--TTTGTTAAGAATTTC-T-
66 AACTTATATTTTTTGAAAGTAATTATATATTTTTTAATTTAATAATTTTTTTTAAGAATTTCTTA
4449242 -T-AATAAATATAATATATTTTATTTATACATACAACCAAATTTATGTAC-TGCAGTAGATAAAA
131 ATAAATAAATATAATATATTTTATTTATACATACAACCAAATTTATGT-CTTGCAGTAGATAAAA
* *
4449304 TACTAGAAGAGTTGATATTTGAATTGTTGATATATAAACATTCGTTAGTTACTCTCATCTCGTAG
195 TACTAGAAGAGTTGATATTTGAATTGTTGATATACAAACATTCGTTAGTTACTGTCATCTCGTAG
* * *
4449369 TTGGTATGATTGCATTCAACACAAAATTGCACATCTCATTTGAAAAAAAGTTCAAGTATTAGGAC
260 CTGGTATGACTGCATTCAACACAAAATCGCACATCTCATTTGAAAAAAAGTTCAAGTATTAGGAC
4449434 TTTCATTATTGAAGTTAAAAGTTACTTATTCTATGTTTTGACTACCCAGCCATGTGGATTGCATG
325 TTTCATTATTGAAGTTAAAAGTTACTTATTCTATGTTTTGACTACCCAGCCATGTGGATTGCATG
4449499 TGTGAAAATTTGTTGTATGTGCACAACTTTCAAAATGCTCCAAAGTTTTAATTTCTACTAGTTTT
390 TGTGAAAATTTGTTGTATGTGCACAACTTTCAAAATGCTCCAAAGTTTTAATTTCTACTAGTTTT
4449564 TCACTCCTATTGCTCTCAAGTGCTCTGTTAAGCATCAAAACATGAATATAAATTATTAGAAGTAT
455 TCACTCCTATTGCTCTCAAGTGCTCTGTTAAGCATCAAAACATGAATATAAATTATTAGAAGTAT
4449629 ATAATTCACAATTAATGTCACATAATCACTGGAAATGCATTAAAAAAAGCTAAAATATTTTGACA
520 ATAATTCACAATTAATGTCACATAATCACTGGAAATGCATTAAAAAAAGCTAAAATATTTTGACA
4449694 ATTATAACTAATGAACACTTTTATAATTTGAATTTAAATTAAGTTATAATCACGTTTTAATATAT
585 ATTATAACTAATGAACACTTTTATAATTTGAATTTAAATTAAGTTATAATCACGTTTTAATATAT
4449759 ATTAAAAATCACTTTTGAAACACTTTATATATTTTTTTTTAAAAATTCTCTTCTCAGAGTTGACA
650 ATTAAAAATCACTTTTGAAACACTTTATATATTTTTTTTTAAAAATTCTCTTCTCAGAGTTGACA
4449824 AAATATTTTTAAATTAAATTAAAAACAGTTCACATG
715 AAATATTTTTAAATTAAATTAAAAACAGTTCACATG
4449860 GATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATATTATATTATTTCAATTAT
1 GATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATATTATATTATTTCAATTAT
4449925 AACTTATATTTTTTGAAAGTAATTATATATTTTTTAATTTAATAATTTTTTTTAAGAATTTCTTA
66 AACTTATATTTTTTGAAAGTAATTATATATTTTTTAATTTAATAATTTTTTTTAAGAATTTCTTA
4449990 ATAAATAAATATAATATATTTTATTTATACATACAACCAAATTTATGTCTTGCAGTAGATAAAAT
131 ATAAATAAATATAATATATTTTATTTATACATACAACCAAATTTATGTCTTGCAGTAGATAAAAT
4450055 ACTAGAAGAGTTGATATTTGAATTGTTGATATACAAACATTCGTTAGTTACTGTCATCTCGTAGC
196 ACTAGAAGAGTTGATATTTGAATTGTTGATATACAAACATTCGTTAGTTACTGTCATCTCGTAGC
4450120 TGGTATGACTGCATTCAACACAAAATCGCACATCTCATTTGAAAAAAAGTTCAAGTATTAGGACT
261 TGGTATGACTGCATTCAACACAAAATCGCACATCTCATTTGAAAAAAAGTTCAAGTATTAGGACT
4450185 TTCATTATTGAAGTTAAAAGTTACTTATTCTATGTTTTGACTACCCAGCCATGTGGATTGCATGT
326 TTCATTATTGAAGTTAAAAGTTACTTATTCTATGTTTTGACTACCCAGCCATGTGGATTGCATGT
4450250 GTGAAAATTTGTTGTATGTGCACAACTTTCAAAATGCTCCAAAGTTTTAATTTCTACTAGTTTTT
391 GTGAAAATTTGTTGTATGTGCACAACTTTCAAAATGCTCCAAAGTTTTAATTTCTACTAGTTTTT
4450315 CACTCCTATTGCTCTCAAGTGCTCTGTTAAGCATCAAAACATGAATATAAATTATTAGAAGTATA
456 CACTCCTATTGCTCTCAAGTGCTCTGTTAAGCATCAAAACATGAATATAAATTATTAGAAGTATA
4450380 TAATTCACAATTAATGTCACATAATCACTGGAAATGCATTAAAAAAAGCTAAAATATTTTGACAA
521 TAATTCACAATTAATGTCACATAATCACTGGAAATGCATTAAAAAAAGCTAAAATATTTTGACAA
4450445 TTATAACTAATGAACACTTTTATAATTTGAATTTAAATTAAGTTATAATCACGTTTTAATATATA
586 TTATAACTAATGAACACTTTTATAATTTGAATTTAAATTAAGTTATAATCACGTTTTAATATATA
4450510 TTAAAAATCACTTTTGAAACACTTTATATATTTTTTTTTAAAAATTCTCTTCTCAGAGTTGACAA
651 TTAAAAATCACTTTTGAAACACTTTATATATTTTTTTTTAAAAATTCTCTTCTCAGAGTTGACAA
4450575 AATATTTTTAAATTAAATTAAAAACAGTTCACATG
716 AATATTTTTAAATTAAATTAAAAACAGTTCACATG
4450610 GATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATATTATATTATTTCAATTAT
1 GATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATATTATATTATTTCAATTAT
4450675 AACTTATATTTTTTGAAAGTAATTATATATTTTTTAATTTAATAATTTTTTTTAAGAATTTCTTA
66 AACTTATATTTTTTGAAAGTAATTATATATTTTTTAATTTAATAATTTTTTTTAAGAATTTCTTA
4450740 ATAAATAAATATAATATATTTTATTTATACATACAACCAAATTTATGTCTTGCAGTAGATAAAAT
131 ATAAATAAATATAATATATTTTATTTATACATACAACCAAATTTATGTCTTGCAGTAGATAAAAT
4450805 ACTAGAAGAGTTGATATTTGAATTGTTGATATACAAACATTCGTTAGTTACTGTCATCTCGTAGC
196 ACTAGAAGAGTTGATATTTGAATTGTTGATATACAAACATTCGTTAGTTACTGTCATCTCGTAGC
4450870 TGGTATGACTGCATTCAACACAAAATCGCACATCTCATTTGAAAAAAAGTTCAAGTATTAGGACT
261 TGGTATGACTGCATTCAACACAAAATCGCACATCTCATTTGAAAAAAAGTTCAAGTATTAGGACT
4450935 TTCATTATTGAAGTTAAAAGTTACTTATTCTATGTTTTGACTACCCAGCCATGTGGATTGCATGT
326 TTCATTATTGAAGTTAAAAGTTACTTATTCTATGTTTTGACTACCCAGCCATGTGGATTGCATGT
4451000 GTGAAAATTTGTTGTATGTGCACAACTTTCAAAATGCTCCAAAGTTTTAATTTCTACTAGTTTTT
391 GTGAAAATTTGTTGTATGTGCACAACTTTCAAAATGCTCCAAAGTTTTAATTTCTACTAGTTTTT
4451065 CACTCCTATTGCTCTCAAGTGCTCTGTTAAGCATCAAAACATGAATATAAATTATTAGAAGTATA
456 CACTCCTATTGCTCTCAAGTGCTCTGTTAAGCATCAAAACATGAATATAAATTATTAGAAGTATA
4451130 TAATTCACAATTAATGTCACATAATCACTGGAAATGCATTAAAAAAAGCTAAAATATTTTGACAA
521 TAATTCACAATTAATGTCACATAATCACTGGAAATGCATTAAAAAAAGCTAAAATATTTTGACAA
4451195 TTATAACTAATGAACACTTTTATAATTTGAATTTAAATTAAGTTATAATCACGTTTTAATATATA
586 TTATAACTAATGAACACTTTTATAATTTGAATTTAAATTAAGTTATAATCACGTTTTAATATATA
4451260 TTAAAAATCACTTTTGAAACACTTTATAT-TTTTTTTTTAAAAATTTCTCTTTCTCCAGGAGTTG
651 TTAAAAATCACTTTTGAAACACTTTATATATTTTTTTTTAAAAA-TTCTC-TTCT-CA-GAGTTG
4451324 ACCAAAAATATTTTTAAATTTAAATTAAAAAACAGTTCACATG
712 A-C-AAAATATTTTTAAA-TTAAATT-AAAAACAGTTCACATG
4451367 GATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATATTATATTATTTCAATTAT
1 GATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATATTATATTATTTCAATTAT
4451432 AACTTATATTTTTTGAAAGTAATTATATATTTTTTAATTTAATAATTTTTTTTAAGAATTTCTTA
66 AACTTATATTTTTTGAAAGTAATTATATATTTTTTAATTTAATAATTTTTTTTAAGAATTTCTTA
4451497 ATAAATAAATATAATATATTTTATTTATACATACAACCAAATTTATGTCTTGCAGTAGATAAAAT
131 ATAAATAAATATAATATATTTTATTTATACATACAACCAAATTTATGTCTTGCAGTAGATAAAAT
4451562 ACTAGAAGAGTTGATATTTGAATTGTTGATATACAAACATTCGTTAGTTACTGTCATCTCGTAGC
196 ACTAGAAGAGTTGATATTTGAATTGTTGATATACAAACATTCGTTAGTTACTGTCATCTCGTAGC
4451627 TGGTATGACTGCATTCAACACAAAATCGCACATCTCATTTGAAAAAAAGTTCAAGTATTAGGACT
261 TGGTATGACTGCATTCAACACAAAATCGCACATCTCATTTGAAAAAAAGTTCAAGTATTAGGACT
4451692 TTCATTATTGAAGTTAAAAGTTACTTATTCTATGTTTTGACTACCCAGCCATGTGGATTGCATGT
326 TTCATTATTGAAGTTAAAAGTTACTTATTCTATGTTTTGACTACCCAGCCATGTGGATTGCATGT
4451757 GTGAAAATTTGTTGTATGTGCACAACTTTCAAAATGCTCCAAAGTTTTAATTTCTACTAGTTTTT
391 GTGAAAATTTGTTGTATGTGCACAACTTTCAAAATGCTCCAAAGTTTTAATTTCTACTAGTTTTT
4451822 CACTCCTATTGCTCTCAAGTGCTCTGTTAAGCATCAAAACATGAATATAAATTATTAGAAGTATA
456 CACTCCTATTGCTCTCAAGTGCTCTGTTAAGCATCAAAACATGAATATAAATTATTAGAAGTATA
*
4451887 TAATTCACAATTAATGTCACATAATCACTGGAAAAGCATTAAAAAAAAGCTAAAATATTTTGACA
521 TAATTCACAATTAATGTCACATAATCACTGGAAATGCATT-AAAAAAAGCTAAAATATTTTGACA
4451952 ATTATAACTAATGAACACTTTTATAAT
585 ATTATAACTAATGAACACTTTTATAAT
4451979 NNNNNNNNNN
Statistics
Matches: 2762, Mismatches: 35, Indels: 79
0.96 0.01 0.03
Matches are distributed among these distances:
723 72 0.03
724 201 0.07
725 154 0.06
726 235 0.09
727 1 0.00
728 16 0.01
729 2 0.00
730 1 0.00
731 1 0.00
733 6 0.00
735 2 0.00
736 3 0.00
737 2 0.00
738 1 0.00
739 2 0.00
740 5 0.00
741 1 0.00
742 1 0.00
743 1 0.00
744 21 0.01
745 10 0.00
746 17 0.01
747 1 0.00
748 1 0.00
749 50 0.02
750 1294 0.47
751 4 0.00
752 2 0.00
753 7 0.00
754 1 0.00
755 14 0.01
756 7 0.00
757 575 0.21
758 51 0.02
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (750 bp):
GATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATATTATATTATTTCAATTAT
AACTTATATTTTTTGAAAGTAATTATATATTTTTTAATTTAATAATTTTTTTTAAGAATTTCTTA
ATAAATAAATATAATATATTTTATTTATACATACAACCAAATTTATGTCTTGCAGTAGATAAAAT
ACTAGAAGAGTTGATATTTGAATTGTTGATATACAAACATTCGTTAGTTACTGTCATCTCGTAGC
TGGTATGACTGCATTCAACACAAAATCGCACATCTCATTTGAAAAAAAGTTCAAGTATTAGGACT
TTCATTATTGAAGTTAAAAGTTACTTATTCTATGTTTTGACTACCCAGCCATGTGGATTGCATGT
GTGAAAATTTGTTGTATGTGCACAACTTTCAAAATGCTCCAAAGTTTTAATTTCTACTAGTTTTT
CACTCCTATTGCTCTCAAGTGCTCTGTTAAGCATCAAAACATGAATATAAATTATTAGAAGTATA
TAATTCACAATTAATGTCACATAATCACTGGAAATGCATTAAAAAAAGCTAAAATATTTTGACAA
TTATAACTAATGAACACTTTTATAATTTGAATTTAAATTAAGTTATAATCACGTTTTAATATATA
TTAAAAATCACTTTTGAAACACTTTATATATTTTTTTTTAAAAATTCTCTTCTCAGAGTTGACAA
AATATTTTTAAATTAAATTAAAAACAGTTCACATG
Found at i:4450717 original size:20 final size:19
Alignment explanation
Indices: 4450679--4450729 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 19
4450669 AATTATAACT
4450679 TATATTTTTTGAAAGTAATTA
1 TATATTTTTT-AAAGTAA-TA
**
4450700 TATATTTTTTAATTTAATA
1 TATATTTTTTAAAGTAATA
*
4450719 -ATTTTTTTTAA
1 TATATTTTTTAA
4450730 GAATTTCTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 10 0.37
19 2 0.07
20 5 0.19
21 10 0.37
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (19 bp):
TATATTTTTTAAAGTAATA
Found at i:4451474 original size:20 final size:19
Alignment explanation
Indices: 4451436--4451486 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 19
4451426 AATTATAACT
4451436 TATATTTTTTGAAAGTAATTA
1 TATATTTTTT-AAAGTAA-TA
**
4451457 TATATTTTTTAATTTAATA
1 TATATTTTTTAAAGTAATA
*
4451476 -ATTTTTTTTAA
1 TATATTTTTTAA
4451487 GAATTTCTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 10 0.37
19 2 0.07
20 5 0.19
21 10 0.37
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (19 bp):
TATATTTTTTAAAGTAATA
Found at i:4453331 original size:2 final size:2
Alignment explanation
Indices: 4453324--4453349 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4453314 GAATTATCAT
4453324 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
4453350 AACTATACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4464581 original size:27 final size:27
Alignment explanation
Indices: 4464543--4464596 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
4464533 GCTTGTGTAA
4464543 GATCTCCTTTTTCTAAAATTTCTAAAT
1 GATCTCCTTTTTCTAAAATTTCTAAAT
4464570 GATCTCCTTTTTCTAAAATTTCTAAAT
1 GATCTCCTTTTTCTAAAATTTCTAAAT
4464597 TAATCTTGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.04, T:0.48
Consensus pattern (27 bp):
GATCTCCTTTTTCTAAAATTTCTAAAT
Found at i:4465752 original size:22 final size:22
Alignment explanation
Indices: 4465726--4465767 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
4465716 ATCACATTAT
4465726 TTGTTATTCAGTAGTTTTACTG
1 TTGTTATTCAGTAGTTTTACTG
* *
4465748 TTGTTATTTAGTGGTTTTAC
1 TTGTTATTCAGTAGTTTTAC
4465768 CATATTGAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.07, G:0.19, T:0.57
Consensus pattern (22 bp):
TTGTTATTCAGTAGTTTTACTG
Found at i:4468275 original size:18 final size:21
Alignment explanation
Indices: 4468240--4468280 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 21
4468230 AAATATAAAA
*
4468240 TTTGAAATTTTTATAAAT-AT
1 TTTGAAATTTTGATAAATCAT
4468260 TTTG-AATTTTGA-AAATCAT
1 TTTGAAATTTTGATAAATCAT
4468279 TT
1 TT
4468281 ACAAAAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 4 0.21
19 11 0.58
20 4 0.21
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (21 bp):
TTTGAAATTTTGATAAATCAT
Found at i:4471353 original size:114 final size:114
Alignment explanation
Indices: 4471145--4471353 Score: 258
Period size: 114 Copynumber: 1.8 Consensus size: 114
4471135 AAAGCGTCAC
*
4471145 AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTTGGGGATTTAGCGGCATTTTTAAGAAA
1 AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGAAA
* * **** ** ****
4471210 GTGCCGCTAATGTTCAGGGCTTTTGCGACGTTTTTGAGAAAGCGCCGCA
66 GCGCCGCAAAAAAACAAAGCTCAAACGACGTTTTTGAGAAAGCGCCGCA
* * *
4471259 AAAAAACCTAAGCCCAACGATGCCGTTTTGTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAA
1 AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGAAA
4471324 GCGCCGCAAAAAAACATAAGC-CAAACGACG
66 GCGCCGCAAAAAAACA-AAGCTCAAACGACG
4471354 CCGTTTTATG
Statistics
Matches: 78, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
114 76 0.97
115 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (114 bp):
AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGAAA
GCGCCGCAAAAAAACAAAGCTCAAACGACGTTTTTGAGAAAGCGCCGCA
Found at i:4471357 original size:73 final size:73
Alignment explanation
Indices: 4471238--4471403 Score: 260
Period size: 73 Copynumber: 2.3 Consensus size: 73
4471228 GCTTTTGCGA
* * * * * *
4471238 CGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTGTGAGCTTTCGGGGA
1 CGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTATGAGCTTTCGAGGA
4471303 TTTAGCGG
66 TTTAGCGG
*
4471311 CGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTATGAGCTTTCGAGGC
1 CGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTATGAGCTTTCGAGGA
4471376 TTTAGCGG
66 TTTAGCGG
*
4471384 CGTTTTTAAGAAGGCGCCGC
1 CGTTTTTAAGAAAGCGCCGC
4471404 TAATGCTTAG
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 85 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (73 bp):
CGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTATGAGCTTTCGAGGA
TTTAGCGG
Found at i:4471421 original size:114 final size:114
Alignment explanation
Indices: 4471303--4471611 Score: 451
Period size: 114 Copynumber: 2.7 Consensus size: 114
4471293 CTTTCGGGGA
*
4471303 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTATGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
* * *
4471368 TTCGAGGCTTTAGCGGCGTTTTTAAGAAGGCGCCGCTAATGCTTAGGGC
66 TTCGAGGATTTAGCGGCGTTTTAAAGAAAGCGCCGCTAATGCTTAGGGC
* * * * * * * *
4471417 TTTAGCGGCGTGTTTGAGTAAGCGACGCAAAATAACCTAAGCCCAACGATGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
*
4471482 TTC-AGGGATTTAGTGGCGTTTTAAAGAAAGCGCCGCTAATGCTTAGGGC
66 TTCGA-GGATTTAGCGGCGTTTTAAAGAAAGCGCCGCTAATGCTTAGGGC
**
4471531 TTTAGCGGCGTTTTTAAGAAAGCGCCGC-AAAAAACATAAGTGAAACGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
*
4471595 TTCGGGGATTTAGCGGC
66 TTCGAGGATTTAGCGGC
4471612 CAAAAAAATA
Statistics
Matches: 168, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
113 45 0.27
114 123 0.73
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
TTCGAGGATTTAGCGGCGTTTTAAAGAAAGCGCCGCTAATGCTTAGGGC
Found at i:4471448 original size:187 final size:186
Alignment explanation
Indices: 4471118--4471517 Score: 570
Period size: 187 Copynumber: 2.1 Consensus size: 186
4471108 AAAATAAGCA
* * * * * *
4471118 TTAGCGGCGTTTTCCAA-AAAGCGTCACAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTT-AAAGAAAGCGCCGCAAAAAACATAAGCCAAACGACGCCGTTTTATGAGCTT
* * * * *
4471182 TTGGGGATTTAGCGGCATTTTTAAGAAAGTGCCGCTAATGTTCAGGGCTTTTGCGACGTTTTTGA
65 TCGAGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGTTCAGGGCTTTAGCGACGTGTTTGA
* *
4471247 GAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTGTGAGCTTTCGGGGAT
130 GAAAGCGACGCAAAAAAACCTAAGCCCAACGATGCCGTTTTGTGAGCTTTCAGGGAT
*
4471304 TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTATGAGCTT
1 TTAGCGGCGTTTTAAAGAAAGCGCCGC-AAAAAACATAAGCCAAACGACGCCGTTTTATGAGCTT
* * * *
4471369 TCGAGGCTTTAGCGGCGTTTTTAAGAAGGCGCCGCTAATGCTT-AGGGCTTTAGCGGCGTGTTTG
65 TCGAGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATG-TTCAGGGCTTTAGCGACGTGTTTG
* *
4471433 AGTAAGCGACGCAAAATAACCTAAGCCCAACGATGCCGTTTTGTGAGCTTTCAGGGAT
129 AGAAAGCGACGCAAAAAAACCTAAGCCCAACGATGCCGTTTTGTGAGCTTTCAGGGAT
*
4471491 TTAGTGGCGTTTTAAAGAAAGCGCCGC
1 TTAGCGGCGTTTTAAAGAAAGCGCCGC
4471518 TAATGCTTAG
Statistics
Matches: 190, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
185 2 0.01
186 21 0.11
187 165 0.87
188 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (186 bp):
TTAGCGGCGTTTTAAAGAAAGCGCCGCAAAAAACATAAGCCAAACGACGCCGTTTTATGAGCTTT
CGAGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGTTCAGGGCTTTAGCGACGTGTTTGAG
AAAGCGACGCAAAAAAACCTAAGCCCAACGATGCCGTTTTGTGAGCTTTCAGGGAT
Found at i:4471801 original size:14 final size:14
Alignment explanation
Indices: 4471764--4471812 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
4471754 TAAGGTCGGT
* *
4471764 TTAGGGAGTATGGGT
1 TTAGGGATTAT-GGA
*
4471779 TTAGAGATTATGGA
1 TTAGGGATTATGGA
*
4471793 TTAGGGATTATAGA
1 TTAGGGATTATGGA
4471807 TTAGGG
1 TTAGGG
4471813 GTTGGGATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 20 0.69
15 9 0.31
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (14 bp):
TTAGGGATTATGGA
Found at i:4471843 original size:8 final size:7
Alignment explanation
Indices: 4471828--4471861 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 7
4471818 GATTTAAGGT
4471828 TTAGGGG
1 TTAGGGG
4471835 TTAGAGGG
1 TTAG-GGG
4471843 TTAGGGG
1 TTAGGGG
4471850 TTTAGGGG
1 -TTAGGGG
4471858 TTAG
1 TTAG
4471862 ACGTGCTAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:4471848 original size:15 final size:15
Alignment explanation
Indices: 4471807--4471861 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
4471797 GGATTATAGA
*
4471807 TTAGGGGTT-GGGAT
1 TTAGGGGTTAGGGGT
* *
4471821 TTAAGGTTTAGGGG-
1 TTAGGGGTTAGGGGT
4471835 TTAGAGGGTTAGGGGT
1 TTAG-GGGTTAGGGGT
4471851 TTAGGGGTTAG
1 TTAGGGGTTAG
4471862 ACGTGCTAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 10 0.30
15 19 0.58
16 4 0.12
ACGTcount: A:0.18, C:0.00, G:0.47, T:0.35
Consensus pattern (15 bp):
TTAGGGGTTAGGGGT
Found at i:4472082 original size:15 final size:14
Alignment explanation
Indices: 4472060--4472094 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
4472050 CATATTTTAA
4472060 GGTTTAGGGAGTAT
1 GGTTTAGGGAGTAT
*
4472074 GGATTTAGGGATTAT
1 GG-TTTAGGGAGTAT
4472089 GGTTTA
1 GGTTTA
4472095 AGTGTTGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (14 bp):
GGTTTAGGGAGTAT
Found at i:4472115 original size:21 final size:20
Alignment explanation
Indices: 4472081--4472124 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
4472071 TATGGATTTA
* *
4472081 GGGATTATGGTTTAAGTGTT
1 GGGATTAAGGTTTAAGGGTT
*
4472101 GGGATTTAAGGTTTAGGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
4472122 GGG
1 GGG
4472125 GGTTTAGGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.39
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:4472129 original size:277 final size:279
Alignment explanation
Indices: 4471683--4472283 Score: 693
Period size: 297 Copynumber: 2.1 Consensus size: 279
4471673 ATTATTTAAA
* * * *
4471683 ATAATTGAAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTGGTTTAGGGTATATGATTTATCT
1 ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAAGGTATATGATTAATCT
** * * *
4471748 AAGATTTAAGGTCGGTTTAGGGAGTATGGGTTTAGAGATTATGGATTAGGGATTATAGATTAGGG
66 AAGATTTAAGACCGGTTTAGGGAGTATAGGTTTAGAGAGTATGGATTAGGGATTATAGATTAAGG
*
4471813 GTTGGGATTTAAGGTTTAGGGGTTAGAGGGTTAGGGGTTTAGGGGTTAGA-CG-TGCTA-GG-G-
131 GTTGGGATTTAAGGTTTAGGGGTT----GG-T-GGGGTTTAGGGGTTAGATAGATGCTAGGGAGA
* *
4471873 GTTA-A-AAGG-TAGGGATTTAGGGGTCGAGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTTA
190 GTTAGATAAGGTTAGGGATTTAGGGGTCGAGTTAAGGTTTTGAGTTTAGATTAATTATTTTTTTA
4471935 ATTTATATTTTAAATATGTTCTTAT
255 ATTTATATTTTAAATATGTTCTTAT
* *
4471960 ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAAGGTATGTGATTAATTT
1 ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAAGGTATATGATTAATCT
* * *
4472025 AATATTTAATACCGGTTTA-GGAGTTCATATTTTAAGGTTTAGGGAGTATGGATTTAGGGATTAT
66 AAGATTTAAGACCGGTTTAGGGAG----TA---T-AGGTTTAGAGAGTATGGA-TTAGGGATTAT
* * * *
4472089 GGTTTAAGTGTTGGGATTTAAGGTTTAGGGGTT-G-GGGGTTTAGGGGTTAGATGTTAGATGTTA
122 AGATTAAGGGTTGGGATTTAAGGTTTAGGGGTTGGTGGGGTTTAGGGGTTAGA---TAGATGCTA
4472152 GGGGTTAAGAGTTAGGGATTTAAGGTTTAGGGATTTAGGGGTCGAGTTAAGGTTTTGAGTTTAGA
184 -GGG---AGAGTTA--GA--TAAGG-TTAGGGATTTAGGGGTCGAGTTAAGGTTTTGAGTTTAGA
4472217 TTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTAT
240 TTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTAT
4472257 ATAATTGTAAAAGAGATAATAATAAAT
1 ATAATTGTAAAAGAGATAATAATAAAT
4472284 CAAATATATT
Statistics
Matches: 274, Mismatches: 21, Indels: 38
0.82 0.06 0.11
Matches are distributed among these distances:
276 4 0.01
277 91 0.33
280 3 0.01
281 1 0.00
282 4 0.01
283 1 0.00
284 17 0.06
285 40 0.15
288 1 0.00
289 4 0.01
292 1 0.00
295 4 0.01
297 103 0.38
ACGTcount: A:0.29, C:0.02, G:0.28, T:0.41
Consensus pattern (279 bp):
ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAAGGTATATGATTAATCT
AAGATTTAAGACCGGTTTAGGGAGTATAGGTTTAGAGAGTATGGATTAGGGATTATAGATTAAGG
GTTGGGATTTAAGGTTTAGGGGTTGGTGGGGTTTAGGGGTTAGATAGATGCTAGGGAGAGTTAGA
TAAGGTTAGGGATTTAGGGGTCGAGTTAAGGTTTTGAGTTTAGATTAATTATTTTTTTAATTTAT
ATTTTAAATATGTTCTTAT
Found at i:4472957 original size:150 final size:147
Alignment explanation
Indices: 4472623--4472980 Score: 612
Period size: 150 Copynumber: 2.4 Consensus size: 147
4472613 AATTTTTAGA
* * *
4472623 ATAGCAAAATGGCGTAGTTTTGTTCAAAATGAATTTTTTTGCGGCGTTTATATGAAAAACGCCGC
1 ATAGCAAAACGGTGTAGTTTTGTTCAAAATGAATTTTTTTGCGGCGTTTTTATGAAAAACGCCGC
*
4472688 TAAAGGTAAGCAATAGCGGCGTTTTTATAAAAAACGCCACAAAATAATTTTACTTTTAAAAATAG
66 TAAAGGTAAGCAATAGCGGCGTTTTTATAAAAAACGCCACAAAATAATTTCACTTTTAAAAATAG
4472753 CCCCCTTTTAGCATAAC
131 CCCCCTTTTAGCATAAC
4472770 ATAGCAAAACGGTGTAGTTTTGTTCAAAAT-AATTTTTTTTGCGGCGTTTTTTATGAAAAACGCC
1 ATAGCAAAACGGTGTAGTTTTGTTCAAAATGAA-TTTTTTTGCGGCG-TTTTTATGAAAAACGCC
4472834 GCTAAAGGTAAGCAATAGCGGCGTTTTTTATAAAAAAACGCCACAAAATAATTTCACTTTTAAAA
64 GCTAAAGGTAAGCAATAGCGGCG-TTTTTAT-AAAAAACGCCACAAAATAATTTCACTTTT-AAA
*
4472899 AATAGCCCCCTTTTAGCATAGC
126 AATAGCCCCCTTTTAGCATAAC
4472921 ATAGCAAAACGGTGTAG-TTTGTTCAAAATGAATTTTTTTGCGGCGTTTTTATGAAAAACG
1 ATAGCAAAACGGTGTAGTTTTGTTCAAAATGAATTTTTTTGCGGCGTTTTTATGAAAAACG
4472981 TTATATCGAA
Statistics
Matches: 200, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
146 2 0.01
147 41 0.20
148 39 0.19
149 22 0.11
150 53 0.26
151 43 0.22
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (147 bp):
ATAGCAAAACGGTGTAGTTTTGTTCAAAATGAATTTTTTTGCGGCGTTTTTATGAAAAACGCCGC
TAAAGGTAAGCAATAGCGGCGTTTTTATAAAAAACGCCACAAAATAATTTCACTTTTAAAAATAG
CCCCCTTTTAGCATAAC
Found at i:4475679 original size:23 final size:23
Alignment explanation
Indices: 4475653--4475782 Score: 174
Period size: 23 Copynumber: 5.7 Consensus size: 23
4475643 TCACCTACTG
*
4475653 AACACAACCAAACATAGCCTCCA
1 AACACAACCAAATATAGCCTCCA
*
4475676 AACACAACCAAATATACCCTCCA
1 AACACAACCAAATATAGCCTCCA
4475699 AACACAACCAAATATAGCCTCC-
1 AACACAACCAAATATAGCCTCCA
* *
4475721 AATACAACCACATATA-CCTTCCA
1 AACACAACCAAATATAGCC-TCCA
* *
4475744 AACACAACCAAATATAGCTTCCC
1 AACACAACCAAATATAGCCTCCA
*
4475767 AACATAACCAAATATA
1 AACACAACCAAATATA
4475783 CAACCAAATA
Statistics
Matches: 94, Mismatches: 10, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
21 2 0.02
22 17 0.18
23 74 0.79
24 1 0.01
ACGTcount: A:0.48, C:0.35, G:0.02, T:0.15
Consensus pattern (23 bp):
AACACAACCAAATATAGCCTCCA
Found at i:4475744 original size:45 final size:46
Alignment explanation
Indices: 4475653--4475783 Score: 192
Period size: 45 Copynumber: 2.9 Consensus size: 46
4475643 TCACCTACTG
*
4475653 AACACAACCAAACATAGCCTCCAAACACAACCAAATATACCCTCCA
1 AACACAACCAAATATAGCCTCCAAACACAACCAAATATACCCTCCA
* * *
4475699 AACACAACCAAATATAGCCTCC-AATACAACCACATATACCTTCCA
1 AACACAACCAAATATAGCCTCCAAACACAACCAAATATACCCTCCA
* * *
4475744 AACACAACCAAATATAGCTTCCCAACATAACCAAATATAC
1 AACACAACCAAATATAGCCTCCAAACACAACCAAATATAC
4475784 AACCAAATAT
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
45 41 0.54
46 35 0.46
ACGTcount: A:0.47, C:0.35, G:0.02, T:0.15
Consensus pattern (46 bp):
AACACAACCAAATATAGCCTCCAAACACAACCAAATATACCCTCCA
Found at i:4475928 original size:13 final size:13
Alignment explanation
Indices: 4475910--4475938 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
4475900 CAACCATAAA
4475910 CATATAACATTTT
1 CATATAACATTTT
4475923 CATATAACATTTT
1 CATATAACATTTT
4475936 CAT
1 CAT
4475939 TGTCATCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (13 bp):
CATATAACATTTT
Found at i:4480628 original size:23 final size:23
Alignment explanation
Indices: 4480597--4480770 Score: 169
Period size: 23 Copynumber: 7.7 Consensus size: 23
4480587 TCACCCACTG
* *
4480597 AACAGAACCAAACATAGCCTCCA
1 AACACAACCAAATATAGCCTCCA
* *
4480620 AACACAACC-AATTTA-CACTCAA
1 AACACAACCAAATATAGC-CTCCA
*
4480642 AACACAACCAAACATA-CCTTCC-
1 AACACAACCAAATATAGCC-TCCA
* *
4480664 AACACAACCAAATATACCCTACA
1 AACACAACCAAATATAGCCTCCA
* *
4480687 AACACAACCAAATATAGTCTCCC
1 AACACAACCAAATATAGCCTCCA
* * **
4480710 AACACAACCAAAAATATCAACCA
1 AACACAACCAAATATAGCCTCCA
*
4480733 AACACAACCAAATATAGCCTCCC
1 AACACAACCAAATATAGCCTCCA
4480756 AACACAA-CAAATATA
1 AACACAACCAAATATA
4480771 CAACCAAATA
Statistics
Matches: 122, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
21 1 0.01
22 43 0.35
23 78 0.64
ACGTcount: A:0.51, C:0.34, G:0.02, T:0.13
Consensus pattern (23 bp):
AACACAACCAAATATAGCCTCCA
Found at i:4480720 original size:46 final size:46
Alignment explanation
Indices: 4480597--4480772 Score: 202
Period size: 46 Copynumber: 3.9 Consensus size: 46
4480587 TCACCCACTG
* * *
4480597 AACAGAACCAAACATAGCCTCCAAACACAACC-AATTTACACT-CAA
1 AACACAACCAAACATAGCCTCCCAACACAACCAAATATACACTAC-A
* *
4480642 AACACAACCAAACATA-CCTTCCAACACAACCAAATATACCCTACA
1 AACACAACCAAACATAGCCTCCCAACACAACCAAATATACACTACA
* * *
4480687 AACACAACCAAATATAGTCTCCCAACACAACCAAAAATATCA--ACCA
1 AACACAACCAAACATAGCCTCCCAACACAACCAAATATA-CACTA-CA
*
4480733 AACACAACCAAATATAGCCTCCCAACACAA-CAAATATACA
1 AACACAACCAAACATAGCCTCCCAACACAACCAAATATACA
4480773 ACCAAATATA
Statistics
Matches: 114, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
44 15 0.13
45 47 0.41
46 51 0.45
47 1 0.01
ACGTcount: A:0.51, C:0.34, G:0.02, T:0.13
Consensus pattern (46 bp):
AACACAACCAAACATAGCCTCCCAACACAACCAAATATACACTACA
Found at i:4487199 original size:35 final size:35
Alignment explanation
Indices: 4487153--4487222 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
4487143 ACTTATGGTA
4487153 GAAAGAAATGGTCAAATAGTATATGAGATGTATGT
1 GAAAGAAATGGTCAAATAGTATATGAGATGTATGT
*
4487188 GAAAGAAATGGTCAAATAGTATGTGAGATGTATGT
1 GAAAGAAATGGTCAAATAGTATATGAGATGTATGT
4487223 TTAAGGTTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.41, C:0.03, G:0.27, T:0.29
Consensus pattern (35 bp):
GAAAGAAATGGTCAAATAGTATATGAGATGTATGT
Found at i:4490992 original size:5 final size:5
Alignment explanation
Indices: 4490982--4491009 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
4490972 CACTAACTCC
4490982 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
4491010 GCATCAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:4493455 original size:62 final size:62
Alignment explanation
Indices: 4493379--4493502 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
4493369 AGCTTCTGTT
*
4493379 AGTTCTGTCCCTCCTCGGTGCCTCTTCCTTTTCCGGGTAAAAGATAGGGCTATTCAAAGCAA
1 AGTTCTGTCCCTCCTCAGTGCCTCTTCCTTTTCCGGGTAAAAGATAGGGCTATTCAAAGCAA
4493441 AGTTCTGTCCCTCCTCAGTGCCTCTTCCTTTTCCGGGTAAAAGATAGGGCTATTCAAAGCAA
1 AGTTCTGTCCCTCCTCAGTGCCTCTTCCTTTTCCGGGTAAAAGATAGGGCTATTCAAAGCAA
4493503 TCTAACCAAG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (62 bp):
AGTTCTGTCCCTCCTCAGTGCCTCTTCCTTTTCCGGGTAAAAGATAGGGCTATTCAAAGCAA
Found at i:4495967 original size:23 final size:23
Alignment explanation
Indices: 4495933--4496062 Score: 165
Period size: 23 Copynumber: 5.7 Consensus size: 23
4495923 TCACCCACTG
*
4495933 AACACAACCAAACATAGCCTCCA
1 AACACAACCAAATATAGCCTCCA
* *
4495956 AACACAAACAAATATACCCTCCA
1 AACACAACCAAATATAGCCTCCA
*
4495979 AACACAACCAAATATAGCCT-CT
1 AACACAACCAAATATAGCCTCCA
*
4496001 AATACAACCAAATATA-CCTTCCA
1 AACACAACCAAATATAGCC-TCCA
* *
4496024 AACACAACCAAATATAGCTTCCC
1 AACACAACCAAATATAGCCTCCA
*
4496047 AACATAACCAAATATA
1 AACACAACCAAATATA
4496063 CAACCAAATA
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
21 2 0.02
22 17 0.18
23 72 0.78
24 1 0.01
ACGTcount: A:0.49, C:0.32, G:0.02, T:0.16
Consensus pattern (23 bp):
AACACAACCAAATATAGCCTCCA
Found at i:4496026 original size:68 final size:68
Alignment explanation
Indices: 4495936--4496062 Score: 184
Period size: 68 Copynumber: 1.9 Consensus size: 68
4495926 CCCACTGAAC
4495936 ACAACCAAACATAGCCTCCAAACACAAACAAATATACCCTCCAAACACAACCAAATATAGCCTCT
1 ACAACCAAACATAGCCTCCAAACACAAACAAATATACCCTCCAAACACAACCAAATATAGCCTCT
4496001 AAT
66 AAT
* * * * * *
4496004 ACAACCAAATATA-CCTTCCAAACACAACCAAATATAGCTTCCCAACATAACCAAATATA
1 ACAACCAAACATAGCC-TCCAAACACAAACAAATATACCCTCCAAACACAACCAAATATA
4496063 CAACCAAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
67 2 0.04
68 50 0.96
ACGTcount: A:0.49, C:0.32, G:0.02, T:0.17
Consensus pattern (68 bp):
ACAACCAAACATAGCCTCCAAACACAAACAAATATACCCTCCAAACACAACCAAATATAGCCTCT
AAT
Found at i:4496070 original size:45 final size:46
Alignment explanation
Indices: 4495933--4496063 Score: 174
Period size: 45 Copynumber: 2.9 Consensus size: 46
4495923 TCACCCACTG
* * *
4495933 AACACAACCAAACATAGCCTCCAAACACAAACAAATATACCCTCCA
1 AACACAACCAAATATAGCCTCCAAACACAACCAAATATACCATCCA
* * *
4495979 AACACAACCAAATATAGCCT-CTAATACAACCAAATATACCTTCCA
1 AACACAACCAAATATAGCCTCCAAACACAACCAAATATACCATCCA
* * *
4496024 AACACAACCAAATATAGCTTCCCAACATAACCAAATATAC
1 AACACAACCAAATATAGCCTCCAAACACAACCAAATATAC
4496064 AACCAAATAT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
45 40 0.53
46 35 0.47
ACGTcount: A:0.49, C:0.33, G:0.02, T:0.16
Consensus pattern (46 bp):
AACACAACCAAATATAGCCTCCAAACACAACCAAATATACCATCCA
Found at i:4496208 original size:13 final size:13
Alignment explanation
Indices: 4496190--4496218 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
4496180 CAACCATAAA
4496190 CATATAACATTTT
1 CATATAACATTTT
4496203 CATATAACATTTT
1 CATATAACATTTT
4496216 CAT
1 CAT
4496219 TGTCATCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (13 bp):
CATATAACATTTT
Found at i:4500906 original size:23 final size:23
Alignment explanation
Indices: 4500874--4501048 Score: 171
Period size: 23 Copynumber: 7.7 Consensus size: 23
4500864 ATCACCCACT
* *
4500874 AAACAGAACCAAACATAGCCTCC
1 AAACACAACCAAATATAGCCTCC
* *
4500897 AAACACAACC-AATTTA-CACTCA
1 AAACACAACCAAATATAGC-CTCC
*
4500919 AAACACAACCAAACATA-CCTTCC
1 AAACACAACCAAATATAGCC-TCC
* *
4500942 -AACACAACCAAATATACCCTTC
1 AAACACAACCAAATATAGCCTCC
*
4500964 AAACACAACCAAATATAGTCTCC
1 AAACACAACCAAATATAGCCTCC
* * * **
4500987 CAACACAACCAAAAATATCAACC
1 AAACACAACCAAATATAGCCTCC
4501010 AAACACAACCAAATATAGCCTCC
1 AAACACAACCAAATATAGCCTCC
*
4501033 CAACACAA-CAAATATA
1 AAACACAACCAAATATA
4501049 CAACCAAATA
Statistics
Matches: 123, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
21 1 0.01
22 43 0.35
23 79 0.64
ACGTcount: A:0.50, C:0.34, G:0.02, T:0.14
Consensus pattern (23 bp):
AAACACAACCAAATATAGCCTCC
Found at i:4500993 original size:46 final size:45
Alignment explanation
Indices: 4500874--4501049 Score: 198
Period size: 46 Copynumber: 3.9 Consensus size: 45
4500864 ATCACCCACT
* * * *
4500874 AAACAGAACCAAACATAGCCTCCAAACACAACC-AATTTACACTC
1 AAACACAACCAAACATAGCCTCCCAACACAACCAAATATACCCTC
*
4500918 AAAACACAACCAAACATA-CCTTCCAACACAACCAAATATACCCTTC
1 -AAACACAACCAAACATAGCCTCCCAACACAACCAAATATACCC-TC
* * * *
4500964 AAACACAACCAAATATAGTCTCCCAACACAACCAAAAATATCAAC-C
1 AAACACAACCAAACATAGCCTCCCAACACAACCAAATATA-C-CCTC
*
4501010 AAACACAACCAAATATAGCCTCCCAACACAA-CAAATATAC
1 AAACACAACCAAACATAGCCTCCCAACACAACCAAATATAC
4501050 AACCAAATAT
Statistics
Matches: 114, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
44 14 0.12
45 46 0.40
46 52 0.46
47 1 0.01
48 1 0.01
ACGTcount: A:0.50, C:0.34, G:0.02, T:0.14
Consensus pattern (45 bp):
AAACACAACCAAACATAGCCTCCCAACACAACCAAATATACCCTC
Found at i:4512490 original size:27 final size:26
Alignment explanation
Indices: 4512460--4512699 Score: 250
Period size: 27 Copynumber: 8.9 Consensus size: 26
4512450 TCTCGAAGGG
*
4512460 TGAAATACCCTCAAAGGCTAAAATGAC
1 TGAAATACCC-CAAAGGGTAAAATGAC
*
4512487 TGAAATACCCCTGAAGGGTAAAATGAC
1 TGAAATACCCC-AAAGGGTAAAATGAC
**
4512514 TGAAATACCCTTGAAGGGTAAAATGA-
1 TGAAATACCC-CAAAGGGTAAAATGAC
*
4512540 TCGAAATACCCCGAAGGGTAAAATGAC
1 T-GAAATACCCCAAAGGGTAAAATGAC
*
4512567 TAAAATACCCCAAAAAAGGGTAAAATGAC
1 TGAAATACCCC---AAAGGGTAAAATGAC
* *
4512596 TGAAATATCCCAAAATGGTAAAATGAC
1 TGAAATA-CCCCAAAGGGTAAAATGAC
*
4512623 CGAAATACCCTCGAAA-GGTAAAATGAC
1 TGAAATACCC-C-AAAGGGTAAAATGAC
* **
4512650 CGAAATACCCCCAAAATGTAAAATGAC
1 TGAAATA-CCCCAAAGGGTAAAATGAC
*
4512677 TGAAATACCCCGAAGGGTAAAAT
1 TGAAATACCCCAAAGGGTAAAAT
4512700 AATTGTTATA
Statistics
Matches: 185, Mismatches: 16, Indels: 25
0.82 0.07 0.11
Matches are distributed among these distances:
26 44 0.24
27 112 0.61
28 6 0.03
29 20 0.11
30 3 0.02
ACGTcount: A:0.45, C:0.19, G:0.18, T:0.17
Consensus pattern (26 bp):
TGAAATACCCCAAAGGGTAAAATGAC
Found at i:4515456 original size:29 final size:29
Alignment explanation
Indices: 4515414--4515502 Score: 124
Period size: 29 Copynumber: 3.1 Consensus size: 29
4515404 TGTGCTAAGC
4515414 GATGGTTGAAACCATCCCTTTTCATATTT
1 GATGGTTGAAACCATCCCTTTTCATATTT
** *
4515443 GATGGTTGTCACCATCCCTTTTCATATTC
1 GATGGTTGAAACCATCCCTTTTCATATTT
* * *
4515472 GATGGTCGAAACCATCCATTTTCATAGTT
1 GATGGTTGAAACCATCCCTTTTCATATTT
4515501 GA
1 GA
4515503 CACCATCCTT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (29 bp):
GATGGTTGAAACCATCCCTTTTCATATTT
Found at i:4517348 original size:21 final size:22
Alignment explanation
Indices: 4517318--4517358 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
4517308 ATCCCAAACA
*
4517318 AAATTTAAAAAAAAA-AACTAC
1 AAATTAAAAAAAAAATAACTAC
4517339 AAATTAAAAAAAAAATAACT
1 AAATTAAAAAAAAAATAACT
4517359 TCAATGTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (22 bp):
AAATTAAAAAAAAAATAACTAC
Found at i:4518009 original size:30 final size:30
Alignment explanation
Indices: 4517969--4518041 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
4517959 ATGGCCTAGG
* ** * *
4517969 ACACACCCATGTGTCTAGGCTATGTGCAGC
1 ACACAACCATGTCACTAGGCTATGTACACC
4517999 ACACAACCATGTCACTAGGCTATGTACACC
1 ACACAACCATGTCACTAGGCTATGTACACC
4518029 ACACAACCATGTC
1 ACACAACCATGTC
4518042 GCCAGGCCGT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (30 bp):
ACACAACCATGTCACTAGGCTATGTACACC
Found at i:4519153 original size:18 final size:18
Alignment explanation
Indices: 4519126--4519167 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
4519116 CTAATTGAAC
*
4519126 ATTT-TATAAGATATTAG
1 ATTTATATAAGACATTAG
4519143 ATTTATATAAGACATTAG
1 ATTTATATAAGACATTAG
4519161 ATTTATA
1 ATTTATA
4519168 CTAGGACACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.43, C:0.02, G:0.10, T:0.45
Consensus pattern (18 bp):
ATTTATATAAGACATTAG
Found at i:4520432 original size:22 final size:22
Alignment explanation
Indices: 4520407--4520460 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
4520397 ATGTTTCTAT
4520407 CTTGGAGGGGAAATTCAAGCCA
1 CTTGGAGGGGAAATTCAAGCCA
4520429 CTTGGAGGGGAAATTCAAGCCA
1 CTTGGAGGGGAAATTCAAGCCA
*
4520451 CTTGAAGGGG
1 CTTGGAGGGG
4520461 GTTGTGGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.30, C:0.17, G:0.35, T:0.19
Consensus pattern (22 bp):
CTTGGAGGGGAAATTCAAGCCA
Found at i:4521148 original size:18 final size:18
Alignment explanation
Indices: 4521116--4521164 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
4521106 AAAGTGATCA
*
4521116 AAAAAATAT-AGAAAAA-
1 AAAAAATATGAAAAAAAT
*
4521132 AGAAAATATGAAAAAAAT
1 AAAAAATATGAAAAAAAT
*
4521150 AAAAAATATTAAAAA
1 AAAAAATATGAAAAA
4521165 TATTCTGTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 8 0.30
17 6 0.22
18 13 0.48
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (18 bp):
AAAAAATATGAAAAAAAT
Found at i:4521153 original size:16 final size:16
Alignment explanation
Indices: 4521118--4521147 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4521108 AGTGATCAAA
4521118 AAAATATAGAAAAAAG
1 AAAATATAGAAAAAAG
4521134 AAAATAT-GAAAAAA
1 AAAATATAGAAAAAA
4521148 ATAAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (16 bp):
AAAATATAGAAAAAAG
Found at i:4522434 original size:17 final size:17
Alignment explanation
Indices: 4522412--4522452 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
4522402 TAGTACACAA
4522412 GGCAATTAAGATTGAGC
1 GGCAATTAAGATTGAGC
*
4522429 GGCAATTGAGATTGAGC
1 GGCAATTAAGATTGAGC
*
4522446 AGCAATT
1 GGCAATT
4522453 TCAACAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.24
Consensus pattern (17 bp):
GGCAATTAAGATTGAGC
Found at i:4523446 original size:20 final size:20
Alignment explanation
Indices: 4523421--4523460 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
4523411 TTTTATAGGT
*
4523421 TTATTTCCTCTTGCAACAAA
1 TTATTTCATCTTGCAACAAA
*
4523441 TTATTTTATCTTGCAACAAA
1 TTATTTCATCTTGCAACAAA
4523461 ATTTTCTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (20 bp):
TTATTTCATCTTGCAACAAA
Found at i:4523470 original size:20 final size:20
Alignment explanation
Indices: 4523429--4523472 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
4523419 GTTTATTTCC
*
4523429 TCTTGCAACAAATTATTTTA
1 TCTTGCAACAAATTATTCTA
4523449 TCTTGCAACAAAATT-TTCTA
1 TCTTGCAAC-AAATTATTCTA
4523469 TCTT
1 TCTT
4523473 AACCTTTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (20 bp):
TCTTGCAACAAATTATTCTA
Found at i:4528321 original size:3 final size:3
Alignment explanation
Indices: 4528313--4528361 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
4528303 TTGGTTTCTT
4528313 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4528361 T
1 T
4528362 CTTTTAAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:4528689 original size:23 final size:23
Alignment explanation
Indices: 4528659--4528704 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
4528649 TTATTTATAG
4528659 CACCAAACATGAGAAAAAAATGT
1 CACCAAACATGAGAAAAAAATGT
4528682 CACCAAACATGAGAAAAAAATGT
1 CACCAAACATGAGAAAAAAATGT
4528705 TGGTATAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.17, G:0.13, T:0.13
Consensus pattern (23 bp):
CACCAAACATGAGAAAAAAATGT
Found at i:4529103 original size:25 final size:26
Alignment explanation
Indices: 4529075--4529129 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
4529065 AACAATTCCT
*
4529075 CAAGGAAGC-TCTTTGTCCATGTGGA
1 CAAGGAAGCGTCTTTGTCCACGTGGA
*
4529100 CAAGGAAGCGTTTTTTGTCCACGTGGA
1 CAAGGAAGCG-TCTTTGTCCACGTGGA
4529127 CAA
1 CAA
4529130 AGTGCTTCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 9 0.35
27 17 0.65
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CAAGGAAGCGTCTTTGTCCACGTGGA
Found at i:4529457 original size:97 final size:96
Alignment explanation
Indices: 4529269--4529534 Score: 453
Period size: 97 Copynumber: 2.8 Consensus size: 96
4529259 GTTTCTTAAT
*
4529269 TAAATTAATTATAAATTTAAAAAAAATTAGATTAGGGTTTAGTGTTTATGG-TTTTAAGGAAAAA
1 TAAATTAATTATAAATTTAAAAAAAATTAGATTAGGGTTTAGTGTTTAAGGTTTTTAAGGAAAAA
* *
4529333 TTAAATAAATTAGGGTTTAAGGTTACTTGAG
66 TCAAATAAATTAGGGTTTAAAGTTACTTGAG
*
4529364 TAAATTAATTATAAATTTAAAAAAAATTAGATTAGAGTTTAGTGTTTAAGGTTTTTAAGGAAAAA
1 TAAATTAATTATAAATTTAAAAAAAATTAGATTAGGGTTTAGTGTTTAAGGTTTTTAAGG-AAAA
4529429 ATCAAATAAATTAGGGTTTAAAGTTACTTGAG
65 ATCAAATAAATTAGGGTTTAAAGTTACTTGAG
* * *
4529461 TAAATTAATTATAAATTTTAAAAAAATTAGATTAGGGTTTAGTATTTAGGGTTTTTAAGGAAAAA
1 TAAATTAATTATAAATTTAAAAAAAATTAGATTAGGGTTTAGTGTTTAAGGTTTTTAAGGAAAAA
4529526 TCAAATAAA
66 TCAAATAAA
4529535 ACTAGTTGTT
Statistics
Matches: 161, Mismatches: 8, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
95 49 0.30
96 22 0.14
97 90 0.56
ACGTcount: A:0.45, C:0.02, G:0.16, T:0.38
Consensus pattern (96 bp):
TAAATTAATTATAAATTTAAAAAAAATTAGATTAGGGTTTAGTGTTTAAGGTTTTTAAGGAAAAA
TCAAATAAATTAGGGTTTAAAGTTACTTGAG
Found at i:4540134 original size:43 final size:43
Alignment explanation
Indices: 4540071--4540340 Score: 162
Period size: 43 Copynumber: 6.3 Consensus size: 43
4540061 TTTTTCACAT
*
4540071 AAACGCCGCTAAAAAACATGACATTTAGCCGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACATTTAGCCGCGCTTTTATCAC
* * * * ** *
4540114 AAACGCCGCTAAAGATCATGACCTTTAGCGGCG-TTTAAAAAG
1 AAACGCCGCTAAAGAACATGACATTTAGCCGCGCTTTTATCAC
* * * * * ** *
4540156 AAGCGCAC-C--ATG-TCGCT-A-ATTTTGGTG-GCAATTTTTTCAC
1 AAACGC-CGCTAAAGAAC-ATGACATTTAGCCGCGC--TTTTATCAC
*
4540196 ATAAACGCCGCTAAAAAACATGACATTTAGCCGCGCTTTTATCAC
1 A--AACGCCGCTAAAGAACATGACATTTAGCCGCGCTTTTATCAC
* * * * *
4540241 AATCGCCACTAAAGAACATGACCTTTAGCGGCGTTTTTTATCAC
1 AAACGCCGCTAAAGAACATGACATTTAGCCGCG-CTTTTATCAC
* * * * *
4540285 AAACACCGCTAAATAACATGACCTTTAG-CGACACTTTTTTCAC
1 AAACGCCGCTAAAGAACATGACATTTAGCCG-CGCTTTTATCAC
4540328 AAACGCCGCTAAA
1 AAACGCCGCTAAA
4540341 AGTATCGTTC
Statistics
Matches: 167, Mismatches: 44, Indels: 32
0.69 0.18 0.13
Matches are distributed among these distances:
37 1 0.01
38 5 0.03
39 3 0.02
40 8 0.05
41 1 0.01
42 16 0.10
43 78 0.47
44 36 0.22
45 11 0.07
46 6 0.04
47 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACATTTAGCCGCGCTTTTATCAC
Found at i:4540261 original size:127 final size:127
Alignment explanation
Indices: 4540034--4540276 Score: 459
Period size: 127 Copynumber: 1.9 Consensus size: 127
4540024 TGCCGCTATA
4540034 CACCATGTCGCTAATTTTGGTGGCAATTTTTTCACATAAACGCCGCTAAAAAACATGACATTTAG
1 CACCATGTCGCTAATTTTGGTGGCAATTTTTTCACATAAACGCCGCTAAAAAACATGACATTTAG
* *
4540099 CCGCGCTTTTATCACAAACGCCGCTAAAGATCATGACCTTTAGCGGCGTTTAAAAAGAAGCG
66 CCGCGCTTTTATCACAAACGCCACTAAAGAACATGACCTTTAGCGGCGTTTAAAAAGAAGCG
4540161 CACCATGTCGCTAATTTTGGTGGCAATTTTTTCACATAAACGCCGCTAAAAAACATGACATTTAG
1 CACCATGTCGCTAATTTTGGTGGCAATTTTTTCACATAAACGCCGCTAAAAAACATGACATTTAG
*
4540226 CCGCGCTTTTATCACAATCGCCACTAAAGAACATGACCTTTAGCGGCGTTT
66 CCGCGCTTTTATCACAAACGCCACTAAAGAACATGACCTTTAGCGGCGTTT
4540277 TTTATCACAA
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
127 113 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (127 bp):
CACCATGTCGCTAATTTTGGTGGCAATTTTTTCACATAAACGCCGCTAAAAAACATGACATTTAG
CCGCGCTTTTATCACAAACGCCACTAAAGAACATGACCTTTAGCGGCGTTTAAAAAGAAGCG
Found at i:4540282 original size:44 final size:43
Alignment explanation
Indices: 4540198--4540341 Score: 173
Period size: 43 Copynumber: 3.3 Consensus size: 43
4540188 TTTTTCACAT
* * *
4540198 AAACGCCGCTAAAAAACATGACATTTAGCCGCGCTTTTATCAC
1 AAACGCCGCTAAAAAACATGACCTTTAGCGGCGTTTTTATCAC
* * *
4540241 AATCGCCACTAAAGAACATGACCTTTAGCGGCGTTTTTTATCAC
1 AAACGCCGCTAAAAAACATGACCTTTAGCGGCG-TTTTTATCAC
* * * *
4540285 AAACACCGCTAAATAACATGACCTTTAGCGACACTTTTT-TCAC
1 AAACGCCGCTAAAAAACATGACCTTTAGCGGC-GTTTTTATCAC
4540328 AAACGCCGCTAAAA
1 AAACGCCGCTAAAA
4540342 GTATCGTTCT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
43 44 0.52
44 41 0.48
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAAAACATGACCTTTAGCGGCGTTTTTATCAC
Found at i:4551029 original size:18 final size:18
Alignment explanation
Indices: 4551006--4551040 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4550996 TTGAATCATA
4551006 TTTTATAATTATTAATAT
1 TTTTATAATTATTAATAT
* *
4551024 TTTTATGATTTTTAATA
1 TTTTATAATTATTAATA
4551041 AATTATTCTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
TTTTATAATTATTAATAT
Found at i:4551526 original size:27 final size:27
Alignment explanation
Indices: 4551496--4551547 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
4551486 GCTAACTTCC
*
4551496 TAACTGCTAACAGACTTAGTAACAGCT
1 TAACTACTAACAGACTTAGTAACAGCT
*
4551523 TAACTACTAACTGACTTAGTAACAG
1 TAACTACTAACAGACTTAGTAACAG
4551548 TTTTGACCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.27
Consensus pattern (27 bp):
TAACTACTAACAGACTTAGTAACAGCT
Found at i:4555331 original size:21 final size:21
Alignment explanation
Indices: 4555306--4555347 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
4555296 GACTTCACCG
4555306 TAACATGCTCATGCTCACCAA
1 TAACATGCTCATGCTCACCAA
4555327 TAACATGCTCATGCTCACCAA
1 TAACATGCTCATGCTCACCAA
4555348 AGACTTCACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.33, G:0.10, T:0.24
Consensus pattern (21 bp):
TAACATGCTCATGCTCACCAA
Found at i:4556059 original size:27 final size:27
Alignment explanation
Indices: 4556029--4556080 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
4556019 GCTAACTTTC
* *
4556029 TAACTGCTAACAGACTTAGTAACAGCT
1 TAACTACTAACAGACATAGTAACAGCT
*
4556056 TAACTACTAACTGACATAGTAACAG
1 TAACTACTAACAGACATAGTAACAG
4556081 TTTTGACCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.25
Consensus pattern (27 bp):
TAACTACTAACAGACATAGTAACAGCT
Found at i:4559677 original size:2 final size:2
Alignment explanation
Indices: 4559672--4559724 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
4559662 TGTTATAATG
4559672 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4559714 AT AT AT AT AT A
1 AT AT AT AT AT A
4559725 AAACCAACAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4563609 original size:3 final size:3
Alignment explanation
Indices: 4563601--4563632 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
4563591 TAAATAGAAA
*
4563601 AAT AAT AAT AAT AAT AAT AAT AAT CAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4563633 CATCAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4565260 original size:44 final size:44
Alignment explanation
Indices: 4565212--4565576 Score: 290
Period size: 44 Copynumber: 8.1 Consensus size: 44
4565202 CGCTCAATTA
* *
4565212 CAACTTCAGGGAGATAAGATTAGTAGCTTCAGTCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTG
* * * * *
4565256 CAACTTTAGGGAGATAAGGTTTGTTA-CTTCAACCTGCTCTACTA
1 CAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCTCCACTG
* * *
4565300 CAACTTCAGAGAGATAAGGTTTGTAGCTTTAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTG
*
4565344 TAACTTCAGGGAGATAAGATTTGTAGCCTGTCTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGTA----G-CTTCAATCTGCTCCACTG
* * * **
4565393 CAACTTCAGGGAGATAAGGTTTG-A---TAAGATTTGCTTTACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCA-ATCTGCTCCACTG
* ** * *
4565434 CAACTTCAGAGAGATGAGATCGGTAATTTACAGCTTTAATCTGTTCCACTG
1 CAACTTCAGGGAGAT-A-A---G--ATTTGTAGCTTCAATCTGCTCCACTG
* * * * *
4565485 CAACTTCAAGGAAATAAGATTTGCTATCTTCAGTCTGCTCCATTG
1 CAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCTCCACTG
* * * *
4565530 CAACTTCAGAGAGATAAGACTTGTGGCTTCAATCTGCACCACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTG
4565574 CAA
1 CAA
4565577 GTTGAGAAAG
Statistics
Matches: 251, Mismatches: 50, Indels: 40
0.74 0.15 0.12
Matches are distributed among these distances:
40 2 0.01
41 24 0.10
42 1 0.00
43 3 0.01
44 114 0.45
45 36 0.14
46 2 0.01
48 5 0.02
49 40 0.16
50 1 0.00
51 21 0.08
52 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTG
Found at i:4565515 original size:137 final size:131
Alignment explanation
Indices: 4565212--4565547 Score: 365
Period size: 137 Copynumber: 2.5 Consensus size: 131
4565202 CGCTCAATTA
* * *
4565212 CAACTTCAGGGAGATAAGATTAG-TAGCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGGT
1 CAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGT
*
4565276 TTGTTACTTCAACCTGCTCTACTACAACTTCAGAGAGATAAGGTTTGTAGCTTTAATCTGCTCCA
66 TTG-TAC-TAAACCTGCTCTACTACAACTTCAGAGAGATAAGGTTTGTAGCTTTAATCTGCTCCA
4565341 CTG
129 CTG
* * *
4565344 TAACTTCAGGGAGATAAGATTTGTAGCCTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
1 CAACTTCAGGGAGATAAGA-TT-T-G-CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
** * *
4565409 AGGTTTG-A-TAAGATTTGCTTTACTGCAACTTCAGAGAGATGAGATCGGTAATT-TACAGCTTT
62 AGGTTTGTACTAA-ACCTGCTCTACTACAACTTCAGAGAGAT-A-A--GGT--TTGT--AGCTTT
*
4565471 AATCTGTTCCACTG
118 AATCTGCTCCACTG
* * * *
4565485 CAACTTCAAGGAAATAAGATTTGCTATCTTCAGTCTGCTCCATTGCAACTTCAGAGAGATAAG
1 CAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAG
4565548 ACTTGTGGCT
Statistics
Matches: 171, Mismatches: 19, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
132 18 0.11
133 4 0.02
134 24 0.14
135 3 0.02
136 1 0.01
137 76 0.44
138 4 0.02
139 2 0.01
140 4 0.02
141 35 0.20
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (131 bp):
CAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGT
TTGTACTAAACCTGCTCTACTACAACTTCAGAGAGATAAGGTTTGTAGCTTTAATCTGCTCCACT
G
Found at i:4565667 original size:51 final size:51
Alignment explanation
Indices: 4565607--4565718 Score: 134
Period size: 51 Copynumber: 2.2 Consensus size: 51
4565597 TCATAACTTG
* * * *
4565607 TAGCTTTAATATATTCCATTGCAATGCCTGGGAAACAAGATTCGCTACCTT
1 TAGCTTTAATATATTCCACTGCAAAGCCAGGGAAACAAGAATCGCTACCTT
* * * * *
4565658 TAGCTTTAATATGTTCCACTGCAAAGCCAGGGAGATAGGAATCGCTGCCTT
1 TAGCTTTAATATATTCCACTGCAAAGCCAGGGAAACAAGAATCGCTACCTT
*
4565709 CAGCTTTAAT
1 TAGCTTTAAT
4565719 CTGCTCCACT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (51 bp):
TAGCTTTAATATATTCCACTGCAAAGCCAGGGAAACAAGAATCGCTACCTT
Found at i:4565863 original size:44 final size:44
Alignment explanation
Indices: 4565795--4565910 Score: 126
Period size: 44 Copynumber: 2.6 Consensus size: 44
4565785 TTTAATTTAT
** * *
4565795 TCCACTGCAAAGTCAGGGAAATAAGATTCGCTGTCTTC-AGCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTAG-TGTCTTCAAGCTAC
* *
4565839 TCCACTGCAACTTCAGGGAGATAAGACTAGTGTCTTCAATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTAGTGTCTTCAAGCTAC
** * *
4565883 TCCACTGTTACTTCATGGAGATAGGATT
1 TCCACTGCAACTTCAGGGAGATAAGATT
4565911 TGTGGTTTCA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 7 0.12
44 53 0.88
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGATTAGTGTCTTCAAGCTAC
Found at i:4566210 original size:43 final size:43
Alignment explanation
Indices: 4566162--4566247 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
4566152 CTCATATCTT
4566162 ACTTAATCAGATTACCCCACCATAATGTTCAAGGTTCAATCCA
1 ACTTAATCAGATTACCCCACCATAATGTTCAAGGTTCAATCCA
* *
4566205 ACTTAATCAGATTGCCCCACCGTAATGTTCAAGGTTCAATCCA
1 ACTTAATCAGATTACCCCACCATAATGTTCAAGGTTCAATCCA
4566248 CTAACTTCAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (43 bp):
ACTTAATCAGATTACCCCACCATAATGTTCAAGGTTCAATCCA
Found at i:4566594 original size:403 final size:403
Alignment explanation
Indices: 4565847--4566607 Score: 1308
Period size: 403 Copynumber: 1.9 Consensus size: 403
4565837 ACTCCACTGC
**
4565847 AACTTCAGGGAGATAAGACTAGTGTCTTCAATCTACTCCACTGTTACTTCATGGAGATAGGATTT
1 AACTTCAGGGAGATAAGACTAGTGTCTTCAATCTACTCCACTGCAACTTCATGGAGATAGGATTT
* *
4565912 GTGGTTTCATTGATCTGTTCTCTGGAGTACATGACCTGTAGAATCCCTTTCATAGGCCTATTTAT
66 GTGGTTTCACTGATCTGTTCTCTGGAGAACATGACCTGTAGAATCCCTTTCATAGGCCTATTTAT
**
4565977 GCCTAGTGGTTTGGATGTTATGATCAGAATGAATCAAAATCTCCTAACTAAATGTGAATGCATGA
131 GCCTAGTGGTTAAGATGTTATGATCAGAATGAATCAAAATCTCCTAACTAAATGTGAATGCATGA
*
4566042 ATGCAAAATGTCATAAAAATAATCCCTTAATGTTTGAGTTGTTATTGCTCATTTTTCAATAAGGC
196 ATGCAAAATGTCATAAAAATAATCCCTTAATGTTTGAGTTGTTATTGCTCATTGTTCAATAAGGC
* * **
4566107 TTTATTACCAACACGTCAGAATGCTATCTTGTCCGGCTGGTAAAACTCATATCTTACTTAATCAG
261 TTTATTACCAACACGTCAAAATGCTATCTTATCCAACTGGTAAAACTCATATCTTACTTAATCAG
4566172 ATTACCCCACCATAATGTTCAAGGTTCAATCCAACTTAATCAGATTGCCCCACCGTAATGTTCAA
326 ATTACCCCACCATAATGTTCAAGGTTCAATCCAACTTAATCAGATTGCCCCACCGTAATGTTCAA
4566237 GGTTCAATCCACT
391 GGTTCAATCCACT
4566250 AACTTCAGGGAGATAAGACTTA-TGTCTTCAATCTACTCCACTGCAACTTCATGGAGATAGGATT
1 AACTTCAGGGAGATAAGAC-TAGTGTCTTCAATCTACTCCACTGCAACTTCATGGAGATAGGATT
*
4566314 TGTGGTTTCACTGATTTGTTCTCTGGAGAACATGACCTGTAGAATCCCTTTCATAGGCCTATTTA
65 TGTGGTTTCACTGATCTGTTCTCTGGAGAACATGACCTGTAGAATCCCTTTCATAGGCCTATTTA
**
4566379 TGCCTAGTGGTTAAGATGTTATGATTGGAATGAATCAAAATCTCCTAACTAAATGTGAATGCATG
130 TGCCTAGTGGTTAAGATGTTATGATCAGAATGAATCAAAATCTCCTAACTAAATGTGAATGCATG
* * * *
4566444 AATGCAAAATTTCATTAAATTAATCCCTTAATGTTTGAGTTGTTGTTGCTCATTGTTCAATAAGG
195 AATGCAAAATGTCATAAAAATAATCCCTTAATGTTTGAGTTGTTATTGCTCATTGTTCAATAAGG
*
4566509 CTTTATTACCAACATGTCAAAATGCTATCTTATCCAACTGGTAAAACTCATATCTTACTTAATCA
260 CTTTATTACCAACACGTCAAAATGCTATCTTATCCAACTGGTAAAACTCATATCTTACTTAATCA
* * *
4566574 GATTGCCTCACCGTAATGTTCAAGGTTCAATCCA
325 GATTACCCCACCATAATGTTCAAGGTTCAATCCA
4566608 CTGTAATTTT
Statistics
Matches: 335, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
403 333 0.99
404 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (403 bp):
AACTTCAGGGAGATAAGACTAGTGTCTTCAATCTACTCCACTGCAACTTCATGGAGATAGGATTT
GTGGTTTCACTGATCTGTTCTCTGGAGAACATGACCTGTAGAATCCCTTTCATAGGCCTATTTAT
GCCTAGTGGTTAAGATGTTATGATCAGAATGAATCAAAATCTCCTAACTAAATGTGAATGCATGA
ATGCAAAATGTCATAAAAATAATCCCTTAATGTTTGAGTTGTTATTGCTCATTGTTCAATAAGGC
TTTATTACCAACACGTCAAAATGCTATCTTATCCAACTGGTAAAACTCATATCTTACTTAATCAG
ATTACCCCACCATAATGTTCAAGGTTCAATCCAACTTAATCAGATTGCCCCACCGTAATGTTCAA
GGTTCAATCCACT
Found at i:4578241 original size:25 final size:26
Alignment explanation
Indices: 4578173--4578244 Score: 76
Period size: 25 Copynumber: 2.7 Consensus size: 26
4578163 ATAAAAAAAG
4578173 ATATAAATAAGTAAATAATAATATTAAT
1 ATATAAATAAGTAAAT-AT-ATATTAAT
*
4578201 ATATAAA-AAGGAAA-ATATATTTAAT
1 ATATAAATAAGTAAATATATA-TTAAT
* *
4578226 ATTTAAATATGTAAATATA
1 ATATAAATAAGTAAATATA
4578245 AATAGAAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
24 3 0.08
25 13 0.35
26 5 0.14
27 9 0.24
28 7 0.19
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (26 bp):
ATATAAATAAGTAAATATATATTAAT
Found at i:4578274 original size:9 final size:9
Alignment explanation
Indices: 4578260--4578293 Score: 68
Period size: 9 Copynumber: 3.8 Consensus size: 9
4578250 AAATACAATA
4578260 ATAATAATC
1 ATAATAATC
4578269 ATAATAATC
1 ATAATAATC
4578278 ATAATAATC
1 ATAATAATC
4578287 ATAATAA
1 ATAATAA
4578294 CATCAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (9 bp):
ATAATAATC
Found at i:4581668 original size:18 final size:19
Alignment explanation
Indices: 4581647--4581693 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
4581637 ATATAAATAC
* *
4581647 ATACTTATAT-TTTTTTAT
1 ATACTTATATAATTCTTAT
4581665 ATACTT-TATAATTCTTAT
1 ATACTTATATAATTCTTAT
*
4581683 ATACATATATA
1 ATACTTATATA
4581694 TACACATACA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 3 0.12
18 17 0.71
19 4 0.17
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (19 bp):
ATACTTATATAATTCTTAT
Found at i:4585931 original size:34 final size:34
Alignment explanation
Indices: 4585845--4585913 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
4585835 GCTCGCAGTA
* *
4585845 TCAGCTTGCACGAGCCAATAAAATTTCTTAGTCT
1 TCAGGTTGCACGAGCCAAGAAAATTTCTTAGTCT
4585879 TCAGGTTGCACGAGCCAAGAAAATTTCTTAGTCT
1 TCAGGTTGCACGAGCCAAGAAAATTTCTTAGTCT
4585913 T
1 T
4585914 AGTTCACAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (34 bp):
TCAGGTTGCACGAGCCAAGAAAATTTCTTAGTCT
Found at i:4587555 original size:21 final size:22
Alignment explanation
Indices: 4587507--4587555 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
4587497 CCTATTCAGA
*
4587507 GAGTC-AGTCCTATGAATAATG
1 GAGTCAAGTCCTATGAACAATG
4587528 GAGTCAAGTCC-ATGAACAATG
1 GAGTCAAGTCCTATGAACAATG
4587549 GAGTCAA
1 GAGTCAA
4587556 ATCATAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.22
Consensus pattern (22 bp):
GAGTCAAGTCCTATGAACAATG
Found at i:4589894 original size:13 final size:13
Alignment explanation
Indices: 4589876--4589900 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4589866 AGTTTATCGC
4589876 ATTATTATTATTT
1 ATTATTATTATTT
4589889 ATTATTATTATT
1 ATTATTATTATT
4589901 ATTTGCATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTATTATTATTT
Found at i:4598953 original size:29 final size:29
Alignment explanation
Indices: 4598920--4598977 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
4598910 CTATACAGAT
*
4598920 CGGATCAAATTAG-ACATTCTATTATTAAA
1 CGGATCAAATTAGTAC-TTATATTATTAAA
*
4598949 CGGATCAATTTAGTACTTATATTATTAAA
1 CGGATCAAATTAGTACTTATATTATTAAA
4598978 AATAATCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 24 0.92
30 2 0.08
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (29 bp):
CGGATCAAATTAGTACTTATATTATTAAA
Found at i:4599851 original size:2 final size:2
Alignment explanation
Indices: 4599813--4599837 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4599803 TACACTTATT
4599813 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
4599838 CGAAATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4602987 original size:18 final size:18
Alignment explanation
Indices: 4602966--4603001 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
4602956 ATAAAAAATA
4602966 ACCAAAATATTATAATTT
1 ACCAAAATATTATAATTT
4602984 ACCAAAATATTATAATTT
1 ACCAAAATATTATAATTT
4603002 TTTTATTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
ACCAAAATATTATAATTT
Found at i:4603022 original size:12 final size:12
Alignment explanation
Indices: 4603005--4603031 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
4602995 ATAATTTTTT
4603005 TATTTACCAAAA
1 TATTTACCAAAA
4603017 TATTTACCAAAA
1 TATTTACCAAAA
4603029 TAT
1 TAT
4603032 ACCAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (12 bp):
TATTTACCAAAA
Found at i:4603121 original size:27 final size:27
Alignment explanation
Indices: 4603091--4603142 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
4603081 GGCCAATCAC
4603091 ATTGGCGGCACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
*
4603118 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAAAGGTGCCAAAG
4603143 GACTAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.23, G:0.33, T:0.13
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGAG
Found at i:4603733 original size:19 final size:19
Alignment explanation
Indices: 4603709--4603802 Score: 113
Period size: 19 Copynumber: 5.1 Consensus size: 19
4603699 TCTAATTAAG
4603709 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* * *
4603728 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTAATT
4603746 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* *
4603765 TAATAA-ACTATTCTCAA-T
1 TAATAACTCTATT-TTAATT
4603783 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
4603802 T
1 T
4603803 TAAAAAATTA
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
18 30 0.49
19 31 0.51
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATAACTCTATTTTAATT
Found at i:4603750 original size:37 final size:37
Alignment explanation
Indices: 4603709--4603802 Score: 179
Period size: 37 Copynumber: 2.5 Consensus size: 37
4603699 TCTAATTAAG
*
4603709 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCAAT
4603746 TAATAACTCTATTTTAATTTAATAAACTATTCTCAAT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCAAT
4603783 TAATAACTCTATTTTAATTT
1 TAATAACTCTATTTTAATTT
4603803 TAAAAAATTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (37 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCAAT
Found at i:4608765 original size:29 final size:29
Alignment explanation
Indices: 4608711--4608766 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
4608701 ATACGGATTT
*
4608711 GATCAAATTAGTTCCTATATTATTAAATG
1 GATCAAATTAGTTCCTATACTATTAAATG
* *
4608740 GATCAATTTAG-TCTCTATACTCTTAAA
1 GATCAAATTAGTTC-CTATACTATTAAA
4608767 AAGAAAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 2 0.09
29 21 0.91
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (29 bp):
GATCAAATTAGTTCCTATACTATTAAATG
Found at i:4611596 original size:19 final size:18
Alignment explanation
Indices: 4611574--4611628 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
4611564 TTATAAAGTC
4611574 GTAAGAAAATTATAAAAAT
1 GTAA-AAAATTATAAAAAT
*
4611593 GTAAAGAAA-TATAAAATT
1 GTAAA-AAATTATAAAAAT
*
4611611 TTAAAAAAATTATAAAAA
1 GT-AAAAAATTATAAAAA
4611629 ATTATTGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 13 0.43
19 17 0.57
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.27
Consensus pattern (18 bp):
GTAAAAAATTATAAAAAT
Found at i:4611607 original size:18 final size:19
Alignment explanation
Indices: 4611574--4611628 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
4611564 TTATAAAGTC
*
4611574 GTAAGAAAATTATAAAAAT
1 GTAAAAAAATTATAAAAAT
* *
4611593 GTAAAGAAA-TATAAAATT
1 GTAAAAAAATTATAAAAAT
*
4611611 TTAAAAAAATTATAAAAA
1 GTAAAAAAATTATAAAAA
4611629 ATTATTGTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
18 15 0.52
19 14 0.48
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.27
Consensus pattern (19 bp):
GTAAAAAAATTATAAAAAT
Found at i:4611682 original size:9 final size:9
Alignment explanation
Indices: 4611670--4611700 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
4611660 TTTTAATAAT
4611670 TTTTATTTC
1 TTTTATTTC
4611679 TTTTATTTC
1 TTTTATTTC
4611688 TTTTATTT-
1 TTTTATTTC
4611696 TTTTA
1 TTTTA
4611701 ATCATTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTATTTC
Found at i:4611709 original size:18 final size:18
Alignment explanation
Indices: 4611660--4611709 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
4611650 AGCTATTATA
4611660 TTTTAATAATTTTTATTTC
1 TTTTAAT-ATTTTTATTTC
*
4611679 TTTT-ATTTCTTTTATTT-
1 TTTTAATAT-TTTTATTTC
4611696 TTTTAATCATTTTT
1 TTTTAAT-ATTTTT
4611710 GCCACATGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
17 5 0.19
18 16 0.62
19 5 0.19
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTAATATTTTTATTTC
Found at i:4617076 original size:21 final size:21
Alignment explanation
Indices: 4617052--4617091 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
4617042 AGCGTCAGTC
*
4617052 CCATGAACAATGGAGTCAAGT
1 CCATGAACAATAGAGTCAAGT
4617073 CCATGAACAATAGAGTCAA
1 CCATGAACAATAGAGTCAA
4617092 ATCATAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.17
Consensus pattern (21 bp):
CCATGAACAATAGAGTCAAGT
Found at i:4618546 original size:3 final size:3
Alignment explanation
Indices: 4618540--4618591 Score: 79
Period size: 3 Copynumber: 17.7 Consensus size: 3
4618530 TTTATAATAC
* *
4618540 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TGT TAT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4618587 TAT TA
1 TAT TA
4618592 ATATAGGTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:4618669 original size:20 final size:20
Alignment explanation
Indices: 4618646--4618720 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 20
4618636 TTTATTTTAC
4618646 ATTATTTTATTTTATTATGT
1 ATTATTTTATTTTATTATGT
*
4618666 ATTATTTTGTAATGCTTTTATCATGT
1 ATTA-TTT-T-A---TTTTATTATGT
* *
4618692 ATTATTTTATTTAATTATGC
1 ATTATTTTATTTTATTATGT
4618712 ATTATTTTA
1 ATTATTTTA
4618721 AATATTCTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
20 21 0.47
21 3 0.07
22 1 0.02
23 2 0.04
24 1 0.02
25 3 0.07
26 14 0.31
ACGTcount: A:0.27, C:0.04, G:0.07, T:0.63
Consensus pattern (20 bp):
ATTATTTTATTTTATTATGT
Found at i:4620452 original size:27 final size:26
Alignment explanation
Indices: 4620418--4620468 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
4620408 CAATGGCATA
*
4620418 GAAATAATATA-AACAAACAAATAAAC
1 GAAATAATATACAA-AAAAAAATAAAC
4620444 GAAATTAATATACAAAAAAAAATAA
1 GAAA-TAATATACAAAAAAAAATAA
4620469 TCCATGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 4 0.18
27 16 0.73
28 2 0.09
ACGTcount: A:0.71, C:0.08, G:0.04, T:0.18
Consensus pattern (26 bp):
GAAATAATATACAAAAAAAAATAAAC
Found at i:4620879 original size:34 final size:32
Alignment explanation
Indices: 4620767--4620879 Score: 95
Period size: 34 Copynumber: 3.3 Consensus size: 32
4620757 ATATATATGT
4620767 ATATATATATATAATTCATTAGAAAAAAATATATTA-
1 ATATATATATATAATT-A-T--AAAAAAATA-ATTAC
* *
4620803 ATATATACATGTACATATATAAAAAAATAATTATC
1 ATATATATATATA-AT-TATAAAAAAATAATTA-C
*
4620838 -TACATATATATAGATTATAAAAAAGATAATTAC
1 ATATATATATATA-ATTATAAAAAA-ATAATTAC
4620871 ATATATATA
1 ATATATATA
4620880 AAAACAAATA
Statistics
Matches: 64, Mismatches: 7, Indels: 14
0.75 0.08 0.16
Matches are distributed among these distances:
33 14 0.22
34 34 0.53
36 12 0.19
37 3 0.05
38 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (32 bp):
ATATATATATATAATTATAAAAAAATAATTAC
Found at i:4620946 original size:24 final size:24
Alignment explanation
Indices: 4620918--4620967 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
4620908 GAAATTAATT
4620918 AATTTA-GAAAAATATATATAAAAA
1 AATTTATGAAAAATA-ATATAAAAA
* *
4620942 AATTTATGAAGAATAATATAAGAA
1 AATTTATGAAAAATAATATAAAAA
4620966 AA
1 AA
4620968 CATACGTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (24 bp):
AATTTATGAAAAATAATATAAAAA
Found at i:4621068 original size:17 final size:17
Alignment explanation
Indices: 4621046--4621089 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
4621036 TAGGAAATAA
4621046 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
4621063 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
4621080 -ATATGTATAT
1 AAAATGTATAT
4621090 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:4621221 original size:3 final size:3
Alignment explanation
Indices: 4621213--4621251 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
4621203 ATATATATAG
* *
4621213 TAA TAA TAA TAA TAA TAA CAA TAA GAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4621252 CTTAATAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:4621619 original size:21 final size:21
Alignment explanation
Indices: 4621593--4621649 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
4621583 AATCATATCT
*
4621593 TCTAAGATTGCATATATCTTA
1 TCTAAGATTGCATATATCATA
4621614 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
*
4621635 TCTAAGATTACATAT
1 TCTAAGATTGCATAT
4621650 CCTTGAAGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:4625104 original size:26 final size:26
Alignment explanation
Indices: 4625056--4625122 Score: 64
Period size: 29 Copynumber: 2.5 Consensus size: 26
4625046 ATAGTAAAAA
* *
4625056 TATAATTATTTTAATAATTAATT-TTT
1 TATAATT-TTTAAAAAATTAATTATTT
4625082 TATAATTTTTAAAAAATTAAATTAAATTT
1 TATAATTTTTAAAAAATT-AATT--ATTT
*
4625111 TATCATTTTTAA
1 TATAATTTTTAA
4625123 GAGGATCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 9 0.26
26 11 0.32
29 14 0.41
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.55
Consensus pattern (26 bp):
TATAATTTTTAAAAAATTAATTATTT
Found at i:4626274 original size:5 final size:5
Alignment explanation
Indices: 4626253--4626301 Score: 52
Period size: 5 Copynumber: 10.6 Consensus size: 5
4626243 GATTTTTTTT
* *
4626253 AAAA- AAAAG AAAA- AAAAC AAAAC AAAAC AAAA- AAAA- AAAAC AAAGC
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC
4626299 AAA
1 AAA
4626302 TAAAACAGCC
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
4 16 0.39
5 25 0.61
ACGTcount: A:0.86, C:0.10, G:0.04, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:4626284 original size:18 final size:18
Alignment explanation
Indices: 4626263--4626308 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
4626253 AAAAAAAAGA
4626263 AAAAAAACAAAACAAAAC
1 AAAAAAACAAAACAAAAC
* *
4626281 AAAAAAAAAAAACAAAGC
1 AAAAAAACAAAACAAAAC
4626299 AAATAAAACA
1 AAA-AAAACA
4626309 GCCCAAAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.83, C:0.13, G:0.02, T:0.02
Consensus pattern (18 bp):
AAAAAAACAAAACAAAAC
Found at i:4626288 original size:23 final size:23
Alignment explanation
Indices: 4626253--4626306 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
4626243 GATTTTTTTT
4626253 AAAAAAAAGAAAAAAAACAAAAC
1 AAAAAAAAGAAAAAAAACAAAAC
*
4626276 AAAACAAAA-AAAAAAAACAAAGC
1 AAAA-AAAAGAAAAAAAACAAAAC
*
4626299 AAATAAAA
1 AAAAAAAA
4626307 CAGCCCAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 4 0.14
23 20 0.71
24 4 0.14
ACGTcount: A:0.85, C:0.09, G:0.04, T:0.02
Consensus pattern (23 bp):
AAAAAAAAGAAAAAAAACAAAAC
Found at i:4626423 original size:19 final size:19
Alignment explanation
Indices: 4626399--4626437 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
4626389 GGAAGGCAGC
*
4626399 AGCCCAAAGCAGCAGGCCA
1 AGCCCAAACCAGCAGGCCA
*
4626418 AGCCCAATCCAGCAGGCCA
1 AGCCCAAACCAGCAGGCCA
4626437 A
1 A
4626438 CAAGAAGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.36, C:0.38, G:0.23, T:0.03
Consensus pattern (19 bp):
AGCCCAAACCAGCAGGCCA
Found at i:4626459 original size:9 final size:9
Alignment explanation
Indices: 4626445--4626480 Score: 54
Period size: 10 Copynumber: 3.8 Consensus size: 9
4626435 CAACAAGAAG
4626445 GAAAAAAAA
1 GAAAAAAAA
4626454 GAAAAAAAACA
1 G-AAAAAAA-A
4626465 GAAAAAAAA
1 GAAAAAAAA
4626474 GAAAAAA
1 GAAAAAA
4626481 GAAGCCCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.36
10 14 0.56
11 2 0.08
ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:4627043 original size:36 final size:36
Alignment explanation
Indices: 4626996--4627364 Score: 155
Period size: 35 Copynumber: 10.2 Consensus size: 36
4626986 TCGTGTTTTC
*
4626996 AAAATTTTCGTGTTTTCAAAAATTTCGGTGATTCAA
1 AAAATTTTCGTGTTTTCAAAAATTTCGGTGTTTCAA
* * *
4627032 AAAATTTTCGTGTTTTCAAGAATTTTCGCGT-TTTTAT
1 AAAATTTTCGTGTTTTCAA-AAATTTCG-GTGTTTCAA
*
4627069 AAGATTTTCGTGTTTTCAAAAAATTCTC-GTGTTTCAA
1 AAAATTTTCGTGTTTTC-AAAAATT-TCGGTGTTTCAA
*** *
4627106 AAAAAAATCATGTGTTTTTTAAAAATTTTC-GTGTTTTC-A
1 AAAATTTTC--GTG-TTTTCAAAAA-TTTCGGTG-TTTCAA
* * * *
4627145 AAAATTTTCTTG-TTTCAAAAATCCTC-CTCTTTTC-A
1 AAAATTTTCGTGTTTTCAAAAAT-TTCGGT-GTTTCAA
*
4627180 AAAA-TTCCG-GTGTTTCAAAAATATTC-GTGTTTTC-A
1 AAAATTTTCGTGT-TTTCAAAAAT-TTCGGTG-TTTCAA
** *
4627215 AAAATTTAGGTG-ATTCAAAAAATTTTC-GTGTTTTCAA
1 AAAATTTTCGTGTTTTC-AAAAA-TTTCGGTG-TTTCAA
** * ** *
4627252 AAAATTCCCGTG-TTTCAAAATTTTCTTTTTTTTC--
1 AAAATTTTCGTGTTTTCAAAAATTTC-GGTGTTTCAA
* * * *
4627286 AAAATCTTCGTGTTTTCAACAATTCTC-ATGTTTC-T
1 AAAATTTTCGTGTTTTCAAAAATT-TCGGTGTTTCAA
* * *
4627321 AAAATTCTCGTG-TTTCAAAAATTTCCGTGTTTAAAA
1 AAAATTTTCGTGTTTTCAAAAATTTCGGTGTTT-CAA
4627357 AAAATTTT
1 AAAATTTT
4627365 GCTTCAAAAT
Statistics
Matches: 254, Mismatches: 51, Indels: 56
0.70 0.14 0.16
Matches are distributed among these distances:
33 3 0.01
34 33 0.13
35 68 0.27
36 57 0.22
37 57 0.22
38 6 0.02
39 20 0.08
40 10 0.04
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.45
Consensus pattern (36 bp):
AAAATTTTCGTGTTTTCAAAAATTTCGGTGTTTCAA
Found at i:4627049 original size:19 final size:18
Alignment explanation
Indices: 4626983--4627352 Score: 262
Period size: 18 Copynumber: 20.6 Consensus size: 18
4626973 TATTTTCGTG
4626983 TTTTCGTGTTTTC-AAAA
1 TTTTCGTGTTTTCAAAAA
4627000 TTTTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
4627018 -TTTCG-GTGATTCAAAAAA
1 TTTTCGTGT-TTTC-AAAAA
*
4627036 TTTTCGTGTTTTCAAGAA
1 TTTTCGTGTTTTCAAAAA
* * *
4627054 TTTTCGCGTTTTTATAAGA
1 TTTTCGTGTTTTCA-AAAA
4627073 TTTTCGTGTTTTCAAAAAA
1 TTTTCGTGTTTTC-AAAAA
*
4627092 TTCTCGTG-TTTCAAAAAA
1 TTTTCGTGTTTTC-AAAAA
*** *
4627110 AAATCATGTGTTTTTTAAAAA
1 TTTTC--GTG-TTTTCAAAAA
4627131 TTTTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
4627149 TTTTCTTG-TTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
** * *
4627166 TCCTCCTCTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
4627184 -TTCCG-GTGTTTCAAAAA
1 TTTTCGTGT-TTTCAAAAA
*
4627201 TATTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
** *
4627219 TTTAGGTG-ATTCAAAAAA
1 TTTTCGTGTTTTC-AAAAA
4627237 TTTTCGTGTTTTCAAAAAA
1 TTTTCGTGTTTTC-AAAAA
**
4627256 TTCCCGTG-TTTC-AAAA
1 TTTTCGTGTTTTCAAAAA
* *
4627272 TTTTCTTTTTTTTC-AAAA
1 TTTTC-GTGTTTTCAAAAA
* *
4627290 TCTTCGTGTTTTCAACAA
1 TTTTCGTGTTTTCAAAAA
* * *
4627308 TTCTCATG-TTTCTAAAA
1 TTTTCGTGTTTTCAAAAA
*
4627325 TTCTCGTG-TTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
4627342 TTTCCGTGTTT
1 TTTTCGTGTTT
4627353 AAAAAAAATT
Statistics
Matches: 275, Mismatches: 57, Indels: 41
0.74 0.15 0.11
Matches are distributed among these distances:
16 10 0.04
17 82 0.30
18 116 0.42
19 51 0.19
20 6 0.02
21 7 0.03
22 3 0.01
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (18 bp):
TTTTCGTGTTTTCAAAAA
Found at i:4632069 original size:205 final size:205
Alignment explanation
Indices: 4631712--4632121 Score: 739
Period size: 205 Copynumber: 2.0 Consensus size: 205
4631702 GGTGGTATAG
4631712 TCAGCTTAGTAAAGAAAAAATCCGATCATCGAAGGACTTAGCATCGGTGTTTTGTGAGCAATACA
1 TCAGCTTAGTAAAGAAAAAATCCGATCATCGAAGGACTTAGCATCGGTGTTTTGTGAGCAATACA
*
4631777 AGCATGTATCAATAATGGTACCTGATTGACTAACTTTGCAGATGATGGAAAAAAGCCAACAGAGA
66 AGCATGTAACAATAATGGTACCTGATTGACTAACTTTGCAGATGATGGAAAAAAGCCAACAGAGA
* * *
4631842 CTTTTAAATAATATGCGCAAAAATGGAGGGATGTTTCAGCTCAAGTGGAACCCCCGTTGACTAAA
131 CTTTTAAACAATATGAGCAAAAATAGAGGGATGTTTCAGCTCAAGTGGAACCCCCGTTGACTAAA
4631907 ACAGAGATAA
196 ACAGAGATAA
* *
4631917 TCAGCTTAGTAGAGAAAAAATTCGATCATCGAAGGACTTAGCATCGGTGTTTTGTGAGCAATACA
1 TCAGCTTAGTAAAGAAAAAATCCGATCATCGAAGGACTTAGCATCGGTGTTTTGTGAGCAATACA
*
4631982 AGCATGTAACAATAATGGTACCTGATTGACTAACTTTGCAGATGATGGAAAAAAGCCAACGGAGA
66 AGCATGTAACAATAATGGTACCTGATTGACTAACTTTGCAGATGATGGAAAAAAGCCAACAGAGA
*
4632047 CTTTTAAACAATATGAGCAAAAATAGAGGGATGTTTTAGCTCAAGTGGAACCCCCGTTGACTAAA
131 CTTTTAAACAATATGAGCAAAAATAGAGGGATGTTTCAGCTCAAGTGGAACCCCCGTTGACTAAA
*
4632112 ACGGAGATAA
196 ACAGAGATAA
4632122 AAGTCCTCTT
Statistics
Matches: 196, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
205 196 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (205 bp):
TCAGCTTAGTAAAGAAAAAATCCGATCATCGAAGGACTTAGCATCGGTGTTTTGTGAGCAATACA
AGCATGTAACAATAATGGTACCTGATTGACTAACTTTGCAGATGATGGAAAAAAGCCAACAGAGA
CTTTTAAACAATATGAGCAAAAATAGAGGGATGTTTCAGCTCAAGTGGAACCCCCGTTGACTAAA
ACAGAGATAA
Found at i:4639572 original size:78 final size:78
Alignment explanation
Indices: 4639386--4640062 Score: 816
Period size: 78 Copynumber: 8.6 Consensus size: 78
4639376 CAATTTTTGT
* * *
4639386 TTTTTCAAAAATCAACTCATATTGCGAGAAGTGA-TTGAGCCTCAGGTA-ACACGCTGAGGTA-T
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACATGCCGAGGTATT
*
4639448 TTTTTAAATTTCTGTT
65 TTTTTAAATTTC--TA
* * *
4639464 TTTTTGCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCA-GACATATGTCGAGGTATT
1 TTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACATGCCGAGGTATT
4639528 TCTTTTAAATTTCTA
65 T-TTTTAAATTTCTA
* *
4639543 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACT-CTGAGGTA-T
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACA-TGCCGAGGTATT
*
4639606 TTTTTAAGTTTCTA
65 TTTTTAAATTTCTA
* *
4639620 TTTTTTTCAAAAAATCAACTCATATTACGAAAGGTGAGTTGAGCCTC-GGACACATGCCGAGGTA
1 --TTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACATGCCGAGGTA
4639684 TTTCTTTTAAATTTCTA
63 TTT-TTTTAAATTTCTA
* * **
4639701 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTTGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACATGCCGAGGTATTT
* *
4639766 TTTTAAATTTTTGTT
66 TTTTAAA--TTTCTA
* *
4639781 TTTTTCAAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTC-GAACACATGCCGAGGTATT
1 TTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACATGCCGAGGTATT
*
4639845 TCTTTTAAATTTCTG
65 T-TTTTAAATTTCTA
* * *
4639860 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTA-TT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACATGCCGAGGTATTT
4639924 TTTTAAATTTCTA
66 TTTTAAATTTCTA
* * *
4639937 TTTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTCAATTGAGCCTC-GGACACATGCCGAGA
1 ----TTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACATGCCGAGG
* *
4640001 TATTTCTTTTAAATTTTTG
61 TATTT-TTTTAAATTTCTA
* * *
4640020 TTTTTCAAAAATCAACTCATAATGCGAGAAGTGTGTTGAGCCT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4640063 TGGGCCGCAC
Statistics
Matches: 521, Mismatches: 52, Indels: 52
0.83 0.08 0.08
Matches are distributed among these distances:
77 24 0.05
78 162 0.31
79 124 0.24
80 76 0.15
81 86 0.17
82 38 0.07
83 11 0.02
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (78 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACATGCCGAGGTATTT
TTTTAAATTTCTA
Found at i:4639665 original size:158 final size:158
Alignment explanation
Indices: 4639386--4640107 Score: 1097
Period size: 158 Copynumber: 4.6 Consensus size: 158
4639376 CAATTTTTGT
* *
4639386 TTTTTCAAAAATCAACTCATATTGCGAGAAGTGA-TTGAGCCTCAGGTAACACGCTGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTT
*
4639450 TTTAAATTTCTGTTTTTTTGC-AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGACA
66 TTTAAATTTCTGTTTTTTT-CAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGACA
* *
4639514 TATGTCGAGGTATTTCTTTTAAATTTCTA
130 CATGCCGAGGTATTTCTTTTAAATTTCTA
*
4639543 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTCTGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTT
* * * * *
4639608 TTTAAGTTTCTATTTTTTTCAAAAAATCAACTCATATTACGAAAGGTGAGTTGAGCCTCGGACAC
66 TTTAAATTTCTGTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGACAC
4639673 ATGCCGAGGTATTTCTTTTAAATTTCTA
131 ATGCCGAGGTATTTCTTTTAAATTTCTA
*
4639701 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTTGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTA-TT
* * * *
4639766 TTTTAAATTTTTGTTTTTTTCAAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCGAACA
65 TTTTAAATTTCTGTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGACA
*
4639831 CATGCCGAGGTATTTCTTTTAAATTTCTG
130 CATGCCGAGGTATTTCTTTTAAATTTCTA
4639860 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTT
* *
4639925 TTTAAATTTCTATTTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTCAATTGAGCCTCGGAC
66 TTTAAATTTC--TGTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGAC
* * *
4639990 ACATGCCGAGATATTTCTTTTAAATTTTTG
129 ACATGCCGAGGTATTTCTTTTAAATTTCTA
* * * ** * * * *
4640020 TTTTTCAAAAATCAACTCATAATGCGAGAAGTGTGTTGAGCCTTGGGCCGCACACCGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTT
* *
4640085 TTTCAATTTTTGTTTTTTTCAAA
66 TTTAAATTTCTGTTTTTTTCAAA
4640108 TTTTCAATAA
Statistics
Matches: 518, Mismatches: 42, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
157 34 0.07
158 195 0.38
159 149 0.29
160 140 0.27
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (158 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTT
TTTAAATTTCTGTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGACAC
ATGCCGAGGTATTTCTTTTAAATTTCTA
Found at i:4649141 original size:15 final size:16
Alignment explanation
Indices: 4649104--4649148 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
4649094 ATATTTTAGG
4649104 TGTTTGGGCTTAGGTT
1 TGTTTGGGCTTAGGTT
* *
4649120 AGTTTGGGCTT-GTTT
1 TGTTTGGGCTTAGGTT
4649135 TGTTTGGG-TTAGGT
1 TGTTTGGGCTTAGGT
4649149 CTGTGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 2 0.08
15 12 0.50
16 10 0.42
ACGTcount: A:0.07, C:0.04, G:0.38, T:0.51
Consensus pattern (16 bp):
TGTTTGGGCTTAGGTT
Found at i:4658672 original size:63 final size:63
Alignment explanation
Indices: 4658616--4658736 Score: 197
Period size: 63 Copynumber: 1.9 Consensus size: 63
4658606 CACCATTTGG
* * **
4658616 GCCAAGAGTTTGTGGCCTATACTCATGGCTTTCAACATTTGGCCTGGGCCAACCACCATTCAA
1 GCCAAGAGTTTGTGGCCTACACTCATGACAATCAACATTTGGCCTGGGCCAACCACCATTCAA
*
4658679 GCCAAGAGTTTGTGGCCTACACTCATGACAATCAACATTTGGCCTGGGCCCACCACCA
1 GCCAAGAGTTTGTGGCCTACACTCATGACAATCAACATTTGGCCTGGGCCAACCACCA
4658737 ATCGGTCCTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.24
Consensus pattern (63 bp):
GCCAAGAGTTTGTGGCCTACACTCATGACAATCAACATTTGGCCTGGGCCAACCACCATTCAA
Found at i:4660517 original size:9 final size:9
Alignment explanation
Indices: 4660503--4660533 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
4660493 GTTAAACGAA
4660503 TCGAGTTAT
1 TCGAGTTAT
*
4660512 TCGAGTTAA
1 TCGAGTTAT
4660521 TCGAGTTAT
1 TCGAGTTAT
4660530 TCGA
1 TCGA
4660534 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:4660603 original size:9 final size:9
Alignment explanation
Indices: 4660586--4660631 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
4660576 TGAGTTTTCG
4660586 AATTCGAAT
1 AATTCGAAT
*
4660595 AACTCGAAT
1 AATTCGAAT
4660604 AATTCGAAT
1 AATTCGAAT
4660613 AATTCGAAT
1 AATTCGAAT
4660622 AATTCGAAT
1 AATTCGAAT
4660631 A
1 A
4660632 TCAAACTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:4661023 original size:17 final size:16
Alignment explanation
Indices: 4660989--4661019 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4660979 CCTATTTACT
*
4660989 TTCCCTCAAACTTTTA
1 TTCCCTAAAACTTTTA
4661005 TTCCCTAAAACTTTT
1 TTCCCTAAAACTTTT
4661020 TATTTTCCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (16 bp):
TTCCCTAAAACTTTTA
Found at i:4664456 original size:114 final size:114
Alignment explanation
Indices: 4664255--4664803 Score: 710
Period size: 114 Copynumber: 4.8 Consensus size: 114
4664245 GCATTTTCCA
* * * **
4664255 GAAAGCACCGC-AAAATACCTAGGCCCAACGACGCCGTTTT-TCGAGCTTTCGGGGATTCAACGG
1 GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCT-GAGCTTTCGGGGATTTAGTGG
** * * *
4664318 CATTTTTAAAAATGCGCCGCTAATGGTCAGGGCT-TTATCGGCGTTGTTGG
65 CATTTTTAAGTATGCGCCGCTAATGCTCAGGG-TGTTAGCGGCGTTTTTGG
* * * * * *
4664368 TAAAGCGCTGCAAAAATACCTAAGCCCAATGACCCCGTTTTCTGAGCTTTCAGGGATTTAGCGGC
1 GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
* * * *
4664433 GTTTTTAAGTATGCGCCGTTAATGCTCAGGGCT-TTAGCGGCATTTTTGA
66 ATTTTTAAGTATGCGCCGCTAATGCTCAGGG-TGTTAGCGGCGTTTTTGG
* * * *
4664482 GAAAGGGCCGCAAAAAAAACCTAAGCTCAACGATGCCGTTTTCTGAGCTTTCGGGGATTTAGTGG
1 GAAAGCGCCGC-AAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGG
*
4664547 CGTTTTTAAGTATGCGCCGCTAATGCTCAGGGTGTTAGCGGCGTTTTTGG
65 CATTTTTAAGTATGCGCCGCTAATGCTCAGGGTGTTAGCGGCGTTTTTGG
* * * *
4664597 GAAAGCGCCGCAAAAATACCTGAGCTCAATGACGCCGCTTTCTGAGCTTTCGGGGATTTAGTGGC
1 GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
* *
4664662 ATTTTTAAGTATGCACCGCTAATGCTCAGGGTGTTAGCGGCGTTTTCGG
66 ATTTTTAAGTATGCGCCGCTAATGCTCAGGGTGTTAGCGGCGTTTTTGG
* * *
4664711 GAAAGCGCCGCAAAAATACCTAAGCCCAACGATGCCGTTATCTGAGCTTTTGGGGATTTAGTGGC
1 GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
* *
4664776 ATTTTTAAGTAAGCGCCACTAATGCTCA
66 ATTTTTAAGTATGCGCCGCTAATGCTCA
4664804 AGGATTTAAT
Statistics
Matches: 382, Mismatches: 50, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
113 8 0.02
114 272 0.71
115 102 0.27
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (114 bp):
GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
ATTTTTAAGTATGCGCCGCTAATGCTCAGGGTGTTAGCGGCGTTTTTGG
Found at i:4664688 original size:229 final size:228
Alignment explanation
Indices: 4664240--4664803 Score: 758
Period size: 229 Copynumber: 2.5 Consensus size: 228
4664230 AAATAAGCAG
* * * *
4664240 TAGCGGCATTTTCCAGAAAGCACCGC-AAAATACCTAGGCCCAACGACGCCGTTTT-TCGAGCTT
1 TAGCGGCATTTTCGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGATGCCGTTTTCT-GAGCTT
* ** ** * *
4664303 TCGGGGATTCAACGGCATTTTTAAAAATGCGCCGCTAATGGTCAGGGCTTTATCGGCGTTGTTGG
65 TCGGGGATTTAGTGGCATTTTTAAGTATGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTGTTGG
* * *
4664368 TAAAGCGCTGCAAAAATACCTAAGCCCAATGACCCCGTTTTCTGAGCTTTCAGGGATTTAGCGGC
130 GAAAGCGCCGCAAAAATACCTAAGCCCAATGACCCCGCTTTCTGAGCTTTCAGGGATTTAGCGGC
* * *
4664433 GTTTTTAAGTATGCGCCGTTAATGCTCAGGGCT-T
195 ATTTTTAAGTATGCACCGCTAATGCTCAGGG-TGT
* * * *
4664467 TAGCGGCATTTTTGAGAAAGGGCCGCAAAAAAAACCTAAGCTCAACGATGCCGTTTTCTGAGCTT
1 TAGCGGCATTTTCGAGAAAGCGCCGC-AAAAATACCTAAGCCCAACGATGCCGTTTTCTGAGCTT
* *
4664532 TCGGGGATTTAGTGGCGTTTTTAAGTATGCGCCGCTAATGCTCAGGG-TGTTAGCGGCGTTTTTG
65 TCGGGGATTTAGTGGCATTTTTAAGTATGCGCCGCTAATGCTCAGGGCT-TTAGCGGCGTTGTTG
* * * * *
4664596 GGAAAGCGCCGCAAAAATACCTGAGCTCAATGACGCCGCTTTCTGAGCTTTCGGGGATTTAGTGG
129 GGAAAGCGCCGCAAAAATACCTAAGCCCAATGACCCCGCTTTCTGAGCTTTCAGGGATTTAGCGG
4664661 CATTTTTAAGTATGCACCGCTAATGCTCAGGGTGT
194 CATTTTTAAGTATGCACCGCTAATGCTCAGGGTGT
* * *
4664696 TAGCGGCGTTTTCGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGATGCCGTTATCTGAGCTTT
1 TAGCGGCATTTTCGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGATGCCGTTTTCTGAGCTTT
* * *
4664761 TGGGGATTTAGTGGCATTTTTAAGTAAGCGCCACTAATGCTCA
66 CGGGGATTTAGTGGCATTTTTAAGTATGCGCCGCTAATGCTCA
4664804 AGGATTTAAT
Statistics
Matches: 293, Mismatches: 39, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
227 22 0.08
228 77 0.26
229 193 0.66
230 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (228 bp):
TAGCGGCATTTTCGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGATGCCGTTTTCTGAGCTTT
CGGGGATTTAGTGGCATTTTTAAGTATGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTGTTGGG
AAAGCGCCGCAAAAATACCTAAGCCCAATGACCCCGCTTTCTGAGCTTTCAGGGATTTAGCGGCA
TTTTTAAGTATGCACCGCTAATGCTCAGGGTGT
Found at i:4665360 original size:7 final size:7
Alignment explanation
Indices: 4665350--4665401 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
4665340 AAAGCAACTA
4665350 GGGTTAG
1 GGGTTAG
*
4665357 GGGTTAT
1 GGGTTAG
**
4665364 GCTTTAG
1 GGGTTAG
4665371 GGGTTAG
1 GGGTTAG
4665378 GGGATTTAG
1 GGG--TTAG
4665387 GGGTTA-
1 GGGTTAG
4665393 GGGTTAG
1 GGGTTAG
4665400 GG
1 GG
4665402 TTTCAACGCC
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
6 6 0.17
7 23 0.64
9 7 0.19
ACGTcount: A:0.15, C:0.02, G:0.50, T:0.33
Consensus pattern (7 bp):
GGGTTAG
Found at i:4665488 original size:21 final size:21
Alignment explanation
Indices: 4665464--4665506 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
4665454 CGGTTTAAAA
*
4665464 TTTAAGATTTAATGTTTATGG
1 TTTAAGATTTAAGGTTTATGG
* *
4665485 TTTAGGGTTTAAGGTTTATGG
1 TTTAAGATTTAAGGTTTATGG
4665506 T
1 T
4665507 ATAATGTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (21 bp):
TTTAAGATTTAAGGTTTATGG
Found at i:4665515 original size:21 final size:21
Alignment explanation
Indices: 4665466--4665516 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
4665456 GTTTAAAATT
* * *
4665466 TAAGATTTAATGTTTATGGTT
1 TAAGGTTTAAGGTTTATGGTA
*
4665487 TAGGGTTTAAGGTTTATGGTA
1 TAAGGTTTAAGGTTTATGGTA
*
4665508 TAATGTTTA
1 TAAGGTTTA
4665517 TTAATTTTGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (21 bp):
TAAGGTTTAAGGTTTATGGTA
Found at i:4665980 original size:73 final size:72
Alignment explanation
Indices: 4665903--4666124 Score: 182
Period size: 74 Copynumber: 3.0 Consensus size: 72
4665893 AGGAAATGGC
*
4665903 GCCGTTTCCTATTTTTATTAGTGGCGCTTTAGCTAATACGCCGCCAAAATGTTTAAGGTTATCTT
1 GCCGTTTCCTATTTTTATTAGTGGCGCTTTAG-TAATACGCCACCAAAATGTTTAAGGTTATCTT
4665968 ATAACGGT
65 ATAACGGT
* * * * * * **
4665976 GCCGTTTTGTCTA-TGTTATTAGTGGCGCTTTTAGT-GTAAG-CACCACAAATATTTAATAGTGG
1 GCCG-TTT-CCTATTTTTATTAGTGGCGC-TTTAGTAATACGCCACCA-AAATGTTTAA-GGTTA
*
4666038 T-TGAGGTAACGGT
61 TCTTA--TAACGGT
* * * ** * *
4666051 GCCGTTTCCTATTTTTTTTAGTGGTGCTTTAGATAAAACGCCATAAAAATGTTGAAGGTTACCTT
1 GCCGTTTCCTATTTTTATTAGTGGCGCTTTAG-TAATACGCCACCAAAATGTTTAAGGTTATCTT
4666116 ATAACGGT
65 ATAACGGT
4666124 G
1 G
4666125 TCATTTTGTC
Statistics
Matches: 111, Mismatches: 26, Indels: 24
0.69 0.16 0.15
Matches are distributed among these distances:
72 4 0.04
73 34 0.31
74 39 0.35
75 31 0.28
76 3 0.03
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.38
Consensus pattern (72 bp):
GCCGTTTCCTATTTTTATTAGTGGCGCTTTAGTAATACGCCACCAAAATGTTTAAGGTTATCTTA
TAACGGT
Found at i:4666060 original size:148 final size:148
Alignment explanation
Indices: 4665889--4666171 Score: 404
Period size: 148 Copynumber: 1.9 Consensus size: 148
4665879 TTTATTACGA
* * * * *
4665889 GTTGAGGAAATGGCGCCGTTTCCTATTTTTATTAGTGGCGCTTTAGCTAATACGCCGCCAAAATG
1 GTTGAGGAAACGGCGCCGTTTCCTATTTTTATTAGTGGCGCTTTAGATAAAACGCCACAAAAATG
* * * * * *
4665954 TTTAAGGTTATCTTATAACGGTGCCGTTTTGTCTATGTTATTAGTGGCGCTTTTAGTGTAAGCAC
66 TTGAAGGTTACCTTATAACGGTGCCATTTTGTCCATGTTATTAGTGGCGCTTTTACTCTAAGCAC
4666019 CACAAATATTTAATAGTG
131 CACAAATATTTAATAGTG
* * * * *
4666037 GTTGAGGTAACGGTGCCGTTTCCTATTTTTTTTAGTGGTGCTTTAGATAAAACGCCATAAAAATG
1 GTTGAGGAAACGGCGCCGTTTCCTATTTTTATTAGTGGCGCTTTAGATAAAACGCCACAAAAATG
* *
4666102 TTGAAGGTTACCTTATAACGGTGTCATTTTGTCCATGTTATTAGTGGCGTTTTTACTCTAAGCAC
66 TTGAAGGTTACCTTATAACGGTGCCATTTTGTCCATGTTATTAGTGGCGCTTTTACTCTAAGCAC
4666167 CACAA
131 CACAA
4666172 GTTGTAGTTT
Statistics
Matches: 117, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
148 117 1.00
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (148 bp):
GTTGAGGAAACGGCGCCGTTTCCTATTTTTATTAGTGGCGCTTTAGATAAAACGCCACAAAAATG
TTGAAGGTTACCTTATAACGGTGCCATTTTGTCCATGTTATTAGTGGCGCTTTTACTCTAAGCAC
CACAAATATTTAATAGTG
Done.