Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 167 of 168
Found at i:50598124 original size:15 final size:16
Alignment explanation
Indices: 50598090--50598132 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
50598080 TTTATTCTTG
*
50598090 AATATTTATAAATTAT
1 AATATTTATAAATTAA
*
50598106 AATATTTAT-TATTAA
1 AATATTTATAAATTAA
*
50598121 AATATTAATAAA
1 AATATTTATAAA
50598133 AAAAGTATCC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AATATTTATAAATTAA
Found at i:50600570 original size:48 final size:48
Alignment explanation
Indices: 50600514--50600606 Score: 159
Period size: 48 Copynumber: 1.9 Consensus size: 48
50600504 AATTATTTTT
* * *
50600514 ATTTTAGTCCCCCAACTTTAATAAGCTTTCATTTTGGTCACTCGTTTC
1 ATTTTAGTCACCCAACTTTAATAAGCTTTCATTTTGATCAATCGTTTC
50600562 ATTTTAGTCACCCAACTTTAATAAGCTTTCATTTTGATCAATCGT
1 ATTTTAGTCACCCAACTTTAATAAGCTTTCATTTTGATCAATCGT
50600607 CTTTAATTCA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.43
Consensus pattern (48 bp):
ATTTTAGTCACCCAACTTTAATAAGCTTTCATTTTGATCAATCGTTTC
Found at i:50603159 original size:15 final size:12
Alignment explanation
Indices: 50603118--50603151 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
50603108 AATTCGTAGT
50603118 GATCTTCTTCAC
1 GATCTTCTTCAC
50603130 GATCTTCTTCAC
1 GATCTTCTTCAC
50603142 GATCTTCTTC
1 GATCTTCTTC
50603152 GACTCGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.15, C:0.32, G:0.09, T:0.44
Consensus pattern (12 bp):
GATCTTCTTCAC
Found at i:50616744 original size:22 final size:22
Alignment explanation
Indices: 50616702--50616745 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
50616692 TTTATCTCTA
*
50616702 AAAAAAAATTACAAAACAATTT
1 AAAAAAAATTACAAAAAAATTT
*
50616724 AAAATAAATT-CAAAAGAAATTT
1 AAAAAAAATTACAAAA-AAATTT
50616746 GAATATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.66, C:0.07, G:0.02, T:0.25
Consensus pattern (22 bp):
AAAAAAAATTACAAAAAAATTT
Found at i:50617289 original size:19 final size:18
Alignment explanation
Indices: 50617247--50617289 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
50617237 CTTGAAAATA
*
50617247 TTAAAATTTAAATTTCTT
1 TTAAAAATTAAATTTCTT
* *
50617265 TTAAAAATTAATTTTTTT
1 TTAAAAATTAAATTTCTT
*
50617283 TTCAAAA
1 TTAAAAA
50617290 CCCAATATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (18 bp):
TTAAAAATTAAATTTCTT
Found at i:50621705 original size:30 final size:30
Alignment explanation
Indices: 50621647--50621728 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
50621637 TCTAAGATTT
* * *
50621647 TTTTGAAATTTTTATTTAGAACCCTTCAAAAA
1 TTTTGAAAATTTTAATTA-AA-TCTTCAAAAA
* *
50621679 TTTT-AAAATTTCTCATTAAATCTTCAAAAG
1 TTTTGAAAATTT-TAATTAAATCTTCAAAAA
50621709 TTTTGAAAATTTTAATTAAA
1 TTTTGAAAATTTTAATTAAA
50621729 CCTCTTAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
30 19 0.45
31 15 0.36
32 8 0.19
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (30 bp):
TTTTGAAAATTTTAATTAAATCTTCAAAAA
Found at i:50636862 original size:17 final size:18
Alignment explanation
Indices: 50636840--50636877 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
50636830 TAACTTAAAA
50636840 AAATAAAGACAAA-ATTG
1 AAATAAAGACAAATATTG
* *
50636857 AAATAAATATAAATATTG
1 AAATAAAGACAAATATTG
50636875 AAA
1 AAA
50636878 GTTCTTAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (18 bp):
AAATAAAGACAAATATTG
Found at i:50639777 original size:15 final size:15
Alignment explanation
Indices: 50639725--50639777 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
50639715 AACATATAGA
* * *
50639725 AAAAATATAATCTAG
1 AAAAATAAAATTTAC
*
50639740 AAAAATATAAA-TTAT
1 AAAAATA-AAATTTAC
50639755 AAAAATAAAATTTAC
1 AAAAATAAAATTTAC
50639770 AAAAATAA
1 AAAAATAA
50639778 GATAATTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
14 3 0.09
15 27 0.84
16 2 0.06
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (15 bp):
AAAAATAAAATTTAC
Found at i:50639991 original size:25 final size:24
Alignment explanation
Indices: 50639952--50640031 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 24
50639942 TAATTTGACT
* *
50639952 TTTTAAAATTGATAATTATATATA
1 TTTTAAATTTTATAATTATATATA
** * *
50639976 TTTTAGAATTTTATAAAAAAATATTT
1 TTTTA-AATTTTATAATTATATA-TA
*
50640002 TTTTAATTTTTATATATTATATATAA
1 TTTTAAATTTTATA-ATTATATAT-A
50640028 TTTT
1 TTTT
50640032 TTACATTTTT
Statistics
Matches: 41, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
24 5 0.12
25 21 0.51
26 15 0.37
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (24 bp):
TTTTAAATTTTATAATTATATATA
Found at i:50640245 original size:20 final size:20
Alignment explanation
Indices: 50640202--50640264 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
50640192 GTTTTATAAT
*
50640202 ATTTAA-ATATTTAATATTATA
1 ATTTAATATTTTTAAT-TTA-A
**
50640223 ATTTTTTATTTTTAATTTAA
1 ATTTAATATTTTTAATTTAA
50640243 ATTTAATATTTTTAATTTAA
1 ATTTAATATTTTTAATTTAA
50640263 AT
1 AT
50640265 AAATTTAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 21 0.58
21 7 0.19
22 8 0.22
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTAATATTTTTAATTTAA
Found at i:50640532 original size:39 final size:39
Alignment explanation
Indices: 50640488--50640568 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
50640478 AAATAAACTT
*
50640488 AAAATAAGATAATAATAAAAAGCTTGAACGAACTATTAA
1 AAAATAAGATAATAATAAAAAGCTTGAACGAACTAATAA
*
50640527 AAAATAAGATAATAATAAAAAGCTTGAATGAACTAATAA
1 AAAATAAGATAATAATAAAAAGCTTGAACGAACTAATAA
50640566 AAA
1 AAA
50640569 CTGATTTCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.62, C:0.06, G:0.10, T:0.22
Consensus pattern (39 bp):
AAAATAAGATAATAATAAAAAGCTTGAACGAACTAATAA
Found at i:50640565 original size:21 final size:20
Alignment explanation
Indices: 50640500--50640568 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 20
50640490 AATAAGATAA
50640500 TAATAAAAAGCTTGAACGAAC
1 TAATAAAAAGCTTGAA-GAAC
* * *
50640521 TATTAAAAA--AT-AAGATAA
1 TAATAAAAAGCTTGAAGA-AC
50640539 TAATAAAAAGCTTGAATGAAC
1 TAATAAAAAGCTTGAA-GAAC
50640560 TAATAAAAA
1 TAATAAAAA
50640569 CTGATTTCCT
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
17 2 0.05
18 11 0.30
19 1 0.03
20 1 0.03
21 20 0.54
22 2 0.05
ACGTcount: A:0.59, C:0.07, G:0.10, T:0.23
Consensus pattern (20 bp):
TAATAAAAAGCTTGAAGAAC
Found at i:50643122 original size:58 final size:58
Alignment explanation
Indices: 50643021--50643143 Score: 167
Period size: 58 Copynumber: 2.1 Consensus size: 58
50643011 TTTAATTCAT
* *
50643021 ATAATAATTATATTAAGAATTTTATTAAATCATATATTATTTTATTAAATTATATTTA
1 ATAATAATTATATTAAGAATATGATTAAATCATATATTATTTTATTAAATTATATTTA
* * * * *
50643079 ATAATAATTATGTTAA-AATATGGTTAAATTATTTATTAGTTTTATTAAATTATTTTTA
1 ATAATAATTATATTAAGAATATGATTAAATCATATATTA-TTTTATTAAATTATATTTA
50643137 ATAATAA
1 ATAATAA
50643144 GCTTATTAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 17 0.30
58 40 0.70
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (58 bp):
ATAATAATTATATTAAGAATATGATTAAATCATATATTATTTTATTAAATTATATTTA
Found at i:50643310 original size:44 final size:46
Alignment explanation
Indices: 50643247--50643341 Score: 124
Period size: 44 Copynumber: 2.1 Consensus size: 46
50643237 TATTACAACA
* *
50643247 CCATTCCATTCAACCAAACACA-AGAA-TACT-ATTACAGTTTTATT
1 CCATTCCATTCAACCAAACA-ATAGAATTACTGATCACAGCTTTATT
* *
50643291 CCATTCCATTTAACCAAACAATTGAATTACTGATCACAGCTTTATT
1 CCATTCCATTCAACCAAACAATAGAATTACTGATCACAGCTTTATT
50643337 CCATT
1 CCATT
50643342 ACAACTATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.50
45 4 0.09
46 17 0.39
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (46 bp):
CCATTCCATTCAACCAAACAATAGAATTACTGATCACAGCTTTATT
Found at i:50643378 original size:16 final size:16
Alignment explanation
Indices: 50643326--50643377 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
50643316 ATTACTGATC
50643326 ACAGCTTTATTCCATT
1 ACAGCTTTATTCCATT
* * *
50643342 ACAACTATATTCAATT
1 ACAGCTTTATTCCATT
*
50643358 ACAGTTTTATTCCATT
1 ACAGCTTTATTCCATT
50643374 ACAG
1 ACAG
50643378 TGAACCAAAC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (16 bp):
ACAGCTTTATTCCATT
Found at i:50649766 original size:24 final size:25
Alignment explanation
Indices: 50649709--50649770 Score: 78
Period size: 23 Copynumber: 2.6 Consensus size: 25
50649699 TGCTTATACC
50649709 CTTTCTACTTTTC-GAAAATTACAT
1 CTTTCTACTTTTCAGAAAATTACAT
*
50649733 C-TTCTA-TTTTCAGGAAATTA-AT
1 CTTTCTACTTTTCAGAAAATTACAT
*
50649755 CTTTTTACTTTTCAGA
1 CTTTCTACTTTTCAGA
50649771 TTTCAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
22 8 0.25
23 16 0.50
24 8 0.25
ACGTcount: A:0.27, C:0.18, G:0.06, T:0.48
Consensus pattern (25 bp):
CTTTCTACTTTTCAGAAAATTACAT
Found at i:50656073 original size:63 final size:61
Alignment explanation
Indices: 50655965--50656131 Score: 222
Period size: 54 Copynumber: 2.8 Consensus size: 61
50655955 TTTTTGATGT
* *
50655965 CAATGCCAACATGAGAAGGCATTAGCACAAGGAAGTACAAGGTCCATTAGGTCCATTGTGTGC
1 CAATGCCAACATGAGAAGGCATTAGCACAAGGAAGAATAAGGTCCATT--GTCCATTGTGTGC
*
50656028 CAATGCCAACATGAGAAGGAATTAGCACAAGGAAGAAT-A-----A-TGTCCATTGTGTGC
1 CAATGCCAACATGAGAAGGCATTAGCACAAGGAAGAATAAGGTCCATTGTCCATTGTGTGC
* *
50656082 CAATGCCAACATCAAAAGGCATTAGCACAAGGAAGAATAAGGTCCATTGT
1 CAATGCCAACATGAGAAGGCATTAGCACAAGGAAGAATAAGGTCCATTGT
50656132 GTGTTTTTTC
Statistics
Matches: 91, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
54 48 0.53
55 1 0.01
56 1 0.01
57 1 0.01
60 1 0.01
61 3 0.03
62 1 0.01
63 35 0.38
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (61 bp):
CAATGCCAACATGAGAAGGCATTAGCACAAGGAAGAATAAGGTCCATTGTCCATTGTGTGC
Found at i:50661960 original size:69 final size:69
Alignment explanation
Indices: 50661837--50661967 Score: 183
Period size: 69 Copynumber: 1.9 Consensus size: 69
50661827 AGTAGTGTTC
* *
50661837 GCTTCAAGTAGCTTGAAAAGATTAGAAGAATCAAGAGACTCTTATCAATTTGATGGTAGCACGGG
1 GCTTCAAGTAGCTTGAAAAGATTAGAAGAATCAAGAGACTCATATCAATCTGATGGTAGCACGGG
50661902 ACTA
66 ACTA
* * * * *
50661906 GCTTCAGGTAGCTT-AAGGAGATTAGCAGAATCAAGGGACTCATATGAATCTGATGGTAGCAC
1 GCTTCAAGTAGCTTGAA-AAGATTAGAAGAATCAAGAGACTCATATCAATCTGATGGTAGCAC
50661968 TGGATCCTTT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
68 2 0.04
69 52 0.96
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.25
Consensus pattern (69 bp):
GCTTCAAGTAGCTTGAAAAGATTAGAAGAATCAAGAGACTCATATCAATCTGATGGTAGCACGGG
ACTA
Found at i:50670273 original size:21 final size:23
Alignment explanation
Indices: 50670248--50670304 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 23
50670238 CTTAAAATTT
50670248 ATAAAATTTTATATT-AA-TATA
1 ATAAAATTTTATATTGAACTATA
* *
50670269 ATAAAATTATATTTTGAACTATA
1 ATAAAATTTTATATTGAACTATA
* *
50670292 TTAAAAATTTATA
1 ATAAAATTTTATA
50670305 ATTCAAACTC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
21 13 0.46
22 2 0.07
23 13 0.46
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (23 bp):
ATAAAATTTTATATTGAACTATA
Found at i:50674846 original size:7 final size:7
Alignment explanation
Indices: 50674799--50674847 Score: 55
Period size: 7 Copynumber: 7.1 Consensus size: 7
50674789 AAATCATAAC
50674799 ATAAGAA
1 ATAAGAA
*
50674806 ATGAGAA
1 ATAAGAA
*
50674813 ATAATAA
1 ATAAGAA
*
50674820 ATAATAA
1 ATAAGAA
*
50674827 ATAATAA
1 ATAAGAA
50674834 AT-AGAA
1 ATAAGAA
50674840 ATAAGAA
1 ATAAGAA
50674847 A
1 A
50674848 GATATATTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
6 5 0.14
7 32 0.86
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.20
Consensus pattern (7 bp):
ATAAGAA
Found at i:50674891 original size:28 final size:28
Alignment explanation
Indices: 50674859--50674913 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
50674849 ATATATTATA
50674859 TTAGGATTT-AAATAGGAGTAATTTGAAG
1 TTAGGATTTCAAA-AGGAGTAATTTGAAG
*
50674887 TTAGGATTTCAAAAGGATTAATTTGAA
1 TTAGGATTTCAAAAGGAGTAATTTGAA
50674914 TTTCGAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 22 0.88
29 3 0.12
ACGTcount: A:0.40, C:0.02, G:0.22, T:0.36
Consensus pattern (28 bp):
TTAGGATTTCAAAAGGAGTAATTTGAAG
Found at i:50675370 original size:23 final size:23
Alignment explanation
Indices: 50675342--50675398 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
50675332 TTAGAAAATA
50675342 TATAATTTGATAAGATTTGATTT
1 TATAATTTGATAAGATTTGATTT
* * *
50675365 TGTAATTTGATACGGTTTGATTT
1 TATAATTTGATAAGATTTGATTT
50675388 TATAATTTGAT
1 TATAATTTGAT
50675399 TTTGTATACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.30, C:0.02, G:0.16, T:0.53
Consensus pattern (23 bp):
TATAATTTGATAAGATTTGATTT
Found at i:50676016 original size:21 final size:21
Alignment explanation
Indices: 50675992--50676040 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
50675982 TTTAGGCTAC
50675992 ATGATGGGATTTCTTCATGGA
1 ATGATGGGATTTCTTCATGGA
50676013 ATGATGGGATTTCTTCATGGA
1 ATGATGGGATTTCTTCATGGA
*
50676034 TTGATGG
1 ATGATGG
50676041 AGATCATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.22, C:0.08, G:0.31, T:0.39
Consensus pattern (21 bp):
ATGATGGGATTTCTTCATGGA
Found at i:50676146 original size:12 final size:12
Alignment explanation
Indices: 50676129--50676153 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50676119 TAATCTTGGG
50676129 GATGTTCCACCT
1 GATGTTCCACCT
50676141 GATGTTCCACCT
1 GATGTTCCACCT
50676153 G
1 G
50676154 TTTTATTCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.20, T:0.32
Consensus pattern (12 bp):
GATGTTCCACCT
Found at i:50678513 original size:25 final size:26
Alignment explanation
Indices: 50678483--50678531 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
50678473 TATATTAAAA
50678483 TATTTT-TTGTTTAAT-AAAATATTAT
1 TATTTTATT-TTTAATAAAAATATTAT
*
50678508 TATTTTATTTTTATTAAAAATATT
1 TATTTTATTTTTAATAAAAATATT
50678532 TAAATTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (26 bp):
TATTTTATTTTTAATAAAAATATTAT
Found at i:50682507 original size:28 final size:28
Alignment explanation
Indices: 50682475--50682529 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
50682465 ATAAATTCTA
50682475 TTAGGA-TTTAAATAGGAGTAATTTGAAG
1 TTAGGATTTTAAA-AGGAGTAATTTGAAG
*
50682503 TTAGGATTTTAAAAGGATTAATTTGAA
1 TTAGGATTTTAAAAGGAGTAATTTGAA
50682530 TTTCAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 19 0.76
29 6 0.24
ACGTcount: A:0.40, C:0.00, G:0.22, T:0.38
Consensus pattern (28 bp):
TTAGGATTTTAAAAGGAGTAATTTGAAG
Found at i:50682978 original size:23 final size:23
Alignment explanation
Indices: 50682950--50683005 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
50682940 TTAGAAGATA
50682950 TATAATTTGATAAGATTTGATTT
1 TATAATTTGATAAGATTTGATTT
* *
50682973 TGTAATTTGATACGATTTGATTT
1 TATAATTTGATAAGATTTGATTT
50682996 TATAATTTGA
1 TATAATTTGA
50683006 CTGTCGAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.32, C:0.02, G:0.14, T:0.52
Consensus pattern (23 bp):
TATAATTTGATAAGATTTGATTT
Found at i:50687739 original size:46 final size:46
Alignment explanation
Indices: 50687602--50687740 Score: 206
Period size: 46 Copynumber: 3.0 Consensus size: 46
50687592 TGGCAAATCG
* *
50687602 TGAAAAGTAGGTATGGTGTTTCATTGAAGAAAACCATACTGAGTTG
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
* * *
50687648 TGAAAAGTAGGTATAGTGTTTCGGTAAAGAAAACCATACTGAGTTA
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
* * *
50687694 TGAAAAGTAGGTATGGTATTTCAGTGAAGGAAACTATACTGAGTTA
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
50687740 T
1 T
50687741 AGCATTGTAA
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (46 bp):
TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
Found at i:50694972 original size:54 final size:54
Alignment explanation
Indices: 50694898--50695006 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
50694888 CAAAATATAT
*
50694898 AATATTTATTATTCTGTATAAAAGAGTT-TTCTTAATAAATTCACGATTGATTTC
1 AATACTTATTATTCTGTATAAAAGAGTTCTT-TTAATAAATTCACGATTGATTTC
50694952 AATACTTATTATTCTGTATAAAAGAGTTCTTTTAATAAATTCACGATTGATTTC
1 AATACTTATTATTCTGTATAAAAGAGTTCTTTTAATAAATTCACGATTGATTTC
50695006 A
1 A
50695007 GACTCGATTG
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
54 51 0.96
55 2 0.04
ACGTcount: A:0.36, C:0.10, G:0.09, T:0.45
Consensus pattern (54 bp):
AATACTTATTATTCTGTATAAAAGAGTTCTTTTAATAAATTCACGATTGATTTC
Found at i:50695850 original size:6 final size:6
Alignment explanation
Indices: 50695836--50695867 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
50695826 AAAAAATTGT
*
50695836 TTAAAA TTAATA TTAATA TTAATA TTAATA TT
1 TTAATA TTAATA TTAATA TTAATA TTAATA TT
50695868 TTTACCCTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:50699536 original size:19 final size:19
Alignment explanation
Indices: 50699514--50699562 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
50699504 TTAAAAAGTC
50699514 AAAATAATATATAAAAATT
1 AAAATAATATATAAAAATT
*
50699533 AAAA-AATGTTATAAAAATT
1 AAAATAAT-ATATAAAAATT
50699552 AAAAT-ATATAT
1 AAAATAATATAT
50699563 TTAAATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATAATATATAAAAATT
Found at i:50706743 original size:28 final size:27
Alignment explanation
Indices: 50706706--50706771 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 27
50706696 ACTAATAATT
**
50706706 AAAATTAAAATTTGAAATTTGAAATATA
1 AAAATTAAAATTAAAAATTTGAAA-ATA
*
50706734 AAAATTAAAAATTAAAAATTTTAAAATA
1 AAAATT-AAAATTAAAAATTTGAAAATA
*
50706762 AAAATAAAAA
1 AAAATTAAAA
50706772 ATATTTTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 4 0.12
28 14 0.42
29 15 0.45
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (27 bp):
AAAATTAAAATTAAAAATTTGAAAATA
Found at i:50706744 original size:8 final size:7
Alignment explanation
Indices: 50706727--50706773 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
50706717 TTGAAATTTG
50706727 AAATATAA
1 AAAT-TAA
50706735 AAATTAA
1 AAATTAA
50706742 AAATTAA
1 AAATTAA
*
50706749 AAATTTTA
1 AAA-TTAA
50706757 AAA-TAA
1 AAATTAA
*
50706763 AAATAAA
1 AAATTAA
50706770 AAAT
1 AAAT
50706774 ATTTTCAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
6 5 0.15
7 19 0.56
8 10 0.29
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAATTAA
Found at i:50708941 original size:27 final size:26
Alignment explanation
Indices: 50708911--50708963 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
50708901 TAACAATATA
50708911 TGGACTTTT-AATTTAATTTAATTTAAT
1 TGGACTTTTGAATTTAA-TT-ATTTAAT
* *
50708938 TGGAGTTTTGATTTTAATTATTTAAT
1 TGGACTTTTGAATTTAATTATTTAAT
50708964 GTTAGTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 7 0.30
27 10 0.43
28 6 0.26
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (26 bp):
TGGACTTTTGAATTTAATTATTTAAT
Found at i:50710591 original size:19 final size:20
Alignment explanation
Indices: 50710569--50710610 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
50710559 AATGTTTAAA
*
50710569 TTTAATATTTTA-ATATTAT
1 TTTAACATTTTACATATTAT
* *
50710588 TTTAGCATTTTACATTTTAT
1 TTTAACATTTTACATATTAT
50710608 TTT
1 TTT
50710611 TTTCTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTAACATTTTACATATTAT
Found at i:50720216 original size:251 final size:249
Alignment explanation
Indices: 50719856--50720539 Score: 766
Period size: 250 Copynumber: 2.7 Consensus size: 249
50719846 AACTATTTAG
* * * * * * *
50719856 TATTTACTACCAAATGAATAAAAATTGAAAAAAAATTAT-TATCAAACAATCAGAAATATTTACC
1 TATTTACTACCAAATGAATAAAAATTG-AAAAATATTATCAAACAGACAATAAGACATATTT-CA
* * * *
50719920 ACTCAACTAAACAAGATTAAAAACACTGAATCCTTTAGGAAATGAAGAACCATGTTCATAAAAAA
64 ACTCAGCTAAACAAGATTAAAAACACTGAATTCTTTAGAAAATGAAGAACAATGTTCATAAAAAA
*
50719985 TGGATATAAAATTCTTCTGCAAACAAAATAGTTCCTGAAACTGAATTCATTTCACCTTAAAGTAG
129 TGGATATAAAATCCTTCTGCAAACAAAATAGTTCCTGAAACTGAATTCATTTCACCTTAAAGTAG
* * * *
50720050 TGCCATCATCATCATCATC-AA-AAC-CCATTTCCTTTTTCAGGATTCTCAACACGGC
194 TGCCACCATCATCATAAGCAAATAACACCATTTCCTTTTTCAGGATTCTCAACA--AC
*
50720105 TATTTACTACCAAATGAATAAAAATTGAAAATATGATTATCAAACAGACAATAAGACACATTTGC
1 TATTTACTACCAAATGAATAAAAATTGAAAA-AT-ATTATCAAACAGACAATAAGACATATTT-C
* * *
50720170 TACTCAGTTAAACAAGATTAAAAACACTGAATTCATTAGAAAATGAAGAACAATGTT--TGAAAA
63 AACTCAGCTAAACAAGATTAAAAACACTGAATTCTTTAGAAAATGAAGAACAATGTTCAT-AAAA
* * * *
50720233 AATGGATATAAAATCCTTTTGCTAACAAAATAGTTCCTGAAACTGAATTCATTTCACATGAAAGT
127 AATGGATATAAAATCCTTCTGCAAACAAAATAGTTCCTGAAACTGAATTCATTTCACCTTAAAGT
* * * * ** *
50720298 AGTGTCACCATTATCATAAGCAAATAACACCTTTTCTTTTTTCCTGATTCTTAACAAC
192 AGTGCCACCATCATCATAAGCAAATAACACCATTTCCTTTTTCAGGATTCTCAACAAC
* * *
50720356 TATTTCCTACCAAATAAAT-AAAATATGAAACTAAATATGATCAAAC-G---ATCAAG-CATA-T
1 TATTTACTACCAAATGAATAAAAAT-TG-AA--AAATATTATCAAACAGACAAT-AAGACATATT
* * * *
50720414 TAAACTCAGCTGAACAAGATTAAAAACATTG-TTTCTTTAGAAAATGAAGAACAATGTTCATAAA
61 TCAACTCAGCTAAACAAGATTAAAAACACTGAATTCTTTAGAAAATGAAGAACAATGTTCATAAA
* * * *
50720478 AAATGTATATAACATCCTGCTGCAAACAAAATAGATCCTGAGAACTGAATTCATTTCACCTT
126 AAATGGATATAAAATCCTTCTGCAAACAAAATAGTTCCTGA-AACTGAATTCATTTCACCTT
50720540 GAATTACTGT
Statistics
Matches: 370, Mismatches: 50, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
245 25 0.07
246 63 0.17
247 21 0.06
248 9 0.02
249 32 0.09
250 90 0.24
251 90 0.24
252 14 0.04
253 24 0.06
254 2 0.01
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (249 bp):
TATTTACTACCAAATGAATAAAAATTGAAAAATATTATCAAACAGACAATAAGACATATTTCAAC
TCAGCTAAACAAGATTAAAAACACTGAATTCTTTAGAAAATGAAGAACAATGTTCATAAAAAATG
GATATAAAATCCTTCTGCAAACAAAATAGTTCCTGAAACTGAATTCATTTCACCTTAAAGTAGTG
CCACCATCATCATAAGCAAATAACACCATTTCCTTTTTCAGGATTCTCAACAAC
Found at i:50724138 original size:30 final size:32
Alignment explanation
Indices: 50724079--50724142 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 32
50724069 TAGTAAAGGT
* *
50724079 AAAATTATACTTTAACCCTTTTTAAAATTATA
1 AAAATTATAATTTAACCCTTTTAAAAATTATA
*
50724111 AAAATT-TAATTTAATCC-TTTAAAAATTATA
1 AAAATTATAATTTAACCCTTTTAAAAATTATA
50724141 AA
1 AA
50724143 GATATACACT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 14 0.48
31 9 0.31
32 6 0.21
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.42
Consensus pattern (32 bp):
AAAATTATAATTTAACCCTTTTAAAAATTATA
Found at i:50725412 original size:7 final size:7
Alignment explanation
Indices: 50725397--50725439 Score: 77
Period size: 7 Copynumber: 6.1 Consensus size: 7
50725387 TTCCCAAAGG
*
50725397 TAATTTT
1 TAATATT
50725404 TAATATT
1 TAATATT
50725411 TAATATT
1 TAATATT
50725418 TAATATT
1 TAATATT
50725425 TAATATT
1 TAATATT
50725432 TAATATT
1 TAATATT
50725439 T
1 T
50725440 TCTGTTTATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TAATATT
Found at i:50737275 original size:111 final size:113
Alignment explanation
Indices: 50737022--50737325 Score: 313
Period size: 108 Copynumber: 2.7 Consensus size: 113
50737012 AATAGTTTCA
* * ** *
50737022 CTATGTATGCAGTATTGCTAAATCTAGTTCTAGCTAATAGCTATCATTTTGGAATCATATGTGAT
1 CTATGTATGCAGTATGGTTAAATCT-G--CTAG-TTCTAGCTATCATTTTGGAATCATATATGAT
* * * **
50737087 TTTCTAATATAAACC---TATGGAAAATGCTATGGTATTGGACTGCACTTTGTCCT
62 TTTGT-ATATAAACCTATTATAGAAAATGCTATGGTATT-G--TGCACTTAGTCAG
* *
50737140 CTATGTATGCGGTATGGTTAAATCTGCTAGTTCTAGCTGTCATTTTGGAATCATATATGATTTTG
1 CTATGTATGCAGTATGGTTAAATCTGCTAGTTCTAGCTATCATTTTGGAATCATATATGATTTTG
*
50737205 TATATAAACCTATATATAGTAAATGCTATGGTA-T-T-CACTTAGTCAG
66 TATATAAACCTAT-TATAGAAAATGCTATGGTATTGTGCACTTAGTCAG
*
50737251 CTATGTATGCAGTATGGTTAAA--T-CTAGTTCTAGCTATCATTTTGGAATCAT-TGATGATTGT
1 CTATGTATGCAGTATGGTTAAATCTGCTAGTTCTAGCTATCATTTTGGAATCATAT-ATGATTTT
*
50737312 GTTTATAAACCTAT
65 GTATATAAACCTAT
50737326 GGGAAATGCT
Statistics
Matches: 164, Mismatches: 17, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
107 1 0.01
108 47 0.29
109 1 0.01
111 29 0.18
112 1 0.01
113 9 0.05
114 31 0.19
115 4 0.02
116 1 0.01
117 18 0.11
118 22 0.13
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.40
Consensus pattern (113 bp):
CTATGTATGCAGTATGGTTAAATCTGCTAGTTCTAGCTATCATTTTGGAATCATATATGATTTTG
TATATAAACCTATTATAGAAAATGCTATGGTATTGTGCACTTAGTCAG
Found at i:50740377 original size:21 final size:21
Alignment explanation
Indices: 50740353--50740395 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
50740343 AAATTCATTA
*
50740353 ATATTCTT-TTTGAATTTGTAT
1 ATATTCTTATTTAAATTT-TAT
*
50740374 ATATTTTTATTTAAATTTTAT
1 ATATTCTTATTTAAATTTTAT
50740395 A
1 A
50740396 AAAAATTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (21 bp):
ATATTCTTATTTAAATTTTAT
Found at i:50740558 original size:28 final size:28
Alignment explanation
Indices: 50740505--50740559 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
50740495 ATGTAATGCC
*
50740505 GAAAATATAGTTTAAGTATATTTTTATA
1 GAAAATATAGTTTAAGTATATATTTATA
*
50740533 GAAAATATAGTTTAGGTAT-TAATTTAT
1 GAAAATATAGTTTAAGTATAT-ATTTAT
50740560 TATAACCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 23 0.96
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (28 bp):
GAAAATATAGTTTAAGTATATATTTATA
Found at i:50742370 original size:79 final size:79
Alignment explanation
Indices: 50742239--50742398 Score: 320
Period size: 79 Copynumber: 2.0 Consensus size: 79
50742229 AAAATAGCCT
50742239 AATTTTAAAGTACAAATAACTTGTTTATACCTATCATAAAATGCTTTGAATTGGACTTCAAGAAC
1 AATTTTAAAGTACAAATAACTTGTTTATACCTATCATAAAATGCTTTGAATTGGACTTCAAGAAC
50742304 CCGAAAACAAATCG
66 CCGAAAACAAATCG
50742318 AATTTTAAAGTACAAATAACTTGTTTATACCTATCATAAAATGCTTTGAATTGGACTTCAAGAAC
1 AATTTTAAAGTACAAATAACTTGTTTATACCTATCATAAAATGCTTTGAATTGGACTTCAAGAAC
50742383 CCGAAAACAAATCG
66 CCGAAAACAAATCG
50742397 AA
1 AA
50742399 GTTACTTATA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.30
Consensus pattern (79 bp):
AATTTTAAAGTACAAATAACTTGTTTATACCTATCATAAAATGCTTTGAATTGGACTTCAAGAAC
CCGAAAACAAATCG
Found at i:50743399 original size:25 final size:24
Alignment explanation
Indices: 50743342--50743399 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 24
50743332 TTAATGATGT
*
50743342 ATATTTAAAATAAAGTAATTAATG
1 ATATTTAAAAAAAAGTAATTAATG
50743366 A-ATTGTTAAAAGAAAAGTAATTAATG
1 ATA-T-TTAAAA-AAAAGTAATTAATG
50743392 ATATTTAA
1 ATATTTAA
50743400 TTTAGTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 1 0.03
24 2 0.07
25 10 0.34
26 15 0.52
27 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.36
Consensus pattern (24 bp):
ATATTTAAAAAAAAGTAATTAATG
Found at i:50744198 original size:21 final size:21
Alignment explanation
Indices: 50744174--50744219 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
50744164 TTTATCCCTT
*
50744174 TAAAAATTTATAATTCAATTC
1 TAAAAATTTAAAATTCAATTC
* **
50744195 TAAAATTTTAAAATTCTTTTC
1 TAAAAATTTAAAATTCAATTC
50744216 TAAA
1 TAAA
50744220 TGCCCCTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (21 bp):
TAAAAATTTAAAATTCAATTC
Found at i:50747298 original size:27 final size:27
Alignment explanation
Indices: 50747260--50747315 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
50747250 GGGGGGGGGG
50747260 ACAAAGTGTAGTTTTACCATTAAACTA
1 ACAAAGTGTAGTTTTACCATTAAACTA
50747287 ACAAAGTGTAGTTTTACCATTAAACTA
1 ACAAAGTGTAGTTTTACCATTAAACTA
50747314 AC
1 AC
50747316 TTATAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (27 bp):
ACAAAGTGTAGTTTTACCATTAAACTA
Found at i:50749483 original size:30 final size:30
Alignment explanation
Indices: 50749387--50749473 Score: 138
Period size: 30 Copynumber: 2.9 Consensus size: 30
50749377 ATCGACCGCA
*
50749387 GGGAGAAACCAAGGAAAAGCACCGATACCC
1 GGGAAAAACCAAGGAAAAGCACCGATACCC
* *
50749417 GGGACAAGCCAAGGAAAAGCACCGATACCC
1 GGGAAAAACCAAGGAAAAGCACCGATACCC
*
50749447 GGGAAAAACCAAGGAAAAGCATCGATA
1 GGGAAAAACCAAGGAAAAGCACCGATA
50749474 GGCCTGAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.45, C:0.24, G:0.26, T:0.05
Consensus pattern (30 bp):
GGGAAAAACCAAGGAAAAGCACCGATACCC
Found at i:50750717 original size:13 final size:14
Alignment explanation
Indices: 50750701--50750741 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
50750691 TTTAAATTTT
*
50750701 ATTTTAAAATTA-A
1 ATTTTAAAATAATA
50750714 ATTTTAAAAATAATA
1 ATTTT-AAAATAATA
50750729 ATTTT-AAATAATA
1 ATTTTAAAATAATA
50750742 TTATTCGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 13 0.52
14 6 0.24
15 6 0.24
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTTTAAAATAATA
Found at i:50752051 original size:55 final size:56
Alignment explanation
Indices: 50751960--50752085 Score: 200
Period size: 55 Copynumber: 2.3 Consensus size: 56
50751950 AGAAATAGCT
* * *
50751960 TTTGAGTAATCTCACAATTACAATCTGATTATAAACTCCATTTCATTGGAGAACCC
1 TTTGAGTAATCTCATAATTACAATCTGATTACAAACTCCATTTCATTGAAGAACCC
* *
50752016 TTTGAGTAATCTCATAA-TACAATCTGATTACAAACTTCGTTTCATTGAAGAACCC
1 TTTGAGTAATCTCATAATTACAATCTGATTACAAACTCCATTTCATTGAAGAACCC
50752071 TTTGAGTAATCTCAT
1 TTTGAGTAATCTCAT
50752086 CCTTTTTCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
55 49 0.75
56 16 0.25
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (56 bp):
TTTGAGTAATCTCATAATTACAATCTGATTACAAACTCCATTTCATTGAAGAACCC
Found at i:50754072 original size:30 final size:29
Alignment explanation
Indices: 50754038--50754101 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
50754028 TTGGACTTCC
* * *
50754038 TTGATTCTTTTTAATAGTATAAGGACTAAA
1 TTGATTC-ATTTAATAATAGAAGGACTAAA
* *
50754068 TTGATTCATTTAATAATAGAGGGACTAAT
1 TTGATTCATTTAATAATAGAAGGACTAAA
50754097 TTGAT
1 TTGAT
50754102 CTAGTCTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 22 0.76
30 7 0.24
ACGTcount: A:0.36, C:0.06, G:0.16, T:0.42
Consensus pattern (29 bp):
TTGATTCATTTAATAATAGAAGGACTAAA
Found at i:50755658 original size:21 final size:21
Alignment explanation
Indices: 50755616--50755658 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
50755606 ATTAGCTCTA
* **
50755616 TTAAATAGTATATGATGTTTT
1 TTAAATAGTAAATGATAATTT
*
50755637 TTAAATAGTAAATGTTAATTT
1 TTAAATAGTAAATGATAATTT
50755658 T
1 T
50755659 ATTCTAATTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (21 bp):
TTAAATAGTAAATGATAATTT
Found at i:50755738 original size:29 final size:30
Alignment explanation
Indices: 50755688--50755744 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
50755678 TATTCTTTTC
*
50755688 AATAGTACAGGGATTAAATTGAT-TTATTT
1 AATAGTACAGGGACTAAATTGATCTTATTT
* *
50755717 AATAGTAGAGGGACTAATTTGATCTTAT
1 AATAGTACAGGGACTAAATTGATCTTAT
50755745 AATATAGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.39
Consensus pattern (30 bp):
AATAGTACAGGGACTAAATTGATCTTATTT
Found at i:50755748 original size:28 final size:28
Alignment explanation
Indices: 50755688--50755752 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
50755678 TATTCTTTTC
* *
50755688 AATAGTACAGGGATTAAATTGATTTATTT
1 AATAGTAGAGGGACTAAATTGATTTA-TT
*
50755717 AATAGTAGAGGGACTAATTTGATCTTA-T
1 AATAGTAGAGGGACTAAATTGAT-TTATT
50755745 AATA-TAGA
1 AATAGTAGA
50755753 TTCAATGATC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 4 0.12
28 5 0.16
29 20 0.62
30 3 0.09
ACGTcount: A:0.40, C:0.05, G:0.18, T:0.37
Consensus pattern (28 bp):
AATAGTAGAGGGACTAAATTGATTTATT
Found at i:50762163 original size:3 final size:3
Alignment explanation
Indices: 50762155--50762184 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
50762145 ATTTCATAAG
50762155 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
50762185 TTCTTGCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:50776342 original size:18 final size:19
Alignment explanation
Indices: 50776307--50776345 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
50776297 ATAATAACTT
*
50776307 TTTAAATTAATAATTATAA
1 TTTAAATTAATAACTATAA
50776326 TTTAAATT-ATAACTATAA
1 TTTAAATTAATAACTATAA
50776344 TT
1 TT
50776346 ATTTTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTAAATTAATAACTATAA
Found at i:50776360 original size:24 final size:24
Alignment explanation
Indices: 50776316--50776361 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
50776306 TTTTAAATTA
50776316 ATAATTATAATTTAAATTATAACT
1 ATAATTATAATTTAAATTATAACT
*
50776340 ATAATTAT-TTTTAAATGTATAA
1 ATAATTATAATTTAAAT-TATAA
50776362 TTATCATAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
ATAATTATAATTTAAATTATAACT
Found at i:50782577 original size:2 final size:2
Alignment explanation
Indices: 50782568--50782621 Score: 101
Period size: 2 Copynumber: 27.5 Consensus size: 2
50782558 CCCTCTCTTA
50782568 CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
50782609 CT CT CT CT CT CT C
1 CT CT CT CT CT CT C
50782622 CCTATTATAT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 50 0.98
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:50794800 original size:24 final size:27
Alignment explanation
Indices: 50794759--50794812 Score: 69
Period size: 24 Copynumber: 2.1 Consensus size: 27
50794749 ATTATTTATA
50794759 TTATATTATTTTAATATTTAAT-AAAAT
1 TTATATTATTTT-ATATTTAATGAAAAT
*
50794786 TTATATT-TTTT-TATTTATTGAAAAT
1 TTATATTATTTTATATTTAATGAAAAT
50794811 TT
1 TT
50794813 TTATATAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 7 0.28
25 7 0.28
26 4 0.16
27 7 0.28
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (27 bp):
TTATATTATTTTATATTTAATGAAAAT
Found at i:50799477 original size:17 final size:17
Alignment explanation
Indices: 50799457--50799492 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
50799447 ATTTGGTCAG
50799457 TTTTAATTTTTGTAATTT
1 TTTTAATTTTT-TAATTT
*
50799475 TTTTTATTTTTTAATTT
1 TTTTAATTTTTTAATTT
50799492 T
1 T
50799493 CAATTCCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTAATTTTTTAATTT
Found at i:50811393 original size:30 final size:30
Alignment explanation
Indices: 50811322--50811493 Score: 188
Period size: 30 Copynumber: 5.8 Consensus size: 30
50811312 CTTCTTGGTC
* * * *
50811322 GCAGAAGCCACAGAAGCACAGACGGACCAT
1 GCAGAAGCCGCAGAAGCACCGACTGTCCAT
*
50811352 G-AGAAGCCGCAGAAGCACCGACTGTTCAT
1 GCAGAAGCCGCAGAAGCACCGACTGTCCAT
* *
50811381 GCAGAAGTCGCAGAAGCACCGATTGTCCAT
1 GCAGAAGCCGCAGAAGCACCGACTGTCCAT
* * *
50811411 GCAGAAGCTGTAAAAG-AGCCGACTGTCCAT
1 GCAGAAGCCGCAGAAGCA-CCGACTGTCCAT
* *
50811441 TCCGAAGCCGCAGAAGCACCGACTGTCCAT
1 GCAGAAGCCGCAGAAGCACCGACTGTCCAT
*
50811471 GCA-ATAGCCGCAGAAGCGCCGAC
1 GCAGA-AGCCGCAGAAGCACCGAC
50811494 AATTGAGGAA
Statistics
Matches: 117, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
29 26 0.22
30 90 0.77
31 1 0.01
ACGTcount: A:0.32, C:0.30, G:0.27, T:0.12
Consensus pattern (30 bp):
GCAGAAGCCGCAGAAGCACCGACTGTCCAT
Found at i:50812000 original size:30 final size:30
Alignment explanation
Indices: 50811966--50812136 Score: 207
Period size: 30 Copynumber: 5.7 Consensus size: 30
50811956 TTCCTCAATT
*
50811966 GTCGGCGCTTCTGCGGCTTTTGCATGGACA
1 GTCGGCGCTTCTGCGGCTTCTGCATGGACA
* *
50811996 GTCGGCGCTTCTGCGGCTTCGGCATGGATA
1 GTCGGCGCTTCTGCGGCTTCTGCATGGACA
* *
50812026 GTCGGCGCTTCTGCAGCTTCGGCATGGACA
1 GTCGGCGCTTCTGCGGCTTCTGCATGGACA
* * *
50812056 GTCGGCGCTTCTGCGGCTTTTGCATGGTCC
1 GTCGGCGCTTCTGCGGCTTCTGCATGGACA
* * ** *
50812086 GTCGACGCTTTTATGGCTTCTGCATGGACC
1 GTCGGCGCTTCTGCGGCTTCTGCATGGACA
* *
50812116 GTCGGCGTTTCTGAGGCTTCT
1 GTCGGCGCTTCTGCGGCTTCT
50812137 AAGAGTTCTC
Statistics
Matches: 120, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 120 1.00
ACGTcount: A:0.09, C:0.27, G:0.33, T:0.30
Consensus pattern (30 bp):
GTCGGCGCTTCTGCGGCTTCTGCATGGACA
Found at i:50812893 original size:155 final size:152
Alignment explanation
Indices: 50812695--50813283 Score: 810
Period size: 155 Copynumber: 3.8 Consensus size: 152
50812685 TTTTTTATTG
* * * *
50812695 AAAGTAATAAAAATCGAAAAAAAAATATGAACAAATGGCCGAAATAAGGGTTTTTTACTAAATTT
1 AAAGTAAT-AAAATTGAGAAAAAAATACGAACAAAAGGCCGAAATAAGGGTTTTTT-CTAAATTT
* * *
50812760 ATTTAAAAAACACAATTAATTAATACATTTCAAATATAATATACTAAAATAATGTAAAATAATAA
64 ATTTAAAAAACACAATAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
50812825 AATTAGAAAATAGTATATTTTTTA
129 AATTAGAAAATAGTATATTTTTTA
*
50812849 AAAGTAATAAAATTAGCAGAAAAAAATACGAACAAAAGGTCGAAATAAGGGTTTTTTACTAAATT
1 AAAGTAATAAAATT-G-AGAAAAAAATACGAACAAAAGGCCGAAATAAGGGTTTTTT-CTAAATT
* * *
50812914 TATTTAAAAAACACAATTAATTAATACATTTCAAACATAATGTGCTAAAATAATGTGAAATAATA
63 TATTTAAAAAACACAATAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
* *
50812979 AAA-TACAAAAATAATATATTTTTATTA
128 AAATTA-GAAAATAGTATA-TTTT-TTA
* * * *
50813006 AAAGTAATAAAATCCG-GAAAAAAATACGAATAAAGGGCCGAAATAAGGGTATTTTT-TTAATTT
1 AAAGTAATAAAAT-TGAGAAAAAAATACGAACAAAAGGCCGAAATAAGGGT-TTTTTCTAAATTT
* *
50813069 ATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
64 ATTTAAAAAACACAATAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
50813134 AATTAGAAAATAGTAT-TTTTTT-
129 AATTAGAAAATAGTATATTTTTTA
* * * * *
50813156 AAAGTAATAAACTCTGGGAAAAAAATATGAACAAAAGGTCGAAATAAGGGTTTTTTTTAAATTTA
1 AAAGTAATAAAAT-TGAGAAAAAAATACGAACAAAAGGCCGAAATAAGGGTTTTTTCTAAATTTA
* *
50813221 TTTAAAAAACACAGTAAATTAATACATTTCAAACATGATGTACTAAAATAATGTAAAATAATA
65 TTTAAAAAACACAATAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
50813284 TATATTTATT
Statistics
Matches: 392, Mismatches: 33, Indels: 23
0.88 0.07 0.05
Matches are distributed among these distances:
150 19 0.05
151 99 0.25
152 4 0.01
153 5 0.01
154 88 0.22
155 151 0.39
156 9 0.02
157 17 0.04
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (152 bp):
AAAGTAATAAAATTGAGAAAAAAATACGAACAAAAGGCCGAAATAAGGGTTTTTTCTAAATTTAT
TTAAAAAACACAATAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
TTAGAAAATAGTATATTTTTTA
Found at i:50813375 original size:135 final size:136
Alignment explanation
Indices: 50813175--50813418 Score: 411
Period size: 135 Copynumber: 1.8 Consensus size: 136
50813165 AACTCTGGGA
* * *
50813175 AAAAAATATGAACAAAAGGTCGAAATAAGGGTTTTTTTTAAATTTATTTAAAAAACACAGTAAAT
1 AAAAAATACGAACAAAAGGTCGAAATAAAGGTTTTTTTTAAATTTATTTAAAAAACACACTAAAT
* *
50813240 TAATACATTTCAAACATGATGTACTAAAATAATGTAAAATAATATATATTTATTGAAAATAATAA
66 TAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATATATATTTATTGAAAATAATAA
50813305 AATCTG
131 AATCTG
*
50813311 AAAAAATACGAACAAAAGG-CTGAAATAAAGGTTTTTTTT-AATTTATTTAAATAACACACTAAA
1 AAAAAATACGAACAAAAGGTC-GAAATAAAGGTTTTTTTTAAATTTATTTAAAAAACACACTAAA
50813374 TTAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATA
65 TTAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATA
50813419 AAATTAGACA
Statistics
Matches: 101, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
135 66 0.65
136 35 0.35
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (136 bp):
AAAAAATACGAACAAAAGGTCGAAATAAAGGTTTTTTTTAAATTTATTTAAAAAACACACTAAAT
TAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATATATATTTATTGAAAATAATAA
AATCTG
Found at i:50817281 original size:19 final size:19
Alignment explanation
Indices: 50817243--50817282 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
50817233 ATGAAAAGTT
*
50817243 ATAATAAATTTAGTTTTTA
1 ATAATAAATTTAGTTATTA
50817262 ATAATTAAATTT-GTTATTA
1 ATAA-TAAATTTAGTTATTA
50817281 AT
1 AT
50817283 TAAATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
ATAATAAATTTAGTTATTA
Found at i:50818682 original size:6 final size:6
Alignment explanation
Indices: 50818671--50818697 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
50818661 AACAGGTATG
50818671 TTTTAT TTTTAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTT
50818698 GCTAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:50819894 original size:5 final size:5
Alignment explanation
Indices: 50819879--50819939 Score: 60
Period size: 5 Copynumber: 12.6 Consensus size: 5
50819869 TTAGCCTATG
50819879 TTTTA -TTTA TTTTA TTTTA TTTTA TTTT- TTATT- TTTTA TTTT- TTATT-
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TT-TTA
50819926 TTTTA TTTTTA TTT
1 TTTTA -TTTTA TTT
50819940 AAAACTGTTC
Statistics
Matches: 50, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
4 12 0.24
5 33 0.66
6 5 0.10
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTTA
Found at i:50819910 original size:7 final size:7
Alignment explanation
Indices: 50819884--50819939 Score: 80
Period size: 7 Copynumber: 8.0 Consensus size: 7
50819874 CTATGTTTTA
50819884 TTTATTT
1 TTTATTT
50819891 TATT-TTAT
1 T-TTATT-T
50819899 TTTATTT
1 TTTATTT
50819906 TTTATTT
1 TTTATTT
50819913 TTTATTT
1 TTTATTT
50819920 TTTATTT
1 TTTATTT
50819927 TTTA-TT
1 TTTATTT
50819933 TTTATTT
1 TTTATTT
50819940 AAAACTGTTC
Statistics
Matches: 45, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.13
7 33 0.73
8 6 0.13
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTATTT
Found at i:50829825 original size:150 final size:151
Alignment explanation
Indices: 50829411--50829864 Score: 653
Period size: 154 Copynumber: 3.0 Consensus size: 151
50829401 CAATTGTTCG
* * *
50829411 TATTTCAGTCCTTTGTTCATATTTTTTTTCTTCAGATTTTATTACTTTTAAAAAATATACTATTT
1 TATTTCAGTCCTTTGTTCGTA-TTTTTTTC-TCGGATTTTATTAC-TTTAAAAAATATATTATTT
* * *
50829476 TCTAATTTTATTATTTTAGATTATTTTAGTATATTATGTTTGAAATGTATTAATTTAGTGTATTT
63 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
50829541 TTTAAATAAATTAAAAAAAACCCCT
128 TTTAAATAAATTAAAAAAAA-CCCT
* * *
50829566 TATTTCAATCCTTTATTCGTATTTTTTT-TCGGATTTTATTATTTTCAATAAATATATATTATTT
1 TATTTCAGTCCTTTGTTCGTATTTTTTTCTCGGATTTTATTACTTT-AA-AAA-ATATATTATTT
* *
50829630 TCGT-ATTTTATTATTTTACATTATTTTAGTACATTATGCTTGAAATGTATTAATTTATTGTGTT
63 TC-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTT
*
50829694 TTTTAAATAAATTTAAAAAAACCCT
127 TTTTAAATAAATTAAAAAAAACCCT
* * * *
50829719 TATTTCGGTCTTTTGTTCGTATTTTTTTCCCGGAGTTTATTACTTTAAAAAA-ATATTATTTTCT
1 TATTTCAGTCCTTTGTTCGTATTTTTTTCTCGGATTTTATTACTTTAAAAAATATATTATTTTCT
* *
50829783 AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGCATTCATTTAGTGTGTTTTTT
66 AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTTT
50829848 AAATAAATTAAAAAAAA
131 AAATAAATTAAAAAAAA
50829865 AAACCCTTAT
Statistics
Matches: 269, Mismatches: 24, Indels: 17
0.87 0.08 0.05
Matches are distributed among these distances:
149 1 0.00
150 87 0.32
151 4 0.01
152 17 0.06
153 33 0.12
154 108 0.40
155 19 0.07
ACGTcount: A:0.31, C:0.08, G:0.07, T:0.53
Consensus pattern (151 bp):
TATTTCAGTCCTTTGTTCGTATTTTTTTCTCGGATTTTATTACTTTAAAAAATATATTATTTTCT
AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTTT
AAATAAATTAAAAAAAACCCT
Found at i:50832053 original size:48 final size:48
Alignment explanation
Indices: 50831993--50832142 Score: 266
Period size: 48 Copynumber: 3.1 Consensus size: 48
50831983 TCTGAGTGGG
* *
50831993 ATAA-AATACATTCAGGGGCAGAAACAATTAAATTATTTTACACCAGA
1 ATAATAATACATTCAGGGACAGAAACATTTAAATTATTTTACACCAGA
*
50832040 ATAATAATACATTCAGGGACAGAACCATTTAAATTATTTTACACCAGA
1 ATAATAATACATTCAGGGACAGAAACATTTAAATTATTTTACACCAGA
50832088 ATAATAATACATTCAGGGACAGAAACATTTAAATTATTTTACACCAGA
1 ATAATAATACATTCAGGGACAGAAACATTTAAATTATTTTACACCAGA
50832136 ATAATAA
1 ATAATAA
50832143 CTTCATTAAT
Statistics
Matches: 98, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
47 4 0.04
48 94 0.96
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.28
Consensus pattern (48 bp):
ATAATAATACATTCAGGGACAGAAACATTTAAATTATTTTACACCAGA
Found at i:50844119 original size:2 final size:2
Alignment explanation
Indices: 50844114--50844150 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
50844104 ATATATATAT
50844114 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
50844151 ACATCATTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:50844579 original size:20 final size:21
Alignment explanation
Indices: 50844551--50844594 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
50844541 TGGATCAAGG
50844551 AGAAAATCA-CAAATCAGCTA
1 AGAAAATCAGCAAATCAGCTA
* **
50844571 AGAACATCAGTGAATCAGCTA
1 AGAAAATCAGCAAATCAGCTA
50844592 AGA
1 AGA
50844595 TAAGATGGCG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.50, C:0.18, G:0.16, T:0.16
Consensus pattern (21 bp):
AGAAAATCAGCAAATCAGCTA
Found at i:50874604 original size:17 final size:18
Alignment explanation
Indices: 50874573--50874636 Score: 53
Period size: 17 Copynumber: 3.6 Consensus size: 18
50874563 ATAAATAGAA
50874573 ATGAGAATGAATGAGTTG
1 ATGAGAATGAATGAGTTG
*
50874591 ATGA-AATGATTGAGTTTG
1 ATGAGAATGAATGAG-TTG
*
50874609 TATG-GATTGGAATGAGTT-
1 -ATGAGAAT-GAATGAGTTG
*
50874627 ATTAGAATGA
1 ATGAGAATGA
50874637 GATGTTGAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 11
0.69 0.10 0.21
Matches are distributed among these distances:
17 13 0.36
18 10 0.28
19 7 0.19
20 6 0.17
ACGTcount: A:0.36, C:0.00, G:0.30, T:0.34
Consensus pattern (18 bp):
ATGAGAATGAATGAGTTG
Found at i:50877870 original size:30 final size:30
Alignment explanation
Indices: 50877820--50877876 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
50877810 GATTTAACAT
* * *
50877820 TTCAGTAATTTAAATTAAAATTTTAAATAA
1 TTCAATAAATTAAATGAAAATTTTAAATAA
50877850 TTCAATAAATTAAATGAAAATTTTAAA
1 TTCAATAAATTAAATGAAAATTTTAAA
50877877 AAAAAATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.40
Consensus pattern (30 bp):
TTCAATAAATTAAATGAAAATTTTAAATAA
Found at i:50881457 original size:22 final size:23
Alignment explanation
Indices: 50881418--50881466 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
50881408 AAGCAAAATA
*
50881418 AAATTGCTTTATTAAACA-TTG-
1 AAATTCCTTTATTAAACACTTGT
*
50881439 AAATTCCTTATATTTAACACTTGT
1 AAATTCCTT-TATTAAACACTTGT
50881463 AAAT
1 AAAT
50881467 ATCGAACAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 8 0.35
22 8 0.35
23 3 0.13
24 4 0.17
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (23 bp):
AAATTCCTTTATTAAACACTTGT
Found at i:50885733 original size:16 final size:16
Alignment explanation
Indices: 50885699--50885734 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
50885689 ACACCGGCAC
* *
50885699 AAAGCCTGCTAGGCTT
1 AAAGCCTGCTAGACAT
50885715 AAAGCCTGCTAGACAT
1 AAAGCCTGCTAGACAT
50885731 AAAG
1 AAAG
50885735 TCTGAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (16 bp):
AAAGCCTGCTAGACAT
Found at i:50886077 original size:2 final size:2
Alignment explanation
Indices: 50886072--50886100 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
50886062 ACACACACAC
50886072 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50886101 ACTCATACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50888809 original size:31 final size:31
Alignment explanation
Indices: 50888760--50888822 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
50888750 TCTTAAATAA
*
50888760 TTTTAAAGAGTTTTTATTATGATTCAATTAC
1 TTTTAAAGAGTTTTTATTAAGATTCAATTAC
50888791 TTTTGAAAGAG-TTTTATTAAGATTCAATTAC
1 TTTT-AAAGAGTTTTTATTAAGATTCAATTAC
50888822 T
1 T
50888823 CTTATAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 24 0.80
32 6 0.20
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.49
Consensus pattern (31 bp):
TTTTAAAGAGTTTTTATTAAGATTCAATTAC
Found at i:50894576 original size:6 final size:6
Alignment explanation
Indices: 50894562--50894592 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
50894552 CGGAGTTGAT
*
50894562 GTCGCA GTCGGA GTCGGA GTCGGA GTCGGA G
1 GTCGGA GTCGGA GTCGGA GTCGGA GTCGGA G
50894593 AGCCCAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.16, C:0.19, G:0.48, T:0.16
Consensus pattern (6 bp):
GTCGGA
Found at i:50904883 original size:18 final size:18
Alignment explanation
Indices: 50904857--50904891 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50904847 TTCGGATTGA
* *
50904857 CCATGGCCACCTTATTAG
1 CCATCGCCACCCTATTAG
50904875 CCATCGCCACCCTATTA
1 CCATCGCCACCCTATTA
50904892 TCGACTGTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.40, G:0.11, T:0.26
Consensus pattern (18 bp):
CCATCGCCACCCTATTAG
Found at i:50918335 original size:40 final size:40
Alignment explanation
Indices: 50918290--50918366 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
50918280 AGCTTTTGGG
50918290 CAATATATTTTAAGTCATGGTAACTTTATAAAAACATGAT
1 CAATATATTTTAAGTCATGGTAACTTTATAAAAACATGAT
50918330 CAATATATTTTAAGTCATGGTAACTTTATAAAAACAT
1 CAATATATTTTAAGTCATGGTAACTTTATAAAAACAT
50918367 ATTATTAACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (40 bp):
CAATATATTTTAAGTCATGGTAACTTTATAAAAACATGAT
Found at i:50918401 original size:34 final size:34
Alignment explanation
Indices: 50918363--50918434 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
50918353 CTTTATAAAA
50918363 ACATATTATTAACTATGATCAATATATAACAAAT
1 ACATATTATTAACTATGATCAATATATAACAAAT
50918397 ACATATTATTAACTATGATCAATATATAACAAAT
1 ACATATTATTAACTATGATCAATATATAACAAAT
50918431 ACAT
1 ACAT
50918435 GAAAGATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.35
Consensus pattern (34 bp):
ACATATTATTAACTATGATCAATATATAACAAAT
Found at i:50918426 original size:17 final size:17
Alignment explanation
Indices: 50918372--50918426 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
50918362 AACATATTAT
50918372 TAACTATGATCAATATA
1 TAACTATGATCAATATA
*
50918389 TAAC-A-AAT-ACATATTA
1 TAACTATGATCA-ATA-TA
50918405 TTAACTATGATCAATATA
1 -TAACTATGATCAATATA
50918423 TAAC
1 TAAC
50918427 AAATACATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
14 1 0.03
15 5 0.17
16 3 0.10
17 12 0.40
18 3 0.10
19 5 0.17
20 1 0.03
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (17 bp):
TAACTATGATCAATATA
Found at i:50921667 original size:32 final size:32
Alignment explanation
Indices: 50921630--50921706 Score: 91
Period size: 33 Copynumber: 2.4 Consensus size: 32
50921620 AACTTTTCCG
** *
50921630 GAAAATATTTTCAAAAAATCTGTCAAACAGCA
1 GAAAATATTTTCAAAAAATCAATCAAACACCA
* * *
50921662 GAAAATATTTTACACAGATTCAATCAAACACCA
1 GAAAATATTTT-CAAAAAATCAATCAAACACCA
50921695 GAAAATATTTTC
1 GAAAATATTTTC
50921707 CAATAAGTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
32 12 0.32
33 26 0.68
ACGTcount: A:0.48, C:0.17, G:0.08, T:0.27
Consensus pattern (32 bp):
GAAAATATTTTCAAAAAATCAATCAAACACCA
Found at i:50921762 original size:34 final size:35
Alignment explanation
Indices: 50921696--50921762 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
50921686 CAAACACCAG
50921696 AAAATATTTTCCAATAAGTCATTTTACAGAAAAGT
1 AAAATATTTTCCAATAAGTCATTTTACAGAAAAGT
*
50921731 AAAATATTTTCCAGA-AA-TCATTTTACGGAAAA
1 AAAATATTTTCCA-ATAAGTCATTTTACAGAAAA
50921763 CATTTTACTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 14 0.47
35 15 0.50
36 1 0.03
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAATAAGTCATTTTACAGAAAAGT
Found at i:50926337 original size:60 final size:60
Alignment explanation
Indices: 50926267--50926382 Score: 187
Period size: 60 Copynumber: 1.9 Consensus size: 60
50926257 AAGACTAATA
* *
50926267 TATATCACAAAAATAGTATACATATTTCCTCCAAGTTTTTCAGTGTGTAAACTTAAAATG
1 TATATCACAAAAACAGTATACATATTTCCTCCAAGTTTATCAGTGTGTAAACTTAAAATG
* * *
50926327 TATATCACAAACACAGTATACATATTTTCTCCGAGTTTATCAGTGTGTAAACTTAA
1 TATATCACAAAAACAGTATACATATTTCCTCCAAGTTTATCAGTGTGTAAACTTAA
50926383 CTATTTAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.36
Consensus pattern (60 bp):
TATATCACAAAAACAGTATACATATTTCCTCCAAGTTTATCAGTGTGTAAACTTAAAATG
Found at i:50928769 original size:19 final size:19
Alignment explanation
Indices: 50928741--50928880 Score: 90
Period size: 19 Copynumber: 7.1 Consensus size: 19
50928731 AGAAACGCCA
*
50928741 ATGAAGATTGTAATTTTAT
1 ATGAATATTGTAATTTTAT
50928760 ATGAATATTGTAATTACTTTAT
1 ATGAATATTGTAA-T--TTTAT
*
50928782 AATTAA-ATTTGT-ATTTATAGTT
1 -ATGAATA-TTGTAATTT-TA--T
* * * *
50928804 TTGCAT-TAGT-ATTTTGT
1 ATGAATATTGTAATTTTAT
50928821 ATGAATATTGTAATTTTTTAT
1 ATGAATATTGTAA--TTTTAT
*
50928842 ATGAATATTGTAATTTTGT
1 ATGAATATTGTAATTTTAT
*
50928861 ATGAATATTGTAATATTAT
1 ATGAATATTGTAATTTTAT
50928880 A
1 A
50928881 ATTTTGTATG
Statistics
Matches: 94, Mismatches: 14, Indels: 26
0.70 0.10 0.19
Matches are distributed among these distances:
17 5 0.05
18 3 0.03
19 39 0.41
20 10 0.11
21 21 0.22
22 8 0.09
23 8 0.09
ACGTcount: A:0.34, C:0.01, G:0.12, T:0.52
Consensus pattern (19 bp):
ATGAATATTGTAATTTTAT
Found at i:50928844 original size:21 final size:20
Alignment explanation
Indices: 50928815--50928874 Score: 95
Period size: 19 Copynumber: 3.0 Consensus size: 20
50928805 TGCATTAGTA
50928815 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAA-T
*
50928836 TTTTATATGAATATTGTAA-
1 TTTTGTATGAATATTGTAAT
50928855 TTTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAAT
50928875 ATTATAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
19 18 0.50
21 18 0.50
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (20 bp):
TTTTGTATGAATATTGTAAT
Found at i:50928875 original size:8 final size:8
Alignment explanation
Indices: 50928824--50928914 Score: 55
Period size: 8 Copynumber: 11.1 Consensus size: 8
50928814 ATTTTGTATG
50928824 AATATTGT
1 AATATTGT
*
50928832 AAT-TTTT
1 AATATTGT
*
50928839 TATA-TG-
1 AATATTGT
50928845 AATATTGT
1 AATATTGT
*
50928853 AATTTTGTAT
1 AATATTG--T
50928863 GAATATTGT
1 -AATATTGT
*
50928872 AATATTAT
1 AATATTGT
*
50928880 AATTTTGTAT
1 AATATTG--T
50928890 GAATATTGT
1 -AATATTGT
50928899 AATATTGT
1 AATATTGT
50928907 AAT-TTGT
1 AATATTGT
50928914 A
1 A
50928915 TGAATGTTGT
Statistics
Matches: 64, Mismatches: 10, Indels: 19
0.69 0.11 0.20
Matches are distributed among these distances:
6 3 0.05
7 13 0.20
8 32 0.50
9 2 0.03
10 2 0.03
11 12 0.19
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (8 bp):
AATATTGT
Found at i:50928876 original size:27 final size:27
Alignment explanation
Indices: 50928824--50928927 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 27
50928814 ATTTTGTATG
50928824 AATATTGTAATTTT-T-T--ATA-TG-
1 AATATTGTAATTTTGTATGAATATTGT
50928845 AATATTGTAATTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGT
*
50928872 AATATTATAATTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGT
*
50928899 AATATTGTAA-TTTGTATGAATGTTGT
1 AATATTGTAATTTTGTATGAATATTGT
50928925 AAT
1 AAT
50928928 GTCGGGATAT
Statistics
Matches: 74, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.19
22 1 0.01
23 1 0.01
25 3 0.04
26 20 0.27
27 35 0.47
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (27 bp):
AATATTGTAATTTTGTATGAATATTGT
Found at i:50929142 original size:16 final size:15
Alignment explanation
Indices: 50929105--50929152 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
50929095 ATAAATACAA
* *
50929105 AATTAAATAAAATTT
1 AATTATATAAAAGTT
50929120 AATTATATAAAAGTT
1 AATTATATAAAAGTT
*
50929135 ACATTATATAAAAATT
1 A-ATTATATAAAAGTT
50929151 AA
1 AA
50929153 ATTAGTTAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 15 0.52
16 14 0.48
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (15 bp):
AATTATATAAAAGTT
Found at i:50929156 original size:16 final size:16
Alignment explanation
Indices: 50929104--50929156 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
50929094 AATAAATACA
*
50929104 AAATTAAAT-AAAATT
1 AAATTATATAAAAATT
* *
50929119 TAATTATATAAAAGTT
1 AAATTATATAAAAATT
*
50929135 ACATTATATAAAAATT
1 AAATTATATAAAAATT
50929151 AAATTA
1 AAATTA
50929157 GTTAACAACA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
15 7 0.23
16 23 0.77
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (16 bp):
AAATTATATAAAAATT
Found at i:50929231 original size:38 final size:38
Alignment explanation
Indices: 50929189--50929270 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
50929179 AAAAAGCCAG
*
50929189 TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTT
1 TTATAATTAAAATTTTAATAAAATAATTTTTAATTTTT
50929227 TTATAATTAAAATTTTAATAAAATAATTTTTAATTTTT
1 TTATAATTAAAATTTTAATAAAATAATTTTTAATTTTT
50929265 TTATAA
1 TTATAA
50929271 ACTTTATATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (38 bp):
TTATAATTAAAATTTTAATAAAATAATTTTTAATTTTT
Found at i:50933083 original size:116 final size:116
Alignment explanation
Indices: 50932879--50933124 Score: 307
Period size: 116 Copynumber: 2.1 Consensus size: 116
50932869 CCAACACTTG
* * * * * * *
50932879 ATGAGTCTTGGGTGTTATGCCGCATTTTGCTATATCGATGCTAATACCTAAAAATGGTTGATCGC
1 ATGAGTCATGGGTGTTATCCCACATTTTGCAATATCGATGCTAATACCTAAAAATGGCTCATCAC
* * * *
50932944 CGAATTATATTCCTTTAAGTCATTGAACTAGGTCCTACAAGCCTATTTCCC
66 CAAATTACATTCCTTTAAGTCATTGAACCAAGTCCTACAAGCCTATTTCCC
* * * * *
50932995 ATGAGTCATGGGTTTTATCCCATATTTTGCAATGTTGATGCTAATACCTAACAATGGCTCATCAC
1 ATGAGTCATGGGTGTTATCCCACATTTTGCAATATCGATGCTAATACCTAAAAATGGCTCATCAC
50933060 CAAATGT-CATT-CTTGTAAGTCATTGAACCAAGTCCTACAAGCCTATTTCCC
66 CAAAT-TACATTCCTT-TAAGTCATTGAACCAAGTCCTACAAGCCTATTTCCC
*
50933111 ATGAGCCATGGGTG
1 ATGAGTCATGGGTG
50933125 CTAAGCCACA
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
115 3 0.03
116 106 0.96
117 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (116 bp):
ATGAGTCATGGGTGTTATCCCACATTTTGCAATATCGATGCTAATACCTAAAAATGGCTCATCAC
CAAATTACATTCCTTTAAGTCATTGAACCAAGTCCTACAAGCCTATTTCCC
Found at i:50933418 original size:116 final size:113
Alignment explanation
Indices: 50932961--50933478 Score: 403
Period size: 116 Copynumber: 4.5 Consensus size: 113
50932951 TATTCCTTTA
* * * * * *
50932961 AGTCATTGAACTAGGTCCTACAAGCCTATTTCCCATGAGTCATGGGTTTTATCCCATATTTTGCA
1 AGTCATTGAACTAAGTCCTATAAGCCTATTTCCCATGAGCCATGGGTGTTATGCCATATTGTGCA
* ** * **
50933026 ATGTTGATGCTAATACCTAACAATGGCTCATCACCAAATGTCATTCTTGT
66 AGGTCAATGCTAATACCTATCAATGGCTCATCACCAAAT-TCATTC-CCT
* * * * * *
50933076 AAGTCATTGAACCAAGTCCTACAAGCCTATTTCCCATGAGCCATGGGTGCTAAGCCACATAGTGC
1 -AGTCATTGAACTAAGTCCTATAAGCCTATTTCCCATGAGCCATGGGTGTTATGCCATATTGTGC
* * * * * ** *
50933141 GAGGTCAATACTAATGCCCA-CTAAT-GTTCATTGCCAACATTTATTCCCT
65 AAGGTCAATGCTAATACCTATC-AATGGCTCATCACCAA-ATTCATTCCCT
* * * *** *
50933190 AGCTCATTGAACTAAGTCCTATAAGCCCATTTCCAATGAGTCATGGGTGTTATGCCATACCATTC
1 AG-TCATTGAACTAAGTCCTATAAGCCTATTTCCCATGAGCCATGGGTGTTATGCCATATTGTGC
* * ** *
50933255 AAGGTCAATGCTAATAGCTATCAATGGTTCATTGCCAGAATACATTCCCAT
65 AAGGTCAATGCTAATACCTATCAATGGCTCATCACCA-AATTCATTCCC-T
* * * * *
50933306 AGTTATTGTACTTAAGTCCTATGAGCCTGTTTCCCATAAGCCATGGGTGTTATGCCATATTGTGC
1 AGTCATTGAAC-TAAGTCCTATAAGCCTATTTCCCATGAGCCATGGGTGTTATGCCATATTGTGC
* * * *
50933371 AAGGTCAATGCTAATACCTATCAATGCCTAATCACCAAATTATATTCCTACG
65 AAGGTCAATGCTAATACCTATCAATGGCTCATCACCAAATT-CATTCC--CT
* * * * * ** * *
50933423 AGTTATTGAACTAAAT-CTACAAGCTTATTTCCAATGAGTAACGGGTGTAATGCCAT
1 AGTCATTGAACTAAGTCCTATAAGCCTATTTCCCATGAGCCATGGGTGTTATGCCAT
50933479 TCCAGAGTAC
Statistics
Matches: 316, Mismatches: 75, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
113 2 0.01
114 69 0.22
115 75 0.24
116 159 0.50
117 10 0.03
118 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (113 bp):
AGTCATTGAACTAAGTCCTATAAGCCTATTTCCCATGAGCCATGGGTGTTATGCCATATTGTGCA
AGGTCAATGCTAATACCTATCAATGGCTCATCACCAAATTCATTCCCT
Found at i:50945433 original size:111 final size:111
Alignment explanation
Indices: 50945239--50945460 Score: 410
Period size: 111 Copynumber: 2.0 Consensus size: 111
50945229 CAATACCATG
*
50945239 CATGTAGTTGTATTGTTGTATAAAAGTTTGTTAATATGCACAGACATTTAGAAAAAGTAGTGTAT
1 CATGTAGTTGTATTGTTGTATAAAAGTTTGTTAATATGCAAAGACATTTAGAAAAAGTAGTGTAT
50945304 GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
66 GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
*
50945350 CATGTAGTTGTATTGTTGTATTAAAGTTTGTTAATAT-CTAAAGACATTTAGAAAAAGTAGTGTA
1 CATGTAGTTGTATTGTTGTATAAAAGTTTGTTAATATGC-AAAGACATTTAGAAAAAGTAGTGTA
50945414 TGTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
65 TGTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
50945461 TACTTCATCA
Statistics
Matches: 108, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
110 1 0.01
111 107 0.99
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (111 bp):
CATGTAGTTGTATTGTTGTATAAAAGTTTGTTAATATGCAAAGACATTTAGAAAAAGTAGTGTAT
GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
Found at i:50946023 original size:20 final size:20
Alignment explanation
Indices: 50945998--50946037 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
50945988 AATATTTTCC
*
50945998 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
50946018 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
50946038 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:50946043 original size:34 final size:35
Alignment explanation
Indices: 50945986--50946052 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
50945976 CAAACACCAG
*
50945986 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
50946021 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
50946053 CATTCTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:50954053 original size:25 final size:25
Alignment explanation
Indices: 50954019--50954069 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
50954009 ATACGTAGAA
50954019 AAACATAGAAAATTTAACCATACCC
1 AAACATAGAAAATTTAACCATACCC
50954044 AAACATAGAAAATTTAACCATACCC
1 AAACATAGAAAATTTAACCATACCC
50954069 A
1 A
50954070 TGTCGTATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.53, C:0.24, G:0.04, T:0.20
Consensus pattern (25 bp):
AAACATAGAAAATTTAACCATACCC
Found at i:50955294 original size:24 final size:23
Alignment explanation
Indices: 50955246--50955295 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
50955236 CTTAATTGCC
50955246 TTTGCTAGAAAATATAACTACTTT
1 TTTGCTAGAAAATAT-ACTACTTT
* *
50955270 TTTGCTAGAAAATCT-CTACGTT
1 TTTGCTAGAAAATATACTACTTT
50955292 TTTG
1 TTTG
50955296 TGGTGCAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.42
24 14 0.58
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (23 bp):
TTTGCTAGAAAATATACTACTTT
Found at i:50977026 original size:28 final size:28
Alignment explanation
Indices: 50976993--50977048 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
50976983 CTTATATTGC
50976993 TCAGTATGGTCCTCTGATATTTTATAAA
1 TCAGTATGGTCCTCTGATATTTTATAAA
50977021 TCAGTATGGTCCTCTGATATTTTATAAA
1 TCAGTATGGTCCTCTGATATTTTATAAA
50977049 GTTCTTCTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (28 bp):
TCAGTATGGTCCTCTGATATTTTATAAA
Found at i:50978337 original size:21 final size:21
Alignment explanation
Indices: 50978293--50978337 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
50978283 AAAAACCACA
*
50978293 AAAAAATATAAAAATCTATTT
1 AAAAAATATAAAAATCTATAT
*
50978314 AAAAAATATTAAAAT-TATGAT
1 AAAAAATATAAAAATCTAT-AT
50978335 AAA
1 AAA
50978338 TATTCGAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAAAATATAAAAATCTATAT
Found at i:51005915 original size:21 final size:23
Alignment explanation
Indices: 51005890--51005932 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
51005880 AATTAAAAAA
*
51005890 AAGTTAATATAT-T-ATAATTAT
1 AAGTTAAAATATGTAATAATTAT
51005911 AAGTTAAAATATGTAATAATTA
1 AAGTTAAAATATGTAATAATTA
51005933 CTTAAAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
22 1 0.05
23 7 0.37
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (23 bp):
AAGTTAAAATATGTAATAATTAT
Found at i:51011488 original size:16 final size:16
Alignment explanation
Indices: 51011467--51011523 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
51011457 TTTGGTTCGC
*
51011467 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
51011483 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
51011499 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
51011515 TGTAATGGA
1 TGTAATGGA
51011524 AAAGCTGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:51011890 original size:14 final size:15
Alignment explanation
Indices: 51011758--51011892 Score: 61
Period size: 15 Copynumber: 8.9 Consensus size: 15
51011748 TTTAAACATA
*
51011758 ATTATTATTAAATAT
1 ATTATAATTAAATAT
*
51011773 ATTTTAATTAAA-AT
1 ATTATAATTAAATAT
*
51011787 A-TATAATTTAATAT
1 ATTATAATTAAATAT
*
51011801 GAATTTACTCAAATCATAATAT
1 --A-TTA-T--AATTA-AATAT
* *
51011823 ATGATACTGTAAA-AT
1 ATTATAAT-TAAATAT
51011838 A-TA-AATTAACATA-
1 ATTATAATTAA-ATAT
*
51011851 ATTATTATTAAATAT
1 ATTATAATTAAATAT
51011866 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
51011880 A-TATAATTTAATA
1 ATTATAATTAAATA
51011893 AAATTCTTAA
Statistics
Matches: 90, Mismatches: 14, Indels: 33
0.66 0.10 0.24
Matches are distributed among these distances:
12 3 0.03
13 21 0.23
14 16 0.18
15 29 0.32
16 5 0.06
17 1 0.01
18 3 0.03
19 3 0.03
20 1 0.01
21 3 0.03
22 5 0.06
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:51011907 original size:44 final size:43
Alignment explanation
Indices: 51011818--51011908 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 43
51011808 CTCAAATCAT
* * *
51011818 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
* * *
51011861 AATATATTATAAT-TAAAATATATAATTTAATAAAATTCTTAATA
1 AATATATGATAATGTAAAATATA-AA-TTAACAAAATTATTAATA
51011905 AATA
1 AATA
51011909 AAATTCTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 9 0.22
43 13 0.32
44 18 0.45
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (43 bp):
AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
Found at i:51011997 original size:15 final size:16
Alignment explanation
Indices: 51011977--51012012 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
51011967 AATAATTAAT
51011977 ATTAA-ATATGATTTA
1 ATTAATATATGATTTA
51011992 ATTAAATATATGATTTA
1 ATT-AATATATGATTTA
51012009 ATTA
1 ATTA
51012013 TAACTAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 3 0.16
16 3 0.16
17 13 0.68
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (16 bp):
ATTAATATATGATTTA
Found at i:51012002 original size:17 final size:20
Alignment explanation
Indices: 51011981--51012026 Score: 71
Period size: 17 Copynumber: 2.5 Consensus size: 20
51011971 ATTAATATTA
51011981 AATATGATTTAATTA-AA-T
1 AATATGATTTAATTATAACT
51011999 -ATATGATTTAATTATAACT
1 AATATGATTTAATTATAACT
51012018 AATATGATT
1 AATATGATT
51012027 ATAGTTTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 14 0.56
18 2 0.08
19 1 0.04
20 8 0.32
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (20 bp):
AATATGATTTAATTATAACT
Found at i:51012143 original size:93 final size:92
Alignment explanation
Indices: 51012033--51012227 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
51012023 GATTATAGTT
* * *
51012033 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
51012096 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
51012126 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
51012191 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
51012218 TATGAATTTA
1 TATGAATTTA
51012228 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:51012411 original size:16 final size:16
Alignment explanation
Indices: 51012387--51012428 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
51012377 TTTGGTTCGC
* *
51012387 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
51012403 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
51012419 TGTAATGGAA
1 TGTAATGGAA
51012429 AAGCTGTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.31
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:51012793 original size:14 final size:15
Alignment explanation
Indices: 51012661--51012795 Score: 61
Period size: 15 Copynumber: 8.9 Consensus size: 15
51012651 TTTAAACATA
*
51012661 ATTATTATTAAATAT
1 ATTATAATTAAATAT
*
51012676 ATTTTAATTAAA-AT
1 ATTATAATTAAATAT
*
51012690 A-TATAATTTAATAT
1 ATTATAATTAAATAT
*
51012704 GAATTTACTCAAATCATAATAT
1 --A-TTA-T--AATTA-AATAT
* *
51012726 ATGATACTGTAAA-AT
1 ATTATAAT-TAAATAT
51012741 A-TA-AATTAACATA-
1 ATTATAATTAA-ATAT
*
51012754 ATTATTATTAAATAT
1 ATTATAATTAAATAT
51012769 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
51012783 A-TATAATTTAATA
1 ATTATAATTAAATA
51012796 AAATTCTTAA
Statistics
Matches: 90, Mismatches: 14, Indels: 33
0.66 0.10 0.24
Matches are distributed among these distances:
12 3 0.03
13 21 0.23
14 16 0.18
15 29 0.32
16 5 0.06
17 1 0.01
18 3 0.03
19 3 0.03
20 1 0.01
21 3 0.03
22 5 0.06
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:51012810 original size:44 final size:43
Alignment explanation
Indices: 51012721--51012811 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 43
51012711 CTCAAATCAT
* * *
51012721 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
* * *
51012764 AATATATTATAAT-TAAAATATATAATTTAATAAAATTCTTAATA
1 AATATATGATAATGTAAAATATA-AA-TTAACAAAATTATTAATA
51012808 AATA
1 AATA
51012812 AAATTCTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 9 0.22
43 13 0.32
44 18 0.45
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (43 bp):
AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
Found at i:51012900 original size:15 final size:16
Alignment explanation
Indices: 51012880--51012915 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
51012870 AATAATTAAT
51012880 ATTAA-ATATGATTTA
1 ATTAATATATGATTTA
51012895 ATTAAATATATGATTTA
1 ATT-AATATATGATTTA
51012912 ATTA
1 ATTA
51012916 TAACTAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 3 0.16
16 3 0.16
17 13 0.68
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (16 bp):
ATTAATATATGATTTA
Found at i:51012905 original size:17 final size:20
Alignment explanation
Indices: 51012884--51012929 Score: 71
Period size: 17 Copynumber: 2.5 Consensus size: 20
51012874 ATTAATATTA
51012884 AATATGATTTAATTA-AA-T
1 AATATGATTTAATTATAACT
51012902 -ATATGATTTAATTATAACT
1 AATATGATTTAATTATAACT
51012921 AATATGATT
1 AATATGATT
51012930 ATAGTTTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 14 0.56
18 2 0.08
19 1 0.04
20 8 0.32
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (20 bp):
AATATGATTTAATTATAACT
Found at i:51013046 original size:93 final size:92
Alignment explanation
Indices: 51012936--51013130 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
51012926 GATTATAGTT
* * *
51012936 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
51012999 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
51013029 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
51013094 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
51013121 TATGAATTTA
1 TATGAATTTA
51013131 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:51013229 original size:903 final size:904
Alignment explanation
Indices: 51011483--51013272 Score: 3573
Period size: 903 Copynumber: 2.0 Consensus size: 904
51011473 GGATTAGAGG
51011483 TGTATTGGATTAGAGGTGTAATGGAATAGAGGTGTAATGGAAAAGCTGTGTAATAGCAAATCAAC
1 TGTATTGGATTAGAGGTGTAATGGAATAGAGGTGTAATGGAAAAGCTGTGTAATAGCAAATCAAC
51011548 TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAATCCTGTGTTTGGTTGAGTGTAATAGA
66 TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAATCCTGTGTTTGGTTGAGTGTAATAGA
51011613 GGTGTAATAGCATAATGAAAAAACTAAAATGACTAGAATACCCTTAGCAGAAATTTGTTTTGGTA
131 GGTGTAATAGCATAATGAAAAAACTAAAATGACTAGAATACCCTTAGCAGAAATTTGTTTTGGTA
51011678 AATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAA
196 AATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAA
51011743 TCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATATGAATTTA
261 TCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATATGAATTTA
51011808 CTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTATAA
326 CTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTATAA
51011873 TTAAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTCTATGAATTTACTCAAATCAT
391 TTAAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTCTATGAATTTACTCAAATCAT
51011938 AATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAATATGATTTAATTAAATATAT
456 AATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAATATGATTTAATTAAATATAT
51012003 GATTTAATTATAACTAATATGATTATAGTTTATGAATTTGTATAATTTAAAATAATAATTATTAC
521 GATTTAATTATAACTAATATGATTATAGTTTATGAATTTGTATAATTTAAAATAATAATTATTAC
51012068 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAAAAATTTTCTTATATGAAT
586 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAAAAATTTTCTTATATGAAT
51012133 TTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCATAAAATTC
651 TTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCATAAAATTC
51012198 TTAATAATAAAATGTTCTTATATGAATTTACTAAAATCAATATATAACTTGAGAATTATATTATG
716 TTAATAATAAAATGTTCTTATATGAATTTACTAAAATCAATATATAACTTGAGAATTATATTATG
51012263 CATAAACATAATTAACTTATATTAAGAAAAGGTTAGATGAAAATGAAATTGTACATTAAAATCCA
781 CATAAACATAATTAACTTATATTAAGAAAAGGTTAGATGAAAATGAAATTGTACATTAAAATCCA
51012328 TATGTTATATAGTTTTACAACATCAAAAAGTTTGAACATTGACAGCACGTTTGGTTCGC
846 TATGTTATATAGTTTTACAACATCAAAAAGTTTGAACATTGACAGCACGTTTGGTTCGC
51012387 TGTATTGGATTAGAGGTGTAATGGAATAGAGGTGTAATGGAAAAGCTGTGTAATAGCAAATCAAC
1 TGTATTGGATTAGAGGTGTAATGGAATAGAGGTGTAATGGAAAAGCTGTGTAATAGCAAATCAAC
51012452 TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAATCCTGTGTTTGGTTGAGTGTAATAGA
66 TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAATCCTGTGTTTGGTTGAGTGTAATAGA
51012517 GGTGTAATAGCATAATGAAAAAACTAAAATGACTAGAATACCCTTAGCAGAAA-TTGTTTTGGTA
131 GGTGTAATAGCATAATGAAAAAACTAAAATGACTAGAATACCCTTAGCAGAAATTTGTTTTGGTA
51012581 AATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAA
196 AATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAA
51012646 TCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATATGAATTTA
261 TCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATATGAATTTA
51012711 CTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTATAA
326 CTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTATAA
51012776 TTAAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTCTATGAATTTACTCAAATCAT
391 TTAAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTCTATGAATTTACTCAAATCAT
51012841 AATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAATATGATTTAATTAAATATAT
456 AATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAATATGATTTAATTAAATATAT
51012906 GATTTAATTATAACTAATATGATTATAGTTTATGAATTTGTATAATTTAAAATAATAATTATTAC
521 GATTTAATTATAACTAATATGATTATAGTTTATGAATTTGTATAATTTAAAATAATAATTATTAC
51012971 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAAAAATTTTCTTATATGAAT
586 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAAAAATTTTCTTATATGAAT
51013036 TTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCATAAAATTC
651 TTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCATAAAATTC
51013101 TTAATAATAAAATGTTCTTATATGAATTTACTAAAATCAATATATAACTTGAGAATTATATTATG
716 TTAATAATAAAATGTTCTTATATGAATTTACTAAAATCAATATATAACTTGAGAATTATATTATG
51013166 CATAAACATAATTAACTTATATTAAGAAAAGGTTAGATGAAAATGAAATTGTACATTAAAATCCA
781 CATAAACATAATTAACTTATATTAAGAAAAGGTTAGATGAAAATGAAATTGTACATTAAAATCCA
51013231 TATGTTATATAGTTTTACAACATCAAAAAGTTTGAACATTGA
846 TATGTTATATAGTTTTACAACATCAAAAAGTTTGAACATTGA
51013273 TATTTAATGG
Statistics
Matches: 886, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
903 703 0.79
904 183 0.21
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.39
Consensus pattern (904 bp):
TGTATTGGATTAGAGGTGTAATGGAATAGAGGTGTAATGGAAAAGCTGTGTAATAGCAAATCAAC
TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAATCCTGTGTTTGGTTGAGTGTAATAGA
GGTGTAATAGCATAATGAAAAAACTAAAATGACTAGAATACCCTTAGCAGAAATTTGTTTTGGTA
AATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAA
TCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATATGAATTTA
CTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTATAA
TTAAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTCTATGAATTTACTCAAATCAT
AATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAATATGATTTAATTAAATATAT
GATTTAATTATAACTAATATGATTATAGTTTATGAATTTGTATAATTTAAAATAATAATTATTAC
ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAAAAATTTTCTTATATGAAT
TTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCATAAAATTC
TTAATAATAAAATGTTCTTATATGAATTTACTAAAATCAATATATAACTTGAGAATTATATTATG
CATAAACATAATTAACTTATATTAAGAAAAGGTTAGATGAAAATGAAATTGTACATTAAAATCCA
TATGTTATATAGTTTTACAACATCAAAAAGTTTGAACATTGACAGCACGTTTGGTTCGC
Found at i:51016833 original size:15 final size:15
Alignment explanation
Indices: 51016813--51016843 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51016803 ATATTATGTA
51016813 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
51016828 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
51016843 T
1 T
51016844 TGATGGTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.35
Consensus pattern (15 bp):
TAATTGAGGTAAAAT
Found at i:51022994 original size:21 final size:21
Alignment explanation
Indices: 51022970--51023009 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
51022960 TTTTAAATTT
51022970 AAAAAATAT-TTATAAAAATCC
1 AAAAAATATATT-TAAAAATCC
*
51022991 AAAATATATATTTAAAAAT
1 AAAAAATATATTTAAAAAT
51023010 ATATAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAAATATATTTAAAAATCC
Found at i:51023162 original size:23 final size:23
Alignment explanation
Indices: 51023136--51023183 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
51023126 TAAAAGTATC
51023136 TTAAATTTTTTTATTATTTTACT
1 TTAAATTTTTTTATTATTTTACT
51023159 TTAAATTTTTTTATTATTTTACT
1 TTAAATTTTTTTATTATTTTACT
51023182 TT
1 TT
51023184 GAAAAAGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (23 bp):
TTAAATTTTTTTATTATTTTACT
Found at i:51030237 original size:170 final size:170
Alignment explanation
Indices: 51029955--51030265 Score: 396
Period size: 170 Copynumber: 1.8 Consensus size: 170
51029945 TTAGGTCTTT
51029955 CCTCTGAAAAGCTGGTACCGAATCCTCATTTGAACATAAATGCTTTAGGTGGCTGATTTATCAAA
1 CCTCTGAAAAGCTGGTACCGAATCCTCATTTGAACATAAATGCTTTAGGTGGCTGATTTATCAAA
** ** *
51030020 CCAATTAAGCTATCCAGACGCAACATTTATTTCCTTCTCAGTATATATAAACTTTTATTTTTGTT
66 CCAACCAAGCTATCCAGACGCAACATTTATACCCTTCTCAGTATATAT-AACTTTTATTCTTGTT
*
51030085 T-ACTATAATGTTGCTCTGTACCCCCCAATTGTTTTTTTCC
130 TAACCATAATGTTGCTCTGTACCCCCCAATTGTTTTTTTCC
* ** *
51030125 CCTCTGAAAAGCTGGTCCCGAATCCTCATTTGGGCATGAAATATGGTTTAGGT-G-T-ATTTATC
1 CCTCTGAAAAGCTGGTACCGAATCCTCATTTGAACAT--AA-ATGCTTTAGGTGGCTGATTTATC
* * ** * * * *
51030187 AAACCAACCAAGTTTTCCTTACGGAACTTTTATACCCTTTTCCGTATATATAACTTTTATTCTTG
63 AAACCAACCAAGCTATCCAGACGCAACATTTATACCCTTCTCAGTATATATAACTTTTATTCTTG
51030252 TTTAACCATAATGT
128 TTTAACCATAATGT
51030266 CGTCTTTATT
Statistics
Matches: 119, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
169 16 0.13
170 89 0.75
171 1 0.01
172 3 0.03
173 10 0.08
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (170 bp):
CCTCTGAAAAGCTGGTACCGAATCCTCATTTGAACATAAATGCTTTAGGTGGCTGATTTATCAAA
CCAACCAAGCTATCCAGACGCAACATTTATACCCTTCTCAGTATATATAACTTTTATTCTTGTTT
AACCATAATGTTGCTCTGTACCCCCCAATTGTTTTTTTCC
Found at i:51031043 original size:28 final size:27
Alignment explanation
Indices: 51030981--51031043 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 27
51030971 TTTAAGTAAT
*
51030981 TAATAAAATTATTTTTAAAAATTGATGA
1 TAAT-AAATTATTTTTAAAAATTAATGA
51031009 TATATAAATTATTTTTAAAAAGTTAAAT-A
1 TA-ATAAATTATTTTTAAAAA-TT-AATGA
51031038 TAATAA
1 TAATAA
51031044 TATATAAGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
28 22 0.71
29 7 0.23
30 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (27 bp):
TAATAAATTATTTTTAAAAATTAATGA
Found at i:51032888 original size:28 final size:29
Alignment explanation
Indices: 51032852--51032906 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
51032842 TTTAAGATTC
*
51032852 AGGATTCA-GGATTTAGGATTGGGGGTTCG
1 AGGATTCAGGGA-TTAGGATTCGGGGTTCG
*
51032881 AGGA-TCAGGGATTAGGGTTCGGGGTT
1 AGGATTCAGGGATTAGGATTCGGGGTT
51032907 TGGAGTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.20, C:0.07, G:0.44, T:0.29
Consensus pattern (29 bp):
AGGATTCAGGGATTAGGATTCGGGGTTCG
Done.