Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 166 of 168
Found at i:50065645 original size:51 final size:49
Alignment explanation
Indices: 50065569--50065705 Score: 168
Period size: 51 Copynumber: 2.7 Consensus size: 49
50065559 CATGAGAACT
*
50065569 CATGTGTAGTACTATGTGCAGGCTACTATGAGTATAA-GATAGTTATGGTCA
1 CATGTGTAGTACTATGTGCAGGCTACTATGTGTATAATGATA--T-TGGTCA
* *
50065620 CATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATATTGGTCA
1 CATGTGTAGTACTATGTGCAGGCTACTATGTGTA--TAATGATATTGGTCA
* * *
50065671 CATGTGCAGTACTAAGTGTAGGCTACTATGTGTAT
1 CATGTGTAGTACTATGTGCAGGCTACTATGTGTAT
50065706 CGGATAGCAT
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
51 68 0.91
52 1 0.01
53 2 0.03
54 4 0.05
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (49 bp):
CATGTGTAGTACTATGTGCAGGCTACTATGTGTATAATGATATTGGTCA
Found at i:50080064 original size:36 final size:36
Alignment explanation
Indices: 50080017--50080094 Score: 120
Period size: 36 Copynumber: 2.2 Consensus size: 36
50080007 GGGCCGTGTA
* ***
50080017 TTTGGGTGTGATATGGAGCGCGGGTTTGGGCCTCCT
1 TTTGGGCGTGATATGGAGCGCCAATTTGGGCCTCCT
50080053 TTTGGGCGTGATATGGAGCGCCAATTTGGGCCTCCT
1 TTTGGGCGTGATATGGAGCGCCAATTTGGGCCTCCT
50080089 TTTGGG
1 TTTGGG
50080095 TGTAACTTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.10, C:0.18, G:0.38, T:0.33
Consensus pattern (36 bp):
TTTGGGCGTGATATGGAGCGCCAATTTGGGCCTCCT
Found at i:50092882 original size:125 final size:127
Alignment explanation
Indices: 50092628--50093015 Score: 363
Period size: 125 Copynumber: 3.0 Consensus size: 127
50092618 GTTACAGATT
* ** * * * * *
50092628 TTTTTTCTCGATAATATCGAGTTTTATCATATGAGCTTGATATTCAAACTTGAATTATTTAAAAT
1 TTTTTTCTCGATAATTTATAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATAATTTAAAAT
* * * * * * *
50092693 TAATTGTCTTCGTCATTTTAAGTATGGGATAC-TTTTTTTTTGTCAGTTTAAGATTGAATTA
66 TAATTGTCTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCAGTTTAAGATTAAATCA
* * *
50092754 -TTTTTCTCGATAATTTATATTTTTGTCATATGAGTTTGACACTCAAATTTAAATAATTTAAAAT
1 TTTTTTCTCGATAATTTATAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATAATTTAAAAT
* **
50092818 TAATTGTCTTC-TCATTCTAAGTTTGTGATACATTTTTTTATGAT-GGTTTTGGATTAAATCA
66 TAATTGTCTTCATCATTCTAAGTTTGTGATACATTTTTTTATG-TCAGTTTAAGATTAAATCA
** * * * * *
50092879 TTTTTTCTCTCTCGATTATATCAAGTTTTGTCATATGAGTTCGATACTTAAATTTGAATCATTTT
1 TTTTTTCTCGAT-AATT-TAT--AGTTTTGTCATATGAGTTTGATACTCAAATTTGAATAATTTA
* * * * * * * *
50092944 AAATGAACTGTTTTCATCATTCTAAGTTGGTAATACATTTTTTTATGTCGGTTTCAA-ATTGAGT
62 AAATTAATTGTCTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCAGTTT-AAGATTAAAT
50093008 CA
126 CA
50093010 TTTTTT
1 TTTTTT
50093016 TTCTCTCAAT
Statistics
Matches: 213, Mismatches: 39, Indels: 15
0.80 0.15 0.06
Matches are distributed among these distances:
124 17 0.08
125 85 0.40
126 10 0.05
127 3 0.01
128 3 0.01
130 48 0.23
131 47 0.22
ACGTcount: A:0.28, C:0.11, G:0.12, T:0.49
Consensus pattern (127 bp):
TTTTTTCTCGATAATTTATAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATAATTTAAAAT
TAATTGTCTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCAGTTTAAGATTAAATCA
Found at i:50092997 original size:131 final size:130
Alignment explanation
Indices: 50092774--50093038 Score: 325
Period size: 131 Copynumber: 2.0 Consensus size: 130
50092764 TAATTTATAT
* * *
50092774 TTTTGTCATATGAGTTTGACACTCAAATTTAAATAATTTAAAATTAATTGTCTTCTCATTCTAAG
1 TTTTGTCATATGAGTTCGACACTCAAATTTAAATAATTTAAAATGAACTGTCTTCTCATTCTAAG
* * *** * *
50092839 TTTGTGATACATTTTTTTATGATGGTTTTGGATTAAATCATTTTTTCTCTCTCGATTATATCAAG
66 TTGGTAATACATTTTTTTATGATGGTTTCAAATTAAATCATTTTTTCTCTCTCAATAATATCAAG
* * * * * *
50092904 TTTTGTCATATGAGTTCGATACTTAAATTTGAATCATTTTAAATGAACTGTTTTCATCATTCTAA
1 TTTTGTCATATGAGTTCGACACTCAAATTTAAATAATTTAAAATGAACTGTCTTC-TCATTCTAA
* * *
50092969 GTTGGTAATACATTTTTTTATG-TCGGTTTCAAATTGAGTCATTTTTTTTCTCTCAATAATATCA
65 GTTGGTAATACATTTTTTTATGAT-GGTTTCAAATTAAATCATTTTTTCTCTCTCAATAATATCA
*
50093033 TG
129 AG
50093035 TTTT
1 TTTT
50093039 TTTGTCTTCA
Statistics
Matches: 113, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
130 47 0.42
131 66 0.58
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.49
Consensus pattern (130 bp):
TTTTGTCATATGAGTTCGACACTCAAATTTAAATAATTTAAAATGAACTGTCTTCTCATTCTAAG
TTGGTAATACATTTTTTTATGATGGTTTCAAATTAAATCATTTTTTCTCTCTCAATAATATCAAG
Found at i:50093197 original size:215 final size:219
Alignment explanation
Indices: 50092821--50093235 Score: 531
Period size: 215 Copynumber: 1.9 Consensus size: 219
50092811 TTAAAATTAA
* * *
50092821 TTGTCTTCTCATTCTAAGTTTGTGATACATTTTTTTATGATGGTTTTGGATTAAATCATTTTTTC
1 TTGTCTTCTCATTCTAAGTTTGGGATACATTTTTTTATGATAGTTTCGGATTAAATCATTTTTTC
* * * *
50092886 TCTCTCGATTATATCAAGTTTTGTCATATGAGTTCGATACTTAAATTTGAATCATTTTAAATGAA
66 TCTCTCGATAATATCAAGTTTGGTCATATGAGTTCGATACTCAAATTTGAATCATTTAAAATGAA
* * * *
50092951 CTGTTTTCATCATTCTAAGTTGGTAATACATTTTTTTATGTCGGTTTCAAATTGAGTCATTTTTT
131 CTATTTTCATCATTCTAAGTTGGTAATACATTCTTTTATGTCAGTTTCAAATTGAATCATTTTTT
*
50093016 TTCTCTCAATAATATCATGTTTTT
196 CTCTCTCAATAATATCATGTTTTT
* *
50093040 TTGTCTTCATCATTTTAAGTTTGGGATACATTTTTTT-TG-TCAGTTTCGGATTGAATCA-TTTT
1 TTGTCTTC-TCATTCTAAGTTTGGGATACATTTTTTTATGAT-AGTTTCGGATTAAATCATTTTT
* *
50093102 T-TCT-T-GATAATATCGAA-TTTGGTCATATGAGTTTGATACTCAAATTTGAATTATTTAAAAT
64 TCTCTCTCGATAATATC-AAGTTTGGTCATATGAGTTCGATACTCAAATTTGAATCATTTAAAAT
* ** * ***
50093163 TAACTATTTTTGTCATTCTAAGTTTGG-GATACATTCTTTTATGTCAGTTTTGGATTGAATCATT
128 GAACTATTTTCATCATTCTAAG-TTGGTAATACATTCTTTTATGTCAGTTTCAAATTGAATCATT
50093227 TTTTCTCTC
192 TTTTCTCTC
50093236 GTTAATATAA
Statistics
Matches: 169, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
215 103 0.61
216 7 0.04
217 3 0.02
218 6 0.04
219 24 0.14
220 26 0.15
ACGTcount: A:0.25, C:0.12, G:0.13, T:0.50
Consensus pattern (219 bp):
TTGTCTTCTCATTCTAAGTTTGGGATACATTTTTTTATGATAGTTTCGGATTAAATCATTTTTTC
TCTCTCGATAATATCAAGTTTGGTCATATGAGTTCGATACTCAAATTTGAATCATTTAAAATGAA
CTATTTTCATCATTCTAAGTTGGTAATACATTCTTTTATGTCAGTTTCAAATTGAATCATTTTTT
CTCTCTCAATAATATCATGTTTTT
Found at i:50093325 original size:344 final size:344
Alignment explanation
Indices: 50092696--50093359 Score: 899
Period size: 344 Copynumber: 1.9 Consensus size: 344
50092686 TTAAAATTAA
* * *
50092696 TTGTCTTCGTCATTTTAAGTATGGGATACTTTTTTTTTGTCAGTTTAAGATTGAATTATTTTTCT
1 TTGTCTTCATCATTTTAAGTATGGGATACATTTTTTTTGTCAGTTTAAGATTGAATCATTTTTCT
* * * *
50092761 CGATAATTTATATTTTTGTCATATGAGTTTGACACTCAAATTTAAATAATTTAAAATTAATTGTC
66 CGATAATATAGAATTTGGTCATATGAGTTTGACACTCAAATTTAAATAATTTAAAATTAATTGTC
* * *
50092826 TTCTCATTCTAAGTTTGTGATACATTTTTTTATGATGGTTTTGGATTAAATCATTTTTTCTCTCT
131 TTCTCATTCTAAGTTTGGGATACATTCTTTTATGATAGTTTTGGATTAAATCATTTTTTCTCTCT
* * * * * * *
50092891 CGATTATATCAAGTTTTGTCATATGAGTTCGATACTTAAATTTGAATCATTTTAAATGAACTGTT
196 CGATTATATAAAATTTTGTCATACGAGTTCGATACTCAAATTTGAATCATTTGAAATGAACTCTC
* * *
50092956 TTCATCATTCTAAGTTGGTAATACATTTTTTTATGTCGGTTTCAAATTGAGTCATTTTTTTTCTC
261 TTCATCATTCTAAGTTGGTAATACATTTTTCTATGTCGGTTTCAAATTGAATAATTTTTTTTCTC
50093021 TCAATAATATCATGTTTTT
326 TCAATAATATCATGTTTTT
* **
50093040 TTGTCTTCATCATTTTAAGTTTGGGATACATTTTTTTTGTCAGTTTCGGATTGAATCATTTTTTC
1 TTGTCTTCATCATTTTAAGTATGGGATACATTTTTTTTGTCAGTTTAAGATTGAATCA-TTTTTC
* * * * *
50093105 TTGATAATATCGAATTTGGTCATATGAGTTTGATACTCAAATTTGAATTATTTAAAATTAACTAT
65 TCGATAATATAGAATTTGGTCATATGAGTTTGACACTCAAATTTAAATAATTTAAAATTAA-T-T
* * *
50093170 -TTTTGTCATTCTAAGTTTGGGATACATTCTTTTATG-TCAGTTTTGGATTGAATCA-TTTTT-T
128 GTCTTCTCATTCTAAGTTTGGGATACATTCTTTTATGAT-AGTTTTGGATTAAATCATTTTTTCT
* * *
50093231 CTCTCG-TTAATATAAAATTTTGTCATACGAGTTTGATACTCGAATTTGAATCATTTGAAATTAA
192 CTCTCGATT-ATATAAAATTTTGTCATACGAGTTCGATACTCAAATTTGAATCATTTGAAATGAA
* * *
50093295 TTCTCTTCATCATTCTAAGTTTGG-AATACATTTTTCTATGTTGGTTTCAAGTTGAATAATTTTT
256 CTCTCTTCATCATTCTAAG-TTGGTAATACATTTTTCTATGTCGGTTTCAAATTGAATAATTTTT
50093359 T
320 T
50093360 CCTCGATAAT
Statistics
Matches: 277, Mismatches: 37, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
343 2 0.01
344 158 0.57
345 68 0.25
346 48 0.17
347 1 0.00
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.50
Consensus pattern (344 bp):
TTGTCTTCATCATTTTAAGTATGGGATACATTTTTTTTGTCAGTTTAAGATTGAATCATTTTTCT
CGATAATATAGAATTTGGTCATATGAGTTTGACACTCAAATTTAAATAATTTAAAATTAATTGTC
TTCTCATTCTAAGTTTGGGATACATTCTTTTATGATAGTTTTGGATTAAATCATTTTTTCTCTCT
CGATTATATAAAATTTTGTCATACGAGTTCGATACTCAAATTTGAATCATTTGAAATGAACTCTC
TTCATCATTCTAAGTTGGTAATACATTTTTCTATGTCGGTTTCAAATTGAATAATTTTTTTTCTC
TCAATAATATCATGTTTTT
Found at i:50093422 original size:257 final size:254
Alignment explanation
Indices: 50093040--50094046 Score: 1143
Period size: 257 Copynumber: 3.9 Consensus size: 254
50093030 TCATGTTTTT
* * * *
50093040 TTGTCTTCATCATTTTAAGTTTGGGATACATTTTTTTTGTCAGTTTCGGATTGAATCATTTTTTC
1 TTGTCTTCATCATTCTAAGTTTGGAATACATTTTTTATGTCAGTTTCAGATTGAATCATTTTTTC
* * * * * * * * * *
50093105 TTGATAATATCGAATTTGGTCATATGAGTTTGATACTCAAATTTGAATTATTTAAAATTAACTAT
66 TCGATAATATCGAGTTTTGTCATACGAGTTTGATACTCAAATCTAAATCATTTGAAATTAATTGT
* * * *
50093170 TTTTGTCATTCTAAGTTTGGGATACATTCTTTTATGTCAGTTTTGGATTGAATCATTTTTTCTCT
131 CTTCGTCATTCTAAGTTTGGGATACATTCTTTTATGTCGGTTTCGGATTGAATCA-TTTTTCTCT
** ** * *
50093235 CGTTAATATAAAATTTTGTCATACGAGTTTGATACTCGAATTTGAATCATTTGAAATTAA
195 CAATAATATCGAGTTTTGTCATATGAGTTTGATACTCGAATTTGAATCATTTGAAATTAA
* ** *
50093295 TTCTCTTCATCATTCTAAGTTTGGAATACATTTTTCTATGTTGGTTTCA-AGTTGAATAATTTTT
1 TTGTCTTCATCATTCTAAGTTTGGAATACATTTTT-TATGTCAGTTTCAGA-TTGAATCATTTTT
*
50093359 TCCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCAAATCTAAATCATTTGAAATTAAT
64 T-CTCGATAATATCGAGTTTTGTCATACGAGTTTGATACTCAAATCTAAATCATTTGAAATTAAT
*
50093424 TGTCTTCGTCATT-TAAGTTTGGGATACATT-TTGTTATGTCGGCTTC-GAGTTGAATCATTTTT
128 TGTCTTCGTCATTCTAAGTTTGGGATACATTCTT-TTATGTCGGTTTCGGA-TTGAATCATTTTT
* *
50093486 CTCT-ATATAATATCGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAATCATTTGAAATTAT
191 CTCTCA-ATAATATCGAGTTTTGTCATATGAGTTTGATACTCGAATTTGAATCATTTGAAATTAA
* * * * *
50093550 TTGTCTTCATTATTCTAAATTTGGGATACATTTTTTTATATCGGTTTC-GAATTGAATCATTTTT
1 TTGTCTTCATCATTCTAAGTTTGGAATACA-TTTTTTATGTCAGTTTCAG-ATTGAATCA-TTTT
* ** * *
50093614 CTCTCTCGATAATATCGAGTTTTGTCAAACGAGTTTGATACTTGAATTTGAATCATTTGAAATTA
63 -T-TCTCGATAATATCGAGTTTTGTCATACGAGTTTGATACTCAAATCTAAATCATTTGAAATTA
* * *
50093679 GTTGTCTTCGTCATTCTAAGTTTGGAATACATTCTTTTATGTCGGTTTCGGGTTGAATCATTTTT
126 ATTGTCTTCGTCATTCTAAGTTTGGGATACATTCTTTTATGTCGGTTTCGGATTGAATCATTTTT
* ** * * * *
50093744 C-CTCAATAATATTGAGTTTTGTTGTATGAGTCTGATACTCGAAATTGAATAATTTGAAAGTAA
191 CTCTCAATAATATCGAGTTTTGTCATATGAGTTTGATACTCGAATTTGAATCATTTGAAATTAA
** * ** * *
50093807 TTGTCTTTGTCATTCTAAGTTTGGATTACATTTTTTGATGTCACCTTCGGATTGAATCATTATTT
1 TTGTCTTCATCATTCTAAGTTTGGAATACATTTTTT-ATGTCAGTTTCAGATTGAATCATTTTTT
* ** * * * *
50093872 CTCGACAATATTTAGTCTTGTCATACAAGTTTGATACTCGAATCTAAAT-ATTTGAAACTAATTG
65 CTCGATAATATCGAGTTTTGTCATACGAGTTTGATACTCAAATCTAAATCATTTGAAATTAATTG
* * * * *
50093936 TCTTCATCATTCTAAGCTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAAT--TTTTTTTT
130 TCTTCGTCATTCTAAGTTTGGGATACA-TTCTTTTATGTCGGTTTCGGATTGAATCATTTTTCTC
** * *
50093999 TTGATAATATCGAGTTTTGTCATATGAGTTTGATAATCAAATTTGAAT
194 TCAATAATATCGAGTTTTGTCATATGAGTTTGATACTCGAATTTGAAT
50094047 AATTGTCTTT
Statistics
Matches: 638, Mismatches: 94, Indels: 42
0.82 0.12 0.05
Matches are distributed among these distances:
252 5 0.01
253 76 0.12
254 66 0.10
255 141 0.22
256 76 0.12
257 226 0.35
258 45 0.07
259 3 0.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (254 bp):
TTGTCTTCATCATTCTAAGTTTGGAATACATTTTTTATGTCAGTTTCAGATTGAATCATTTTTTC
TCGATAATATCGAGTTTTGTCATACGAGTTTGATACTCAAATCTAAATCATTTGAAATTAATTGT
CTTCGTCATTCTAAGTTTGGGATACATTCTTTTATGTCGGTTTCGGATTGAATCATTTTTCTCTC
AATAATATCGAGTTTTGTCATATGAGTTTGATACTCGAATTTGAATCATTTGAAATTAA
Found at i:50093505 original size:127 final size:126
Alignment explanation
Indices: 50093040--50094046 Score: 1059
Period size: 127 Copynumber: 7.9 Consensus size: 126
50093030 TCATGTTTTT
* * *
50093040 TTGTCTTCATCATTTTAAGTTTGGGATACATTTTTTTTGTCAGTTTCGGATTGAATCATTTTT-T
1 TTGTCTTCATCATTCTAAGTTTGGGATACATTTTTTATGTCGGTTTCGGATTGAATCATTTTTCT
* * * *
50093104 CTTGATAATATCGAATTTGGTCATATGAGTTTGATACTCAAATTTGAATTATTTAAAATTAA
66 CTT-ATAATATCGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTGAAATTAA
* * * ** * *
50093166 CTATTTTTGTCATTCTAAGTTTGGGATACATTCTTTTATGTCAGTTTTGGATTGAATCATTTTTT
1 TTGTCTTCATCATTCTAAGTTTGGGATACATT-TTTTATGTCGGTTTCGGATTGAATCA-TTTTT
** * * *
50093231 CTCTCGT-TAATATAAAATTTTGTCATACGAGTTTGATACTCGAATTTGAATCATTTGAAATTAA
64 CTCT--TATAATATCGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTGAAATTAA
* * * * *
50093295 TTCTCTTCATCATTCTAAGTTTGGAATACATTTTTCTATGTTGGTTTC-AAGTTGAATAATTTTT
1 TTGTCTTCATCATTCTAAGTTTGGGATACATTTTT-TATGTCGGTTTCGGA-TTGAATCATTTTT
* * *
50093359 -TCCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCAAATCTAAATCATTTGAAATTAA
64 CT-CT-TATAATATCGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTGAAATTAA
* *
50093423 TTGTCTTCGTCATT-TAAGTTTGGGATACATTTTGTTATGTCGGCTTC-GAGTTGAATCATTTTT
1 TTGTCTTCATCATTCTAAGTTTGGGATACATTTT-TTATGTCGGTTTCGGA-TTGAATCATTTTT
** *
50093486 CTCTATATAATATCGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAATCATTTGAAATTAT
64 CTCT-TATAATATCGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTGAAATTAA
* * * *
50093550 TTGTCTTCATTATTCTAAATTTGGGATACATTTTTTTATATCGGTTTCGAATTGAATCATTTTTC
1 TTGTCTTCATCATTCTAAGTTTGGGATACA-TTTTTTATGTCGGTTTCGGATTGAATCATTTTTC
* * ** *
50093615 TCTCTCGATAATATCGAGTTTTGTCAAACGAGTTTGATACTTGAATTTGAATCATTTGAAATTAG
65 TCT-T--ATAATATCGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTGAAATTAA
* * *
50093680 TTGTCTTCGTCATTCTAAGTTTGGAATACATTCTTTTATGTCGGTTTCGGGTTGAATCATTTTTC
1 TTGTCTTCATCATTCTAAGTTTGGGATACATT-TTTTATGTCGGTTTCGGATTGAATCATTTTTC
* * ** * * *
50093745 -CTCAATAATATTGAGTTTTGTTGTATGAGTCTGATACTCGAAA-TTGAATAATTTGAAAGTAA
65 TCT-TATAATATCGAGTTTTGTCATATGAGTTTGATACTC-AAATTTGAATCATTTGAAATTAA
** ***
50093807 TTGTCTTTGTCATTCTAAGTTT-GGATTACATTTTTTGATGTCACCTTCGGATTGAATCATTATT
1 TTGTCTTCATCATTCTAAGTTTGGGA-TACATTTTTT-ATGTCGGTTTCGGATTGAATCATT-TT
* * ** * ** * * * *
50093871 TCTC-GACAATATTTAGTCTTGTCATACAAGTTTGATACTCGAATCTAAAT-ATTTGAAACTAA
63 TCTCTTATAATATCGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTGAAATTAA
*
50093933 TTGTCTTCATCATTCTAAGCTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAAT--TTTTT
1 TTGTCTTCATCATTCTAAGTTTGGGATACA--TTTTTTATGTCGGTTTCGGATTGAATCATTTTT
* * *
50093996 TTTTTGATAATATCGAGTTTTGTCATATGAGTTTGATAATCAAATTTGAAT
64 CTCTT-ATAATATCGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAAT
50094047 AATTGTCTTT
Statistics
Matches: 737, Mismatches: 116, Indels: 56
0.81 0.13 0.06
Matches are distributed among these distances:
124 4 0.01
125 2 0.00
126 103 0.14
127 276 0.37
128 135 0.18
129 106 0.14
130 110 0.15
131 1 0.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (126 bp):
TTGTCTTCATCATTCTAAGTTTGGGATACATTTTTTATGTCGGTTTCGGATTGAATCATTTTTCT
CTTATAATATCGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATCATTTGAAATTAA
Found at i:50093755 original size:384 final size:381
Alignment explanation
Indices: 50093040--50094046 Score: 1260
Period size: 384 Copynumber: 2.6 Consensus size: 381
50093030 TCATGTTTTT
* * *
50093040 TTGTCTTCATCATTTTAAGTTTGGGATACATTTTTTTTGTCAGTTTCGGATTGAATCATTTTT-T
1 TTGTCTTCGTCA-TTTAAGTTTGGGATACATTTTTTATGTCAGCTTCGGATTGAATCATTTTTCT
* * * * * *
50093104 CTTGATAATATCGAATTTGGTCATATGAGTTTGATACTCAAATTTGAATTATTTAAAATTAACTA
65 CTT-ATAATATCGAGTTTTGTCATATGAGTTTGATACTCGAATTTGAA-TATTTGAAATTAATTG
* ** * * *
50093169 TTTTTGTCATTCTAAGTTTGGGATACATTCTTTTATGTCAGTTTTGGATTGAATCATTTTTTCTC
128 TCTTCATCATTCTAAGTTTGGGATACATTTTTTTATGTCGGTTTCGGATTGAATCATTTTTTCTC
* ** *
50093234 TCGTTAATATAAAATTTTGTCATACGAGTTTGATACTCGAATTTGAATCATTTGAAATTAATTCT
193 TCGATAATATCGAGTTTTGTCATACGAGTTTGATACTCGAATTTGAATCATTTGAAATTAATTCT
*
50093299 CTTCATCATTCTAAGTTTGGAATACATTTTTCTATGTTGGTTTCAAGTTGAATAATTTTTTCCTC
258 CTTCATCATTCTAAGTTTGGAATACATTTTTCTATGTCGGTTTCAAGTTGAATAATTTTTTCCTC
* * * *
50093364 GATAATATCGAGTTTTGTCATATGAGTTTGATACTC-AAATCTAAATCATTTGAAATTAA
323 AATAATATCGAGTTTTGTCATATGAGTCTGATACTCGAAAT-TAAATAATTTGAAAGTAA
*
50093423 TTGTCTTCGTCATTTAAGTTTGGGATACATTTTGTTATGTCGGCTTC-GAGTTGAATCATTTTTC
1 TTGTCTTCGTCATTTAAGTTTGGGATACATTTT-TTATGTCAGCTTCGGA-TTGAATCATTTTTC
* *
50093487 TCTATATAATATCGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAATCATTTGAAATTATTT
64 TCT-TATAATATCGAGTTTTGTCATATGAGTTTGATACTCGAATTTGAAT-ATTTGAAATTAATT
* * * *
50093552 GTCTTCATTATTCTAAATTTGGGATACATTTTTTTATATCGGTTTCGAATTGAATCATTTTTCTC
127 GTCTTCATCATTCTAAGTTTGGGATACATTTTTTTATGTCGGTTTCGGATTGAATCATTTTT-TC
* * *
50093617 TCTCGATAATATCGAGTTTTGTCAAACGAGTTTGATACTTGAATTTGAATCATTTGAAATTAGTT
191 TCTCGATAATATCGAGTTTTGTCATACGAGTTTGATACTCGAATTTGAATCATTTGAAATTAATT
* * ** *
50093682 GTCTTCGTCATTCTAAGTTTGGAATACATTCTTT-TATGTCGGTTTCGGGTTGAATCA-TTTTTC
256 CTCTTCATCATTCTAAGTTTGGAATACATT-TTTCTATGTCGGTTTCAAGTTGAATAATTTTTTC
* ** *
50093745 CTCAATAATATTGAGTTTTGTTGTATGAGTCTGATACTCGAAATTGAATAATTTGAAAGTAA
320 CTCAATAATATCGAGTTTTGTCATATGAGTCTGATACTCGAAATTAAATAATTTGAAAGTAA
* *
50093807 TTGTCTTTGTCATTCTAAGTTT-GGATTACATTTTTTGATGTCACCTTCGGATTGAATCATTATT
1 TTGTCTTCGTCATT-TAAGTTTGGGA-TACATTTTTT-ATGTCAGCTTCGGATTGAATCATT-TT
* * ** * ** * * *
50093871 TCTC-GACAATATTTAGTCTTGTCATACAAGTTTGATACTCGAATCTAAATATTTGAAACTAATT
62 TCTCTTATAATATCGAGTTTTGTCATATGAGTTTGATACTCGAATTTGAATATTTGAAATTAATT
*
50093935 GTCTTCATCATTCTAAGCTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAAT--TTTTTT-
127 GTCTTCATCATTCTAAGTTTGGGATACA-TTTTTTTATGTCGGTTTCGGATTGAATCATTTTTTC
* * * * *
50093997 TTTTGATAATATCGAGTTTTGTCATATGAGTTTGATAATCAAATTTGAAT
191 TCTCGATAATATCGAGTTTTGTCATACGAGTTTGATACTCGAATTTGAAT
50094047 AATTGTCTTT
Statistics
Matches: 540, Mismatches: 70, Indels: 31
0.84 0.11 0.05
Matches are distributed among these distances:
380 43 0.08
381 1 0.00
382 28 0.05
383 72 0.13
384 239 0.44
385 146 0.27
386 11 0.02
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (381 bp):
TTGTCTTCGTCATTTAAGTTTGGGATACATTTTTTATGTCAGCTTCGGATTGAATCATTTTTCTC
TTATAATATCGAGTTTTGTCATATGAGTTTGATACTCGAATTTGAATATTTGAAATTAATTGTCT
TCATCATTCTAAGTTTGGGATACATTTTTTTATGTCGGTTTCGGATTGAATCATTTTTTCTCTCG
ATAATATCGAGTTTTGTCATACGAGTTTGATACTCGAATTTGAATCATTTGAAATTAATTCTCTT
CATCATTCTAAGTTTGGAATACATTTTTCTATGTCGGTTTCAAGTTGAATAATTTTTTCCTCAAT
AATATCGAGTTTTGTCATATGAGTCTGATACTCGAAATTAAATAATTTGAAAGTAA
Found at i:50094200 original size:107 final size:106
Alignment explanation
Indices: 50094080--50094400 Score: 321
Period size: 109 Copynumber: 3.0 Consensus size: 106
50094070 GTGTTTCAGA
*
50094080 TTGAATCATTTTTTCTCTTATAATATCGAGTTTTGTTATATGAGTTTGATACTTGAATTTGAATC
1 TTGAAT-A-TTTTTCTCTTATAATATCGAGTTTTGTTATATGAGTTTGATACTCGAATTTGAATC
*
50094145 ATTTG-AATTAACTGTC-TTAGCCATTCT-ATGTTTGGAATACATATT
64 ATTTGAAATTAATTGTCTTTA-CCATTCTAAT-TTTGGAAT--A-ATT
* * * * *
50094190 TTG-ATGTTTTTC-CTCAATAATATCGAGTTTTGTCATATAAGTTTGATACTCGAATTTAAATCA
1 TTGAATATTTTTCTCT-TATAATATCGAGTTTTGTTATATGAGTTTGATACTCGAATTTGAATCA
* * *
50094253 TTTGAAATTAATTGTCTTTATCATTTTAATTTTGGGATAATT
65 TTTGAAATTAATTGTCTTTACCATTCTAATTTTGGAATAATT
* * * *
50094295 TTGAATATTTTT-TCTTGATAATATCAAGTTTTTCTTTCATATGAGTTTAATACTCAAATTTGAA
1 TTGAATATTTTTCTCTT-ATAATATCGAG-TTTT-GTT-ATATGAGTTTGATACTCGAATTTGAA
* * * * *
50094359 TCATTTGAAATTAATTGTCATCATCATTCTAAATTTGAAATA
62 TCATTTGAAATTAATTGTCTTTACCATTCTAATTTTGGAATA
50094401 TTCTGGAGTT
Statistics
Matches: 176, Mismatches: 25, Indels: 21
0.79 0.11 0.09
Matches are distributed among these distances:
105 6 0.03
106 22 0.12
107 57 0.32
108 23 0.13
109 65 0.37
110 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.48
Consensus pattern (106 bp):
TTGAATATTTTTCTCTTATAATATCGAGTTTTGTTATATGAGTTTGATACTCGAATTTGAATCAT
TTGAAATTAATTGTCTTTACCATTCTAATTTTGGAATAATT
Found at i:50096438 original size:199 final size:199
Alignment explanation
Indices: 50096089--50097274 Score: 1295
Period size: 199 Copynumber: 5.9 Consensus size: 199
50096079 AAAAAAGAAG
* * ***
50096089 AAGCTCCTTTTAGTAGTTAAGCTAGACAAGGCTTCGATTGCGGGACAAGCAAATGCTTGTACC-A
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGT-CCGA
* *** * * * *
50096153 CACATATTTGTATCTGACATTTATGCTTGAGTCCGAGTAATATAAGC-TAAAGTCAAGCTTTAGC
65 TACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTTAAA-TCGAGCTTTAGC
* ** * * * *
50096217 CATTGGCTAATGGTGGCCCCAGAATCTTATCCAGGTGGTCTGAGGTGTGAAGAGGCTCCAAATGC
129 CATTGCCTAATGGTAACCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGC
50096282 CTTAAA
194 CTTAAA
* * * *
50096288 AAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGCTTGTCCAAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCGAT
* * * *
50096353 ACATATTCATATCTGATACTCATGTTTGAGTCCGAGTAACATAAGCTTAAATCGAGCTTTAGCCG
66 ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTTAAATCGAGCTTTAGCCA
* * * *
50096418 TTGCCTAATGGTAACCCCAGAGTCTTATCTAGGTGATTTAAGGCGTGAAGAGGATCCAATTGCCT
131 TTGCCTAATGGTAACCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCCT
50096483 TAAA
196 TAAA
* * * * *
50096487 AAGTTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTCCAGGATTTGCAAATGCTTGTCTGGA
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTC-CGA
* * * * * * * *
50096552 -ACATATCCGTATCTGAAACTCACATGCTCGAGTTCTAATAACATAAGCTCAAATTGAGCTTTAG
65 TACATATCCATATCTGACACT--CATGCTTGAGTCCGAGTAACATAAGCTTAAATCGAGCTTTAG
*
50096616 CCATTTCCTAATGGTAACCCCAGAATC---T-TA-----TTTAA-GTGTGAAGAGGCTCCAATTG
128 CCATTGCCTAATGGTAACCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
*
50096671 CCTTTAA
193 CCTTAAA
* ** * * *
50096678 AAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGTGGGATTCGTAAATGCTTGCCGGAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTT----G-T
* * * *
50096743 AGGACCAATACATATCCATGTCTGACAGTCATGTTTGAGTCCGAGTAACATAAGCTTAAATCGAG
61 ----CCGATACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTTAAATCGAG
* *
50096808 CTTTAGCCATTGCCTAATGGTAACCCAAGAATCTTATCTGGGTGGTTTAAGGTGTGAAGAGGCTC
122 CTTTAGCCATTGCCTAATGGTAACCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTC
50096873 CAATTGCCTTAAA
187 CAATTGCCTTAAA
** * * *
50096886 AAGCTCCTTTTAGTAGTTAAGCTGGACAAGGCTTTGATTCCGGGATTTGCCAATGCTTGTCCGGT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCGAT
* * * * * *
50096951 ACATATCCATAGTTTGACACTCATGCTTGACTCTGAGTAACATAAGCTCAAATTGAGCTTTAGAC
66 ACATATCCATA-TCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTTAAATCGAGCTTTAGCC
* *** * * * *
50097016 ATTGCTTGCCGGTAGCCCCAAAATCTTATTATAGGTGGTTTAAGGTGTGAAGAGCCTCCAATTGC
130 ATTGCCTAATGGTAACCCCAGAATCTTA-TCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGC
50097081 CTTAAA
194 CTTAAA
* * ** **
50097087 AACCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTTGATTTTGGGATTCACAAATGCTTGTCCGAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCGAT
*
50097152 ACATATCCATATCTGACACTCATGTTTGAG-CCTGAGTAACATAAGCTTAAATCGAGCTTTAGCC
66 ACATATCCATATCTGACACTCATGCTTGAGTCC-GAGTAACATAAGCTTAAATCGAGCTTTAGCC
* ** *
50097216 ATCAG-CTAACAGTAGCCCCAGAATCTTATCATAGGTGGTTTAAGGTGTGAAGAGGCTCC
130 AT-TGCCTAATGGTAACCCCAGAATCTTATC-TAGGTGGTTTAAGGTGTGAAGAGGCTCC
50097275 TATTTTTACC
Statistics
Matches: 823, Mismatches: 134, Indels: 59
0.81 0.13 0.06
Matches are distributed among these distances:
191 72 0.09
192 5 0.01
195 1 0.00
196 1 0.00
197 2 0.00
198 63 0.08
199 252 0.31
200 179 0.22
201 166 0.20
202 1 0.00
203 1 0.00
204 1 0.00
207 5 0.01
208 74 0.09
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31
Consensus pattern (199 bp):
AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCGAT
ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTTAAATCGAGCTTTAGCCA
TTGCCTAATGGTAACCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCCT
TAAA
Found at i:50096830 original size:399 final size:393
Alignment explanation
Indices: 50096259--50097270 Score: 1311
Period size: 399 Copynumber: 2.5 Consensus size: 393
50096249 AGGTGGTCTG
* * * *
50096259 AGGTGTGAAGAGGCTCCAAATGCCTTAAAAAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGG
1 AGGTGTGAAGAGGCTCCAATTGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCG
** * * *
50096324 ATTGCAGGATTTGCAAATGCTTGTCCAATACATATTCATATCTGATACTCATGTTTGAGTCCGAG
66 ATTGTGGGATTCGCAAATGCTTGTCCAATACATATCCATATCTGACACTCATGTTTGAGTCCGAG
* * *
50096389 TAACATAAGCTTAAATCGAGCTTTAGCCGTTGCCTAATGGTAACCCCAGAGTCTTATCTAGGTGA
131 TAACATAAGCTTAAATCGAGCTTTAGCCATTGCCTAATGGTAACCCCAGAATCTTATCTAGGTGG
* *
50096454 TTTAAGGCGTGAAGAGGATCCAATTGCCTTAAAAAGTTCCTTTTAGTAGTTAAGCTAGACAAGGC
196 TTTAAGGTGTGAAGAGGATCCAATTGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCTAGACAAGGC
* *
50096519 TTTGATTCCAGGATTTGCAAATGCTTGTCTGGAACATATCCGTA-TCTGAAACTCACATGCTCGA
261 TTTGATTCCAGGATTTGCAAATGCTTGTCCGGAACATATCCATAGTCTGAAACT--CATGCTCGA
* * * * *
50096583 GTTCT-AATAACATAAGCTCAAATTGAGCTTTAGCCATTTCCTAATGGTAACCCCAGAATC-T-T
324 -CTCTGAATAACATAAGCTCAAATTGAGCTTTAGACATTGCCTAACGGTAACCCCAAAATCTTAT
50096645 A-TTTA
388 AGTTTA
* *
50096650 A-GTGTGAAGAGGCTCCAATTGCCTTTAAAAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCA
1 AGGTGTGAAGAGGCTCCAATTGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCG
* * *
50096714 ATTGTGGGATTCGTAAATGCTTGCCGGATAGGACCAATACATATCCATGTCTGACAGTCATGTTT
66 ATTGTGGGATTCGCAAATGCTT----G-T----CCAATACATATCCATATCTGACACTCATGTTT
*
50096779 GAGTCCGAGTAACATAAGCTTAAATCGAGCTTTAGCCATTGCCTAATGGTAACCCAAGAATCTTA
122 GAGTCCGAGTAACATAAGCTTAAATCGAGCTTTAGCCATTGCCTAATGGTAACCCCAGAATCTTA
* *
50096844 TCTGGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCT
187 TCTAGGTGGTTTAAGGTGTGAAGAGGATCCAATTGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCT
* * * * * *
50096909 GGACAAGGCTTTGATTCCGGGATTTGCCAATGCTTGTCCGGTACATATCCATAGTTTGACACTCA
252 AGACAAGGCTTTGATTCCAGGATTTGCAAATGCTTGTCCGGAACATATCCATAGTCTGAAACTCA
* * * ** *
50096974 TGCTTGACTCTGAGTAACATAAGCTCAAATTGAGCTTTAGACATTGCTTGCCGGTAGCCCCAAAA
317 TGCTCGACTCTGAATAACATAAGCTCAAATTGAGCTTTAGACATTGCCTAACGGTAACCCCAAAA
50097039 TCTTATTATAGGTGGTTTA
382 TC---TTATA----GTTTA
* * *
50097058 AGGTGTGAAGAGCCTCCAATTGCCTTAAAAACCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTTG
1 AGGTGTGAAGAGGCTCCAATTGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCG
* * *
50097123 ATTTTGGGATTCACAAATGCTTGTCCGATACATATCCATATCTGACACTCATGTTTGAG-CCTGA
66 ATTGTGGGATTCGCAAATGCTTGTCCAATACATATCCATATCTGACACTCATGTTTGAGTCC-GA
* ** *
50097187 GTAACATAAGCTTAAATCGAGCTTTAGCCATCAG-CTAACAGTAGCCCCAGAATCTTATCATAGG
130 GTAACATAAGCTTAAATCGAGCTTTAGCCAT-TGCCTAATGGTAACCCCAGAATCTTATC-TAGG
50097251 TGGTTTAAGGTGTGAAGAGG
193 TGGTTTAAGGTGTGAAGAGG
50097271 CTCCTATTTT
Statistics
Matches: 538, Mismatches: 58, Indels: 40
0.85 0.09 0.06
Matches are distributed among these distances:
390 75 0.14
391 1 0.00
394 1 0.00
395 1 0.00
397 3 0.01
398 54 0.10
399 199 0.37
400 93 0.17
401 24 0.04
402 1 0.00
403 2 0.00
404 1 0.00
405 1 0.00
408 5 0.01
409 77 0.14
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31
Consensus pattern (393 bp):
AGGTGTGAAGAGGCTCCAATTGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCG
ATTGTGGGATTCGCAAATGCTTGTCCAATACATATCCATATCTGACACTCATGTTTGAGTCCGAG
TAACATAAGCTTAAATCGAGCTTTAGCCATTGCCTAATGGTAACCCCAGAATCTTATCTAGGTGG
TTTAAGGTGTGAAGAGGATCCAATTGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCTAGACAAGGC
TTTGATTCCAGGATTTGCAAATGCTTGTCCGGAACATATCCATAGTCTGAAACTCATGCTCGACT
CTGAATAACATAAGCTCAAATTGAGCTTTAGACATTGCCTAACGGTAACCCCAAAATCTTATAGT
TTA
Found at i:50102945 original size:22 final size:22
Alignment explanation
Indices: 50102920--50102964 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
50102910 CATATGAATT
*
50102920 ATGATCATTAATTATATATATA
1 ATGACCATTAATTATATATATA
**
50102942 ATGACCATTTTTTATATATATA
1 ATGACCATTAATTATATATATA
50102964 A
1 A
50102965 ATGGAAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (22 bp):
ATGACCATTAATTATATATATA
Found at i:50104714 original size:40 final size:41
Alignment explanation
Indices: 50104656--50104743 Score: 126
Period size: 40 Copynumber: 2.1 Consensus size: 41
50104646 ATTATAGAAG
* *
50104656 AGAAGAAAATGAGAGCTTTAGATTGGTGTA-AGTGGTGTGAAC
1 AGAAG-AAATGAGAGCTTTAGATTAGTGTAGA-TAGTGTGAAC
50104698 A-AAGAAATGAGAGCTTTAGATTAGTGTAGATAGTGTGAAC
1 AGAAGAAATGAGAGCTTTAGATTAGTGTAGATAGTGTGAAC
50104738 AGAAGA
1 AGAAGA
50104744 TGACATATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
40 33 0.79
41 8 0.19
42 1 0.02
ACGTcount: A:0.40, C:0.05, G:0.31, T:0.25
Consensus pattern (41 bp):
AGAAGAAATGAGAGCTTTAGATTAGTGTAGATAGTGTGAAC
Found at i:50115484 original size:3 final size:3
Alignment explanation
Indices: 50115476--50115502 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
50115466 TGACTCTTAC
50115476 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
50115503 ATCCACTAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:50115947 original size:6 final size:6
Alignment explanation
Indices: 50115900--50115928 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
50115890 ACCAGTTTTT
50115900 AATTAA AATTAA AATTAA AATTAA AATTA
1 AATTAA AATTAA AATTAA AATTAA AATTA
50115929 TTTTTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AATTAA
Found at i:50115980 original size:16 final size:16
Alignment explanation
Indices: 50115943--50115982 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
50115933 TTAATAAAAT
* *
50115943 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
50115959 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
50115975 TAAAATTA
1 TAAAATTA
50115983 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:50115982 original size:22 final size:22
Alignment explanation
Indices: 50115915--50115967 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
50115905 AAATTAAAAT
* * *
50115915 TAAAATTAAAATTATTTTTTAA
1 TAAAATTAAAACTAATTGTTAA
*
50115937 TAAAATTAAAACTAATTGTTAT
1 TAAAATTAAAACTAATTGTTAA
50115959 TAAAATTAA
1 TAAAATTAA
50115968 TTGTTAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
TAAAATTAAAACTAATTGTTAA
Found at i:50116045 original size:59 final size:59
Alignment explanation
Indices: 50115971--50116097 Score: 236
Period size: 59 Copynumber: 2.2 Consensus size: 59
50115961 AAATTAATTG
*
50115971 TTAGTAAAATTATCAAATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGA
1 TTAGTAAAATTATCAAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGA
*
50116030 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGA
1 TTAGTAAAATTATCAAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGA
50116089 TTAGTAAAA
1 TTAGTAAAA
50116098 CAAACTTGAT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 65 1.00
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.43
Consensus pattern (59 bp):
TTAGTAAAATTATCAAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGA
Found at i:50116544 original size:13 final size:13
Alignment explanation
Indices: 50116506--50116547 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
50116496 TTTTATCATC
50116506 AATAAAGTGAAATAA
1 AATAAAG-GAAAT-A
*
50116521 AATAAA-TAAATA
1 AATAAAGGAAATA
50116533 AATAAAGGAAATA
1 AATAAAGGAAATA
50116546 AA
1 AA
50116548 GTGATAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 7 0.29
13 11 0.46
15 6 0.25
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (13 bp):
AATAAAGGAAATA
Found at i:50126347 original size:3 final size:3
Alignment explanation
Indices: 50126339--50126402 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
50126329 GCCATTAGTC
50126339 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
50126387 TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
50126403 ATATCCCCTC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:50127049 original size:31 final size:31
Alignment explanation
Indices: 50127006--50127070 Score: 73
Period size: 31 Copynumber: 2.1 Consensus size: 31
50126996 TATGTATATC
50127006 ATTAATTAAAATA-A-TGTCTTAATATATTTTA
1 ATTAATTAAAATACAGT-TCTTAATAT-TTTTA
*
50127037 ATTAA-TATAAATACAGTTTTTAATATTTTTA
1 ATTAATTA-AAATACAGTTCTTAATATTTTTA
50127068 ATT
1 ATT
50127071 TGTAATTATC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
30 2 0.07
31 18 0.60
32 9 0.30
33 1 0.03
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (31 bp):
ATTAATTAAAATACAGTTCTTAATATTTTTA
Found at i:50127103 original size:35 final size:37
Alignment explanation
Indices: 50127063--50127138 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
50127053 TTTTTAATAT
* * * *
50127063 TTTTAATTTGTAATTAT-C-ATTTAACATAAATATTA
1 TTTTAATTTATAAATATACTATTGAACACAAATATTA
*
50127098 TTTTAATTTATAAATATACTATTGAATACAAATATTA
1 TTTTAATTTATAAATATACTATTGAACACAAATATTA
50127135 TTTT
1 TTTT
50127139 TGAAAATGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
35 15 0.44
36 1 0.03
37 18 0.53
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (37 bp):
TTTTAATTTATAAATATACTATTGAACACAAATATTA
Found at i:50131880 original size:39 final size:39
Alignment explanation
Indices: 50131831--50131912 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 39
50131821 AAAAGTTTGT
50131831 ATTT-TTAATTATAATTGATGTAATTACTAATTACTCAA
1 ATTTATTAATTATAATTGATGTAATTACTAATTACTCAA
50131869 ATTTATTAATTATAATTGATGTAATTACTAATTACTCAA
1 ATTTATTAATTATAATTGATGTAATTACTAATTACTCAA
50131908 ATTTA
1 ATTTA
50131913 AGTTATACTT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 4 0.09
39 39 0.91
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (39 bp):
ATTTATTAATTATAATTGATGTAATTACTAATTACTCAA
Found at i:50133666 original size:23 final size:23
Alignment explanation
Indices: 50133621--50133669 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
50133611 TTAAAAGTTG
*
50133621 AAATAGAAAATTAAAAATGAAAA
1 AAATAGAAAATTAAAAATAAAAA
* **
50133644 AAATTGAAAATTAAATTTAAAAA
1 AAATAGAAAATTAAAAATAAAAA
50133667 AAA
1 AAA
50133670 GACTAAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.22
Consensus pattern (23 bp):
AAATAGAAAATTAAAAATAAAAA
Found at i:50135732 original size:12 final size:12
Alignment explanation
Indices: 50135717--50135746 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
50135707 TCGGTGTTCT
50135717 TGGTGGCAGCAG
1 TGGTGGCAGCAG
50135729 TGGTGGCAGCAG
1 TGGTGGCAGCAG
50135741 TGGTGG
1 TGGTGG
50135747 GTGTTACGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.13, G:0.53, T:0.20
Consensus pattern (12 bp):
TGGTGGCAGCAG
Found at i:50142344 original size:50 final size:50
Alignment explanation
Indices: 50142265--50142456 Score: 278
Period size: 50 Copynumber: 3.8 Consensus size: 50
50142255 GATAATAACA
* * * ** *
50142265 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGAGATGTTCTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* **
50142316 TGCCCATGCCATGT-CCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
50142365 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
50142415 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
50142457 TTACCCGAAT
Statistics
Matches: 126, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
49 22 0.17
50 92 0.73
51 12 0.10
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:50142572 original size:13 final size:13
Alignment explanation
Indices: 50142551--50142580 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
50142541 GCTTGGATCA
50142551 TCATCAAATAAAT
1 TCATCAAATAAAT
*
50142564 TCATGAAATAAAT
1 TCATCAAATAAAT
50142577 TCAT
1 TCAT
50142581 AGTTGCTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:50142845 original size:29 final size:30
Alignment explanation
Indices: 50142794--50142850 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
50142784 CGTCGACTCT
50142794 AACTTTATCAAAATTACGATTTTACCCCTA
1 AACTTTATCAAAATTACGATTTTACCCCTA
* * *
50142824 AACTTTTTCATAATTAC-ATTTTTCCCC
1 AACTTTATCAAAATTACGATTTTACCCC
50142851 AAGGCCCGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.32, C:0.25, G:0.02, T:0.42
Consensus pattern (30 bp):
AACTTTATCAAAATTACGATTTTACCCCTA
Found at i:50144982 original size:15 final size:15
Alignment explanation
Indices: 50144958--50144992 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
50144948 ATTTTACATG
50144958 ATAA-TATTATGATT
1 ATAATTATTATGATT
*
50144972 ATAATTATTATTATT
1 ATAATTATTATGATT
50144987 ATAATT
1 ATAATT
50144993 GCTGCTCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
ATAATTATTATGATT
Found at i:50152989 original size:13 final size:13
Alignment explanation
Indices: 50152971--50153002 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
50152961 ATAATAATGC
*
50152971 ATTTTTTAATATT
1 ATTTTTTAAAATT
50152984 ATTTTTTAAAATT
1 ATTTTTTAAAATT
50152997 ATTTTT
1 ATTTTT
50153003 AAATCATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTTTTAAAATT
Found at i:50155850 original size:7 final size:7
Alignment explanation
Indices: 50155839--50155916 Score: 138
Period size: 7 Copynumber: 11.1 Consensus size: 7
50155829 ATAAATATAT
*
50155839 ATTTTTT
1 ATTTTTA
50155846 ATTTTTA
1 ATTTTTA
*
50155853 TTTTTTA
1 ATTTTTA
50155860 ATTTTTA
1 ATTTTTA
50155867 ATTTTTA
1 ATTTTTA
50155874 ATTTTTA
1 ATTTTTA
50155881 ATTTTTA
1 ATTTTTA
50155888 ATTTTTA
1 ATTTTTA
50155895 ATTTTTA
1 ATTTTTA
50155902 ATTTTTA
1 ATTTTTA
50155909 ATTTTTA
1 ATTTTTA
50155916 A
1 A
50155917 ATACTTTTAA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 68 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
ATTTTTA
Found at i:50159157 original size:23 final size:23
Alignment explanation
Indices: 50159087--50159195 Score: 131
Period size: 23 Copynumber: 5.0 Consensus size: 23
50159077 CCTGATTAGT
50159087 ATACGACACAT-AAGTGCCTGA-
1 ATACGACACATAAAGTGCCTGAG
** *
50159108 A-ACGACACACGAGGTGCCT--G
1 ATACGACACATAAAGTGCCTGAG
50159128 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
50159151 ATACGACACATAAAGTGCCTG-G
1 ATACGACACATAAAGTGCCTGAG
*
50159173 TGTACGACACATAAAGTGCCTGA
1 -ATACGACACATAAAGTGCCTGA
50159196 TCGGCAAAGC
Statistics
Matches: 75, Mismatches: 6, Indels: 11
0.82 0.07 0.12
Matches are distributed among these distances:
20 9 0.12
21 23 0.31
22 1 0.01
23 42 0.56
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAG
Found at i:50160951 original size:40 final size:40
Alignment explanation
Indices: 50160886--50160980 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 40
50160876 TGTTATACTC
* * *
50160886 TATGTCTGGTGTGTTTCGGTTGGATTAGCTCTTATGAGCT
1 TATGTCCGGCGTGTTTCAGTTGGATTAGCTCTTATGAGCT
*
50160926 TCTGTCCGGCGTGTTTCAGTTGGATTAGCTCTTATGAGCT
1 TATGTCCGGCGTGTTTCAGTTGGATTAGCTCTTATGAGCT
* *
50160966 TATGTCTGGTGTGTT
1 TATGTCCGGCGTGTT
50160981 CGGTTGATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.12, C:0.15, G:0.29, T:0.44
Consensus pattern (40 bp):
TATGTCCGGCGTGTTTCAGTTGGATTAGCTCTTATGAGCT
Found at i:50161699 original size:12 final size:13
Alignment explanation
Indices: 50161674--50161702 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
50161664 GATTAAAGTC
50161674 ATTTTGATTTGGT
1 ATTTTGATTTGGT
50161687 ATTTTGA-TTGGT
1 ATTTTGATTTGGT
50161699 ATTT
1 ATTT
50161703 GAGTTTCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (13 bp):
ATTTTGATTTGGT
Found at i:50161953 original size:12 final size:12
Alignment explanation
Indices: 50161938--50161962 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50161928 TTATATGTTT
50161938 TTTTATTTTTAA
1 TTTTATTTTTAA
50161950 TTTTATTTTTAA
1 TTTTATTTTTAA
50161962 T
1 T
50161963 AAATTTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTATTTTTAA
Found at i:50162126 original size:18 final size:18
Alignment explanation
Indices: 50162103--50162139 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
50162093 AGTGGGTATC
50162103 ACGATATCGAAGTATGGA
1 ACGATATCGAAGTATGGA
50162121 ACGATATCGAAGTATGGA
1 ACGATATCGAAGTATGGA
50162139 A
1 A
50162140 GTGTAATACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.11, G:0.27, T:0.22
Consensus pattern (18 bp):
ACGATATCGAAGTATGGA
Found at i:50164628 original size:15 final size:15
Alignment explanation
Indices: 50164608--50164641 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
50164598 AATAACCTTG
50164608 TTATTA-TTATTATTT
1 TTATTATTTATT-TTT
50164623 TTATTATTTATTTTT
1 TTATTATTTATTTTT
50164638 TTAT
1 TTAT
50164642 ATAATTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTATTATTTATTTTT
Found at i:50167806 original size:13 final size:14
Alignment explanation
Indices: 50167778--50167810 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
50167768 AATGTTGAAG
50167778 TTTGATTTTGTTTTT
1 TTTG-TTTTGTTTTT
50167793 TTTGTTTT-TTTTT
1 TTTGTTTTGTTTTT
50167806 TTTGT
1 TTTGT
50167811 GTACCAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 4 0.22
15 4 0.22
ACGTcount: A:0.03, C:0.00, G:0.12, T:0.85
Consensus pattern (14 bp):
TTTGTTTTGTTTTT
Found at i:50168410 original size:38 final size:39
Alignment explanation
Indices: 50168350--50168426 Score: 138
Period size: 38 Copynumber: 2.0 Consensus size: 39
50168340 ATCCAACCCA
*
50168350 ACCCAATTACCGAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCGAACCCAATAAAAATAAAACTAAAGTCT
50168389 ACCCAATTACC-AACCCAATAAAAATAAAACTAAAGTCT
1 ACCCAATTACCGAACCCAATAAAAATAAAACTAAAGTCT
50168427 GACTCTTAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 26 0.70
39 11 0.30
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (39 bp):
ACCCAATTACCGAACCCAATAAAAATAAAACTAAAGTCT
Found at i:50169453 original size:14 final size:13
Alignment explanation
Indices: 50169422--50169469 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
50169412 ATAATAATGC
50169422 ATTTTATAAAATT
1 ATTTTATAAAATT
*
50169435 ATTTTTTAAAATT
1 ATTTTATAAAATT
*
50169448 ATTTT-T-AAATC
1 ATTTTATAAAATT
50169459 ATTTTA-AAAAT
1 ATTTTATAAAAT
50169470 AATATTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 9 0.29
12 5 0.16
13 17 0.55
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:50169457 original size:11 final size:12
Alignment explanation
Indices: 50169422--50169479 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 12
50169412 ATAATAATGC
50169422 ATTTTATAAAATT
1 ATTTT-TAAAATT
50169435 ATTTTTTAAAATT
1 A-TTTTTAAAATT
*
50169448 ATTTTT-AAATC
1 ATTTTTAAAATT
* *
50169459 ATTTTAAAAATA
1 ATTTTTAAAATT
50169471 ATATTTTAA
1 AT-TTTTAA
50169480 TTAAAACTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
11 9 0.24
12 11 0.29
13 14 0.37
14 4 0.11
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (12 bp):
ATTTTTAAAATT
Found at i:50175065 original size:3 final size:3
Alignment explanation
Indices: 50175057--50175090 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
50175047 GCCAAATCCG
50175057 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
50175091 GTGTTTTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:50175950 original size:18 final size:19
Alignment explanation
Indices: 50175927--50175966 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
50175917 ACAAAGTAAT
*
50175927 ATATCTCCGTTTATA-AAC
1 ATATCTCCGTTCATACAAC
*
50175945 ATATCTTCGTTCATACAAC
1 ATATCTCCGTTCATACAAC
50175964 ATA
1 ATA
50175967 CACACTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.38
Consensus pattern (19 bp):
ATATCTCCGTTCATACAAC
Found at i:50187329 original size:13 final size:13
Alignment explanation
Indices: 50187311--50187337 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50187301 ATAATTTTAC
50187311 TATTTTTATTTTT
1 TATTTTTATTTTT
50187324 TATTTTTATTTTT
1 TATTTTTATTTTT
50187337 T
1 T
50187338 GAGTTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TATTTTTATTTTT
Found at i:50188002 original size:13 final size:13
Alignment explanation
Indices: 50187984--50188023 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
50187974 TGACATTTCA
50187984 GAGTTTA-ATGTTT
1 GAGTTTAGA-GTTT
50187997 GAGTTTAGAGTTT
1 GAGTTTAGAGTTT
50188010 GAGATTTAGAGTTT
1 GAG-TTTAGAGTTT
50188024 AAGATTCTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (13 bp):
GAGTTTAGAGTTT
Found at i:50188019 original size:14 final size:14
Alignment explanation
Indices: 50187993--50188029 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
50187983 AGAGTTTAAT
50187993 GTTTGAG-TTTAGA
1 GTTTGAGATTTAGA
50188006 GTTTGAGATTTAGA
1 GTTTGAGATTTAGA
*
50188020 GTTTAAGATT
1 GTTTGAGATT
50188030 CTGGATTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 7 0.32
14 15 0.68
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (14 bp):
GTTTGAGATTTAGA
Found at i:50195351 original size:80 final size:80
Alignment explanation
Indices: 50195247--50195398 Score: 270
Period size: 80 Copynumber: 1.9 Consensus size: 80
50195237 TGTACCACAA
50195247 GTTATATACTACGTGCCTATATATAAAACACAATAAT-ACTATTTTTATTATTCTATATTTGCTG
1 GTTATATACTACGTGCCTATATATAAAACACAATAATGAC-ATTTTTATTATTCTATATTTGCTG
50195311 TTTCAAGACGGTACAT
65 TTTCAAGACGGTACAT
* *
50195327 GTTATATACTACGTGTCTATATATAAAACTCAATAATGACATTTTTATTATTCTATATTTGCTGT
1 GTTATATACTACGTGCCTATATATAAAACACAATAATGACATTTTTATTATTCTATATTTGCTGT
50195392 TTCAAGA
66 TTCAAGA
50195399 GTTGTATTGT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
80 67 0.97
81 2 0.03
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.43
Consensus pattern (80 bp):
GTTATATACTACGTGCCTATATATAAAACACAATAATGACATTTTTATTATTCTATATTTGCTGT
TTCAAGACGGTACAT
Found at i:50206371 original size:3 final size:3
Alignment explanation
Indices: 50206363--50206401 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
50206353 ATGATCATGA
* * *
50206363 CAT CAT CAT CAT CAT CTT CTT CAT CAT CAT CAT CTT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
50206402 ACTGGGTTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (3 bp):
CAT
Found at i:50206388 original size:15 final size:15
Alignment explanation
Indices: 50206363--50206401 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
50206353 ATGATCATGA
*
50206363 CATCATCATCATCAT
1 CATCTTCATCATCAT
*
50206378 CTTCTTCATCATCAT
1 CATCTTCATCATCAT
50206393 CATCTTCAT
1 CATCTTCAT
50206402 ACTGGGTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (15 bp):
CATCTTCATCATCAT
Found at i:50206388 original size:18 final size:18
Alignment explanation
Indices: 50206365--50206399 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
50206355 GATCATGACA
50206365 TCATCATCATCATCTTCT
1 TCATCATCATCATCTTCT
50206383 TCATCATCATCATCTTC
1 TCATCATCATCATCTTC
50206400 ATACTGGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.34, G:0.00, T:0.43
Consensus pattern (18 bp):
TCATCATCATCATCTTCT
Found at i:50207857 original size:24 final size:25
Alignment explanation
Indices: 50207830--50207879 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
50207820 AATTATTGGA
* *
50207830 ATTAAT-AAATTTTATTTAAATATT
1 ATTAATAAAATTTGAATTAAATATT
*
50207854 ATTATTAAAATTTGAATTAAATATT
1 ATTAATAAAATTTGAATTAAATATT
50207879 A
1 A
50207880 CTTTTTGAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
ATTAATAAAATTTGAATTAAATATT
Found at i:50250350 original size:20 final size:22
Alignment explanation
Indices: 50250308--50250350 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
50250298 TGAAATCTAG
* *
50250308 ATAACTACACAACTACATGAAC
1 ATAACTACACAACTAAATCAAC
50250330 ATAACTACA-AA-TAAATCAAC
1 ATAACTACACAACTAAATCAAC
50250350 A
1 A
50250351 ATTGCAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
21 2 0.11
22 9 0.47
ACGTcount: A:0.56, C:0.23, G:0.02, T:0.19
Consensus pattern (22 bp):
ATAACTACACAACTAAATCAAC
Found at i:50257484 original size:19 final size:20
Alignment explanation
Indices: 50257446--50257486 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
50257436 AATGGTGCTA
*
50257446 AATTTTGATTAGTATTTAGC
1 AATTTTAATTAGTATTTAGC
*
50257466 AATTTTAATTTGT-TTTAGC
1 AATTTTAATTAGTATTTAGC
50257485 AA
1 AA
50257487 CTTGGCAGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.51
Consensus pattern (20 bp):
AATTTTAATTAGTATTTAGC
Found at i:50262495 original size:17 final size:17
Alignment explanation
Indices: 50262473--50262509 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
50262463 TCTATTAGAC
50262473 ATTTT-AAAAATGGTTCA
1 ATTTTAAAAAATGGTT-A
50262490 ATTTTAAAAAATGGTTA
1 ATTTTAAAAAATGGTTA
50262507 ATT
1 ATT
50262510 AAAAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (17 bp):
ATTTTAAAAAATGGTTA
Found at i:50264018 original size:73 final size:70
Alignment explanation
Indices: 50263871--50264097 Score: 216
Period size: 73 Copynumber: 3.2 Consensus size: 70
50263861 AGAATAGTAA
* * ***
50263871 ATAAATAGATAAAATAAATAATAAATAACATCAAATTTAAACGTTTAAAAAGTAAA-AGA-AA-A
1 ATAAATAGATAAAA-CAAT-ATAAATAACATTAAATTTAAGTATTTAAAAAGTAAAGA-ATAATA
*
50263933 AA-CAA--
63 AATAAATG
* *
50263938 ATAAATAGATAAAACACATATAAATAACATTCAATTTAAGTATTTAAAAGGTAATAGAATAATAA
1 ATAAATAGATAAAACA-ATATAAATAACATTAAATTTAAGTATTTAAAAAGTAA-AGAATAATAA
*
50264003 GTAAATAG
64 ATAAAT-G
* * *
50264011 ATAAATAGATAAAGCTAATATAAATAAGATTAAATTTAGGTATTTAAAAAGTAAAGAATAATAAA
1 ATAAATAGATAAAAC-AATATAAATAACATTAAATTTAAGTATTTAAAAAGTAAAGAATAATAAA
50264076 TAAATG
65 TAAATG
* *
50264082 A-ATATATATAAAACAA
1 ATAAATAGATAAAACAA
50264098 ATATGGATAG
Statistics
Matches: 132, Mismatches: 18, Indels: 18
0.79 0.11 0.11
Matches are distributed among these distances:
66 30 0.23
67 18 0.14
68 3 0.02
69 4 0.03
70 12 0.09
71 2 0.02
72 15 0.11
73 47 0.36
74 1 0.01
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.27
Consensus pattern (70 bp):
ATAAATAGATAAAACAATATAAATAACATTAAATTTAAGTATTTAAAAAGTAAAGAATAATAAAT
AAATG
Found at i:50277925 original size:16 final size:17
Alignment explanation
Indices: 50277892--50277929 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
50277882 TTTAGTTTAA
*
50277892 TTAATATAATTGATATT
1 TTAATAAAATTGATATT
50277909 TTAATAAAATT-ATATT
1 TTAATAAAATTGATATT
50277925 TTAAT
1 TTAAT
50277930 TTTCAGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTAATAAAATTGATATT
Found at i:50278775 original size:23 final size:24
Alignment explanation
Indices: 50278731--50278778 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
50278721 AAACAATGAG
50278731 AATAAAAGATTATGATAATTTAAAA
1 AATAAAAGA-TATGATAATTTAAAA
**
50278756 AATAAAAGA-ATGATTGTTTAAAA
1 AATAAAAGATATGATAATTTAAAA
50278779 CTTTTTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 12 0.57
25 9 0.43
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.31
Consensus pattern (24 bp):
AATAAAAGATATGATAATTTAAAA
Found at i:50296818 original size:2 final size:2
Alignment explanation
Indices: 50296813--50296846 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
50296803 AACATACTTT
50296813 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50296847 CGGATTATCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:50300665 original size:2 final size:2
Alignment explanation
Indices: 50300658--50300695 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
50300648 TTTTGGTTTT
50300658 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50300696 AAATTTATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:50301350 original size:35 final size:35
Alignment explanation
Indices: 50301311--50301379 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
50301301 ATAAAAAATT
* *
50301311 ATATTTTATATTTTTTAA-TTCAATTTAAATTTAAA
1 ATATTTT-TATTATTTAAGTTAAATTTAAATTTAAA
*
50301346 ATATTTTTATTATTTAAGTTAAATTTCAATTTAA
1 ATATTTTTATTATTTAAGTTAAATTTAAATTTAA
50301380 TCAAACCGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 9 0.30
35 21 0.70
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (35 bp):
ATATTTTTATTATTTAAGTTAAATTTAAATTTAAA
Found at i:50309880 original size:18 final size:18
Alignment explanation
Indices: 50309853--50309893 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
50309843 TTTATCATTC
* *
50309853 ACTTTTTTTTTTAGTTTT
1 ACTTTATTTTTAAGTTTT
*
50309871 ACTTTATTTTTAATTTTT
1 ACTTTATTTTTAAGTTTT
50309889 ACTTT
1 ACTTT
50309894 TAAAAGTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.73
Consensus pattern (18 bp):
ACTTTATTTTTAAGTTTT
Found at i:50323009 original size:29 final size:29
Alignment explanation
Indices: 50322950--50323014 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
50322940 AGAAATCTGG
* * **
50322950 TTAAATTAGTTCCTTTACTATTAAATGGA
1 TTAAATTAGTTCATGTACTATTAAAAAGA
* *
50322979 TTAACTTAGTTCATGTATTATTAAAAAGA
1 TTAAATTAGTTCATGTACTATTAAAAAGA
50323008 TTCAAAT
1 TT-AAAT
50323015 AAAGTTAAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
29 25 0.89
30 3 0.11
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.43
Consensus pattern (29 bp):
TTAAATTAGTTCATGTACTATTAAAAAGA
Found at i:50327991 original size:5 final size:5
Alignment explanation
Indices: 50327981--50328006 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
50327971 ATCCAATTTT
50327981 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
50328007 TTTACTCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:50332921 original size:28 final size:29
Alignment explanation
Indices: 50332861--50332921 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
50332851 AAAAACCCTT
*
50332861 TTTTTTCAATATTTACCGAAATGGGCCGG
1 TTTTTTCAATATTTACCGAAATGGGCCGA
* *
50332890 TTTTTT-AATTATTTACCGGAATGGTCC-A
1 TTTTTTCAA-TATTTACCGAAATGGGCCGA
50332918 TTTT
1 TTTT
50332922 CCACGAAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.23, C:0.15, G:0.16, T:0.46
Consensus pattern (29 bp):
TTTTTTCAATATTTACCGAAATGGGCCGA
Found at i:50345562 original size:31 final size:31
Alignment explanation
Indices: 50345527--50345592 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
50345517 TATTCATATT
* *
50345527 GTTATTTTCAGTTGGGCCATTTGACTAATGG
1 GTTATTTCCAGTTGGGACATTTGACTAATGG
* *
50345558 GTTATTTCCATTTGGGACATTTGATTAATGG
1 GTTATTTCCAGTTGGGACATTTGACTAATGG
50345589 GTTA
1 GTTA
50345593 AGCCCACTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.21, C:0.11, G:0.24, T:0.44
Consensus pattern (31 bp):
GTTATTTCCAGTTGGGACATTTGACTAATGG
Found at i:50346209 original size:6 final size:6
Alignment explanation
Indices: 50346198--50346228 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
50346188 AAATTTCGGG
50346198 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT T
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT T
50346229 ACTTTGGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAAAT
Found at i:50362038 original size:3 final size:3
Alignment explanation
Indices: 50362030--50362064 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
50362020 CATTGACGTA
50362030 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
50362065 ACTGACCTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:50362286 original size:21 final size:22
Alignment explanation
Indices: 50362260--50362302 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
50362250 TTAAAGCTTA
50362260 AACTGAAACC-AAAGGATTGAC
1 AACTGAAACCAAAAGGATTGAC
*
50362281 AACTGAAACCAAAAGGTTTGAC
1 AACTGAAACCAAAAGGATTGAC
50362303 CTTTAACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.16
Consensus pattern (22 bp):
AACTGAAACCAAAAGGATTGAC
Found at i:50367464 original size:7 final size:7
Alignment explanation
Indices: 50367452--50367479 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
50367442 CAAACAAACA
50367452 ATAATAT
1 ATAATAT
50367459 ATAATAT
1 ATAATAT
50367466 ATAATAT
1 ATAATAT
50367473 ATAATAT
1 ATAATAT
50367480 TAGGTAGGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
ATAATAT
Found at i:50374597 original size:19 final size:19
Alignment explanation
Indices: 50374573--50374609 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
50374563 CACACTAACA
50374573 TAATTAAAAATTATTATTT
1 TAATTAAAAATTATTATTT
* *
50374592 TAATTAAATATTTTTATT
1 TAATTAAAAATTATTATT
50374610 AAATAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TAATTAAAAATTATTATTT
Found at i:50387026 original size:79 final size:80
Alignment explanation
Indices: 50386938--50387085 Score: 235
Period size: 79 Copynumber: 1.9 Consensus size: 80
50386928 TTGATCCGCG
* * *
50386938 CATTAAAATCATGCTTTAATTTTGTTATAATATTATTGTTTTCGTGTGCTTTAAAAATATAAATT
1 CATTAAAATCATGCTTTAATTATGTTATAATATTATTATTTTCGTATGCTTTAAAAATATAAATT
50387003 TCAAATCGATCTGCA
66 TCAAATCGATCTGCA
* * *
50387018 CATT-AAATCGTGTTTTAATTATGTTATAATATTATTATTTTTGTATGCTTTAAAAATATAAATT
1 CATTAAAATCATGCTTTAATTATGTTATAATATTATTATTTTCGTATGCTTTAAAAATATAAATT
50387082 TCAA
66 TCAA
50387086 CAATAATGTT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 58 0.94
80 4 0.06
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (80 bp):
CATTAAAATCATGCTTTAATTATGTTATAATATTATTATTTTCGTATGCTTTAAAAATATAAATT
TCAAATCGATCTGCA
Found at i:50388495 original size:18 final size:19
Alignment explanation
Indices: 50388468--50388503 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
50388458 TCGAATTAAG
*
50388468 AAATACTTTTAT-TATTTT
1 AAATAATTTTATATATTTT
50388486 AAATAATTTTATATATTT
1 AAATAATTTTATATATTT
50388504 GCATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (19 bp):
AAATAATTTTATATATTTT
Found at i:50394622 original size:22 final size:21
Alignment explanation
Indices: 50394582--50394623 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
50394572 TCAACGTTTC
50394582 TTTAATAATTTTATTATATAT
1 TTTAATAATTTTATTATATAT
50394603 TTTAATCATATTTT-TTATATA
1 TTTAAT-A-ATTTTATTATATA
50394624 ATGTTTAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTAATAATTTTATTATATAT
Found at i:50395700 original size:21 final size:20
Alignment explanation
Indices: 50395564--50395702 Score: 76
Period size: 19 Copynumber: 7.0 Consensus size: 20
50395554 TAAAGAAAGG
50395564 TTGTAAAAAAA-TATTAAAA
1 TTGTAAAAAAATTATTAAAA
* ** *
50395583 AT-TATAAAAAA-GCTGAAAA
1 TTGTA-AAAAAATTATTAAAA
* *
50395602 TTATAAAAAAAATTAAATAAAA
1 TTGT-AAAAAAATT-ATTAAAA
* *
50395624 TAGT-ACAAAA-TATTAAAA
1 TTGTAAAAAAATTATTAAAA
* *
50395642 TTTGT-AAATAATTATCAAATA
1 -TTGTAAAAAAATTATTAAA-A
*
50395663 TTGTAAAAATATT-TTAAAA
1 TTGTAAAAAAATTATTAAAA
50395682 TTGTAAAAAAAGTTATTAAAA
1 TTGTAAAAAAA-TTATTAAAA
50395703 ATTATGAAGT
Statistics
Matches: 88, Mismatches: 21, Indels: 20
0.68 0.16 0.16
Matches are distributed among these distances:
18 8 0.09
19 32 0.36
20 28 0.32
21 14 0.16
22 6 0.07
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (20 bp):
TTGTAAAAAAATTATTAAAA
Found at i:50397610 original size:2 final size:2
Alignment explanation
Indices: 50397603--50397638 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
50397593 AAAGAACTAG
50397603 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50397639 AAAGTTTTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:50405121 original size:26 final size:27
Alignment explanation
Indices: 50405077--50405130 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
50405067 CCAAAATAAA
*
50405077 AGAAATAAGAATTATTAA-TATATTAC
1 AGAAATAAAAATTATTAATTATATTAC
*
50405103 AGAAATAAAAATGTA-TAATTTTATTAC
1 AGAAATAAAAAT-TATTAATTATATTAC
50405130 A
1 A
50405131 TTTATAACGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (27 bp):
AGAAATAAAAATTATTAATTATATTAC
Found at i:50412797 original size:31 final size:31
Alignment explanation
Indices: 50412762--50412828 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
50412752 GAAAACACTA
*
50412762 AAGTTCAAGCTCCAATG-GGAGAACAATTGTC
1 AAGTTCAAGCCCCAATGTGG-GAACAATTGTC
* * *
50412793 AAGTTCAGGCCCCAGTGTTGGAACAATTGTC
1 AAGTTCAAGCCCCAATGTGGGAACAATTGTC
50412824 AAGTT
1 AAGTT
50412829 TTGGGACTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (31 bp):
AAGTTCAAGCCCCAATGTGGGAACAATTGTC
Found at i:50420780 original size:28 final size:28
Alignment explanation
Indices: 50420748--50420801 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
50420738 CATAAATAAA
*
50420748 TAAATCCGAAA-CTCAAAATCTAAAATCT
1 TAAATCCGAAATC-CAAAAACTAAAATCT
*
50420776 TAAATTCGAAATCCAAAAACTAAAAT
1 TAAATCCGAAATCCAAAAACTAAAAT
50420802 TCGAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.54, C:0.19, G:0.04, T:0.24
Consensus pattern (28 bp):
TAAATCCGAAATCCAAAAACTAAAATCT
Found at i:50420787 original size:21 final size:21
Alignment explanation
Indices: 50420763--50420807 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
50420753 CCGAAACTCA
* * *
50420763 AAATCTAAAATCTTAAATTCG
1 AAATCCAAAAACTAAAATTCG
50420784 AAATCCAAAAACTAAAATTCG
1 AAATCCAAAAACTAAAATTCG
50420805 AAA
1 AAA
50420808 AAATAAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.56, C:0.16, G:0.04, T:0.24
Consensus pattern (21 bp):
AAATCCAAAAACTAAAATTCG
Found at i:50424862 original size:130 final size:130
Alignment explanation
Indices: 50424641--50424925 Score: 448
Period size: 130 Copynumber: 2.2 Consensus size: 130
50424631 ATTCTAATGC
* * *
50424641 TATGTTTAAGAACGTGAACTTGAAA-ATTTGAATTTAGGTTTCAATTACTCTATAAATCGTGAGG
1 TATGATTAAGAACGTGAACTTGAAAGATTTGAATTTAGATTTCAATTACTCTATAAATCGTCAGG
*
50424705 AGAATGAAATTTATACTTAAAATTAGTTGAGTTTCAGTATGATTATATATCTCGAATTCAATTAG
66 AGAATGAAATTTATACTCAAAATTAGTTGAGTTTCAGTATGATTATATATCTCGAATTCAATTAG
* *
50424770 TATGATTAAGAACGTGAATTTGAAAGATTTGAGTTTAGATTTCAATTACTCTATAAATC-TCCAG
1 TATGATTAAGAACGTGAACTTGAAAGATTTGAATTTAGATTTCAATTACTCTATAAATCGT-CAG
* * *
50424834 GAGAATGAAATTTCTACTCGAAATTAGTTGAGTTTCAGTATGATTATATATTTCGAATTCAATTA
65 GAGAATGAAATTTATACTCAAAATTAGTTGAGTTTCAGTATGATTATATATCTCGAATTCAATTA
50424899 G
130 G
* *
50424900 CATGATTAAGAACATGAACTTGAAAG
1 TATGATTAAGAACGTGAACTTGAAAG
50424926 CTAATGTTTA
Statistics
Matches: 142, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
129 24 0.17
130 118 0.83
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (130 bp):
TATGATTAAGAACGTGAACTTGAAAGATTTGAATTTAGATTTCAATTACTCTATAAATCGTCAGG
AGAATGAAATTTATACTCAAAATTAGTTGAGTTTCAGTATGATTATATATCTCGAATTCAATTAG
Found at i:50425202 original size:130 final size:129
Alignment explanation
Indices: 50424928--50425229 Score: 369
Period size: 130 Copynumber: 2.3 Consensus size: 129
50424918 CTTGAAAGCT
* * * * * *
50424928 AATGTTTACTTAAATTA-TTCAAGTTTCTGTTTGATTATATATTTCGAATTTATATAGTATGATT
1 AATGTATACTTAAATTAGTT-GAGTTTCAGTATGATTATATATTCCGAATTCATATAGTATGATT
* **
50424992 AAGAACAGGAACTTGAAAGCTTTGAGTTTAGATTTCAATTACTCTATAAATCGTGAGGGGAGTAA
65 AAGAACAGGAACTTGAAAGCTTTGAGTTTAGATTTCAATTACTCTATAAATCGTGAGGAGAAAAA
*** * *
50425057 AACACATATTTAAATTAGTTGAGTTTCAGCATGATTATATATTCCGAATTCAGT-TAGTATGATT
1 AATGTATACTTAAATTAGTTGAGTTTCAGTATGATTATATATTCCGAATTCA-TATAGTATGATT
* * *
50425121 AAGAACATGAA-TTTAAAGACATTTGAGTTTAGATTTCAATTACTGTATAAATCGTGAGGAGAAA
65 AAGAACAGGAACTTGAAAG-C-TTTGAGTTTAGATTTCAATTACTCTATAAATCGTGAGGAGAAA
50425185 AA
128 AA
*
50425187 AATGTATACTTAAATTAGTTGAGATTT-AGTGTGATTATATATT
1 AATGTATACTTAAATTAGTTGAG-TTTCAGTATGATTATATATT
50425230 TAAAAGATAT
Statistics
Matches: 145, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
128 6 0.04
129 59 0.41
130 77 0.53
131 3 0.02
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (129 bp):
AATGTATACTTAAATTAGTTGAGTTTCAGTATGATTATATATTCCGAATTCATATAGTATGATTA
AGAACAGGAACTTGAAAGCTTTGAGTTTAGATTTCAATTACTCTATAAATCGTGAGGAGAAAAA
Found at i:50425544 original size:35 final size:35
Alignment explanation
Indices: 50425498--50425569 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
50425488 AAAATGGGAA
50425498 GATAGTGATTTTTCACTTCCTCTTGTGAGTGGTTT
1 GATAGTGATTTTTCACTTCCTCTTGTGAGTGGTTT
50425533 GATAGTGATTTTTCACTTCCTCTTGTGAGTGGTTT
1 GATAGTGATTTTTCACTTCCTCTTGTGAGTGGTTT
50425568 GA
1 GA
50425570 CTGTTTTAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.15, C:0.14, G:0.24, T:0.47
Consensus pattern (35 bp):
GATAGTGATTTTTCACTTCCTCTTGTGAGTGGTTT
Found at i:50437268 original size:4 final size:4
Alignment explanation
Indices: 50437259--50437304 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
50437249 CATTCAAGTG
50437259 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CA
50437305 CACACATATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:50450393 original size:163 final size:163
Alignment explanation
Indices: 50450123--50450451 Score: 649
Period size: 163 Copynumber: 2.0 Consensus size: 163
50450113 GCCACAAAGC
*
50450123 CTGTATTAAGGAGGAGAAGAATGTCAGTTAGACCTTCTTATGCAATTCCATGTAATCATAATAAT
1 CTGTATTAAGGAGGAGAAGAATGTCAGTTAGACCTTCTTATACAATTCCATGTAATCATAATAAT
50450188 CATGGTTTCCACAAATGCTATCATAAGGCTGATGGATATCCATAAATCATGTCCTTAATCTAAAG
66 CATGGTTTCCACAAATGCTATCATAAGGCTGATGGATATCCATAAATCATGTCCTTAATCTAAAG
50450253 CAAGCACAGTGCAGTGAACACAAGATCTTTTTT
131 CAAGCACAGTGCAGTGAACACAAGATCTTTTTT
50450286 CTGTATTAAGGAGGAGAAGAATGTCAGTTAGACCTTCTTATACAATTCCATGTAATCATAATAAT
1 CTGTATTAAGGAGGAGAAGAATGTCAGTTAGACCTTCTTATACAATTCCATGTAATCATAATAAT
50450351 CATGGTTTCCACAAATGCTATCATAAGGCTGATGGATATCCATAAATCATGTCCTTAATCTAAAG
66 CATGGTTTCCACAAATGCTATCATAAGGCTGATGGATATCCATAAATCATGTCCTTAATCTAAAG
50450416 CAAGCACAGTGCAGTGAACACAAGATCTTTTTT
131 CAAGCACAGTGCAGTGAACACAAGATCTTTTTT
50450449 CTG
1 CTG
50450452 AATCAATATT
Statistics
Matches: 165, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
163 165 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (163 bp):
CTGTATTAAGGAGGAGAAGAATGTCAGTTAGACCTTCTTATACAATTCCATGTAATCATAATAAT
CATGGTTTCCACAAATGCTATCATAAGGCTGATGGATATCCATAAATCATGTCCTTAATCTAAAG
CAAGCACAGTGCAGTGAACACAAGATCTTTTTT
Found at i:50460100 original size:15 final size:15
Alignment explanation
Indices: 50460069--50460099 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
50460059 CAATATCATA
50460069 TACGAATTTTAATTT
1 TACGAATTTTAATTT
50460084 TACGCAATTTTAATTT
1 TACG-AATTTTAATTT
50460100 AATTTTCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (15 bp):
TACGAATTTTAATTT
Found at i:50462462 original size:16 final size:16
Alignment explanation
Indices: 50462441--50462471 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50462431 TTTTTAAGTT
50462441 ATTTTAAATCAAATAA
1 ATTTTAAATCAAATAA
*
50462457 ATTTTAGATCAAATA
1 ATTTTAAATCAAATA
50462472 TTATCTATCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (16 bp):
ATTTTAAATCAAATAA
Found at i:50467498 original size:31 final size:31
Alignment explanation
Indices: 50467462--50467529 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
50467452 TTAACCCCCC
* * **
50467462 GAACTTGGCAATTGTTCACATATTAGGGCTT
1 GAACTTGACAATTGTTCACACATTAGAACTT
50467493 GAACTTGACAATTGTTCACACATTAGAACTT
1 GAACTTGACAATTGTTCACACATTAGAACTT
50467524 GAACTT
1 GAACTT
50467530 TAGGGTTTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (31 bp):
GAACTTGACAATTGTTCACACATTAGAACTT
Found at i:50470492 original size:14 final size:14
Alignment explanation
Indices: 50470469--50470501 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
50470459 TAAAAAAATT
*
50470469 ATAA-AATATATAA
1 ATAATAATATAAAA
50470482 ATAATAATATAAAA
1 ATAATAATATAAAA
50470496 ATAATA
1 ATAATA
50470502 TTTAATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAATAATATAAAA
Found at i:50470941 original size:188 final size:178
Alignment explanation
Indices: 50470658--50470988 Score: 450
Period size: 188 Copynumber: 1.8 Consensus size: 178
50470648 TATAAGTTAC
* * * * *
50470658 ATTTGAGTTGTCACTTAACACTAAAAATTTAATGGCTAAACTAATGAAAGGACATGATTGATGCG
1 ATTTGAGTTGTCACTTAACACTAAAAAATTAATAGCTAAACTAATGAAAGGACATAATTGATACC
* * *
50470723 TTACTTGTTATACTCCTAGGTATTACTTGCATCACAATGAAAGAGCCTACGTTGTTATTGACATT
66 TTACTTGTTATACTCCTAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTTGTTATTGACATT
50470788 TAGTAGGCAACGCAATGATACCATTGTCGCAAATCTACCATGGACACG
131 TAGTAGGCAACGCAATGATACCATTGTCGCAAATCTACCATGGACACG
50470836 ATTTGAGTTGTCACTTAACACTCAAAAAAATT-ATAGCTAAACTAATGAAAGGACATAATTGATA
1 ATTTGAGTTGTCACTTAACACT--AAAAAATTAATAGCTAAACTAATGAAAGGACATAATTGATA
*
50470900 CAATACTTACGAGACTTGTTATAC-CTTTAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTT
64 C----CTT-----ACTTGTTATACTC-CTAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTT
*
50470964 GTTGTTGACATTTAGTAGGCAACGC
119 GTTATTGACATTTAGTAGGCAACGC
50470989 CACAATGCAA
Statistics
Matches: 131, Mismatches: 10, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
178 22 0.17
179 30 0.23
180 7 0.05
183 2 0.02
187 1 0.01
188 69 0.53
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (178 bp):
ATTTGAGTTGTCACTTAACACTAAAAAATTAATAGCTAAACTAATGAAAGGACATAATTGATACC
TTACTTGTTATACTCCTAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTTGTTATTGACATT
TAGTAGGCAACGCAATGATACCATTGTCGCAAATCTACCATGGACACG
Found at i:50472019 original size:15 final size:15
Alignment explanation
Indices: 50471978--50472025 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
50471968 AAATATATGA
50471978 AAAAAACATAAAA-AT
1 AAAAAAC-TAAAACAT
* *
50471993 AACCAAATTAAAACAT
1 AA-AAAACTAAAACAT
50472009 AAAAAACTAAAACAT
1 AAAAAACTAAAACAT
50472024 AA
1 AA
50472026 TACAAGGACT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
15 20 0.74
16 7 0.26
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (15 bp):
AAAAAACTAAAACAT
Found at i:50472209 original size:3 final size:3
Alignment explanation
Indices: 50472201--50472226 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
50472191 ATTTATCTCT
50472201 ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
50472227 ATATATATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:50499627 original size:17 final size:18
Alignment explanation
Indices: 50499600--50499639 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
50499590 ACAATATCGA
*
50499600 TAAAA-TTAAAA-CATTT
1 TAAAATTTAAAATCAATT
50499616 TAAAATTTAAAATCAATT
1 TAAAATTTAAAATCAATT
50499634 TAAAAT
1 TAAAAT
50499640 ATCAATCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 5 0.24
17 6 0.29
18 10 0.48
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAATTTAAAATCAATT
Found at i:50504285 original size:2 final size:2
Alignment explanation
Indices: 50504278--50504303 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
50504268 AAGAAGCCTT
50504278 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
50504304 ACAACAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:50508707 original size:6 final size:6
Alignment explanation
Indices: 50508696--50508822 Score: 69
Period size: 6 Copynumber: 19.0 Consensus size: 6
50508686 TATTGTTGAT
*
50508696 AATGGG AATGGG AATGGG AAATGGG AATGGG AATGGG AGGA-GGG AACGGTGGA
1 AATGGG AATGGG AATGGG -AATGGG AATGGG AATGGG A--ATGGG AA---TGGG
* **
50508749 AGAGGGG AGATGGG AATGGG AAATGGG AGGA-GGG CACGGTGG AATGGG
1 A-ATGGG A-ATGGG AATGGG -AATGGG A--ATGGG -AATG-GG AATGGG
50508797 AAATGGG AATGGG AAATGGG AATGGG
1 -AATGGG AATGGG -AATGGG AATGGG
50508823 TATTGCATGG
Statistics
Matches: 98, Mismatches: 7, Indels: 32
0.72 0.05 0.23
Matches are distributed among these distances:
5 1 0.01
6 45 0.46
7 43 0.44
8 5 0.05
9 3 0.03
10 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.52, T:0.13
Consensus pattern (6 bp):
AATGGG
Found at i:50508720 original size:13 final size:13
Alignment explanation
Indices: 50508696--50508822 Score: 91
Period size: 13 Copynumber: 9.5 Consensus size: 13
50508686 TATTGTTGAT
50508696 AATGGG-AATGGG
1 AATGGGAAATGGG
50508708 AATGGGAAATGGG
1 AATGGGAAATGGG
50508721 AATGGG-AATGGG
1 AATGGGAAATGGG
* *
50508733 AGGA-GGGAACGGTGGA
1 A--ATGGGAA--ATGGG
* *
50508749 AGAGGGGAGATGGG
1 A-ATGGGAAATGGG
50508763 AATGGGAAATGGG
1 AATGGGAAATGGG
* **
50508776 AGGA-GGGCACGGTGG
1 A--ATGGGAAATG-GG
50508791 AATGGGAAATGGG
1 AATGGGAAATGGG
50508804 AATGGGAAATGGG
1 AATGGGAAATGGG
50508817 AATGGG
1 AATGGG
50508823 TATTGCATGG
Statistics
Matches: 91, Mismatches: 13, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
12 13 0.14
13 48 0.53
14 16 0.18
15 6 0.07
16 8 0.09
ACGTcount: A:0.33, C:0.02, G:0.52, T:0.13
Consensus pattern (13 bp):
AATGGGAAATGGG
Found at i:50508795 original size:21 final size:21
Alignment explanation
Indices: 50508725--50508797 Score: 69
Period size: 21 Copynumber: 3.4 Consensus size: 21
50508715 AATGGGAATG
50508725 GGAATGGGAGGAGGGAACGGT
1 GGAATGGGAGGAGGGAACGGT
* *
50508746 GGAA-GAGGGGAGATGGGAATGG-
1 GGAATG-GGAG-GA-GGGAACGGT
* *
50508768 GAAATGGGAGGAGGGCACGGT
1 GGAATGGGAGGAGGGAACGGT
50508789 GGAATGGGA
1 GGAATGGGA
50508798 AATGGGAATG
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
20 7 0.17
21 17 0.43
22 8 0.20
23 8 0.20
ACGTcount: A:0.30, C:0.04, G:0.56, T:0.10
Consensus pattern (21 bp):
GGAATGGGAGGAGGGAACGGT
Found at i:50508958 original size:30 final size:30
Alignment explanation
Indices: 50508910--50509274 Score: 465
Period size: 30 Copynumber: 12.1 Consensus size: 30
50508900 TGTATTTAAA
* *
50508910 ATTTTAAAAATAAAAAAAATATATGTAATGG
1 ATTTTAAAAAT-AAAAAAATATATGTAGTGT
50508941 ATTTTAAAAATAAAAAAATACT-TGTAGTGT
1 ATTTTAAAAATAAAAAAATA-TATGTAGTGT
* *
50508971 ATTTT-AAAAT--ATATATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
50508998 ATTTTAAAAAT-AAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
* * *
50509027 ATTCTAGAAATAAAAATATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
* * *
50509057 ATTTTAATATATATATATATATATATATGAAGTGT
1 ATTTTAA-A-A-ATA-A-AAAAATATATGTAGTGT
* *
50509092 ATTTTAAAAGTAAAAAAAATATATATAGTGT
1 ATTTTAAAAAT-AAAAAAATATATGTAGTGT
*
50509123 ATTTTAAAAATAAAAAAAATATATGTAGTAT
1 ATTTTAAAAAT-AAAAAAATATATGTAGTGT
50509154 ATTTTAAAAAT-AAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
50509183 ATTTTAAAAATAAAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
50509213 ATTTTAAAAATAAAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
* *
50509243 ATTGTAAAAAT-AAAAAATATATGTAGTAT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
50509272 ATT
1 ATT
50509275 CGGCGTATTC
Statistics
Matches: 298, Mismatches: 24, Indels: 26
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.00
27 18 0.06
28 5 0.02
29 77 0.26
30 100 0.34
31 65 0.22
32 3 0.01
33 5 0.02
34 2 0.01
35 22 0.07
ACGTcount: A:0.51, C:0.01, G:0.10, T:0.38
Consensus pattern (30 bp):
ATTTTAAAAATAAAAAAATATATGTAGTGT
Found at i:50509697 original size:21 final size:22
Alignment explanation
Indices: 50509645--50509697 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
50509635 ACCATTGTTT
*
50509645 CTAATCTCA-CAGCTACAGTAT
1 CTAATCTCACCAGCTACAGTAA
*
50509666 CCAATCTCACCA-CTACAGTAA
1 CTAATCTCACCAGCTACAGTAA
50509687 CTAATCTCACC
1 CTAATCTCACC
50509698 GCCACCGATG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.34, C:0.36, G:0.06, T:0.25
Consensus pattern (22 bp):
CTAATCTCACCAGCTACAGTAA
Found at i:50513010 original size:20 final size:20
Alignment explanation
Indices: 50512985--50513024 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
50512975 AATATTTTCC
*
50512985 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
50513005 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
50513025 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:50513030 original size:34 final size:35
Alignment explanation
Indices: 50512973--50513039 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
50512963 CAAACACCAA
*
50512973 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
50513008 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
50513040 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:50513866 original size:2 final size:2
Alignment explanation
Indices: 50513861--50513891 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
50513851 GCATGTGTGC
*
50513861 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50513892 AGATTTAGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50518152 original size:9 final size:9
Alignment explanation
Indices: 50518138--50518163 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
50518128 CAAATAAAGG
50518138 GGTTGAATC
1 GGTTGAATC
50518147 GGTTGAATC
1 GGTTGAATC
50518156 GGTTGAAT
1 GGTTGAAT
50518164 TAGAAACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.08, G:0.35, T:0.35
Consensus pattern (9 bp):
GGTTGAATC
Found at i:50521699 original size:79 final size:79
Alignment explanation
Indices: 50521568--50521727 Score: 293
Period size: 79 Copynumber: 2.0 Consensus size: 79
50521558 TCAAGCACTC
50521568 AACAAGGCACTCTTGCTCTATAAAGTTACAACCTTTCTAATTCGTGCTTTCTCAAGCACTCAAAT
1 AACAAGGCACTCTTGCTCTATAAAGTTACAACCTTTCTAATTCGTGCTTTCTCAAGCACTCAAAT
50521633 TCTCTGTAAAATTA
66 TCTCTGTAAAATTA
* * *
50521647 AACAAGGCGCTCTTGCTCTGTGAAGTTACAACCTTTCTAATTCGTGCTTTCTCAAGCACTCAAAT
1 AACAAGGCACTCTTGCTCTATAAAGTTACAACCTTTCTAATTCGTGCTTTCTCAAGCACTCAAAT
50521712 TCTCTGTAAAATTA
66 TCTCTGTAAAATTA
50521726 AA
1 AA
50521728 AGATGAAACA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.34
Consensus pattern (79 bp):
AACAAGGCACTCTTGCTCTATAAAGTTACAACCTTTCTAATTCGTGCTTTCTCAAGCACTCAAAT
TCTCTGTAAAATTA
Found at i:50523732 original size:26 final size:26
Alignment explanation
Indices: 50523703--50523754 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
50523693 TACGTAATGT
50523703 ATGCTCAGATTAGACACAGGGTTGAC
1 ATGCTCAGATTAGACACAGGGTTGAC
50523729 ATGCTCAGATTAGACACAGGGTTGAC
1 ATGCTCAGATTAGACACAGGGTTGAC
50523755 TATAACCAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (26 bp):
ATGCTCAGATTAGACACAGGGTTGAC
Found at i:50527207 original size:77 final size:77
Alignment explanation
Indices: 50527089--50527243 Score: 310
Period size: 77 Copynumber: 2.0 Consensus size: 77
50527079 TTAATAGTCA
50527089 ATTAACTTGTTGTTTTTCTTTTTTGGTCACCTAACTATGAAAAGTTATAAATTGGTCACTTAATT
1 ATTAACTTGTTGTTTTTCTTTTTTGGTCACCTAACTATGAAAAGTTATAAATTGGTCACTTAATT
50527154 TTGTTAATTTTT
66 TTGTTAATTTTT
50527166 ATTAACTTGTTGTTTTTCTTTTTTGGTCACCTAACTATGAAAAGTTATAAATTGGTCACTTAATT
1 ATTAACTTGTTGTTTTTCTTTTTTGGTCACCTAACTATGAAAAGTTATAAATTGGTCACTTAATT
50527231 TTGTTAATTTTT
66 TTGTTAATTTTT
50527243 A
1 A
50527244 CTTTTTTGGT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.26, C:0.10, G:0.12, T:0.52
Consensus pattern (77 bp):
ATTAACTTGTTGTTTTTCTTTTTTGGTCACCTAACTATGAAAAGTTATAAATTGGTCACTTAATT
TTGTTAATTTTT
Found at i:50527272 original size:31 final size:31
Alignment explanation
Indices: 50527234--50527297 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
50527224 CTTAATTTTG
*
50527234 TTAATTTT-TACTTTTTTGGTCACCCAACTAT
1 TTAATTTTAT-CTTTTTTAGTCACCCAACTAT
50527265 TTAATTTTATCTTTTTTAGTCACCCAACTAT
1 TTAATTTTATCTTTTTTAGTCACCCAACTAT
50527296 TT
1 TT
50527298 TGCATTTTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.23, C:0.19, G:0.05, T:0.53
Consensus pattern (31 bp):
TTAATTTTATCTTTTTTAGTCACCCAACTAT
Found at i:50530106 original size:29 final size:28
Alignment explanation
Indices: 50530039--50530113 Score: 73
Period size: 32 Copynumber: 2.5 Consensus size: 28
50530029 ATTTACTCCT
*
50530039 ATATTTT-ATAAAATTATTATCCAAATA
1 ATATTTTAATAAAATTATTATCAAAATA
50530066 ATATCATATTAATTAAAATTATTGAT-AAAATA
1 ATAT--T-TTAA-TAAAATTATT-ATCAAAATA
50530098 ATATTTTAAATAAAAT
1 ATATTTT-AATAAAAT
50530114 ATATACTTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
27 4 0.10
29 9 0.22
30 5 0.12
31 1 0.03
32 19 0.47
33 2 0.05
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (28 bp):
ATATTTTAATAAAATTATTATCAAAATA
Found at i:50544327 original size:2 final size:2
Alignment explanation
Indices: 50544320--50544354 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
50544310 ATGAAGAATA
50544320 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50544355 ACTGTATGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:50545457 original size:4 final size:4
Alignment explanation
Indices: 50545448--50545483 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
50545438 ACCTCCACTG
50545448 CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA
50545484 TTCCATTCGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:50559445 original size:29 final size:28
Alignment explanation
Indices: 50559387--50559455 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 28
50559377 TTCAATCTTG
* *
50559387 TTAAGAAAAAA-ATTAAAATTAAAATAA
1 TTAAGAAAAAATAATAAAATCAAAATAA
50559414 TTAAGAAAAAATAATAAAA-CACAAATAAA
1 TTAAGAAAAAATAATAAAATCA-AAAT-AA
*
50559443 TTAATAAGAAAAT
1 TTAAGAA-AAAAT
50559456 TTGTCTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 12 0.34
28 10 0.29
29 8 0.23
30 5 0.14
ACGTcount: A:0.70, C:0.03, G:0.04, T:0.23
Consensus pattern (28 bp):
TTAAGAAAAAATAATAAAATCAAAATAA
Found at i:50565586 original size:12 final size:12
Alignment explanation
Indices: 50565569--50565604 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
50565559 AAATCCTCTG
*
50565569 CATGCATGCATA
1 CATGCATACATA
50565581 CATGCATACATA
1 CATGCATACATA
*
50565593 CATACATACATA
1 CATGCATACATA
50565605 TGTATAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.42, C:0.25, G:0.08, T:0.25
Consensus pattern (12 bp):
CATGCATACATA
Found at i:50569132 original size:20 final size:20
Alignment explanation
Indices: 50569109--50569147 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
50569099 CATTTTTATT
50569109 TAAA-ATTTATGATTTAAAAA
1 TAAATATTT-TGATTTAAAAA
*
50569129 TAAATATTTTTATTTAAAA
1 TAAATATTTTGATTTAAAA
50569148 TAATAAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (20 bp):
TAAATATTTTGATTTAAAAA
Found at i:50569605 original size:12 final size:13
Alignment explanation
Indices: 50569588--50569616 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
50569578 ATTGACATTC
50569588 TTTTTTTCT-TTT
1 TTTTTTTCTCTTT
50569600 TTTTTTTCTCTTT
1 TTTTTTTCTCTTT
50569613 TTTT
1 TTTT
50569617 CATGATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTTCTCTTT
Found at i:50571126 original size:22 final size:22
Alignment explanation
Indices: 50571096--50571167 Score: 67
Period size: 22 Copynumber: 3.1 Consensus size: 22
50571086 ATTTTTAAAA
50571096 TTTAGAAAAATAAAAATATGTAT
1 TTTA-AAAAATAAAAATATGTAT
* *
50571119 TTTAAAAATTAAAAATATTTAT
1 TTTAAAAAATAAAAATATGTAT
50571141 AATTCT-AAAAATAATAAA-ATGTAT
1 --TT-TAAAAAATAA-AAATATGTAT
50571165 TTT
1 TTT
50571168 TTAAGTTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
21 1 0.02
22 18 0.44
23 4 0.10
24 14 0.34
25 4 0.10
ACGTcount: A:0.54, C:0.01, G:0.04, T:0.40
Consensus pattern (22 bp):
TTTAAAAAATAAAAATATGTAT
Found at i:50573664 original size:2 final size:2
Alignment explanation
Indices: 50573657--50573693 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
50573647 AAAAGAATGT
50573657 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
50573694 TACTACTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:50581172 original size:150 final size:150
Alignment explanation
Indices: 50580901--50581198 Score: 596
Period size: 150 Copynumber: 2.0 Consensus size: 150
50580891 AACATTGTTG
50580901 ATGTTGAGATCAGACAAACCAGAGATGGTAGTAGCATTGGACGGTTCACCTTGATTAGTGTAAGG
1 ATGTTGAGATCAGACAAACCAGAGATGGTAGTAGCATTGGACGGTTCACCTTGATTAGTGTAAGG
50580966 TGGAGAGCCACGGTAGAGGGTGCTTGGATTATGGTAGTGTTAAATCGGGTATTAAGGAGAAGTGT
66 TGGAGAGCCACGGTAGAGGGTGCTTGGATTATGGTAGTGTTAAATCGGGTATTAAGGAGAAGTGT
50581031 AGGAGAGAGGGAGAGAAACA
131 AGGAGAGAGGGAGAGAAACA
50581051 ATGTTGAGATCAGACAAACCAGAGATGGTAGTAGCATTGGACGGTTCACCTTGATTAGTGTAAGG
1 ATGTTGAGATCAGACAAACCAGAGATGGTAGTAGCATTGGACGGTTCACCTTGATTAGTGTAAGG
50581116 TGGAGAGCCACGGTAGAGGGTGCTTGGATTATGGTAGTGTTAAATCGGGTATTAAGGAGAAGTGT
66 TGGAGAGCCACGGTAGAGGGTGCTTGGATTATGGTAGTGTTAAATCGGGTATTAAGGAGAAGTGT
50581181 AGGAGAGAGGGAGAGAAA
131 AGGAGAGAGGGAGAGAAA
50581199 GAGAAAAAAG
Statistics
Matches: 148, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 148 1.00
ACGTcount: A:0.31, C:0.10, G:0.36, T:0.23
Consensus pattern (150 bp):
ATGTTGAGATCAGACAAACCAGAGATGGTAGTAGCATTGGACGGTTCACCTTGATTAGTGTAAGG
TGGAGAGCCACGGTAGAGGGTGCTTGGATTATGGTAGTGTTAAATCGGGTATTAAGGAGAAGTGT
AGGAGAGAGGGAGAGAAACA
Found at i:50597519 original size:11 final size:11
Alignment explanation
Indices: 50597505--50597545 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
50597495 TGTTTTCTCC
50597505 CTATTTTGCTA
1 CTATTTTGCTA
*
50597516 CTATTTTACTA
1 CTATTTTGCTA
* *
50597527 TTATGTTGCTA
1 CTATTTTGCTA
50597538 CTATTTTG
1 CTATTTTG
50597546 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:50597616 original size:30 final size:30
Alignment explanation
Indices: 50597582--50597644 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
50597572 AATTATTTTA
50597582 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
50597612 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
50597642 TTG
1 TTG
50597645 CTTATTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:50597795 original size:12 final size:11
Alignment explanation
Indices: 50597767--50597800 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
50597757 ATATATATTT
50597767 TAAAATT-ATA
1 TAAAATTAATA
50597777 TAAAATTAATA
1 TAAAATTAATA
50597788 TAAAAATTAATA
1 T-AAAATTAATA
50597800 T
1 T
50597801 GAGTGGGCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 7 0.32
11 4 0.18
12 11 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TAAAATTAATA
Done.