Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 19 of 168
Found at i:5088149 original size:30 final size:30
Alignment explanation
Indices: 5088119--5088175 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
5088109 CCACCCAACT
5088119 TTTTGAAAAATTACAATTTTG-CCCCAAAC
1 TTTTGAAAAATTACAATTTTGTCCCCAAAC
* * *
5088148 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGTCCCCAA
5088176 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGTCCCCAAAC
Found at i:5089549 original size:18 final size:19
Alignment explanation
Indices: 5089509--5089548 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
5089499 GCAAATGTTC
5089509 TTTCATTCTTTACGATTTT
1 TTTCATTCTTTACGATTTT
5089528 TTTCATTCTTT-CAGATTTT
1 TTTCATTCTTTAC-GATTTT
5089547 TT
1 TT
5089549 CTGCCAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.15, C:0.15, G:0.05, T:0.65
Consensus pattern (19 bp):
TTTCATTCTTTACGATTTT
Found at i:5090528 original size:7 final size:7
Alignment explanation
Indices: 5090503--5090544 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
5090493 GTGATGTGAA
5090503 AAAAATG
1 AAAAATG
5090510 AAAAGATG
1 AAAA-ATG
5090518 -AAAATG
1 AAAAATG
5090524 AAAAATG
1 AAAAATG
5090531 AAAAA-G
1 AAAAATG
5090537 TAAAAATG
1 -AAAAATG
5090545 GAGAGGTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
6 4 0.13
7 23 0.74
8 4 0.13
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:5090542 original size:21 final size:21
Alignment explanation
Indices: 5090503--5090544 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
5090493 GTGATGTGAA
*
5090503 AAAAATGAAAAGATGAAAATG
1 AAAAATGAAAAGATAAAAATG
5090524 AAAAATGAAAA-AGTAAAAATG
1 AAAAATGAAAAGA-TAAAAATG
5090545 GAGAGGTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (21 bp):
AAAAATGAAAAGATAAAAATG
Found at i:5091637 original size:22 final size:23
Alignment explanation
Indices: 5091606--5091650 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
5091596 CGTTAAAATA
*
5091606 TCATTTAAATGACATTC-TACAT
1 TCATTCAAATGACATTCATACAT
*
5091628 TCATTCAAATGTCATTCATACAT
1 TCATTCAAATGACATTCATACAT
5091651 GTCTAGTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.40
Consensus pattern (23 bp):
TCATTCAAATGACATTCATACAT
Found at i:5091941 original size:89 final size:89
Alignment explanation
Indices: 5091839--5092612 Score: 1221
Period size: 89 Copynumber: 8.7 Consensus size: 89
5091829 TATATTGGTA
* *
5091839 GTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCCCATACTGGTGGCGGAGTAGATCGAAGAAAG
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
*
5091904 CAGATATTGTCTTCATGTACTGGC
66 CAGATCTTGTCTTCATGTACTGGC
*
5091928 GTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
5091993 CAGATCTTGTCTTCATGTACTGGC
66 CAGATCTTGTCTTCATGTACTGGC
* *
5092017 ATGAAGTAGATCAAATATA-TCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
1 GTGAAGTAGATCAAAGATACT-AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
*
5092081 GCAGATATTGTCTTCATGTACTGGC
65 GCAGATCTTGTCTTCATGTACTGGC
* * *
5092106 GTGAAGTAAATCAAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAG
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
5092171 CAGATCTTGTCTTCATGTACTGGC
66 CAGATCTTGTCTTCATGTACTGGC
* *
5092195 GTGAAGTAGATCAAATATA-TCAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAA
1 GTGAAGTAGATCAAAGATACT-AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
*
5092259 GCAAATCTTGTCTTCATGTACTGGC
65 GCAGATCTTGTCTTCATGTACTGGC
* * * *
5092284 GTGAAGTAGATCAAATATACTAGATCTTGTCTTCCCACACTGGTGGCAAAGTAGATCGAAAAAAA
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCG-AAGAAA
* * *
5092349 GTAGATATTATCTTCATGTACTGGC
65 GCAGATCTTGTCTTCATGTACTGGC
* * * *
5092374 GTGAAGTAGATCAAAGATGCCAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCAAAGAAAG
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
*
5092439 CAGATCTTGTCTTCATGTACCGGC
66 CAGATCTTGTCTTCATGTACTGGC
5092463 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
5092528 CAGATCTTGTCTTCATGTACTGGC
66 CAGATCTTGTCTTCATGTACTGGC
* * * ** *
5092552 GTGAAGTAGATCAAAGAAAGTAGATCTTATCTTCCCATA-TATTGGCGAAATAGATCGAAGA
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
5092613 TACAAGTCTT
Statistics
Matches: 629, Mismatches: 51, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
88 19 0.03
89 532 0.85
90 78 0.12
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (89 bp):
GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
CAGATCTTGTCTTCATGTACTGGC
Found at i:5093247 original size:17 final size:17
Alignment explanation
Indices: 5093225--5093281 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
5093215 CGGAGCTAGC
5093225 CTCCTCCACGCATGCCG
1 CTCCTCCACGCATGCCG
* *
5093242 CTCCTCTACGCATGCCA
1 CTCCTCCACGCATGCCG
* * **
5093259 CACCTCCGCAAATGCCG
1 CTCCTCCACGCATGCCG
5093276 CTCCTC
1 CTCCTC
5093282 AAGCACGTAC
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.16, C:0.51, G:0.14, T:0.19
Consensus pattern (17 bp):
CTCCTCCACGCATGCCG
Found at i:5094454 original size:18 final size:19
Alignment explanation
Indices: 5094431--5094525 Score: 71
Period size: 18 Copynumber: 5.3 Consensus size: 19
5094421 ATCCTTATTT
5094431 TACTTTCTTATT-TTTATA
1 TACTTTCTTATTATTTATA
* *
5094449 TACTTT-ATATTATATATA
1 TACTTTCTTATTATTTATA
5094467 TACTTATACATT-TTATTT-TA
1 TACTT-T-C-TTATTATTTATA
5094487 T--TTTCTTATT-TTTATA
1 TACTTTCTTATTATTTATA
* *
5094503 TACTTT-ATATTATATATA
1 TACTTTCTTATTATTTATA
5094521 TACTT
1 TACTT
5094526 ATATATTTTA
Statistics
Matches: 61, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
15 5 0.08
16 6 0.10
17 9 0.15
18 31 0.51
19 1 0.02
20 3 0.05
21 5 0.08
22 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.62
Consensus pattern (19 bp):
TACTTTCTTATTATTTATA
Found at i:5094461 original size:14 final size:14
Alignment explanation
Indices: 5094444--5094518 Score: 50
Period size: 14 Copynumber: 5.5 Consensus size: 14
5094434 TTTCTTATTT
5094444 TTATATACTTTATA
1 TTATATACTTTATA
5094458 TTATATA---TATA
1 TTATATACTTTATA
* * *
5094469 CTTATACATTTTATT
1 -TTATATACTTTATA
* * *
5094484 TTATTTTC-TTATTT
1 TTATATACTTTA-TA
5094498 TTATATACTTTATA
1 TTATATACTTTATA
5094512 TTATATA
1 TTATATA
5094519 TATACTTATA
Statistics
Matches: 46, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
11 4 0.09
12 6 0.13
13 3 0.07
14 27 0.59
15 6 0.13
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (14 bp):
TTATATACTTTATA
Found at i:5094534 original size:54 final size:54
Alignment explanation
Indices: 5094425--5094539 Score: 212
Period size: 54 Copynumber: 2.1 Consensus size: 54
5094415 CCTTATATCC
5094425 TTATTTTACTTTCTTATTTTTATATACTTTATATTATATATATACTTATACATT
1 TTATTTTACTTTCTTATTTTTATATACTTTATATTATATATATACTTATACATT
* *
5094479 TTATTTTATTTTCTTATTTTTATATACTTTATATTATATATATACTTATATATT
1 TTATTTTACTTTCTTATTTTTATATACTTTATATTATATATATACTTATACATT
5094533 TTATTTT
1 TTATTTT
5094540 GTAAATATAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (54 bp):
TTATTTTACTTTCTTATTTTTATATACTTTATATTATATATATACTTATACATT
Found at i:5094535 original size:26 final size:26
Alignment explanation
Indices: 5094444--5094536 Score: 64
Period size: 26 Copynumber: 3.5 Consensus size: 26
5094434 TTTCTTATTT
*
5094444 TTATATACTTTATATTATATATATAC
1 TTATATATTTTATATTATATATATAC
* * * * *
5094470 TTATACATTTTATTTTAT-TTTCTTAT
1 TTATATATTTTATATTATATAT-ATAC
* *
5094496 TTTTATATACTT-TATATTATATATATAC
1 TTATATAT-TTTATAT--TATATATATAC
5094524 TTATATATTTTAT
1 TTATATATTTTAT
5094537 TTTGTAAATA
Statistics
Matches: 46, Mismatches: 15, Indels: 10
0.65 0.21 0.14
Matches are distributed among these distances:
25 2 0.04
26 25 0.54
27 4 0.09
28 13 0.28
29 2 0.04
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (26 bp):
TTATATATTTTATATTATATATATAC
Found at i:5094558 original size:54 final size:54
Alignment explanation
Indices: 5094446--5094559 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 54
5094436 TCTTATTTTT
** * ****
5094446 ATATACTTTATATTATATATATACTTATACATTTTATTTTATTTTCTTATTTTT
1 ATATACTTTATATTATATATATACTTATACATTTTATTTTATAATCATATACAC
* *
5094500 ATATACTTTATATTATATATATACTTATATATTTTATTTTGTAAAT-ATATACAC
1 ATATACTTTATATTATATATATACTTATACATTTTATTTTAT-AATCATATACAC
5094554 ATATAC
1 ATATAC
5094560 ATTTTTTTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 49 0.98
55 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.56
Consensus pattern (54 bp):
ATATACTTTATATTATATATATACTTATACATTTTATTTTATAATCATATACAC
Found at i:5095569 original size:19 final size:19
Alignment explanation
Indices: 5095534--5095582 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
5095524 ATATTTTATT
*
5095534 TTTTATA-TTTGTAATAAA
1 TTTTATATTTTTTAATAAA
* *
5095552 TTTTATATTTTTTTATAAC
1 TTTTATATTTTTTAATAAA
*
5095571 TTTTACATTTTT
1 TTTTATATTTTT
5095583 AAAAATATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 7 0.27
19 19 0.73
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTATATTTTTTAATAAA
Found at i:5096945 original size:16 final size:16
Alignment explanation
Indices: 5096916--5096949 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
5096906 TTAGGTTAAA
5096916 AATAGTATAAAATTAT
1 AATAGTATAAAATTAT
5096932 AATA-TATAACAATTAT
1 AATAGTATAA-AATTAT
5096948 AA
1 AA
5096950 AAAATTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (16 bp):
AATAGTATAAAATTAT
Found at i:5097015 original size:18 final size:18
Alignment explanation
Indices: 5096994--5097035 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
5096984 TTCTTATAAA
5096994 TAAAATA-TTTTTTTATCT
1 TAAAATAGTTTTTTT-TCT
*
5097012 TAAAA-AGTTTTTTTTTT
1 TAAAATAGTTTTTTTTCT
5097029 TAAAATA
1 TAAAATA
5097036 AGTCATGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (18 bp):
TAAAATAGTTTTTTTTCT
Found at i:5098464 original size:144 final size:144
Alignment explanation
Indices: 5098269--5098558 Score: 474
Period size: 144 Copynumber: 2.0 Consensus size: 144
5098259 AGTCAATGCG
* * *
5098269 GAATTGTTGGTCCAGTCCCTTCTGCTTTGGGTCAATTAATCAATCTTCAATCTCTGATCCTTTCG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAATCTCCAATCTCTGATCCTTTCG
*
5098334 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTT-GA
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGACATTTGAGAAATTTGACTTATTTGGA
* *
5098398 GTCTCTCCAGCAATA
131 -TCTCTACAACAATA
* *
5098413 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAATCTCCAATCTCTGATCCTTTCG
* *
5098478 GGGAACCAGATCAATGGATCTATCCCATTAGAAATTGGACATTTGAGGAATTTGACTTATTTGGA
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGACATTTGAGAAATTTGACTTATTTGGA
5098543 TCTCTACAACAATA
131 TCTCTACAACAATA
5098557 GA
1 GA
5098559 CTTGGTTTAA
Statistics
Matches: 135, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
144 133 0.99
145 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (144 bp):
GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAATCTCCAATCTCTGATCCTTTCG
GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGACATTTGAGAAATTTGACTTATTTGGA
TCTCTACAACAATA
Found at i:5102064 original size:46 final size:47
Alignment explanation
Indices: 5101993--5102667 Score: 599
Period size: 46 Copynumber: 14.0 Consensus size: 47
5101983 GCGAGGGTTG
* * * * *
5101993 TAAAGCTAAAGGTAGCAAATTTTATTTCCCTGGCATCGCAGT-AGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTGAGAT
* * *
5102039 TAAAGCTGAAGGTAGCAAATCTTATTTCCCTAGCGTCGCAGT-AGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTGAGAT
* * *
5102085 TAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-G---AGAT
* * * *
5102136 TAAAGCCGAAGGCAGCAAATCTTATTTCCCTAGCGTCACAGT-AGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTGAGAT
* * * * *
5102182 TAAAGCTGAAGGCAGCGAATCTCATTTCCTTAGTGTTGCAGTGGAACAGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-G---AGAT
* *
5102233 TAAAGCTGAAGGCCGCGAATCTTATTTCCCTCGCGTCGCAGT-AGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTGAGAT
* * * *
5102279 TAAAGCTAAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-G---AGAT
* *
5102330 TAAAGCTGAAGGTAGCGAATCTTATTTCCCTTGCGTCGCAGT-AGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTGAGAT
* * * * *
5102376 TAAAGCTGAAGGCAGTGAATCTCAATTCCTTGGCGTTGCAGTGGAACAGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-G---AGAT
* * * * *
5102427 TAAAGCTGAAGACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAACATAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-G---AGAT
* * * * *
5102478 TAAAGTTGAAGGCAGCTAATCTTATTTCCTTGGTGTTGCAGT-AGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTGAGAT
* * * * * * *
5102524 TAAAGTTAAAGGTAGAGGATCTTATTTCCTTGGCGTTGCAGTGGAACAGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-G---AGAT
*
5102575 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGTGTCGCAGT-AGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTGAGAT
* * *
5102621 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCATCACAGTGAGAT
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTGAGAT
5102668 GGTTTGAAGT
Statistics
Matches: 524, Mismatches: 79, Indels: 51
0.80 0.12 0.08
Matches are distributed among these distances:
46 277 0.53
47 4 0.01
51 243 0.46
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (47 bp):
TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTGAGAT
Found at i:5102154 original size:97 final size:97
Alignment explanation
Indices: 5102035--5102654 Score: 756
Period size: 97 Copynumber: 6.4 Consensus size: 97
5102025 GCATCGCAGT
* *
5102035 AGATTAAAGCTGAAGGTAGCAAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
5102100 CGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
66 CGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
* * *
5102132 AGATTAAAGCCGAAGGCAGCAAATCTTATTTCCCTAGCGTCACAGTAGATTAAAGCTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
* *
5102197 CGAATCTCATTTCCTTAGTGTTGCAGTGGAAC
66 CGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
* * *
5102229 AGATTAAAGCTGAAGGCCGCGAATCTTATTTCCCTCGCGTCGCAGTAGATTAAAGCTAAAGGCAG
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
5102294 CGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
66 CGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
* *
5102326 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTTGCGTCGCAGTAGATTAAAGCTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
* *
5102391 TGAATCTCAATTCCTTGGCGTTGCAGTGGAAC
66 CGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
* * * * * * *
5102423 AGATTAAAGCTGAAGACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAACATATTAAAGTTGAA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCGCAGT-----AGATTAAAGCTGAA
* * *
5102488 GGCAGCTAATCTTATTTCCTTGGTGTTGCAGT-----
61 GGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
* * * * * * * *
5102520 AGATTAAAGTTAAAGGTAGAGGATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCGCAGT-----AGATTAAAGCTGAA
* * * *
5102585 GGCAGCGAATCTTATTTCCCTGGTGTCGCAGT-----
61 GGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
5102617 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGC
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGC
5102655 ATCACAGTGA
Statistics
Matches: 467, Mismatches: 51, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
97 428 0.92
102 39 0.08
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (97 bp):
AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
CGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
Found at i:5102336 original size:148 final size:139
Alignment explanation
Indices: 5101993--5102654 Score: 653
Period size: 148 Copynumber: 4.6 Consensus size: 139
5101983 GCGAGGGTTG
* * * * * * *
5101993 TAAAGCTAAAGGTAGCAAATTTTATTTCCCTGGCATCGCAGTAGATTAAAGCTGAAGGTAGCAAA
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
*
5102058 TCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTTG
66 TCTTATTTCCTTAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTTG
5102123 CAGTGGAACAGAT
131 CAGT---A-AGAT
* * * *
5102136 TAAAGCCGAAGGCAGCAAATCTTATTTCCCTAGCGTCACAGTAGATTAAAGCTGAAGGCAGCGAA
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * * * * * *
5102201 TCTCATTTCCTTAGTGTTGCAGTGGAACAGATTAAAGCTGAAGGCCGCGAATCTTATTTCCCTCG
66 TCTTATTTCCTTAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGG
*
5102266 CGTCGCAGT-AGAT
126 CGTTGCAGTAAGAT
* * * * *
5102279 TAAAGCTAAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGTA
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-----AGATTAAAGCTGAAGGCA
* *
5102344 GCGAATCTTATTTCCCTT-GCGTCGCAGTAGATTAAAGCTGAAGGCAGTGAATCTCAATTCCTTG
61 GCGAATCTTATTT-CCTTAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTG
5102408 GCGTTGCAGTGGAACAGAT
125 GCGTTGCAGT---A-AGAT
* * * * * *
5102427 TAAAGCTGAAGACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAACATATTAAAGTTGAAGGCA
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-----AGATTAAAGCTGAAGGCA
* * * * * * * * * *
5102492 GCTAATCTTATTTCCTTGGTGTTGCAGTAGATTAAAGTTAAAGGTAGAGGATCTTATTTCCTTGG
61 GCGAATCTTATTTCCTTAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGG
5102557 CGTTGCAGTGGAACAGAT
126 CGTTGCAGT---A-AGAT
*
5102575 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGTGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
1 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
*
5102640 TCTTATTTCCCTAGC
66 TCTTATTTCCTTAGC
5102655 ATCACAGTGA
Statistics
Matches: 437, Mismatches: 65, Indels: 34
0.82 0.12 0.06
Matches are distributed among these distances:
143 184 0.42
147 4 0.01
148 245 0.56
149 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (139 bp):
TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
TCTTATTTCCTTAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTTG
CAGTAAGAT
Found at i:5102801 original size:44 final size:44
Alignment explanation
Indices: 5102689--5102852 Score: 114
Period size: 44 Copynumber: 3.7 Consensus size: 44
5102679 ATCATGGCAG
* * * * * * *
5102689 ATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCACAA
1 ATCTTATTTCCTTGAAGTTACAGTGAAGCAGATTGAAGACACAA
* ** ** * * * * *
5102733 AACTTATCCCCCCGACGTTGCAGTGAGGCAGGTTGAAGAGACAA
1 ATCTTATTTCCTTGAAGTTACAGTGAAGCAGATTGAAGACACAA
* *
5102777 ATCTTATCTTCC-TGAAGTTACAGTGAAGCAGATTGAAGCCACCA
1 ATCTTAT-TTCCTTGAAGTTACAGTGAAGCAGATTGAAGACACAA
* * *
5102821 GTCTTATTTCCTTGAAGTTGCAGTGGAGCAGA
1 ATCTTATTTCCTTGAAGTTACAGTGAAGCAGA
5102853 CTAAAACCAC
Statistics
Matches: 93, Mismatches: 25, Indels: 4
0.76 0.20 0.03
Matches are distributed among these distances:
43 4 0.04
44 87 0.94
45 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (44 bp):
ATCTTATTTCCTTGAAGTTACAGTGAAGCAGATTGAAGACACAA
Found at i:5109467 original size:20 final size:18
Alignment explanation
Indices: 5109432--5109472 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
5109422 AAAAATGATA
5109432 AAAAAAAGAAAAAAAAGG
1 AAAAAAAGAAAAAAAAGG
*
5109450 AAAAAAGGAAAAGGAAAAGG
1 AAAAAAAGAAAA--AAAAGG
5109470 AAA
1 AAA
5109473 GGCCAAAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
20 9 0.45
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (18 bp):
AAAAAAAGAAAAAAAAGG
Found at i:5114929 original size:46 final size:46
Alignment explanation
Indices: 5114670--5115242 Score: 374
Period size: 46 Copynumber: 11.9 Consensus size: 46
5114660 TTTAGTGGAA
* * * * *
5114670 TAGATTAAAGCTAAAGGCAACAAATCTTATTTCCCTGACGTCGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGTAG
* * * * * ** *
5114716 AAGATTAAAGCTGAAGGCACCAAATCTCATTTCCATGATGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGTAG
* * * * * *
5114762 TGGAACAGATTAAAGCTAAAGCCAACGAATTTTATTTCCTTGG-GATCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG-TCGTAG
* * * * * * *
5114813 TAGATTAAACCTGAAGGTAGTGAATCTCATTTCCTTGGCTTGTAGTGGAA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC--GTCGT--AG
* * *
5114863 TAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTAGCGTCGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGTAG
* * * * *
5114909 TAGATTAAAGCTGAAGGCAGCGAATCTCATTTTCTTGGCATTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGTAG
* * * * *
5114955 TGGAACAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCTAGTGTCGCAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGTAG
* * * *
5115006 TAGATTAAAGCTGAATGCAGCGGATCTTATTTCCTTGGCGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGTAG
* * * *
5115052 TGGAACAAATTAAAGCTGAAGGCAGTGAATCTTATTTTCCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGTAG
* * * *
5115103 TAGATTAAAGCTAAAGGCAGCGAATCTCATTTCCTTGGCGTTACAGTGGAA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG-T-C-GT--AG
* * * * * * **
5115154 CAGATTAAAGCTGGAGCCAACGAATCTTATTTCTCTAGCGTCACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGTAG
*
5115200 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCG
5115243 CAGTGGGATG
Statistics
Matches: 400, Mismatches: 101, Indels: 52
0.72 0.18 0.09
Matches are distributed among these distances:
46 215 0.54
47 1 0.00
48 7 0.02
49 3 0.01
50 34 0.09
51 140 0.35
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (46 bp):
TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGTAG
Found at i:5115248 original size:97 final size:97
Alignment explanation
Indices: 5114641--5115233 Score: 733
Period size: 97 Copynumber: 6.1 Consensus size: 97
5114631 TAAAGCCCAT
* * * * *
5114641 AATCTCATTTCTTTGGCGTTTTAGTGGAATAGATTAAAGCTAAAGGCAACAAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAACGAATCTTATTTCCCT
* * *
5114706 -GACGTCGCAGAAGATTAAAGCTGAAGGCACCA
66 AG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* ** * * *
5114738 AATCTCATTTCCATGATGTTGTAGTGGAACAGATTAAAGCTAAAGCCAACGAATTTTATTT-CCT
1 AATCTCATTTCCTTGGCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAACGAATCTTATTTCCCT
* * * * *
5114802 TGGGATCGCAGTAGATTAAACCTGAAGGTAGTG
66 AGCG-TCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * *
5114835 AATCTCATTTCCTTGGC-TTGTAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAACGAATCTTATTTCCCT
*
5114899 AGCGTCGTAGTAGATTAAAGCTGAAGGCAGCG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * *
5114931 AATCTCATTTTCTTGGCATTGTAGTGGAACAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAACGAATCTTATTTCCCT
* * *
5114996 AGTGTCGCAATAGATTAAAGCTGAATGCAGCG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * ** *
5115028 GATCTTATTTCCTTGGCGTTGTAGTGGAACAAATTAAAGCTGAAGGCAGTGAATCTTATTTTCCT
1 AATCTCATTTCCTTGGCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAACGAATCTTATTTCCCT
* *
5115093 GGCGTCGCAGTAGATTAAAGCTAAAGGCAGCG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
** * * *
5115125 AATCTCATTTCCTTGGCGTTACAGTGGAACAGATTAAAGCTGGAGCCAACGAATCTTATTTCTCT
1 AATCTCATTTCCTTGGCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAACGAATCTTATTTCCCT
*
5115190 AGCGTCACAGTAGATTAAAGCTGAAGGCAGCG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
*
5115222 AATCTTATTTCC
1 AATCTCATTTCC
5115234 CTAGCGTCGC
Statistics
Matches: 423, Mismatches: 69, Indels: 8
0.85 0.14 0.02
Matches are distributed among these distances:
96 80 0.19
97 343 0.81
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (97 bp):
AATCTCATTTCCTTGGCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAACGAATCTTATTTCCCT
AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
Found at i:5115535 original size:46 final size:45
Alignment explanation
Indices: 5115482--5115821 Score: 284
Period size: 46 Copynumber: 7.2 Consensus size: 45
5115472 GTAGTGGAAC
* *
5115482 AGATTAAAGCTAAAGGCAGCAAATCTTATTTCCCTTGCGTCGCAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTT-CCTTGCGTCGCAGT
* * *
5115528 AGATTAAAGCTAAAGGCAGCGAATCTTATTTTCCTGGCGACGCAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTTA-TTTCCTTGCGTCGCAGT
* ** * * * *
5115574 AGATTAAAGCTGAAGGCAACGAATCTCCTTTTCTTGGTGTTGTAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTT-GCGTCGCAGT
* * * * *
5115620 GAAACAGATTAATGTTGAGGGCAGCAAATCTTATTTACTTGGCGTCGCAGT
1 -----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTT-GCGTCGCAGT
* * * *
5115671 AGATTAAAGTTGAAGGCAGCGAATCTCATTTCCTTGGCGTTGTAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTT-GCGTCGCAGT
* * * *
5115717 GGAATGGATTAACGCTAAAGGCAGCGAATCTGATTTCTCTGGCGTCGCAGT
1 ---A--GATTAAAGCTGAAGGCAGCGAATCTTATTTC-CTTGCGTCGCAGT
* *
5115768 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCACAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTT-CCTTGCGTCGCAGT
5115814 AGATTAAA
1 AGATTAAA
5115822 TCAGAAGGAA
Statistics
Matches: 237, Mismatches: 43, Indels: 28
0.77 0.14 0.09
Matches are distributed among these distances:
45 5 0.02
46 154 0.65
47 4 0.02
48 1 0.00
49 1 0.00
51 70 0.30
52 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (45 bp):
AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGCGTCGCAGT
Found at i:5115599 original size:143 final size:144
Alignment explanation
Indices: 5115452--5115821 Score: 382
Period size: 143 Copynumber: 2.6 Consensus size: 144
5115442 TAAAGCCGAT
* *
5115452 AATCTTATTTCTTTTGCGTTGTAGTGGAACAGATTAAAGCTAAAGGCAGCAAATCTTATTTCCCT
1 AATCTTATTTCTTTGGCGTTGTAGT-GAACAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCT
*
5115517 TGCGTCGCAGTAGATTAAAGCTAAAGGCAGCGAATCTTATTTTCC-TGGCGACGCAGT-A-GATT
65 TGCGTCGCAGTAGATTAAAGCTAAAGGCAGCGAATCTCA-TTTCCTTGGCGACGCAGTGAGGATT
*
5115579 AAAGCTGAAGGCAACG
129 AAAGCTAAAGGCAACG
* * * * *
5115595 AATCTCCT-TTTC-TTGGTGTTGTAGTGAAACAGATTAATGTTGAGGGCAGCAAATCTTATTT-A
1 AATCT--TATTTCTTTGGCGTTGTAGTG-AACAGATTAAAGCTGAAGGCAGCAAATCTTATTTCC
* * ** *
5115657 CTTGGCGTCGCAGTAGATTAAAGTTGAAGGCAGCGAATCTCATTTCCTTGGCGTTGTAGTGGAAT
63 CTT-GCGTCGCAGTAGATTAAAGCTAAAGGCAGCGAATCTCATTTCCTTGGCGACGCAGT-G-A-
* *
5115722 GGATTAACGCTAAAGGCAGCG
124 GGATTAAAGCTAAAGGCAACG
* * * * * *
5115743 AATCTGATTTCTCTGGCGTCGCAGT----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTA
1 AATCTTATTTCTTTGGCGTTGTAGTGAACAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTT
*
5115804 GCGTCACAGTAGATTAAA
66 GCGTCGCAGTAGATTAAA
5115822 TCAGAAGGAA
Statistics
Matches: 186, Mismatches: 28, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
142 9 0.05
143 134 0.72
144 6 0.03
145 1 0.01
146 1 0.01
147 4 0.02
148 31 0.17
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (144 bp):
AATCTTATTTCTTTGGCGTTGTAGTGAACAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTT
GCGTCGCAGTAGATTAAAGCTAAAGGCAGCGAATCTCATTTCCTTGGCGACGCAGTGAGGATTAA
AGCTAAAGGCAACG
Found at i:5115643 original size:97 final size:97
Alignment explanation
Indices: 5115528--5115800 Score: 359
Period size: 97 Copynumber: 2.8 Consensus size: 97
5115518 GCGTCGCAGT
* * *
5115528 AGATTAAAGCTAAAGGCAGCGAATCTTATTTTCCTGGCGACGCAGTAGATTAAAGCTGAAGGCAA
1 AGATTAACGCTAAAGGCAGCGAATCTTATTTTCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
* * *
5115593 CGAATCTCCTTTTCTTGGTGTTGTAGTGAAAC
66 CGAATCTCATTTCCTTGGCGTTGTAGTGAAAC
* * * * * * * *
5115625 AGATTAATGTTGAGGGCAGCAAATCTTATTTACTTGGCGTCGCAGTAGATTAAAGTTGAAGGCAG
1 AGATTAACGCTAAAGGCAGCGAATCTTATTTTCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
* *
5115690 CGAATCTCATTTCCTTGGCGTTGTAGTGGAAT
66 CGAATCTCATTTCCTTGGCGTTGTAGTGAAAC
* *
5115722 GGATTAACGCTAAAGGCAGCGAATCTGA-TTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCA
1 AGATTAACGCTAAAGGCAGCGAATCTTATTTTC-CTGGCGTCGCAGTAGATTAAAGCTGAAGGCA
*
5115786 GCGAATCTTATTTCC
65 GCGAATCTCATTTCC
5115801 CTAGCGTCAC
Statistics
Matches: 149, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
96 3 0.02
97 146 0.98
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (97 bp):
AGATTAACGCTAAAGGCAGCGAATCTTATTTTCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
CGAATCTCATTTCCTTGGCGTTGTAGTGAAAC
Found at i:5116166 original size:46 final size:46
Alignment explanation
Indices: 5116072--5116168 Score: 124
Period size: 46 Copynumber: 2.1 Consensus size: 46
5116062 TGTAGTGGAA
* * * * *
5116072 TAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTGGGATCGGAG
1 TAGATGAAAACTGAAGGCAACAAATCTTATTTCCTAGCGATCGCAG
*
5116118 TAGATGAAAACTGAAGGCATCAAATCTTATTTTCCTAGCG-TCGCAG
1 TAGATGAAAACTGAAGGCAACAAATCTTA-TTTCCTAGCGATCGCAG
5116164 TAGAT
1 TAGAT
5116169 TAAAGCTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
46 36 0.82
47 8 0.18
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (46 bp):
TAGATGAAAACTGAAGGCAACAAATCTTATTTCCTAGCGATCGCAG
Found at i:5116190 original size:46 final size:46
Alignment explanation
Indices: 5116072--5125540 Score: 2740
Period size: 51 Copynumber: 195.0 Consensus size: 46
5116062 TGTAGTGGAA
* * * *
5116072 TAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTGG-GATCGGAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG-TCGCAG
* * * * * *
5116118 TAGATGAAAACTGAAGGCATCAAATCTTATTTTCCTAGCGTCGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5116164 TAGATTAAAGCTAAAGGTAGCGAATCTCATTTCCCTCGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** * *
5116210 TGGAACAGATTCAAGTTGAAGGTAGTAAATCTTATTTCCCTAGCGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5116261 TAGATTAAAGCTGAAGGCAGTGAATCTCATTTCCTTGGCGTTGCAGTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* * * *
5116310 AATAGATTAAAGCTGAAGGTAGCGAATCTTATTTCGCTGGGGTCACAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5116358 TAGATTAAAGCTG-A---A-TGAATCTCATTTCCTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5116399 TGGAACAGATTAAAGTTGAAGGTAACGAATCTTATTT-CCTGGGGTCGAAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** *
5116449 TAGATTAAAGCAGAAGGAAGCGAATCTTATTTCTTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5116495 TGGAACAGATTAAATCTGAAGGCAGCGAATCTTATTTCCCTGGAGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5116546 TAGATTAAAGCTAAAGGCAGCAAATCTTATTTCCCTGCCGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5116592 TAAATTAAAGTTGAAGGCAGCGAATCTCATTTCTTTGGCATTGGCGTCGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTC-----C-CTGGCGTCGCAG
* *
5116644 TAGATTAAAGCTGAAGGCAGCGAATCCTATTTCCCTGGCGTGGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5116690 TAGATTAAATCAGAAGGACA-CGAGTCTTA-TTCCCTCAGCGTTGCAG
1 TAGATTAAAGCTGAAGG-CAGCGAATCTTATTTCCCT-GGCGTCGCAG
* * * * *
5116736 TGGAACAGATTAAAGTTGAAGCCAGCGAATTTTATTTCCCCGGCGTCGCTG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** *
5116787 TAGATTAAACCTGAAGGCCGCGAATCTTATTTCCTTTTCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* *
5116833 TAGAACAGATTAAAGCTGAA-GCAGTGAATCTTATTTCCCTGGCGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * *
5116883 TAGATTAAAACTGAAGGCAGTGAATCTTATTTCGATTGCGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* ** *
5116929 TGGAACAGATTAAAGCTGAAGGTAGTAAATCTTATTTCCC-GAGCGTCACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTG-GCGTCGCAG
* * * *
5116980 CAGATTAAAGCTGAAGGCAGCAAATCTCT-TTTCCCTGGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * ** * *
5117026 TGGAACTGATTAAAGCTGAATGTAGTAAATCTTATTTCCCTGGCATCGTAG
1 T---A--GATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5117077 TAGATTAAAGCTGAAGGCGGTGAATCTTATTTCCTTAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5117123 TGGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACCTGGAGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5117174 TAGATTAAA-CTTGAAGGCAGCGAATCTCATTTACCTGGAGTCGTAG
1 TAGATTAAAGC-TGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5117220 TAGATTAAA-CTTGAAGGCAGCGAATCTCATTTCCCTGGTGTTGCAG
1 TAGATTAAAGC-TGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5117266 TAGATTAAAGCTGAAGGAAGCAAATCTTA-TTCCTTTGGCATCACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-CTGGCGTCGCAG
* * ** * *
5117312 TGGAACAAATTAAAGCTGAAGGCAGCGAATCTCATTTCCCTAACGTCGTAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5117363 TAGATTAAAGCTGAAGGCATCGAATCTTATTT-CCTAAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT-GGCGTCGCAG
* * *
5117409 TGGAACAGATTAAACCTGAAGCCAGTGAATCTTATTTCCCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * **************
5117460 TAGGTTAAAGCTGAATGCAGCGAATCTCATTTNNNNNNNNNNNNNNNNNNNNN
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTT-------CCCTGGCGTCGCAG
**********************************************
5117513 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
*********************************** * *
5117559 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGTCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGG-CGTCGCAG
* * * * * *
5117606 TGGAACAAATTAAGGCTAAAGGCAGTGAATCTTATATCCCTAGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5117657 TAAGCA--AAAGTTGAAGGCAGAGAATCTTATTTCCTTGGCGTTGCAG
1 T-AG-ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * *
5117703 TGGAACATATTAAAGTTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5117754 TGGAACAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCCTGGCGTCGCAG
* * * * * * * *
5117805 TAAATTAAAGTTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAATGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGC-A--G
* * * * * * * * *
5117854 AACAGGTTAAAGCTGAAGGCGGCGAATCTCATCTCCTTGCCGTTGTAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
** *
5117902 TGGAACAGATTAAAGCTGAAGGCAAG-GAATCTTATTTCCCTGGCACCGCAA
1 T-----AGATTAAAGCTGAAGGC-AGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * *
5117953 TAGACTAAAGGTAAAGGCGGTGAATCTTACTTCCTTGGCGTTTCAGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG--TC-GCAG
*
5118002 AATAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT-GCTGTTGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC-GTCGCAG
* * * * *
5118050 TAGAACAGAGTAAAGCAGAAGGCAACAAATCTTATTTCCCTGACGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5118101 TAGACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5118147 TGGAACAGATTAAAGCTGAAAGCAGCGAAT-TCCATTTCCTTGGCATTGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * * * *
5118198 TGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATCGCAT
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5118249 TAGGTGAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5118295 TTGAACTGATTAAAGTTGAAGGCAGCAAATCTTATTTCGCTGGCGTCAG-AG
1 -T--A--GATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTC-GCAG
* * * * * *
5118346 TAGATTAAAACTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* *** * * * *
5118392 TGGAACATATTAAAGCTGAAGGCAATAAATATTATTTCCTTGGCATTGTAGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC---GTCGCAG
* * *
5118446 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCATCGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** *
5118494 TAGATTCAAGCTGAAGGTAGCGAATCTTATTTCGTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** * * * *
5118540 TGGAACAGATTATAGTTGACGGCAGCGAATCCCATTTTCTTGGCATTGCAGTGG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* ** * * ** * *
5118594 ATCAAATTAAAATTGAAGGTAGC--AT-TTCTTT-GGTGTTGCAGT-GGAA
1 -T-AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTG--GC-GTCGCAG
* * * *
5118640 CAGATTAAAGCTGAAGGCAGGGAATCTTATTTCCCTGTCGTCACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * *
5118686 TTGATTAAAGTTGAAGGCAGCAAATTTTATTTCCTTGGAGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5118732 TAGAACAGATTCAAGCGGAAGGCACCAAATCTTATTTCCCTGACGTCGCAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5118783 TAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * **
5118829 TAGAACAGATTAAAGCTGACGACAGCGAAT-TACATTTCCTTGGCATTACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * * * * * * *
5118880 TGGAACAAATTAAAGCTAAAAGAAGCAAATCTTATTTCCTTGGCGTCGTAT
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5118931 TAGATTAAAACTGAAGGCAGCAAATCTCATTTCCTTGGCGTAC-TAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGT-CGCAG
* * * * * * *
5118977 TGGA--AAAGCAGAAGGCAGCAAATCTTATTTCTCTAGCATCGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5119021 TAGATTAAAGCTGAAGGCAACAAATCTCATTTCCCTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5119067 TGGAACAGATTAAAGCTGAA-GCAGTGAATTTTATTTCCCTGGCGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * *
5119117 TAGATTAAAACTGAAGGCAGTGAATCTTATTTCGATTGCGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * *
5119163 TGGAACAAATTAAAGCTGAAGGTAGTAAATCTTATTTCCCTAGCGTCACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5119214 CAGATTAAAGCTGAAGGCAGCAAATCTCT-TTTCCCTGGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * ** * *
5119260 TGGAACAGATTAAAGCTGAATGTAGTAAATCTTATTTCCCTGGCATCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * **
5119311 TAGATTAAAGCTGAAGGCGGTGAATCTTATTTCCTTAGCGTTACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5119357 TGGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACCTGGAGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * ** *
5119408 TAGATTAAA-CTTGACGGCAGCGAATCTCATTTTCCGGGTATTGCAG
1 TAGATTAAAGC-TGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5119454 TAGATTAAAGCTGAAGGAAGCGAATCTTA-TTCCTTTGGCATCACAGTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-CTGGCGTCGCA---G
* * *
5119503 AATAGATTAAAGCTGAAGGCATCGAATCTTATTT-CCTAAGCGTTGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT-GGCGTCGCAG
* * * *
5119551 TGGAACAGATTAAACCTGAAGCCAGTGAATCTTATTTCCCTAGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5119602 TAGGTTAAAGCTGAATGCAGCGAATCTCATTTTCTTGGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5119648 TGGAACAAATTAAGGCTAAAGGCAGTGAATCTTATATCCCTAGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5119699 TAAGCA--AAAGTTGAAGGCAGAGAATCTTATTTCCTTGGCGTTGCAG
1 T-AG-ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * *
5119745 TGGAACATATTAAAGTTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5119796 TGGAACAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCCTGGCGTCGCAG
* * * * * * * *
5119847 TAAATTAAAGTTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAATGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGC-A--G
* * * * * * * * *
5119896 AACAGGTTAAAGCTGAAGGCGGCGAATCTCATCTCCTTGCCGTTGTAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
** *
5119944 TGGAACAGATTAAAGCTGAAGGCAAG-GAATCTTATTTCCCTGGCACCGCAA
1 T-----AGATTAAAGCTGAAGGC-AGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5119995 TAGACTAAAGCTAAAGACGGTGAATCTTATTTCCTTGGCGTTTCAGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG--TC-GCAG
* * *
5120044 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGCCGTTGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5120092 TAGAACAGAGTAAAGCAGAAGGCAACAAATCTTATTTCCCTGACGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5120143 TAGACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGTTGCAGTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* * * * *
5120192 AATAGATTAAAGCTGAAAGCAGCGAAT-TCCATTTCCTTGGCATTGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
** * * * *
5120240 -AGGAACAAATTAAAGCTGAAGGGTGCAAATCTTATTTCCTTGGCATCGCAT
1 TA-G-----ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5120291 TAGATGAAGGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** *
5120337 TTGAACTGATTAAAGTTGAAGACAGCAAATCTTATTTCGTTGCCGTCAG-AG
1 -T--A--GATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTC-GCAG
* * * * * *
5120388 TAGATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* *** * *
5120434 TGGAACATATTAAAGCTGAAGGCAATAAATCTTATTTCCTTGGCGTTGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5120485 TTGAACTGATTAAAGTTGAAGGCAGCAAATCTTATTTCGCTGGCGTCAG-AG
1 -T--A--GATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTC-GCAG
* * * * * *
5120536 TAGATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* *** * * * *
5120582 TGGAACATATTAAAGCTGAAGGCAATAAATCTTATTTCCTTGACATTGTAGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC---GTCGCAG
* * *
5120636 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCATCGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * ** *
5120684 TATATTCAAGCTGAAGGTAGCGAATCTTTTTTCGTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * * *
5120730 TGGAACAGATTATAGCTGACGGCAGCGAATCCCATTTTCTTGGCATTGCAGTGG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* ** * * * * *
5120784 ATCAAATTAAAATTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAT
1 -T-AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** * *
5120832 TAGATTAAAGCTGAAGGTAGCAAATCTCATTTCTTTGGTGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
*
5120878 TGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * * *
5120929 TTGATTAAAGTTGAAGGCAACAAATTTTATTTCCTTGGAGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5120975 TAGAACAGATTCAAGCAT-AAGGCACCAAATCTTATTTCCCTGACGTCGCAA
1 T-----AGATTAAAGC-TGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5121026 TAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * **
5121072 TAGAACAGATTAAAGCTGACGACAGCGAAT-TACATTTCCTTGGCATTACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * * * * * * *
5121123 TGGAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTTCTTGGCGTCGTAT
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5121174 TAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTAGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5121220 TGGA--AAAGCAGAAGGCAGCAAATCTTATTTCTCTAGCGTCGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5121264 TAGATTAAAGCTGAAGGCAACAAACCTCATTTCCCTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
** * *
5121310 TGGAACAGATTAAAGCTGAA-GCAATGAATCTTATTTCCCCGGCGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** * * *
5121360 TAGATTAAAACAGAAGGCAGTGAATCTTATTTCGATTGCGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * *
5121406 TGGAACAAATTAAAGCTGAAGGTAGTAAATCTTATTTCCCTAGCGTCACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5121457 CAGATTAAAGCTGAAGACAGCAAATCTCT-TTTCCCTGGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * ** * * *
5121503 TGGAACAGATTAAAGCTGAATGTAGTAAATTTTATTTCCCTGGCATCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5121554 TAGATTAAAGCTGAAGGCGGTGAATCTTATTTCCTTAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5121600 TGGAACAGATTAAAGCTAAAGGCAACGAATCTTATTTACCTAGAGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5121651 TAGATTAAA-CTTGAAGGCAGCGAATCTCATTTCCCTGGTGTTGCAG
1 TAGATTAAAGC-TGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5121697 TAGATTAAAGCTGAAGGAAGCGAATCTTA-TTCCTTTGGCATCACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-CTGGCGTCGCAG
* * ** * *
5121743 TGGAACAAATTAAAGCTGAAGGCAGCGAATCTCATTTCCCTAACGTCGTAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5121794 TAGATTAAAGCTGAAGGCATCGAATCTTATTT-CCTAAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT-GGCGTCGCAG
* * **
5121840 TGGAACAGATTAAACCTGAAGCCAGTAAATCTTATTTCCCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * *
5121891 TAGGTTAAAGCTGAATGCAGCGAATCTCATTTTCTTGGCATTGGAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5121937 TGGAACAGATTAACGCTAAAGGCAGTGAATCTTATATCCCTAGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5121988 TA-AGCTAAAGTTGAAGGCAGAGAATCTTATTTCCTTGGCGTTGCAG
1 TAGA-TTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * *
5122034 TGGAACATATTAAAGTTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5122085 TGGAACAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCCTGGCGTCGCAG
* * * * * * *
5122136 TAAATTAAAGCTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAATGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGC-A--G
* * * * * * * * *
5122185 AACAGGTTAAAGCTGAAGGCGGCGAATCTCATCTCCTTGCCGTTGTAGTGG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* ** * *
5122236 AATAGATTAAAGTTGAAGGCAATGAATCTTATTTCCCTGGC-ACAGCAA
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTC-GCAG
* * * * * * *
5122284 TAGACTAAAGGTAAAGGCGGTGAATCTTATTTCCTTGGCGTTTCAGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG--TC-GCAG
* * ** * * *
5122333 AACAGATTAAAGCTGAAGGCAGTGAATCTTATTTTTTCTGTCATTGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTA-TTTCCCTGGCGTCGCAG
* * * * * * *
5122382 TAGAACAGAGTAAAAGCAGAAGGCAACAAATCTTGTTTCCCTGACGTTGCAG
1 T-----AGA-TTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5122434 TAGACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGTCGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5122480 TGGAACAGATTAAAGCTGAAAGCAGCGAAT-TCCATTTCCTTGGCATTGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * * * *
5122531 TGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATCGCAT
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * *
5122582 TAGGTGAAAGCTAAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5122628 TTGAACTGATTAAAGTTGAAGGCAGCAAATCTTATTTCGCTGGCGTTAG-AG
1 -T--A--GATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG-TCGCAG
* * * * * *
5122679 TAGATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* *** * * *
5122725 TGGAACATATTAAAGCTGAAGGCAATAAATCTTATTTCCTTGGCATTGTAGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC---GTCGCAG
* * * *
5122779 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCATCGTAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** *
5122827 TAGATTCAAGCTGAAGGTAGCGAATCTTATTTCGTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * * * *
5122873 TGGAACAGATTATAGCTGACGGCAGCGAATCCCATTTTCTTGACATTGCAGTGG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* ** * * * *
5122927 ATCAAATTAAAATTGAAGGTAGCAAATCTTATTTCCTTGGCGTCGCAT
1 -T-AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** * *
5122975 TAGATTAAAGCTGAAGGTAGCAAATCTCATTTCTTTGGTGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
*
5123021 TGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * * *
5123072 TTGATTAATGTTGAAGGCAGCAAATTTTATTTCCTTGGAGTTGTAGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT-G-G-CGTCGCAG
* * * * *
5123121 AATAGATTAAAGCAGAAGGCACCAAATCTTATTTCCCTGACGTCGCAA
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5123169 TAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * **
5123215 TAGAACAGGTTAAAGCTGACGACAGCGAAT-TACATTTCCTTGGCATTACAG
1 TAG---A--TTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * * * * * *
5123266 TGGAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTCCTTGGCGTCGTAT
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5123317 TAGATTAAAGTTGAAGGCAGCGAATCTCATTTCCTTGGCGTAGTAA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5123363 TGGA--AAAGCAGAAGGCAGCAAATCTTATTTCTCTAGCGTCGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5123407 TAGATTAAACCTGAAGGCAACAAATCTCATTTCCCTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *** *
5123453 TGGAACAGATTAAAGTTGAAGCCAATAAATCTTATTTCCCTGGCATCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5123504 CAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTAGTGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5123550 TGGAACAGATTAAAGCTAAAGGTAGCGAATCTTATTTCTCT-GCTGGCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC-GTCGCAG
* * * * * *
5123601 TAAATTAAAGCTGAAGGAAGTGAATCTTATTTCCTTGGCGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5123647 TGGAACAGATTAAAGTTAAAGGCAACAAATCTTATTTCCCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * ** * * *
5123698 TAGATTCAAGTTGAAGGCAGTGAATCTCATTTCATTTGCATTGCAGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC-GT-C-GCAG
* * *
5123747 AATAGATTAAAGCTGAATGCAGCAAATCTTATTTCCCTGGCATCGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5123795 TAGATTAAAGATGAAGGCAGCGAGTCTTATTTCCTTAGCGTTGTAGTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* * *
5123844 AATAGATTAAAGCAGAAGGCAGTGAATCTTATTTCCCTAGCGTCGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *** **
5123892 TAGGTTAAAGCTGAAGCCAGAGAATCTCATTTTTTTGTAGTCGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
** * * * *
5123938 TGGAACAGATTAAAGCTGGCGGTAACAAATCTTATTTCCCTAGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * *
5123989 TAGATTAAAGCAGGAGGCAACAAAT-TTCATTTCCCTAGCATTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTT-ATTTCCCTGGCGTCGCAG
* * ** * *
5124035 TGGAACAGAATAAAGCTGAAGGTAGTAAATATTATTTCCCTAGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * ** *
5124086 TAGATTAAAGCTGAAGGTAACGAATCTCATCTCCTTGGTATTGCAGCGGAA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGG-CGT-C-GC--AG
* * * *
5124137 CAGATTAAAACTGAAGGCAGCAAACCTTATTTCCCTGGCGTCGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5124183 TAGACTAAAGATAAAGCCAGTGAATCTTATTTCCCTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * *
5124229 TGGAACAGATTAAAGCTGATGACAGCGAATCTCCTTTCCTTGGCGTTGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * ** * *
5124280 TGGAACAAATTAAAGCTGAAGGCAACAAATCTTATTTCCTTAACGTCACAT
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * *
5124331 TAGATTAAAGCTAAAGGTAGCAAATCTCATTTCCTTAGTGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5124377 TGGAACAGATTAAAG-TAGGAGGCAACAAATCTTATTTCTCTAGCGTCGCAG
1 T-----AGATTAAAGCT-GAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5124428 TAGATTAAAGCTAAAGGCAG-GAAATATCATTTCCCTGGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCG-AATCTTATTTCCCTGGCGTCGCAG
* * * ** * *
5124474 TGGAACAAATTAAAGTTAAAGGCAGTAAATTTTATTTCCCTGGCATCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5124525 TAGATTAAAGCTGCACGTAGCAAATCTTATTTCCTTGGTGTTGCAGTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* *
5124574 AATAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCTGGCATCGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5124622 TAGATTAAAGCTGAAGGCAGTGAATCTTATTTCATTTCCGTTGCAGT-GGAA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTC----CC-TGGC-GTCGCAG
* * * * * *
5124673 TAGATTAAAGCTAAAGGCAGCGAATCTCATTTCCATTGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * **
5124719 TGGAAGAAATTAAAGCTGACGGCAGCAAATCTTTTTTCCCTAGCGTCGCTC
1 T---AG--ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
** * * * *
5124770 TAGATTAAATTTAAAGGCATCGAATCTCATTTCCCTGGCGTTGCACTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* * * * * * * *
5124819 AACATATTAAAGCTGAAAGAAG-TAATCTTATTTTCCTGACGTCACAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5124866 TAGATTAAAGCTGAAGGCAGCGAATCTCATTTTCTTGGCATTCG-AG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC-GTCGCAG
* * *
5124912 TGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTACCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5124963 TAGATTAAAGTTGAAAGCGGTGAATCTTATTTCTCTGGCTTCACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** * * *
5125009 TAGATTAAAGTTGAAGGCAGTGAATCTCATTTCTTTGGCATTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
** *
5125055 TGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCATTGACGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * **** *
5125106 TAGATTAAAGCTAAAGGAAACGAATCTTATTTTCTTAATTTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * **
5125152 TAGAACAAATTAAAGTTGAAGCCAACAAATATTATTTCTCTGTCGTCTTAG
1 TAG-----ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * *
5125203 TAGATTAAAACTAAAGGCAGCGAATCACATTTCCTTGGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* *
5125249 TGGAACAGATTAACA-CTGAAGGCAGCGAATCTTATTTCCCTAGCATCGCAG
1 T-----AGATTAA-AGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5125300 TAGACTAAAGCTGAAGGCGGAGAATGTTATTTCCATGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* ** * *
5125346 TGGAACAGATTAAAGCTGAAGGCAGTGAATCTTATTTCCCTTACATCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5125397 TAAATTAAAGTTGAAGGCAGTGAATCTTACTTT--CTGGGCAAT-ACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTA-TTTCCCT-GGC-GTCGCAG
* *
5125443 TGGAACAGTTTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5125494 TAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
5125540 T
1 T
5125541 GGGATGGTTT
Statistics
Matches: 7001, Mismatches: 1835, Indels: 1174
0.70 0.18 0.12
Matches are distributed among these distances:
41 20 0.00
42 1 0.00
43 1 0.00
44 119 0.02
45 126 0.02
46 2999 0.43
47 51 0.01
48 53 0.01
49 49 0.01
50 143 0.02
51 3288 0.47
52 109 0.02
53 20 0.00
54 18 0.00
55 3 0.00
56 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (46 bp):
TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
Found at i:5116191 original size:143 final size:142
Alignment explanation
Indices: 5116043--5117491 Score: 491
Period size: 143 Copynumber: 10.1 Consensus size: 142
5116033 TAAAGCCAAT
* * *
5116043 AATCTCATTTCTTTAGCGTTGTAGTGGAATAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTT
1 AATCTCATTTCTTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCTT
* * *
5116108 GGGATCGGAGTAGATGAAAACTGAAGGCATCAAATCTTATTTTCCTAGCGTCGCAGTAGATTAAA
66 GGGATCGGAGTAGATTAAAGCTGAAGGCATCAAATCTTA-TTTCCTGGCGTCGCAGTAGATTAAA
5116173 GCTAAAGGTAGCG
130 GCTAAAGGTAGCG
** * * * * * *
5116186 AATCTCATTTCCCTCGCGTTGCAGTGGAACAGATTCAAGTTGAAGGTAGTAAATCTTATTTCCCT
1 AATCTCATTTCTTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTT-CCT
* * * * * *
5116251 AGCG-TCGTAGTAGATTAAAGCTGAAGGCAGT-GAATCTCATTTCCTTGGCGTTGCAGTGGAATA
65 TGGGATCGGAGTAGATTAAAGCTGAAGGCA-TCAAATCTTATTTCC-TGGCGTCGCA---G--TA
*
5116314 GATTAAAGCTGAAGGTAGCG
123 GATTAAAGCTAAAGGTAGCG
* ** * * * * *
5116334 AATCTTATTTCGCTGG-GGT-CA---CAGTAGATTAAAGCTGAA---TG--AATCTCATTTCCTT
1 AATCTCATTTCTTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCTT
* ** * * * * * *
5116389 GGCGTTGCAGTGGAACAGATTAAAGTTGAAGGTAACGAATCTTATTTCCTGGGGTCGAAGTAGAT
66 GG-GAT-C---GGAGTAGATTAAAGCTGAAGGCATCAAATCTTATTTCCTGGCGTCGCAGTAGAT
*
5116454 TAAAGC-AGAAGGAAGCG
126 TAAAGCTA-AAGGTAGCG
* * * * *
5116471 AATCTTATTTCTTTGGCGTTGCAGTGGAACAGATTAAATCTGAAGGCAGCGAATCTTATTTCCCT
1 AATCTCATTTCTTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCTT
* * * * * * *
5116536 -GGAGTCGTAGTAGATTAAAGCTAAAGGCAGCAAATCTTATTTCCCTGCCGTTGTAGTAAATTAA
66 GGGA-TCGGAGTAGATTAAAGCTGAAGGCATCAAATCTTATTT-CCTGGCGTCGCAGTAGATTAA
* * *
5116600 AGTTGAAGGCAGCG
129 AGCTAAAGGTAGCG
* * * * *
5116614 AATCTCATTTCTTTGGCATTGGC-GTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCCTATTTCC
1 AATCTCATTTCTTTGGCGTT-GCAGT-GGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCC
* * * * * * * *
5116678 CTGGCG-T-GGCAGTAGATTAAATCAGAAGGACA-CGAGTCTTATTCCCTCAGCGTTGCAGTGGA
64 TTGG-GATCGG-AGTAGATTAAAGCTGAAGG-CATCAAATCTTATTTCCT-GGCGTCGCAGT---
* * **
5116740 ACAGATTAAAGTTGAAGCCAGCG
122 --AGATTAAAGCTAAAGGTAGCG
* * *** * * * *
5116763 AATTTTATTTCCCCGGCGTCGC--T-G--TAGATTAAACCTGAAGGCCGCGAATCTTATTTCCTT
1 AATCTCATTTCTTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCC-T
** * ** * *
5116823 TTCGTTGCAGTAGAACAGATTAAAGCTGAA-GCAGT-GAATCTTATTTCCCTGGCGTCGTAGTAG
65 TGGGAT-C-G--GAGTAGATTAAAGCTGAAGGCA-TCAAATCTTATTT-CCTGGCGTCGCAGTAG
* * * *
5116886 ATTAAAACTGAAGGCAGTG
124 ATTAAAGCTAAAGGTAGCG
* * * * * *
5116905 AATCTTATTTCGATT-GCGTTGTAGTGGAACAGATTAAAGCTGAAGGTAGTAAATCTTATTTCC-
1 AATCTCATTTC-TTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCT
* ** * * * *
5116968 CGAGCG-TCACAGCAGATTAAAGCTGAAGGCAGCAAATCTCT-TTTCCCTGGCATTGCAGTGGAA
65 TG-G-GATCGGAGTAGATTAAAGCTGAAGGCATCAAATCT-TATTT-CCTGGCGTCGCAGT---A
* * **
5117031 CTGATTAAAGCTGAATGTAGTA
123 --GATTAAAGCTAAAGGTAGCG
* ** * * * **
5117053 AATCTTATTTCCCTGGC-AT-C-GT--AGTAGATTAAAGCTGAAGGCGGTGAATCTTATTTCCTT
1 AATCTCATTTCTTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCTT
** * * * * *
5117113 AGCGTTGCAGT-GGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACCTGGAGTCGTAGTAG
66 -G-G--G-A-TCGGAGTAGATTAAAGCTGAAGGCATCAAATCTTATTT-CCTGGCGTCGCAGTAG
* *
5117177 ATTAAA-CTTGAAGGCAGCG
124 ATTAAAGC-TAAAGGTAGCG
* * * * *
5117196 AATCTCATTTAC-CTGGAG-T-C-GT--AGTAGATTAAA-CTTGAAGGCAGCGAATCTCATTTCC
1 AATCTCATTT-CTTTGGCGTTGCAGTGGAATAGATTAAAGC-TGAAGGCAGCAAATCTTATTTCC
* * * * * * *
5117254 CTGGTG-TTGCAGTAGATTAAAGCTGAAGGAAGCAAATCTTA-TTCCTTTGGCATCACAGTGGAA
64 TTGG-GATCGGAGTAGATTAAAGCTGAAGGCATCAAATCTTATTTCC--TGGCGTCGCAGT----
* * *
5117317 CAAATTAAAGCTGAAGGCAGCG
122 -AGATTAAAGCTAAAGGTAGCG
** ** * *
5117339 AATCTCATTTCCCTAACG-T-C-GT--AATAGATTAAAGCTGAAGGCATCGAATCTTATTTCCTA
1 AATCTCATTTCTTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCT-
* ** * * *
5117399 AGCGTTGCAGT-GGAACAGATTAAACCTGAAGCCAGT-GAATCTTATTTCCCTGGCGTCGCAGTA
65 TG-G--G-A-TCGGAGTAGATTAAAGCTGAAGGCA-TCAAATCTTATTT-CCTGGCGTCGCAGTA
* * * *
5117462 GGTTAAAGCTGAATGCAGCG
123 GATTAAAGCTAAAGGTAGCG
5117482 AATCTCATTT
1 AATCTCATTT
5117492 NNNNNNNNNN
Statistics
Matches: 998, Mismatches: 209, Indels: 198
0.71 0.15 0.14
Matches are distributed among these distances:
136 2 0.00
137 40 0.04
138 47 0.05
139 4 0.00
140 4 0.00
141 1 0.00
142 106 0.11
143 423 0.42
144 85 0.09
145 14 0.01
146 13 0.01
147 66 0.07
148 154 0.15
149 37 0.04
150 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (142 bp):
AATCTCATTTCTTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCTT
GGGATCGGAGTAGATTAAAGCTGAAGGCATCAAATCTTATTTCCTGGCGTCGCAGTAGATTAAAG
CTAAAGGTAGCG
Found at i:5116232 original size:51 final size:51
Alignment explanation
Indices: 5116165--5117460 Score: 676
Period size: 46 Copynumber: 26.9 Consensus size: 51
5116155 GCGTCGCAGT
* * *
5116165 AGATTAAAGCTAAAGGTAGCGAATCTCATTTCCCTCGCGTTGCAGTGGAAC
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * ** * **
5116216 AGATTCAAGTTGAAGGTAGTAAATCTTATTTCCCTAGCG-T-C-GT--AGT
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * * * *
5116262 AGATTAAAGCTGAAGGCAGTGAATCTCATTTCCTTGGCGTTGCAGTGGAAT
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * **
5116313 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCGCTGGGGTCACAGT-----
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* *
5116359 AGATTAAAGCTGAA--T---GAATCTCATTTCCTTGGCGTTGCAGTGGAAC
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * * * *
5116405 AGATTAAAGTTGAAGGTAACGAATCTTATTT-CCTGGGGTCGAAGT-----
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * **
5116450 AGATTAAAGCAGAAGGAAGCGAATCTTATTTCTTTGGCGTTGCAGTGGAAC
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * * **
5116501 AGATTAAATCTGAAGGCAGCGAATCTTATTTCCCTGGAG-T-C-GT--AGT
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * * * *
5116547 AGATTAAAGCTAAAGGCAGCAAATCTTATTTCCCTGCCGTTGTAGT---A-
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * * ** * * **
5116594 A-ATTAAAGTTGAAGGCAGCGAATCTCATTTCTTTGGCATTGGC-GTCGCAGT
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTT-GCAGT-GGAAC
* * *
5116645 AGATTAAAGCTGAAGGCAGCGAATCCTATTTCCCTGGCGTGGCAGT-----
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * * * *
5116691 AGATTAAATCAGAAGG-ACACGAGTCTTA-TTCCCTCAGCGTTGCAGTGGAAC
1 AGATTAAAGCTGAAGGTA-GCGAATCTTATTTCCCT-GGCGTTGCAGTGGAAC
* ** * * * *
5116742 AGATTAAAGTTGAAGCCAGCGAATTTTATTTCCCCGGCGTCGC--T-G--T
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* ** * ** *
5116788 AGATTAAACCTGAAGGCCGCGAATCTTATTTCCTTTTCGTTGCAGTAGAAC
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * **
5116839 AGATTAAAGCTGAA-GCAGTGAATCTTATTTCCCTGGCG-T-C-GT--AGT
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * * ** * *
5116884 AGATTAAAACTGAAGGCAGTGAATCTTATTTCGATTGCGTTGTAGTGGAAC
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
** * *
5116935 AGATTAAAGCTGAAGGTAGTAAATCTTATTTCCC-GAGCG-T-CA---CAGC
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTG-GCGTTGCAGTGGAAC
* * *
5116981 AGATTAAAGCTGAAGGCAGCAAATCTCT-TTTCCCTGGCATTGCAGTGGAAC
1 AGATTAAAGCTGAAGGTAGCGAATCT-TATTTCCCTGGCGTTGCAGTGGAAC
* * ** * **
5117032 TGATTAAAGCTGAATGTAGTAAATCTTATTTCCCTGGC-AT-C-GT--AGT
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
** * * *
5117078 AGATTAAAGCTGAAGGCGGTGAATCTTATTTCCTTAGCGTTGCAGTGGAAC
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * * * **
5117129 AGATTAAAGCTAAAGGCAGCGAATCTTATTTACCTGGAG-T-C-GT--AGT
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * * * **
5117175 AGATTAAA-CTTGAAGGCAGCGAATCTCATTTACCTGGAG-T-C-GT--AGT
1 AGATTAAAGC-TGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * *
5117221 AGATTAAA-CTTGAAGGCAGCGAATCTCATTTCCCTGGTGTTGCAGT-----
1 AGATTAAAGC-TGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * * * **
5117267 AGATTAAAGCTGAAGGAAGCAAATCTTA-TTCCTTTGGCATCACAGTGGAAC
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCC-CTGGCGTTGCAGTGGAAC
* * * ** *
5117318 AAATTAAAGCTGAAGGCAGCGAATCTCATTTCCCTAACG-T-C-GT--AAT
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * *
5117364 AGATTAAAGCTGAAGGCATCGAATCTTATTT-CCTAAGCGTTGCAGTGGAAC
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCT-GGCGTTGCAGTGGAAC
* ** * *
5117415 AGATTAAACCTGAAGCCAGTGAATCTTATTTCCCTGGCGTCGCAGT
1 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGT
5117461 AGGTTAAAGC
Statistics
Matches: 965, Mismatches: 195, Indels: 170
0.73 0.15 0.13
Matches are distributed among these distances:
41 20 0.02
44 1 0.00
45 56 0.06
46 431 0.45
47 14 0.01
48 20 0.02
49 21 0.02
50 35 0.04
51 320 0.33
52 47 0.05
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (51 bp):
AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
Found at i:5116369 original size:591 final size:591
Alignment explanation
Indices: 5115248--5116372 Score: 1639
Period size: 591 Copynumber: 1.9 Consensus size: 591
5115238 CGTCGCAGTG
* * * * *
5115248 GGATGGTTTGAGGTTATCATGGCAGATCTTATCTCTATTAAGTTTCAGTGGAGCAGATTAAAGCC
1 GGATGGTTTGAAGTTATCATGGCAGATCTTATCTCTATGAAGTGTCAGTAGAACAGATTAAAGCC
* * *
5115313 ACAAACCTTATCCCTCTGAAGTTGCAGTGGGGCAGGTTGAAGAGACAAATCTTATTTTCCTAGCA
66 ACAAACCATATCCCTCTGAAGTTGCAGTGGGGCAGGTTGAAGAGACAAATATTATTTTCCTAGAA
* * *
5115378 TCGCAGTGGAATGGTTTGAAGAAGATGACGAATCTTATAACCCTGAAGTTGCAGTGGAGTAGATT
131 TCACAGTGGAATGATTTGAAGAAGATGACGAATCTTATAACCCTAAAGTTGCAGTGGAGTAGATT
* * * *
5115443 AAAGCCGATAATCTTATTTCTTTTGCGTTGTAGTGGAACAGATTAAAGCTAAAGGCAGCAAATCT
196 AAAGCCAATAATCTCATTTCTTTAGCGTTGTAGTGGAACAGATTAAAGCTAAAGGCAACAAATCT
* * * *
5115508 TATTTCCCTTGCGTCGCAGTAGATTAAAGCTAAAGGCAGCGAATCTTATTTTCCTGGCGACGCAG
261 TATTTCCCTTGCGTCGCAGTAGATGAAAACTAAAGGCAGCAAATCTTATTTTCCTAGCGACGCAG
* * * * * * *
5115573 TAGATTAAAGCTGAAGGCAACGAATCTCCTTTTCTTGGTGTTGTAGTGAAACAGATTAATGTTGA
326 TAGATTAAAGCTAAAGGCAACGAATCTCATTTCCCTCGCGTTGCAGTGAAACAGATTAATGTTGA
* * * *
5115638 GGGCAGCAAATCTTATTTACTTGGCGTCGCAGTAGATTAAAGTTGAAGGCAGCGAATCTCATTTC
391 AGGCAGCAAATCTTATTTACCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTCATTTC
* * * * *
5115703 CTTGGCGTTGTAGTGGAATGGATTAACGCTAAAGGCAGCGAATCTGATTTCTCTGGCGTCGCAGT
456 CTTGGCGTTGCAGTGGAATAGATTAAAGCTAAAGGCAGCGAATCTGATTTCGCTGGCGTCACAGT
5115768 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCACAGTAGATTAAATCAGAAGGAAA
521 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCACAGTAGATTAAATCAGAAGGAAA
5115833 CGAGTA
586 CGAGTA
*
5115839 GGATGGTTTGAAGTTATCATGGCAGATTTTATCTCCT-TGAAGTCGT-AGTAGAACAGATTAAAG
1 GGATGGTTTGAAGTTATCATGGCAGATCTTATCT-CTATGAAGT-GTCAGTAGAACAGATTAAAG
5115902 CCACAAACCATATCCCTCTGAAGTTGCAGTGGGGCAGGTTGAAGAGACAAATATTATTTTCCT-G
64 CCACAAACCATATCCCTCTGAAGTTGCAGTGGGGCAGGTTGAAGAGACAAATATTATTTTCCTAG
* * * *
5115966 AAGTTACAGTGGAATGATTTGAAGAAGATGATGAATCTTATATCCCTAAAGTTGTAGTGGAGTAG
129 AA-TCACAGTGGAATGATTTGAAGAAGATGACGAATCTTATAACCCTAAAGTTGCAGTGGAGTAG
* *
5116031 ATTAAAGCCAATAATCTCATTTCTTTAGCGTTGTAGTGGAATAGATTAAAGCTGAAGGCAACAAA
193 ATTAAAGCCAATAATCTCATTTCTTTAGCGTTGTAGTGGAACAGATTAAAGCTAAAGGCAACAAA
* * * * *
5116096 TCTTATTT-CCTTGGGATCGGAGTAGATGAAAACTGAAGGCATCAAATCTTATTTTCCTAGCGTC
258 TCTTATTTCCCTTGCG-TCGCAGTAGATGAAAACTAAAGGCAGCAAATCTTATTTTCCTAGCGAC
* * *
5116160 GCAGTAGATTAAAGCTAAAGGTAGCGAATCTCATTTCCCTCGCGTTGCAGTGGAACAGATTCAA-
322 GCAGTAGATTAAAGCTAAAGGCAACGAATCTCATTTCCCTCGCGTTGCAGTGAAACAGATT-AAT
* * * * *
5116224 GTTGAAGGTAGTAAATCTTATTTCCCTAGCGTCGTAGTAGATTAAAGCTGAAGGCAGTGAATCTC
386 GTTGAAGGCAGCAAATCTTATTTACCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTC
* * * *
5116289 ATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGTAGCGAATCTTATTTCGCTGGGGTC
451 ATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTAAAGGCAGCGAATCTGATTTCGCTGGCGTC
5116354 ACAGTAGATTAAAGCTGAA
516 ACAGTAGATTAAAGCTGAA
5116373 TGAATCTCAT
Statistics
Matches: 470, Mismatches: 59, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
590 8 0.02
591 457 0.97
592 5 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (591 bp):
GGATGGTTTGAAGTTATCATGGCAGATCTTATCTCTATGAAGTGTCAGTAGAACAGATTAAAGCC
ACAAACCATATCCCTCTGAAGTTGCAGTGGGGCAGGTTGAAGAGACAAATATTATTTTCCTAGAA
TCACAGTGGAATGATTTGAAGAAGATGACGAATCTTATAACCCTAAAGTTGCAGTGGAGTAGATT
AAAGCCAATAATCTCATTTCTTTAGCGTTGTAGTGGAACAGATTAAAGCTAAAGGCAACAAATCT
TATTTCCCTTGCGTCGCAGTAGATGAAAACTAAAGGCAGCAAATCTTATTTTCCTAGCGACGCAG
TAGATTAAAGCTAAAGGCAACGAATCTCATTTCCCTCGCGTTGCAGTGAAACAGATTAATGTTGA
AGGCAGCAAATCTTATTTACCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTCATTTC
CTTGGCGTTGCAGTGGAATAGATTAAAGCTAAAGGCAGCGAATCTGATTTCGCTGGCGTCACAGT
AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCACAGTAGATTAAATCAGAAGGAAA
CGAGTA
Found at i:5116601 original size:188 final size:189
Alignment explanation
Indices: 5116119--5116624 Score: 567
Period size: 188 Copynumber: 2.7 Consensus size: 189
5116109 GGATCGGAGT
* * * * * *
5116119 AGATGAAAACTGAAGGCATCAAATCTTATTTTCCTAGCGTCGCAGTAGATTAAAGCTAAAGGTAG
1 AGATTAAAACTGAAGGCAGCGAATCTTATTTCCCTGGAGTCGCAGTAGATTAAAGCTAAAGG-AG
* **
5116184 CGAATCTCATTTCCCT-CGCGTTGCAGTGGAACAGATTCAAGTTGAAGGTAGTAAATCTTATTTC
65 C-AATCTCATTTCCCTGC-CGTTGCAGT-G-ACAGATTAAAGTTGAAGGTAGCGAATCTTATTT-
* * * * *
5116248 CCTAGCGTCGTAGTAGATTAAAGCTGAAGGCAGTGAATCTCATTTCCTTGGCGTTGCAGTGGAAT
125 CCTAGCGTCGAAGTAGATTAAAGCAGAAGGAAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
* * * * * * *
5116313 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCGCTGGGGTCACAGTAGATTAAAGCTGAA--TG-
1 AGATTAAAACTGAAGGCAGCGAATCTTATTTCCCTGGAGTCGCAGTAGATTAAAGCTAAAGGAGC
* * * *
5116375 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGTTGAAGGTAACGAATCTTATTTCCTG
66 AATCTCATTTCCCTGCCGTTGCAGT-G-ACAGATTAAAGTTGAAGGTAGCGAATCTTATTTCCTA
* * *
5116440 GGGTCGAAGTAGATTAAAGCAGAAGGAAGCGAATCTTATTTCTTTGGCGTTGCAGTGGAAC
129 GCGTCGAAGTAGATTAAAGCAGAAGGAAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
* *
5116501 AGATTAAATCTGAAGGCAGCGAATCTTATTTCCCTGGAGTCGTAGTAGATTAAAGCTAAAGGCAG
1 AGATTAAAACTGAAGGCAGCGAATCTTATTTCCCTGGAGTCGCAGTAGATTAAAGCTAAAGG-AG
* * * *
5116566 CAAATCTTATTTCCCTGCCGTTGTAGT-A-A-ATTAAAGTTGAAGGCAGCGAATCTCATTTC
65 C-AATCTCATTTCCCTGCCGTTGCAGTGACAGATTAAAGTTGAAGGTAGCGAATCTTATTTC
5116625 TTTGGCATTG
Statistics
Matches: 264, Mismatches: 42, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
188 136 0.52
189 55 0.21
190 1 0.00
191 2 0.01
193 21 0.08
194 49 0.19
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (189 bp):
AGATTAAAACTGAAGGCAGCGAATCTTATTTCCCTGGAGTCGCAGTAGATTAAAGCTAAAGGAGC
AATCTCATTTCCCTGCCGTTGCAGTGACAGATTAAAGTTGAAGGTAGCGAATCTTATTTCCTAGC
GTCGAAGTAGATTAAAGCAGAAGGAAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
Found at i:5116764 original size:97 final size:96
Alignment explanation
Indices: 5116056--5124993 Score: 2775
Period size: 97 Copynumber: 92.0 Consensus size: 96
5116046 CTCATTTCTT
* * * * * *
5116056 TAGCGTTGTAGTGGAATAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTGG-GATCGGAGTA
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG-TCGCAGTA
* * * * *
5116120 GATGAAAACTGAAGGCATCAAATCTTATTTTCC
65 GATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * *
5116153 TAGCGTCGCAGT-----AGATTAAAGCTAAAGGTAGCGAATCTCATTTCCCTCGCGTTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
* * * **
5116213 AACAGATTCAAGTTGAAGGTAGTAAATCTTATTTCCC
64 ---AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
** * * * *
5116250 TAGCG-T-C-GT--AGTAGATTAAAGCTGAAGGCAGTGAATCTCATTTCCTTGGCGTTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* *
5116310 AATAGATTAAAGCTGAAGGTAGCGAATCTTATTTCGC
63 --TAGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * ** * * * *
5116347 TGGGGTCACAGT-----AGATTAAAGCTG-A---A-TGAATCTCATTTCCTTGGCGTTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
* * * *
5116402 AACAGATTAAAGTTGAAGGTAACGAATCTTATTTCC
64 ---AGATTAAAGCTGAAGGCAGCGAATCTTATTCCC
* * * * ** *
5116438 T-G-G--G--GTCGAAGTAGATTAAAGCAGAAGGAAGCGAATCTTATTTCTTTGGCGTTGCAGTG
1 TAGCGTTGCAGTGGAA-CAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-
*
5116497 GAACAGATTAAATCTGAAGGCAGCGAATCTTATTTCCC
64 ----AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * ** * * * * * *
5116535 TGGAG-T-C-GT--AGTAGATTAAAGCTAAAGGCAGCAAATCTTATTTCCCTGCCGTTGTAGTAA
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * **
5116595 ATTAAAGTTGAAGGCAGCGAATCTCATTTCTT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * ** * *
5116627 TGGCATTGGC-GTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCCTATTTCCCTGGCGTGGCAGT
1 TAGCGTT-GCAGT-GGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT
* * *
5116691 AGATTAAATCAGAAGGACA-CGAGTCTTATTCCC
64 AGATTAAAGCTGAAGG-CAGCGAATCTTATTCCC
* * * * *
5116724 TCAGCGTTGCAGTGGAACAGATTAAAGTTGAAGCCAGCGAATTTTATTTCCCCGGCGTCGCTGTA
1 T-AGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTA
* * *
5116789 GATTAAACCTGAAGGCCGCGAATCTTATTTCCT
65 GATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
** * * *
5116822 TTTCGTTGCAGTAGAACAGATTAAAGCTGAA-GCAGTGAATCTTATTTCCCTGGCGTCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * **
5116886 ATTAAAACTGAAGGCAGTGAATCTTATTTCGA
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * ** * *
5116918 TTGCGTTGTAGTGGAACAGATTAAAGCTGAAGGTAGTAAATCTTATTTCCC-GAGCGTCACAGCA
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTG-GCGTCGCAGTA
* *
5116982 GATTAAAGCTGAAGGCAGCAAATCTCTTTTCCC
65 GATTAAAGCTGAAGGCAGCGAATCT-TATTCCC
* * * * * ** * *
5117015 TGGCATTGCAGTGGAACTGATTAAAGCTGAATGTAGTAAATCTTATTTCCCTGGCATCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * *
5117080 ATTAAAGCTGAAGGCGGTGAATCTTATTTCCT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * *
5117112 TAGCGTTGCAGTGGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACCTGGAGTCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
*
5117177 ATTAAA-CTTGAAGGCAGCGAATCTCATT---
66 ATTAAAGC-TGAAGGCAGCGAATCTTATTCCC
* * * ** * * *
5117205 TA-C-CTGGAGTCGTAGTAGATTAAA-CTTGAAGGCAGCGAATCTCATTTCCCTGGTGTTGCAGT
1 TAGCGTTGCAGT-GGAACAGATTAAAGC-TGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT
* * *
5117267 AGATTAAAGCTGAAGGAAGCAAATCTTATTCCTT
64 AGATTAAAGCTGAAGGCAGCGAATCTTATTCC-C
* * ** * * ** * *
5117301 TGGCATCACAGTGGAACAAATTAAAGCTGAAGGCAGCGAATCTCATTTCCCTAACGTCGTAATAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* *
5117366 ATTAAAGCTGAAGGCATCGAATCTTATTTCC
66 ATTAAAGCTGAAGGCAGCGAATCTTATTCCC
* * *
5117397 TAAGCGTTGCAGTGGAACAGATTAAACCTGAAGCCAGTGAATCTTATTTCCCTGGCGTCGCAGTA
1 T-AGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTA
* * * ***
5117462 GGTTAAAGCTGAATGCAGCGAATCTCATTTNNNNNN
65 GATTAAAGCTGAAGGCAGCGAATCTTA-TT---CCC
*****************************************************************
5117498 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
*******************************
5117563 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
66 ATTAAAGCTGAAGGCAGCGAATCTTATTCCC
* * * * * * * *
5117594 TGGTCATTGCAGTGGAACAAATTAAGGCTAAAGGCAGTGAATCTTATATCCCTAGCGTCGCAGTA
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-
* * *
5117659 AGCA--AAAGTTGAAGGCAGAGAATCTTATTTCCT
64 AG-ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * ** * *
5117692 TGGCGTTGCAGTGGAACATATTAAAGTTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
* * *
5117757 AACAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCC
64 ---AGATTAAAGCTGAAGGCAGCGAATC-TTATTCCC
** * * * * * * *
5117793 -ATGTCGTCACAGT---A-A-ATTAAAGTTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAAT
1 TA-G-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGC-A-
* * * *
5117852 GGAACAGGTTAAAGCTGAAGGCGGCGAATCTCA-TCTCC
62 -G--TAGATTAAAGCTGAAGGCAGCGAATCTTATTC-CC
* * ** *
5117890 TTGCCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAAG-GAATCTTATTTCCCTGGCACCGCAAT
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGC-AGCGAATCTTATTTCCCTGGCGTCGCAGT
* * * * * *
5117954 AGACTAAAGGTAAAGGCGGTGAATCTTACTTCCT
64 AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * *
5117988 TGGCGTTTCAGTAGAATAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT-GCTGTTGCAGTA
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC-GTCGCAGT-
* * * *
5118052 GAACAGAGTAAAGCAGAAGGCAACAAATCTTATTTCCC
64 ----AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * *
5118090 T-GACGTCGCAGT-----AGACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGTTGCAGTG
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-
* * *
5118149 GAACAGATTAAAGCTGAAAGCAGCGAAT-TCCATTTCCT
64 ----AGATTAAAGCTGAAGGCAGCGAATCT-TA-TTCCC
* * * * * * *
5118187 TGGCATTGCAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATCGCATTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * * * *
5118252 GTGAAAGCTGAAGGCAGCAAATCTCATTTCCT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * *
5118284 TGGCGTTGCAGTTGAACTGATTAAAGTTGAAGGCAGCAAATCTTATTTCGCTGGCGTCAG-AGTA
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTC-GCAGTA
* * * *
5118348 GATTAAAACTTAAGGCAGTGAATCTTATTTCCT
65 GATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* *** * * * *
5118381 TAGCGTTGCAGTGGAACATATTAAAGCTGAAGGCAATAAATATTATTTCCTTGGCATTGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC---GTCGCAG
*
5118446 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
63 --TAGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * ** *
5118483 T-GTCATCGCAGT-----AGATTCAAGCTGAAGGTAGCGAATCTTATTTCGTTGGCGTTGCAGTG
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-
* * * ** * *
5118542 GAACAGATTATAGTTGACGGCAGCGAATCCCATTTTCT
64 ----AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * ** * * ** * *
5118580 TGGCATTGCAGTGGATCAAATTAAAATTGAAGGTAGC--AT-TTCTTT-GGTGTTGCAGT-GGAA
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTG--GC-GTCGCAG
* *
5118640 CAGATTAAAGCTGAAGGCAGGGAATCTTATTTCCC
63 TAGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
** * * * * * * * *
5118675 T-GTCGTCACAGT-----TGATTAAAGTTGAAGGCAGCAAATTTTATTTCCTTGGAGTTGTAGTA
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-
* * * *
5118734 GAACAGATTCAAGCGGAAGGCACCAAATCTTATTTCCC
64 ----AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * * *
5118772 T-GACG-T-C---GCAATAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAGTA
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-
* * * *
5118831 GAACAGATTAAAGCTGACGACAGCGAAT-TACATTTCCT
64 ----AGATTAAAGCTGAAGGCAGCGAATCT-TA-TTCCC
* * * * * * * * * * *
5118869 TGGCATTACAGTGGAACAAATTAAAGCTAAAAGAAGCAAATCTTATTTCCTTGGCGTCGTATTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * * *
5118934 ATTAAAACTGAAGGCAGCAAATCTCATTTCCT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * *
5118966 TGGCG-TACTAGT-G----GA--AAAGCAGAAGGCAGCAAATCTTATTTCTCTAGCATCGTAGTA
1 TAGCGTTGC-AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTA
* * *
5119023 GATTAAAGCTGAAGGCAACAAATCTCATTTCCC
65 GATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * *
5119056 TGGCGTTGCAGTGGAACAGATTAAAGCTGAA-GCAGTGAATTTTATTTCCCTGGCGTCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * **
5119120 ATTAAAACTGAAGGCAGTGAATCTTATTTCGA
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * ** * * *
5119152 TTGCGTTGTAGTGGAACAAATTAAAGCTGAAGGTAGTAAATCTTATTTCCCTAGCGTCACAGCAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* *
5119217 ATTAAAGCTGAAGGCAGCAAATCTCTTTTCCC
66 ATTAAAGCTGAAGGCAGCGAATCT-TATTCCC
* * * * ** * *
5119249 TGGCATTGCAGTGGAACAGATTAAAGCTGAATGTAGTAAATCTTATTTCCCTGGCATCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * *
5119314 ATTAAAGCTGAAGGCGGTGAATCTTATTTCCT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * *
5119346 TAGCGTTACAGTGGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACCTGGAGTCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * *
5119411 ATTAAA-CTTGACGGCAGCGAATCTCATTTTCC
66 ATTAAAGC-TGAAGGCAGCGAATCTTA-TTCCC
** ** * * * *
5119443 GGGTATTGCAGT-----AGATTAAAGCTGAAGGAAGCGAATCTTA-TTCCTTTGGCATCACAGTG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-CTGGCGTCGCA---
* *
5119502 GAATAGATTAAAGCTGAAGGCATCGAATCTTATTTCC
62 G--TAGATTAAAGCTGAAGGCAGCGAATCTTATTCCC
* * * *
5119539 TAAGCGTTGCAGTGGAACAGATTAAACCTGAAGCCAGTGAATCTTATTTCCCTAGCGTCGCAGTA
1 T-AGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTA
* * * * *
5119604 GGTTAAAGCTGAATGCAGCGAATCTCATTTTCT
65 GATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * *
5119637 TGGCATTGCAGTGGAACAAATTAAGGCTAAAGGCAGTGAATCTTATATCCCTAGCGTCGCAGTAA
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-A
* * *
5119702 GCA--AAAGTTGAAGGCAGAGAATCTTATTTCCT
65 G-ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * ** * *
5119734 TGGCGTTGCAGTGGAACATATTAAAGTTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
* * *
5119799 AACAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCC
64 ---AGATTAAAGCTGAAGGCAGCGAATC-TTATTCCC
** * * * * * * *
5119835 -ATGTCGTCACAGT---A-A-ATTAAAGTTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAAT
1 TA-G-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGC-A-
* * * *
5119894 GGAACAGGTTAAAGCTGAAGGCGGCGAATCTCA-TCTCC
62 -G--TAGATTAAAGCTGAAGGCAGCGAATCTTATTC-CC
* * ** *
5119932 TTGCCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAAG-GAATCTTATTTCCCTGGCACCGCAAT
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGC-AGCGAATCTTATTTCCCTGGCGTCGCAGT
* * * * * *
5119996 AGACTAAAGCTAAAGACGGTGAATCTTATTTCCT
64 AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * *
5120030 TGGCGTTTCAGTAGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGCCGTTGCAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
* * * *
5120095 AACAGAGTAAAGCAGAAGGCAACAAATCTTATTTCCC
64 ---AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * *
5120132 T-GACGTCGCAGT-----AGACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGTTGCAGTG
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---
* * *
5120191 GAATAGATTAAAGCTGAAAGCAGCGAAT-TCCATTTCCT
62 G--TAGATTAAAGCTGAAGGCAGCGAATCT-TA-TTCCC
* * * * ** * * * *
5120229 TGGCATTGCAGAGGAACAAATTAAAGCTGAAGGGTGCAAATCTTATTTCCTTGGCATCGCATTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * * * *
5120294 ATGAAGGCTGAAGGCAGCAAATCTCATTTCCT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * ** *
5120326 TGGCGTTGCAGTTGAACTGATTAAAGTTGAAGACAGCAAATCTTATTTCGTTGCCGTCAG-AGTA
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTC-GCAGTA
* * * *
5120390 GATTAAACCTTAAGGCAGTGAATCTTATTTCCT
65 GATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* *** * *
5120423 TAGCGTTGCAGTGGAACATATTAAAGCTGAAGGCAATAAATCTTATTTCCTTGGCGTTGCAGTTG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG-T-
* * *
5120488 AACTGATTAAAGTTGAAGGCAGCAAATCTTATTTCGC
64 -A--GATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* ** * * * * * *
5120525 TGGCG-T-CA---GAGTAGATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
* *** *
5120585 AACATATTAAAGCTGAAGGCAATAAATCTTATTTCC
64 ---AGATTAAAGCTGAAGGCAGCGAATCTTATTCCC
* * * * * *
5120621 TTGACATTGTAGTAGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCATCGCAGTA
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTA
* * * * **
5120686 TATTCAAGCTGAAGGTAGCGAATCTTTTTTCGT
65 GATTAAAGCTGAAGGCAGCGAATC-TTATTCCC
* * * ** * * * *
5120719 TGGCGTTGCAGTGGAACAGATTATAGCTGACGGCAGCGAATCCCATTTTCTTGGCATTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* ** * *
5120784 ATCAAATTAAAATTGAAGGCAGCAAATCTTATTTCCT
63 -T-AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * ** * *
5120821 TGGCATTGCA-T----TAGATTAAAGCTGAAGGTAGCAAATCTCATTTCTTTGGTGTTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
5120881 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
64 ---AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * * * *
5120918 T-GTCGTCGCAGT-----TGATTAAAGTTGAAGGCAACAAATTTTATTTCCTTGGAGTTGTAGTA
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-
* * *
5120977 GAACAGATTCAAGCAT-AAGGCACCAAATCTTATTTCCC
64 ----AGATTAAAGC-TGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * * *
5121015 T-GACG-T-C---GCAATAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAGTA
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-
* * * *
5121074 GAACAGATTAAAGCTGACGACAGCGAAT-TACATTTCCT
64 ----AGATTAAAGCTGAAGGCAGCGAATCT-TA-TTCCC
* * * * * * * * * * *
5121112 TGGCATTACAGTGGAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTTCTTGGCGTCGTATTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* *
5121177 ATTAAAGCTGAAGGCAGCGAATCTCATTTCCT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * *
5121209 TGGCGTAGTAGT-G----GA--AAAGCAGAAGGCAGCAAATCTTATTTCTCTAGCGTCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * * *
5121267 ATTAAAGCTGAAGGCAACAAACCTCATTTCCC
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* ** * *
5121299 TGGCGTTGCAGTGGAACAGATTAAAGCTGAA-GCAATGAATCTTATTTCCCCGGCGTCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * * **
5121363 ATTAAAACAGAAGGCAGTGAATCTTATTTCGA
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * ** * * *
5121395 TTGCGTTGTAGTGGAACAAATTAAAGCTGAAGGTAGTAAATCTTATTTCCCTAGCGTCACAGCAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * *
5121460 ATTAAAGCTGAAGACAGCAAATCTCTTTTCCC
66 ATTAAAGCTGAAGGCAGCGAATCT-TATTCCC
* * * * ** * * *
5121492 TGGCATTGCAGTGGAACAGATTAAAGCTGAATGTAGTAAATTTTATTTCCCTGGCATCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * *
5121557 ATTAAAGCTGAAGGCGGTGAATCTTATTTCCT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * *
5121589 TAGCGTTGCAGTGGAACAGATTAAAGCTAAAGGCAACGAATCTTATTTACCTAGAGTCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
*
5121654 ATTAAA-CTTGAAGGCAGCGAATCTCATTTCCC
66 ATTAAAGC-TGAAGGCAGCGAATCTTA-TTCCC
* * * * * *
5121686 TGGTGTTGCAGT-----AGATTAAAGCTGAAGGAAGCGAATCTTA-TTCCTTTGGCATCACAGTG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-CTGGCGTCGCAGT-
* *
5121745 GAACAAATTAAAGCTGAAGGCAGCGAATCTCATTTCCC
64 ----AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * *
5121783 TAACG-T-C-GT--AATAGATTAAAGCTGAAGGCATCGAATCTTATTT-CCTAAGCGTTGCAGTG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT-GGCGTCGCAGT-
* * **
5121842 GAACAGATTAAACCTGAAGCCAGTAAATCTTATTTCCC
64 ----AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * * * *
5121880 TGGCGTCGCAGT-----AGGTTAAAGCTGAATGCAGCGAATCTCATTTTCTTGGCATTGGAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
* * *
5121940 AACAGATTAACGCTAAAGGCAGTGAATCTTATATCCC
64 ---AGATTAAAGCTGAAGGCAGCGAATCTTAT-TCCC
* * * * * *
5121977 TAGCGTCGCAGT---A-AG-CTAAAGTTGAAGGCAGAGAATCTTATTTCCTTGGCGTTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
* * ** *
5122037 AACATATTAAAGTTGAAGGCAGTAAATCTTATTTCCT
64 ---AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * *
5122074 TGGCGTTGCAGTGGAACAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCGCAGTA
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCCTGGCGTCGCAGTA
* * * *
5122138 AATTAAAGCTGAAGGTAGCAAATCTTATTTCCT
65 GATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * * * *
5122171 TAGCATTGCAATGGAACAGGTTAAAGCTGAAGGCGGCGAATCTCATCTCCTTGCCGTTGTAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* **
5122236 AATAGATTAAAGTTGAAGGCAATGAATCTTATTTCCC
63 --TAGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
** * * * * * * * * *
5122273 T---G--GCACAGCAATAGACTAAAGGTAAAGGCGGTGAATCTTATTTCCTTGGCGTTTCAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG--TC-GCAG
* * **
5122333 AACAGATTAAAGCTGAAGGCAGTGAATCTTATTTTTTC
63 --TAGATTAAAGCTGAAGGCAGCGAATCTTA--TTCCC
* * * * * * * * *
5122371 T-GTCATTGCAGTAGAACAGAGTAAAAGCAGAAGGCAACAAATCTTGTTTCCCTGACGTTGCAGT
1 TAG-CGTTGCAGTGGAACAGA-TTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT
* * * * *
5122435 AGACTAAAGCTAAAGCCAACGACTCTTATTTCCC
64 AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
** * * * * * *
5122469 CGGCGTCGCAGTGGAACAGATTAAAGCTGAAAGCAGCGAAT-TCCATTTCCTTGGCATTGCAGTG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAGT-
* * *
5122533 GAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCC
64 ----AGATTAAAGCTGAAGGCAGCGAATCTTATTCCC
* * ** * * * * * * * *
5122570 T----TGGCA-TCGCATTAGGTGAAAGCTAAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTT
1 TAGCGTTGCAGT-GGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG-T
* * *
5122630 GAACTGATTAAAGTTGAAGGCAGCAAATCTTATTTCGC
64 --A--GATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * *
5122668 TGGCGTTAG-AGT-----AGATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAGTG
1 TAGCGTT-GCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT-
* *** *
5122727 GAACATATTAAAGCTGAAGGCAATAAATCTTATTTCCT
64 ----AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * *
5122765 TGGCATTGTAGTAGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCATCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * **
5122830 ATTCAAGCTGAAGGTAGCGAATCTTATTTCGT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * ** * * * * *
5122862 TGGCGTTGCAGTGGAACAGATTATAGCTGACGGCAGCGAATCCCATTTTCTTGACATTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* ** * * *
5122927 ATCAAATTAAAATTGAAGGTAGCAAATCTTATTTCCT
63 -T-AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * ** * *
5122964 TGGCGTCGCA-T----TAGATTAAAGCTGAAGGTAGCAAATCTCATTTCTTTGGTGTTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
5123024 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
64 ---AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * * * *
5123061 T-GTCGTCGCAGT-----TGATTAATGTTGAAGGCAGCAAATTTTATTTCCTTGGAGTTGTAGTA
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT-G-G-CGTCGCA
* * *
5123120 GAATAGATTAAAGCAGAAGGCACCAAATCTTATTTCCC
62 G--TAGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * * *
5123158 T-GACG-T-C---GCAATAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAGTA
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTA
* * * *
5123217 GAACAGGTTAAAGCTGACGACAGCGAAT-TACATTTCCT
65 G---A--TTAAAGCTGAAGGCAGCGAATCT-TA-TTCCC
* * * * * * * * * *
5123255 TGGCATTACAGTGGAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTCCTTGGCGTCGTATTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * *
5123320 ATTAAAGTTGAAGGCAGCGAATCTCATTTCCT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* ** * * * * *
5123352 TGGCG-T--AGT--AATGGA--AAAGCAGAAGGCAGCAAATCTTATTTCTCTAGCGTCGTAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * * *
5123410 ATTAAACCTGAAGGCAACAAATCTCATTTCCC
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * *** * *
5123442 TGGCGTTGCAGTGGAACAGATTAAAGTTGAAGCCAATAAATCTTATTTCCCTGGCATCGCAGCAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* *
5123507 ATTAAAGCTGAAGGCAGCGAATCTCATTTCCT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * *
5123539 TAGTGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTATTTCTCT-GCTGGCGCAGTA
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC-GTCGCAGTA
* * * *
5123603 AATTAAAGCTGAAGGAAGTGAATCTTATTTCCT
65 GATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * *
5123636 TGGCGTTGTAGTGGAACAGATTAAAGTTAAAGGCAACAAATCTTATTTCCCTGGCGTCGCAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * * * **
5123701 ATTCAAGTTGAAGGCAGTGAATCTCATTTCAT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * *
5123733 TTGCATTGCAGTAGAATAGATTAAAGCTGAATGCAGCAAATCTTATTTCCCTGGCATCGCAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * *
5123798 ATTAAAGATGAAGGCAGCGAGTCTTATTTCCT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * *
5123830 TAGCGTTGTAGTGGAATAGATTAAAGCAGAAGGCAGTGAATCTTATTTCCCTAGCGTCGCAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * * * ***
5123895 GTTAAAGCTGAAGCCAGAGAATCTCATTTTT
66 ATTAAAGCTGAAGGCAGCGAATCTTATTCCC
* * * ** * * * *
5123926 TTGTAGTCGCAGTGGAACAGATTAAAGCTGGCGGTAACAAATCTTATTTCCCTAGCGTCGCAGTA
1 TAG-CGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTA
* * * *
5123991 GATTAAAGCAGGAGGCAACAAAT-TTCATTTCCC
65 GATTAAAGCTGAAGGCAGCGAATCTT-A-TTCCC
* * * * ** * *
5124024 TAGCATTGTAGTGGAACAGAATAAAGCTGAAGGTAGTAAATATTATTTCCCTAGCGTCGCAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * * *
5124089 ATTAAAGCTGAAGGTAACGAATCTCATCTCCT
66 ATTAAAGCTGAAGGCAGCGAATCTTAT-TCCC
* ** * * * *
5124121 TGGTATTGCAGCGGAACAGATTAAAACTGAAGGCAGCAAACCTTATTTCCCTGGCGTCGCAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * * * *
5124186 ACTAAAGATAAAGCCAGTGAATCTTATTTCCC
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * ** * * *
5124218 TGGCGTTGCAGTGGAACAGATTAAAGCTGATGACAGCGAATCTCCTTTCCTTGGCGTTGTAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
* * * *
5124283 AACAAATTAAAGCTGAAGGCAACAAATCTTATTTCCT
64 ---AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * ** * * * * * * * *
5124320 TAACG-T-CA---CATTAGATTAAAGCTAAAGGTAGCAAATCTCATTTCCTTAGTGTTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--
* * * *
5124380 AACAGATTAAAG-TAGGAGGCAACAAATCTTATTTCTC
64 ---AGATTAAAGCT-GAAGGCAGCGAATCTTA-TTCCC
* * * * * *
5124417 TAGCGTCGCAGT-----AGATTAAAGCTAAAGGCAG-GAAATATCATTTCCCTGGCATTGCAGTG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG-AATCTTATTTCCCTGGCGTCGCAGT-
* * * ** *
5124476 GAACAAATTAAAGTTAAAGGCAGTAAATTTTATTTCCC
64 ----AGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * * * *
5124514 TGGCATCGCAGT-----AGATTAAAGCTGCACGTAGCAAATCTTATTTCCTTGGTGTTGCAGTGG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
*
5124574 AATAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCC
63 --TAGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * *
5124611 TGGCATCGCAGT-----AGATTAAAGCTGAAGGCAGTGAATCTTATTTCATTTCCGTTGCAGT-G
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTC----CC-TGGC-GTCG
* * * * *
5124670 GAATAGATTAAAGCTAAAGGCAGCGAATCTCATTTCCA
60 CAGTAGATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * * **
5124708 TTGCATTGCAGTGGAAGAAATTAAAGCTGACGGCAGCAAATCTTTTTTCCCTAGCGTCGCTCTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
** * * *
5124773 ATTAAATTTAAAGGCATCGAATCTCATTTCCC
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * * * * * *
5124805 TGGCGTTGCACTGGAACATATTAAAGCTGAAAGAAG-TAATCTTATTTTCCTGACGTCACAGTAG
1 TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
* * *
5124869 ATTAAAGCTGAAGGCAGCGAATCTCATTTTCT
66 ATTAAAGCTGAAGGCAGCGAATCTTA-TTCCC
* * * * *
5124901 TGGCATT-CGAGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTACCTGGCGTCGCAGTA
1 TAGCGTTGC-AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTA
* * * *
5124965 GATTAAAGTTGAAAGCGGTGAATCTTATT
65 GATTAAAGCTGAAGGCAGCGAATCTTATT
5124994 TCTCTGGCTT
Statistics
Matches: 6685, Mismatches: 1714, Indels: 885
0.72 0.18 0.10
Matches are distributed among these distances:
85 2 0.00
87 1 0.00
89 2 0.00
90 229 0.03
91 34 0.01
92 261 0.04
93 16 0.00
94 21 0.00
95 55 0.01
96 437 0.07
97 4492 0.67
98 191 0.03
99 52 0.01
100 43 0.01
101 42 0.01
102 763 0.11
103 20 0.00
104 24 0.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.28
Consensus pattern (96 bp):
TAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAG
ATTAAAGCTGAAGGCAGCGAATCTTATTCCC
Found at i:5117871 original size:148 final size:148
Alignment explanation
Indices: 5117600--5125540 Score: 3686
Period size: 148 Copynumber: 54.4 Consensus size: 148
5117590 NNTTTGGTCA
* * * * * * ***
5117600 TTGCAGTGGAACAAATTAAGGCTAAAGGCAGTGAATCTTATATCCCTAGCGTCGCAGTAAGCAAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * *
5117665 AGTTGAAGGCAG-AGAATCTTATTTCCTTGGCGTTGCAGTGGAACATATTAAAGTTGAAGGCAGT
66 AGCTGAAGGCAGCA-AATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
*
5117729 AAATCTTATTTCCTTGGCG
130 GAATCTTATTTCCTTGGCG
* * * * *
5117748 TTGCAGTGGAACAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCACAGTAAATTA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCCTGGCGTCGCAGTAAATTA
* * * * * *
5117812 AAGTTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAATGGAACAGGTTAAAGCTGAAGGCGGC
65 AAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * *
5117877 GAATCTCATCTCCTTGCCG
130 GAATCTTATTTCCTTGGCG
* ** * * *
5117896 TTGTAGTGGAACAGATTAAAGCTGAAGGCAAG-GAATCTTATTTCCCTGGCACCGCAATAGACTA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGC-AGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTA
* * * ** * * * * *
5117960 AAGGTAAAGGCGGTGAATCTTACTTCCTTGGCGTTTCAGTAGAATAGATTAAAGCTGAAGGCAGC
65 AAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
*
5118025 GAATCTTATTTCCCT-GCTG
130 GAATCTTATTTCCTTGGC-G
* * * * * * * *
5118044 TTGCAGTAGAACAGAGTAAAGCAGAAGGCAACAAATCTTATTTCCCTGACGTCGCAGTAGACTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * ** * *
5118109 AGCTAAAGCCAACGACTCTTATTTCCCCGGCGTTGCAGTGGAACAGATTAAAGCTGAAAGCAGCG
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
* *
5118174 AAT-TCCATTTCCTTGGCA
131 AATCT-TATTTCCTTGGCG
* * * * * ** *
5118192 TTGCAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATCGCATTAGGTGAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * *
5118257 AGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGCAGTTGAACTGATTAAAGTTGAAGGCAGCA
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
5118322 AATCTTATTTCGC-TGGCG
131 AATCTTATTTC-CTTGGCG
** * * * * * *
5118340 -T-CA---GAGTAGATTAAAACTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAGTGGAACAT
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
** * * *
5118400 ATTAAAGCTGAAGGCAATAAATATTATTTCCTTGGCATTGTAGTAGAACAGATTAAAGCTGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* * *
5118465 CAGCGAATCTTATTTCCCTGTCA
126 CAGCGAATCTTATTTCCTTGGCG
* * * ** *
5118488 TCGCAGT-----AGATTCAAGCTGAAGGTAGCGAATCTTATTTCGTTGGCGTTGCAGTGGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
* * * * ** * * * **
5118548 ATTATAGTTGACGGCAGCGAATCCCATTTTCTTGGCATTGCAGTGGATCAAATTAAAATTGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* * *
5118613 TA--G---C--ATTTCTTTGGTG
126 CAGCGAATCTTATTTCCTTGGCG
* * * **
5118629 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGGGAATCTTATTTCCCTGTCGTCACAGTTGATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * * *
5118694 AGTTGAAGGCAGCAAATTTTATTTCCTTGG-AGTTGTAGTAGAACAGATTCAAGCGGAAGGCACC
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCA-TTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * *
5118758 AAATCTTATTTCCCTGACG
130 GAATCTTATTTCCTTGGCG
* * * * * * * * *
5118777 -T-C---GCAATAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAGTAGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
* * * * * * * *
5118837 ATTAAAGCTGACGACAGCGAAT-TACATTTCCTTGGCATTACAGTGGAACAAATTAAAGCTAAAA
61 ATTAAAGCTGAAGGCAGCAAATCT-TATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAG
* *
5118901 GAAGCAAATCTTATTTCCTTGGCG
125 GCAGCGAATCTTATTTCCTTGGCG
** * * * * * **
5118925 -T-C-GT--ATTAGATTAAAACTGAAGGCAGCAAATCTCATTTCCTTGGCGTAC-TAGTGGA--A
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGT-CGCAGTAAATTA
* * ** *
5118982 AAGCAGAAGGCAGCAAATCTTATTT-CTCTAGCA-T-C-GT--AGTAGATTAAAGCTGAAGGCAA
65 AAGCTGAAGGCAGCAAATCTTATTTCCT-TGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAG
* * *
5119041 CAAATCTCATTTCCCTGGCG
129 CGAATCTTATTTCCTTGGCG
* * * *
5119061 TTGCAGTGGAACAGATTAAAGCTGAA-GCAGTGAATTTTATTTCCCTGGCGTCGTAGTAGATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* ** * * * * * *
5119125 AACTGAAGGCAGTGAATCTTATTTCGATT-GCGTTGTAGTGGAACAAATTAAAGCTGAAGGTAGT
66 AGCTGAAGGCAGCAAATCTTATTTC-CTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * *
5119189 AAATCTTATTTCCCTAGCG
130 GAATCTTATTTCCTTGGCG
* * * * *
5119208 -T-CA---CAGCAGATTAAAGCTGAAGGCAGCAAATCTCT-TTTCCCTGGCATTGCAGTGGAACA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAGT---A-A
* * * * **
5119267 GATTAAAGCTGAATGTAGTAAATCTTATTTCCCTGGCA-T-C-GT--AGTAGATTAAAGCTGAAG
61 -ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAG
* * *
5119327 GCGGTGAATCTTATTTCCTTAGCG
125 GCAGCGAATCTTATTTCCTTGGCG
* * * * * *
5119351 TTACAGTGGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACCTGGAGTCGTAGTAGATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * *
5119416 A-CTTGACGGCAGCGAATCTCATTTTCC-GGGTATTGCAGT-----AGATTAAAGCTGAAGGAAG
66 AGC-TGAAGGCAGCAAATCTTA-TTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAG
*
5119474 CGAATCTTA-TTCCTTTGGCA
129 CGAATCTTATTTCC-TTGGCG
** * * * *
5119494 TCACAGTGGAATAGATTAAAGCTGAAGGCATCGAATCTTATTT-CCTAAGCGTTGCAGTGGAACA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT-GGCGTCGCAGT---A-A
* * ** * * * * * *
5119558 GATTAAACCTGAAGCCAGTGAATCTTATTTCCCTAGCGTCGCAGT-----AGGTTAAAGCTGAAT
61 -ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAG
* * *
5119618 GCAGCGAATCTCATTTTCTTGGCA
125 GCAGCGAATCTTATTTCCTTGGCG
* * * * * * ***
5119642 TTGCAGTGGAACAAATTAAGGCTAAAGGCAGTGAATCTTATATCCCTAGCGTCGCAGTAAGCAAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * *
5119707 AGTTGAAGGCAG-AGAATCTTATTTCCTTGGCGTTGCAGTGGAACATATTAAAGTTGAAGGCAGT
66 AGCTGAAGGCAGCA-AATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
*
5119771 AAATCTTATTTCCTTGGCG
130 GAATCTTATTTCCTTGGCG
* * * * *
5119790 TTGCAGTGGAACAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCACAGTAAATTA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCCTGGCGTCGCAGTAAATTA
* * * * * *
5119854 AAGTTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAATGGAACAGGTTAAAGCTGAAGGCGGC
65 AAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * *
5119919 GAATCTCATCTCCTTGCCG
130 GAATCTTATTTCCTTGGCG
* ** * * *
5119938 TTGTAGTGGAACAGATTAAAGCTGAAGGCAAG-GAATCTTATTTCCCTGGCACCGCAATAGACTA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGC-AGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTA
* * * ** * * *
5120002 AAGCTAAAGACGGTGAATCTTATTTCCTTGGCGTTTCAGTAGAACAGATTAAAGCTGAAGGCAGC
65 AAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* *
5120067 GAATCTTATTTCCCTGCCG
130 GAATCTTATTTCCTTGGCG
* * * * * * * *
5120086 TTGCAGTAGAACAGAGTAAAGCAGAAGGCAACAAATCTTATTTCCCTGACGTCGCAGTAGACTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * ** * * *
5120151 AGCTAAAGCCAACGACTCTTATTTCCCCGGCGTTGCAGTGGAATAGATTAAAGCTGAAAGCAGCG
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
* *
5120216 AAT-TCCATTTCCTTGGCA
131 AATCT-TATTTCCTTGGCG
* * ** * * * * * *
5120234 TTGCAGAGGAACAAATTAAAGCTGAAGGGTGCAAATCTTATTTCCTTGGCATCGCATTAGATGAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * * * *
5120299 GGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGCAGTTGAACTGATTAAAGTTGAAGACAGCA
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
* *
5120364 AATCTTATTTCGTTGCCG
131 AATCTTATTTCCTTGGCG
** * * * * * *
5120382 -T-CA---GAGTAGATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAGTGGAACAT
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
** * * * *
5120442 ATTAAAGCTGAAGGCAATAAATCTTATTTCCTTGGCGTTGCAGTTGAACTGATTAAAGTTGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
*
5120507 CAGCAAATCTTATTTCGC-TGGCG
126 CAGCGAATCTTATTTC-CTTGGCG
** * * * * * *
5120530 -T-CA---GAGTAGATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAGTGGAACAT
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
** * * *
5120590 ATTAAAGCTGAAGGCAATAAATCTTATTTCCTTGACATTGTAGTAGAACAGATTAAAGCTGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* * *
5120655 CAGCGAATCTTATTTCCCTGTCA
126 CAGCGAATCTTATTTCCTTGGCG
* * * * * ** *
5120678 TCGCAGT-----ATATTCAAGCTGAAGGTAGCGAATCTTTTTTCGTTGGCGTTGCAGTGGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
* * * ** * * * **
5120738 ATTATAGCTGACGGCAGCGAATCCCATTTTCTTGGCATTGCAGTGGATCAAATTAAAATTGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* *
5120803 CAGCAAATCTTATTTCCTTGGCA
126 CAGCGAATCTTATTTCCTTGGCG
* * * * ** * *
5120826 TTGCA-T----TAGATTAAAGCTGAAGGTAGCAAATCTCATTTCTTTGGTGTTGCAGTGGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
* * * * * * *
5120886 ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGTCGCAGT-----TGATTAAAGTTGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* * * *
5120946 CAACAAATTTTATTTCCTTGGAG
126 CAGCGAATCTTATTTCCTTGGCG
* * * * * * * * *
5120969 TTGTAGTAGAACAGATTCAAGCAT-AAGGCACCAAATCTTATTTCCCTGACGTCGCAATAGACTA
1 TTGCAGTGGAACAGATTAAAGC-TGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTA
* * * * * * *
5121033 AAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAGTAGAACAGATTAAAGCTGACGACAGC
65 AAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* *
5121098 GAAT-TACATTTCCTTGGCA
130 GAATCT-TATTTCCTTGGCG
* * * * * * * * * *
5121117 TTACAGTGGAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTTCTTGGCGTCGTATTAGATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * * *
5121182 AGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTAGTAGT-G----GA--AAAGCAGAAGGCAGCA
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
*
5121240 AATCTTATTT-CTCTAGCG
131 AATCTTATTTCCT-TGGCG
** * * * * *
5121258 -T-C-GT--AGTAGATTAAAGCTGAAGGCAACAAACCTCATTTCCCTGGCGTTGCAGTGGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
*** ** * ** * *
5121318 ATTAAAGCTGAA-GCAATGAATCTTATTTCCCCGGC-GT-C-GT--AGTAGATTAAAACAGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* *
5121377 CAGTGAATCTTATTTCGATT-GCG
126 CAGCGAATCTTATTTC-CTTGGCG
* * * ** * * * *
5121400 TTGTAGTGGAACAAATTAAAGCTGAAGGTAGTAAATCTTATTTCCCTAGCGTCACAGCAGATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * *
5121465 AGCTGAAGACAGCAAATCTCT-TTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAATGTAGT
66 AGCTGAAGGCAGCAAATCT-TATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * *
5121529 AAATTTTATTTCCCTGGC-
130 GAATCTTATTTCCTTGGCG
* ** * * * * *
5121547 AT-C-GT--AGTAGATTAAAGCTGAAGGCGGTGAATCTTATTTCCTTAGCGTTGCAGTGGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
* * * * * **
5121608 ATTAAAGCTAAAGGCAACGAATCTTATTTACC-TAG-AGT-C-GT--AGTAGATTAAA-CTTGAA
61 ATTAAAGCTGAAGGCAGCAAATCTTATTT-CCTTGGCATTGCAGTGGAACAGATTAAAGC-TGAA
* * *
5121666 GGCAGCGAATCTCATTTCCCTGGTG
124 GGCAGCGAATCTTATTTCCTTGGCG
* * * *
5121691 TTGCAGT-----AGATTAAAGCTGAAGGAAGCGAATCTTA-TTCCTTTGGCATCACAGTGGAACA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-CTGGCGTCGCAGT-----A
* * * ** * *
5121750 AATTAAAGCTGAAGGCAGCGAATCTCATTTCCCTAAC-GT-C-GT--AATAGATTAAAGCTGAAG
60 AATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAG
* **
5121810 GCATCGAATCTTATTTCCTAAGCG
125 GCAGCGAATCTTATTTCCTTGGCG
* * ** **
5121834 TTGCAGTGGAACAGATTAAACCTGAAGCCAGTAAATCTTATTTCCCTGGCGTCGCAGTAGGTTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * * * *
5121899 AGCTGAATGCAGCGAATCTCATTTTCTTGGCATTGGAGTGGAACAGATTAACGCTAAAGGCAGTG
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
* * *
5121964 AATCTTATATCCCTAGCG
131 AATCTTATTTCCTTGGCG
* * * * * *
5121982 TCGCAGT---A-AG-CTAAAGTTGAAGGCAGAGAATCTTATTTCCTTGGCGTTGCAGTGGAACAT
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
* * * *
5122042 ATTAAAGTTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAACTGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* * *
5122107 TAGCGAA-CTTTATTTCCATGTCG
126 CAGCGAATC-TTATTTCCTTGGCG
* * * * * * * *
5122130 TCGCAGT---A-A-ATTAAAGCTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAATGGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGC-A-GTAA-A-
* * * * * * * * *
5122190 GTTAAAGCTGAAGGCGGCGAATCTCATCTCCTTGCCGTTGTAGTGGAATAGATTAAAGTTGAAGG
62 -TTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
** *
5122255 CAATGAATCTTATTTCCCTGGC-
126 CAGCGAATCTTATTTCCTTGGCG
* * * * * * * * * * *
5122277 --ACA--GCAATAGACTAAAGGTAAAGGCGGTGAATCTTATTTCCTTGGCGTTTCAGTAGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG--TC-GCAGTA-A-
** ** * * * *
5122338 ATTAAAGCTGAAGGCAGTGAATCTTATTTTTTCTGTCATTGCAGTAGAACAGAGTAAAAGCAGAA
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCT-TGGCATTGCAGTGGAACAGA-TTAAAGCTGAA
* * * * *
5122403 GGCAACAAATCTTGTTTCCCTGACG
124 GGCAGCGAATCTTATTTCCTTGGCG
* * * * * *
5122428 TTGCAGT-----AGACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGTCGCAGTGGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
* * * *
5122488 ATTAAAGCTGAAAGCAGCGAAT-TCCATTTCCTTGGCATTGCAGTGGAACAAATTAAAGCTGAAG
61 ATTAAAGCTGAAGGCAGCAAATCT-TATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAG
* *
5122552 GCAGCAAATCTTATTTCCTTGGCA
125 GCAGCGAATCTTATTTCCTTGGCG
* * * * * * * * * *
5122576 TCGCA-T----TAGGTGAAAGCTAAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAACTG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG-T-AA---
* * * *
5122636 ATTAAAGTTGAAGGCAGCAAATCTTATTTCGC-TGGCGTTAG-AGT-----AGATTAAACCTTAA
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTC-CTTGGCATT-GCAGTGGAACAGATTAAAGCTGAA
* *
5122694 GGCAGTGAATCTTATTTCCTTAGCG
124 GGCAGCGAATCTTATTTCCTTGGCG
* *** * * * *
5122719 TTGCAGTGGAACATATTAAAGCTGAAGGCAATAAATCTTATTTCCTTGGCATTGTAGTAGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC---GTCGCAGTA-A-
* * * ** *
5122784 ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCA-T-C-GT--AGTAGATTCAAGCTGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* *
5122844 TAGCGAATCTTATTTCGTTGGCG
126 CAGCGAATCTTATTTCCTTGGCG
* * ** * * * * *
5122867 TTGCAGTGGAACAGATTATAGCTGACGGCAGCGAATCCCATTTTCTTGACATTGCAGTGGATCAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G-T-AA
** * * * *
5122932 ATTAAAATTGAAGGTAGCAAATCTTATTTCCTTGGCGTCGCA-T----TAGATTAAAGCTGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* * * * *
5122992 TAGCAAATCTCATTTCTTTGGTG
126 CAGCGAATCTTATTTCCTTGGCG
* **
5123015 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGTCGCAGTTGATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * * * *
5123080 TGTTGAAGGCAGCAAATTTTATTTCCTTGG-AGTTGTAGTAGAATAGATTAAAGCAGAAGGCACC
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCA-TTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * *
5123144 AAATCTTATTTCCCTGACG
130 GAATCTTATTTCCTTGGCG
* * * * * * * * *
5123163 -T-C---GCAATAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAGTAGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT--AA-A-
* * * * * * *
5123223 GTTAAAGCTGACGACAGCGAAT-TACATTTCCTTGGCATTACAGTGGAACAAATTAAAGCTGAAA
62 -TTAAAGCTGAAGGCAGCAAATCT-TATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAG
* *
5123287 GAAGCAAATCTTATTTCCTTGGCG
125 GCAGCGAATCTTATTTCCTTGGCG
** * * * *
5123311 -T-C-GT--ATTAGATTAAAGTTGAAGGCAGCGAATCTCATTTCCTTGGCGT---AGT-AATGGA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAAT--T
* * * ** *
5123367 AAAGCAGAAGGCAGCAAATCTTATTT-C-T--C-TAGC-GTCGTAGTAGATTAAACCTGAAGGCA
64 AAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGT-GGAACAGATTAAAGCTGAAGGCA
* * * *
5123426 ACAAATCTCATTTCCCTGGCG
128 GCGAATCTTATTTCCTTGGCG
* * *** * * *
5123447 TTGCAGTGGAACAGATTAAAGTTGAAGCCAATAAATCTTATTTCCCTGGCATCGCAGCAGATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * ** * *
5123512 AGCTGAAGGCAGCGAATCTCATTTCCTTAGTGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCG
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
5123577 AATCTTATTTCTCTGCTGGC-
131 AATCTTATTTC-CT--TGGCG
* * * * *
5123597 --GCAGT---A-A-ATTAAAGCTGAAGGAAGTGAATCTTATTTCCTTGGCGTTGTAGTGGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
* * * * * * * *
5123655 ATTAAAGTTAAAGGCAACAAATCTTATTTCCCTGGCGTCGCAGT-----AGATTCAAGTTGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* * * * *
5123715 CAGTGAATCTCATTTCATTTGCA
126 CAGCGAATCTTATTTCCTTGGCG
* * * * * *
5123738 TTGCAGTAGAATAGATTAAAGCTGAATGCAGCAAATCTTATTTCCCTGGCATCGCAGTAGATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * * * * *
5123803 AGATGAAGGCAGCGAGTCTTATTTCCTTAGCGTTGTAGTGGAATAGATTAAAGCAGAAGGCAGTG
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
* *
5123868 AATCTTATTTCCCTAGCG
131 AATCTTATTTCCTTGGCG
* * * * * *** **
5123886 TCGCAGT-----AGGTTAAAGCTGAAGCCAGAGAATCTCATTTTTTTGTAGTCGCAGTGGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
** * * * * * * * *
5123946 ATTAAAGCTGGCGGTAACAAATCTTATTTCCCTAGCGTCGCAGT-----AGATTAAAGCAGGAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* * * * *
5124006 CAACAAAT-TTCATTTCCCTAGCA
126 CAGCGAATCTT-ATTTCCTTGGCG
* * * ** * * *
5124029 TTGTAGTGGAACAGAATAAAGCTGAAGGTAGTAAATATTATTTCCCTAGCGTCGCAGTAGATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * * * * *
5124094 AGCTGAAGGTAACGAATCTCATCTCCTTGGTATTGCAGCGGAACAGATTAAAACTGAAGGCAGCA
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
* *
5124159 AACCTTATTTCCCTGGCG
131 AATCTTATTTCCTTGGCG
* * * * * * *
5124177 TCGCAGT-----AGACTAAAGATAAAGCCAGTGAATCTTATTTCCCTGGCGTTGCAGTGGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
* * * ** * * *
5124237 ATTAAAGCTGATGACAGCGAATCTCCTTTCCTTGGCGTTGTAGTGGAACAAATTAAAGCTGAAGG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGG
* * **
5124302 CAACAAATCTTATTTCCTTAACG
126 CAGCGAATCTTATTTCCTTGGCG
* ** * * * * * * * *
5124325 -T-CA---CATTAGATTAAAGCTAAAGGTAGCAAATCTCATTTCCTTAGTGTTGCAGTGGAACAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
* * * * * *
5124385 ATTAAAG-TAGGAGGCAACAAATCTTATTT-CTCTAGCGTCGCAGT-----AGATTAAAGCTAAA
61 ATTAAAGCT-GAAGGCAGCAAATCTTATTTCCT-TGGCATTGCAGTGGAACAGATTAAAGCTGAA
* * * *
5124443 GGCAG-GAAATATCATTTCCCTGGCA
124 GGCAGCG-AATCTTATTTCCTTGGCG
* * * ** * * *
5124468 TTGCAGTGGAACAAATTAAAGTTAAAGGCAGTAAATTTTATTTCCCTGGCATCGCAGTAGATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * ** * *
5124533 AGCTGCACGTAGCAAATCTTATTTCCTTGGTGTTGCAGTGGAATAGATTAAAGTTGAAGGCAGCG
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
* *
5124598 AATCTTATTTCCCTGGCA
131 AATCTTATTTCCTTGGCG
* * ** ** *
5124616 TCGCAGT-----AGATTAAAGCTGAAGGCAGTGAATCTTATTTCATTTCCGTTGCAGTGGAATAG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A-
* * * * * *
5124676 ATTAAAGCTAAAGGCAGCGAATCTCATTTCCATT-GCATTGCAGTGGAAGAAATTAAAGCTGACG
61 ATTAAAGCTGAAGGCAGCAAATCTTATTTCC-TTGGCATTGCAGTGGAACAGATTAAAGCTGAAG
* * * *
5124740 GCAGCAAATCTTTTTTCCCTAGCG
125 GCAGCGAATCTTATTTCCTTGGCG
* ** * * * * *
5124764 TCGC--T----CTAGATTAAATTTAAAGGCATCGAATCTCATTTCCCTGGCGTTGCACTGGAACA
1 TTGCAGTGGAAC-AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---GTA-A
* * * * * **
5124823 TATTAAAGCTGAAAGAAG-TAATCTTATTTTCC-TGACGTCACAGT-----AGATTAAAGCTGAA
61 -ATTAAAGCTGAAGGCAGCAAATCTTA-TTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAA
* * *
5124881 GGCAGCGAATCTCATTTTCTTGGCA
124 GGCAGCGAATCTTATTTCCTTGGCG
* * * *
5124906 TT-CGAGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTACCTGGCGTCGCAGTAGATTA
1 TTGC-AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTA
* * * ** * *
5124970 AAGTTGAAAGCGGTGAATCTTATTT-CTCTGGC-TTCACAGT-----AGATTAAAGTTGAAGGCA
65 AAGCTGAAGGCAGCAAATCTTATTTCCT-TGGCATT-GCAGTGGAACAGATTAAAGCTGAAGGCA
* * * *
5125028 GTGAATCTCATTTCTTTGGCA
128 GCGAATCTTATTTCCTTGGCG
* ** * *
5125049 TTGTAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCATTGACGTCGCAGTAGATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* * * * * **** * * * * * *
5125114 AGCTAAAGGAAACGAATCTTATTTTCTTAATTTTGCAGTAGAACAAATTAAAGTTGAAGCCAACA
66 AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
* *
5125179 AATATTATTT-CTCTGTCG
131 AATCTTATTTCCT-TGGCG
* * * ** * * *
5125197 TCT-TAGT-----AGATTAAAACTAAAGGCAGCGAATCACATTTCCTTGGCATTGCAGTGGAACA
1 T-TGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT---A-A
* * * * *
5125256 GATTAACA-CTGAAGGCAGCGAATCTTATTTCCCTAGCATCGCAGT-----AGACTAAAGCTGAA
61 -ATTAA-AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAA
* * * *
5125315 GGCGGAGAATGTTATTTCCATGGCG
124 GGCAGCGAATCTTATTTCCTTGGCG
* ** * *
5125340 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGTGAATCTTATTTCCCTTACATCGTAGTAAATTAA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
* ** * * * *
5125405 AGTTGAAGGCAGTGAATCTTACTTT-CTGGGCAATACAGTGGAACAGTTTAAAGCTGAAGGCAGC
66 AGCTGAAGGCAGCAAATCTTA-TTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
5125469 GAATCTTATTTCCTTGGCG
130 GAATCTTATTTCCTTGGCG
* * * *
5125488 TCGCAGT-----AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCGTTGCAGT
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGT
5125541 GGGATGGTTT
Statistics
Matches: 5960, Mismatches: 1437, Indels: 797
0.73 0.18 0.10
Matches are distributed among these distances:
135 2 0.00
136 105 0.02
137 5 0.00
138 6 0.00
139 10 0.00
140 57 0.01
141 189 0.03
142 151 0.03
143 1374 0.23
144 44 0.01
145 43 0.01
146 77 0.01
147 167 0.03
148 3533 0.59
149 82 0.01
150 101 0.02
151 12 0.00
153 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (148 bp):
TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAGTAAATTAA
AGCTGAAGGCAGCAAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
AATCTTATTTCCTTGGCG
Found at i:5119007 original size:44 final size:45
Alignment explanation
Indices: 5118903--5119149 Score: 160
Period size: 46 Copynumber: 5.3 Consensus size: 45
5118893 AGCTAAAAGA
* *
5118903 AGCAAATCTTATTTCCTTGGCGTCGTATTAGATTAAAACTGAAGGC
1 AGCAAATCTTATTTCCTTGGCGTCGTAGTAGA-TAAAACAGAAGGC
* * *
5118949 AGCAAATCTCATTTCCTTGGCGTAC-TAGTGGA-AAAGCAGAAGGC
1 AGCAAATCTTATTTCCTTGGCGT-CGTAGTAGATAAAACAGAAGGC
* * * *
5118993 AGCAAATCTTATTT-CTCTAGCATCGTAGTAGATTAAAGCTGAAGGC
1 AGCAAATCTTATTTCCT-TGGCGTCGTAGTAGA-TAAAACAGAAGGC
* * * ** * *
5119039 AACAAATCTCATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAA-GC
1 AGCAAATCTTATTTCCTTGGCG-T-C-GT--AGTAGA-TAAAACAGAAGGC
** * * *
5119089 AGTGAATTTTATTTCCCTGGCGTCGTAGTAGATTAAAACTGAAGGC
1 AGCAAATCTTATTTCCTTGGCGTCGTAGTAGA-TAAAACAGAAGGC
**
5119135 AGTGAATCTTATTTC
1 AGCAAATCTTATTTC
5119150 GATTGCGTTG
Statistics
Matches: 163, Mismatches: 26, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
43 3 0.02
44 33 0.20
45 14 0.09
46 69 0.42
47 5 0.03
48 2 0.01
49 3 0.02
50 19 0.12
51 15 0.09
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (45 bp):
AGCAAATCTTATTTCCTTGGCGTCGTAGTAGATAAAACAGAAGGC
Found at i:5121293 original size:90 final size:90
Alignment explanation
Indices: 5121146--5121314 Score: 250
Period size: 90 Copynumber: 1.9 Consensus size: 90
5121136 AGCTGAAAGA
* * * * * *
5121146 AGCAAATCTTATTTTCTTGGCGTCGTATTAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTG
1 AGCAAATCTTATTTTCTTAGCGTCGTAGTAGATTAAAGCTGAAGGCAACAAACCTCATTTCCCTG
*
5121211 GCGTAGTAGTGGAAAAGCAGAAGGC
66 GCGTAGCAGTGGAAAAGCAGAAGGC
5121236 AGCAAATCTTA-TTTCTCTAGCGTCGTAGTAGATTAAAGCTGAAGGCAACAAACCTCATTTCCCT
1 AGCAAATCTTATTTTCT-TAGCGTCGTAGTAGATTAAAGCTGAAGGCAACAAACCTCATTTCCCT
*
5121300 GGCGTTGCAGTGGAA
65 GGCGTAGCAGTGGAA
5121315 CAGATTAAAG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
89 5 0.07
90 65 0.93
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (90 bp):
AGCAAATCTTATTTTCTTAGCGTCGTAGTAGATTAAAGCTGAAGGCAACAAACCTCATTTCCCTG
GCGTAGCAGTGGAAAAGCAGAAGGC
Found at i:5121704 original size:240 final size:240
Alignment explanation
Indices: 5121414--5121922 Score: 603
Period size: 240 Copynumber: 2.1 Consensus size: 240
5121404 AGTGGAACAA
* ** * * * ** *
5121414 ATTAAAGCTGAAGGTAGTAAATCTTATTTCCCTAGCGTCACAGCAGATTAAAGCTGAA-GACAGC
1 ATTAAAGCTGAAGGCAGCGAATCTCATTTCCCTGGTGTTGCAGTAGATTAAAGCTGAAGGA-AGC
* ** * * * * * *
5121478 AAATCTCTTTTCC-CTGGCATTGCAGTGGAACAGATTAAAGCTGAATGTAGTAAATTTTATTTCC
65 AAATCT-TATTCCTCTGGCATCACAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTCATTTCC
** * * *
5121542 CTGGCATCGTAGTAGATTAAAGCTGAAGGCGGT-GAATCTTATTTCCTTAGCGTTGCAGTGGAAC
129 CTAACATCGTAATAGATTAAAGCTGAAGGC-ATCGAATCTTATTTCCTAAGCGTTGCAGTGGAAC
* * * *
5121606 AGATTAAAGCTAAAGGCAACGAATCTTATTTACCTAGAGTCGTAGTAG
193 AGATTAAACCTAAAGCCAACAAATCTTATTTACCTAGAGTCGCAGTAG
5121654 ATTAAA-CTTGAAGGCAGCGAATCTCATTTCCCTGGTGTTGCAGTAGATTAAAGCTGAAGGAAGC
1 ATTAAAGC-TGAAGGCAGCGAATCTCATTTCCCTGGTGTTGCAGTAGATTAAAGCTGAAGGAAGC
* * *
5121718 GAATCTTATTCCTTTGGCATCACAGTGGAACAAATTAAAGCTGAAGGCAGCGAATCTCATTTCCC
65 AAATCTTATTCCTCTGGCATCACAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTCATTTCCC
*
5121783 TAACGTCGTAATAGATTAAAGCTGAAGGCATCGAATCTTATTTCCTAAGCGTTGCAGTGGAACAG
130 TAACATCGTAATAGATTAAAGCTGAAGGCATCGAATCTTATTTCCTAAGCGTTGCAGTGGAACAG
* ** * * *
5121848 ATTAAACCTGAAGCCAGTAAATCTTATTTCCCTGGCGTCGCAGTAG
195 ATTAAACCTAAAGCCAACAAATCTTATTTACCTAGAGTCGCAGTAG
* *
5121894 GTTAAAGCTGAATGCAGCGAATCTCATTT
1 ATTAAAGCTGAAGGCAGCGAATCTCATTT
5121923 TCTTGGCATT
Statistics
Matches: 225, Mismatches: 39, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
239 7 0.03
240 215 0.96
241 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (240 bp):
ATTAAAGCTGAAGGCAGCGAATCTCATTTCCCTGGTGTTGCAGTAGATTAAAGCTGAAGGAAGCA
AATCTTATTCCTCTGGCATCACAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTCATTTCCCT
AACATCGTAATAGATTAAAGCTGAAGGCATCGAATCTTATTTCCTAAGCGTTGCAGTGGAACAGA
TTAAACCTAAAGCCAACAAATCTTATTTACCTAGAGTCGCAGTAG
Found at i:5122730 original size:245 final size:246
Alignment explanation
Indices: 5117711--5125137 Score: 2027
Period size: 245 Copynumber: 30.5 Consensus size: 246
5117701 AGTGGAACAT
* * * * * * * *
5117711 ATTAAAGTTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAACTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * * ** * * *
5117776 TAGCGAA-CTTTATTTCCATGTCGTCACAGTAAATTAAAGTTGAAGGTAGCAAATCTTATTTCCT
66 CAGCAAATC-TTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCCT
* * * * * * * * *
5117840 TAGCATTGCAATGGAACAGGTTAAAGCTGAAGGCGGCG-AATCTCATCTCCTTGCCGTTGTAGTG
130 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGCAGTG
* * * *
5117904 GAACAGATTAAAGCTGAAGGCAAG-GAATCTTATTTCCCTGGCACCGCAATAG
195 GAACAAATTAAAGCTGAAGGC-AGCAAATCTTATTTCCCTGGCATCGCATTAG
* * * * ** * * * *
5117956 ACTAAAGGTAAAGGCGGTGAATCTTACTTCCTTGGCGTT-TCAGTAGAATAGATTAAAGCTGAAG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGT-AGTTGAATAGATTAAAGCAGAAG
* * * * * *
5118020 GCAGCGAATCTTATTTCCCT-GCTGTTGCAGTAGAACAGAGTAAAGC-AGAAGGCAACAAATCTT
65 GCAGCAAATCTTATTTCCCTGGC-GTCGCAGT-----AGATTAAACCTA-AAGGCAGCGAATCTT
* * * * * * * * * ** *
5118083 ATTTCCCTGACGTCGCAGT-----AGACTAAAGCTAAAGCCAACG-ACTCTTATTTCCCCGGCGT
123 ATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCAT
* * * * * * * *
5118142 TGCAGTGGAACAGATTAAAGCTGAAAGCAGCGAAT-TCCATTTCCTTGGCATTGCAGTGGAACAA
188 TGCAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCT-TATTTCCCTGGCATCGCA-T----TAG
* * * * * * *
5118206 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATCGCA--T---TAGGTGAAAGCTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * ** * *
5118266 CAGCAAATCTCATTTCCTTGGCGTTGCAGTTGAACTGATTAAAGTTGAAGGCAGCAAATCTTATT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAG-T--A--GATTAAACCTAAAGGCAGCGAATCTTATT
** * * * * * *
5118331 TCGC-TGGCG-T-CA---GAGTAGATTAAAACTTAAGGCAGTG-AATCTTATTTCCTTAGCGTTG
126 TC-CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTG
* ** * * * * *
5118389 CAGTGGAACATATTAAAGCTGAAGGCAATAAATATTATTTCCTTGGCATTGTAGTAGAACAG
190 CAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCA-T----TAG
* * * * * * * * *
5118451 ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCATCGCA---G--TAGATTCAAGCTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * ** * * ** * * **
5118511 TAGCGAATCTTATTTCGTTGGCGTTGCAGTGGAACAGATTATAGTTGACGGCAGCGAATCCCATT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGT-----AGATTAAACCTAAAGGCAGCGAATCTTATT
* * * * ** * * **
5118576 TTCTTGGCATTGCAGTGGATCAAATTAAAATTGAAGGTA--G------CATTTCTTTGGTGTTGC
126 TCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGC
* ** * * *
5118633 AGTGGAACAGATTAAAGCTGAAGGCAGGGAATCTTATTTCCCTGTCGTCACAGTT-G
191 AGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCA-TTAG
* * * * * * * *
5118689 ATTAAAGTTGAAGGCAGCAAATTTTATTTCCTTGGAGTTGTAGTAGAACAGATTCAAGCGGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * *
5118754 CACCAAATCTTATTTCCCTGACGTCGCAATAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCCTT
* * * * * *
5118819 AGCATTGCAGTAGAACAGATTAAAGCTGACGACAGCG-AAT-TACATTTCCTTGGCATTACAGTG
131 GGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCT-CATTTCCTTGGCATTGCAGTG
* * * * * *
5118882 GAACAAATTAAAGCTAAAAGAAGCAAATCTTATTTCCTTGGCGTCGTATTAG
195 GAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCATTAG
* **
5118934 ATTAAAACTGAAGGCAGCAAATCTCATTTCCTTGGCGTACTAG-TG----GA--AAAGCAGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * * * * * *
5118992 CAGCAAATCTTATTTCTCTAGCATCGTAGTAGATTAAAGCTGAAGGCAACAAATCTCATTTCCCT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCCTT
* * * * *
5119057 GGCGTTGCAGTGGAACAGATTAAAGCTGAA-GCAGTG-AATTTTATTTCCCTGGC-GT-C-GT--
131 GGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGCAGTGG
** * * ** ** * * * * * *
5119115 AGTAGATTAAAACTGAAGGCAGTGAATCTTATTTCGATTGCGTTGTAGTGGAACAA
196 AACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCA-T----TAG
* * * * * * * ** *
5119171 ATTAAAGCTGAAGGTAGTAAATCTTATTTCCCTAGCG-T-CA---CAGCAGATTAAAGCTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * * **
5119231 CAGCAAATCTCT-TTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAATGTAGTAAATCTTAT
66 CAGCAAATCT-TATTTCCCTGGCGTCGCAGT-----AGATTAAACCTAAAGGCAGCGAATCTTAT
* * ** * * * * * *
5119295 TTCCCTGGC-AT-C-GT--AGTAGATTAAAGCTGAAGGCGGTG-AATCTTATTTCCTTAGCGTTA
125 TTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTG
* * * * * *
5119354 CAGTGGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACCTGG-AGTCGTAGTAG
190 CAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCA-TCGCATTAG
* * * *
5119411 ATTAAA-CTTGACGGCAGCGAATCTCATTTTCC---G-G--GTA-TTGCAGTAGATTAAAGCTGA
1 ATTAAAGC-TGAAGGCAGCAAATCTCA-TTTCCTTGGCGTTGTAGTTG-AATAGATTAAAGCAGA
* * * * * * * *
5119468 AGGAAGCGAATCTTA-TTCCTTTGGCATCACAGTGGAATAGATTAAAGCTGAAGGCATCGAATCT
63 AGGCAGCAAATCTTATTTCC-CTGGCGTCGCA---G--TAGATTAAACCTAAAGGCAGCGAATCT
** * * * * * * *
5119532 TATTTCCTAAGCGTTGCAGTGGAACAGATTAAACCTGAAGCCAGTG-AATCTTATTTCCCTAGCG
122 TATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCA
* * * * * * * *
5119596 TCGCAGTAGG------TTAAAGCTGAATGCAGCGAATCTCATTTTCTTGGCATTGCAGTGGAACA
187 TTGCAGT-GGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCA-T----TA
*
5119655 A
246 G
* * ** * * * * * * **
5119656 ATTAAGGCTAAAGGCAGTGAATCTTATATCCCTAGCGTCGCAG-T--A-AGCA--AAAGTTGAAG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAG-ATTAAAGCAGAAG
* * * ** * **
5119715 GCAG-AGAATCTTATTTCCTTGGCGTTGCAGTGGAACATATTAAAGTTGAAGGCAGTAAATCTTA
65 GCAGCA-AATCTTATTTCCCTGGCGTCGCAGT-----AGATTAAACCTAAAGGCAGCGAATCTTA
* * * * * * * *
5119779 TTTCCTTGGCGTTGCAGTGGAACAGATTAAAACTGAAGGTAGCGAACT-TTATTTCCATGTCGTC
124 TTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATT
* * * * * * *
5119843 ACAGT-----AAATTAAAGTTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAATGGAACAG
189 GCAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGC-AT----TAG
* * * * * * * *
5119901 GTTAAAGCTGAAGGCGGCGAATCTCATCTCCTTGCCGTTGTAGTGGAACAGATTAAAGCTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* ** * * * * * *
5119966 CAAG-GAATCTTATTTCCCTGGCACCGCAATAGACTAAAGCTAAAGACGGTGAATCTTATTTCCT
66 C-AGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCCT
* * * * * * *
5120030 TGGCGTTTCAGTAGAACAGATTAAAGCTGAAGGCAGCG-AATCTTATTTCCCTGCCGTTGCAGTA
130 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGCAGTG
* * * * * * *
5120094 GAACAGAGTAAAGCAGAAGGCAACAAATCTTATTTCCCTGACGTCGCAGTAG
195 GAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCATTAG
* * * * * * * ** * * * *
5120146 ACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGTTGCAGTGGAATAGATTAAAGCTGAAAG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * * * ** *
5120211 CAGCGAAT-TCCATTTCCTTGGCATTGCAG-AGGAACAAATTAAAGCTGAAGGGTGCAAATCTTA
66 CAGCAAATCT-TATTTCCCTGGCGTCGCAGTA-G-----ATTAAACCTAAAGGCAGCGAATCTTA
* * * * * *
5120274 TTTCCTTGGCATCGCA-T----TAGATGAAGGCTGAAGGCAGC-AAATCTCATTTCCTTGGCGTT
124 TTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATT
* ** * * ** * * *
5120333 GCAGTTGAACTGATTAAAGTTGAAGACAGCAAATCTTATTTCGTTGCCGTCAG-AGTAG
189 GCAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATC-GCATTAG
* * ** * * * * * * *
5120391 ATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAGTGGAACATATTAAAGCTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
** * * ** * *
5120456 CAATAAATCTTATTTCCTTGGCGTTGCAGTTGAACTGATTAAAGTTGAAGGCAGCAAATCTTATT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAG-T--A--GATTAAACCTAAAGGCAGCGAATCTTATT
** * * * * * *
5120521 TCGC-TGGCG-T-CA---GAGTAGATTAAACCTTAAGGCAGTG-AATCTTATTTCCTTAGCGTTG
126 TC-CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTG
* ** * * * * *
5120579 CAGTGGAACATATTAAAGCTGAAGGCAATAAATCTTATTTCCTTGACATTGTAGTAGAACAG
190 CAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCA-T----TAG
* * * * * * * * *
5120641 ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCATCGCAG-T--AT--ATTCAAGCTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * ** * * * * * **
5120701 TAGCGAATCTTTTTTCGTTGGCGTTGCAGTGGAACAGATTATAGCTGACGGCAGCGAATCCCATT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGT-----AGATTAAACCTAAAGGCAGCGAATCTTATT
* * * * ** *
5120766 TTCTTGGCATTGCAGTGGATCAAATTAAAATTGAAGGCAGC-AAATCTTATTTCCTTGGCATTGC
126 TCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGC
* * * * ** ** * *
5120830 A-T----TAGATTAAAGCTGAAGGTAGCAAATCTCATTTCTTTGGTGTTGCAGTGGAACAG
191 AGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCA-T----TAG
* * * * * * **
5120886 ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGTCGCAG-T---T-GATTAAAGTTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * * * * * *
5120946 CAACAAATTTTATTTCCTTGGAGTTGTAGTAGAACAGATTCAAGC-ATAAGGCACCAAATCTTAT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGT-----AGATTAAACCTA-AAGGCAGCGAATCTTAT
* * * * * * * * *
5121010 TTCCCTGACG-T-C---GCAATAGACTAAAGCTAAAGCCAGCG-AATCTTATTTCCTTAGCATTG
125 TTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTG
* * * * * * * * ** *
5121069 CAGTAGAACAGATTAAAGCTGACGACAGCGAAT-TACATTTCCTTGGCATTACAGTGGAACAA
190 CAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCT-TATTTCCCTGGCA-T-C---GCATTAG
* * * * * *
5121131 ATTAAAGCTGAAAGAAGCAAATCTTATTTTCTTGGCGTCGTA--T---TAGATTAAAGCTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * * * *
5121191 CAGCGAATCTCATTTCCTTGGCGTAGTAGTGGA--AAAGC-AGAAGGCAGCAAATCTTATTT-CT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTA-AAGGCAGCGAATCTTATTTCCT
* ** * * * *
5121252 CTAGCG-T-C-GT--AGTAGATTAAAGCTGAAGGCAAC-AAACCTCATTTCCCTGGCGTTGCAGT
130 -TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGCAGT
* *** * * * *
5121311 GGAACAGATTAAAGCTGAA-GCAATGAATCTTATTTCCCCGGCGTCGTAGTAG
194 GGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCATTAG
* * ** * * * * * *
5121363 ATTAAAACAGAAGGCAGTGAATCTTATTTCGATT-GCGTTGTAGTGGAACAAATTAAAGCTGAAG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTC-CTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAG
* * * * * * * * *
5121427 GTAGTAAATCTTATTTCCCTAGCGTCACAGCAGATTAAAGCTGAAGACAGCAAATCTCT-TTTCC
65 GCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCT-TATTTCC
* * * * * * * *
5121491 CTGGCATTGCAGTGGAACAGATTAAAGCTGAATGTAG-TAAATTTTATTTCCCTGGCA-T-C-GT
129 TTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGCAGT
** * * ** * * * * *
5121552 --AGTAGATTAAAGCTGAAGGCGGTGAATCTTATTTCCTTAGCGTTGCAGTGGAACAG
194 GGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCA-T----TAG
* * * * * * * *
5121608 ATTAAAGCTAAAGGCAACGAATCTTATTTACC-TAGAGTCGTA---G--TAGATTAAA-CTTGAA
1 ATTAAAGCTGAAGGCAGCAAATCTCATTT-CCTTGGCGTTGTAGTTGAATAGATTAAAGC-AGAA
* * * * * * *
5121666 GGCAGCGAATCTCATTTCCCTGGTGTTGCAGTAGATTAAAGCTGAAGGAAGCGAATCTTA-TTCC
64 GGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCC
* ** * * ** *
5121730 TTTGGCATCACAGTGGAACAAATTAAAGCTGAAGGCAGCG-AATCTCATTTCCCTAAC-GT-C-G
129 -TTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGCAG
* * * * * * **
5121791 T--AATAGATTAAAGCTGAAGGCATCGAATCTTATTTCCTAAGCGTTGCAGT-GGAACAG
193 TGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCC----C-TGGCA-TCGCATTAG
* * * * * * * * * *
5121848 ATTAAACCTGAAGCCAGTAAATCTTATTTCCCTGGCGTCGCA---G--TAGGTTAAAGCTGAATG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * * * *
5121908 CAGCGAATCTCATTTTCTTGGCATTGGAGTGGAACAGATT-AACGCTAAAGGCAGTGAATCTTAT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGT-----AGATTAAAC-CTAAAGGCAGCGAATCTTAT
* * * * * * * * *
5121972 ATCCCTAGCGTCGCAGT---A-AG-CTAAAGTTGAAGGCAGAG-AATCTTATTTCCTTGGCGTTG
125 TTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTG
* * * * * * *
5122031 CAGTGGAACATATTAAAGTTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAGTGGAACAG
190 CAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCA-T----TAG
* * * * * * * * *
5122093 ATTAAAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCGCAG-T--A-A-ATTAAAGCTGAAG
1 ATTAAAGCTGAAGGCAGCAAATC-TCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAG
* * * * * * * * * * *
5122152 GTAGCAAATCTTATTTCCTTAGCATTGCAATGGAACAGGTTAAAGCTGAAGGCGGCGAATCTCAT
65 GCAGCAAATCTTATTTCCCTGGCGTCGC-A--G--TAGATTAAACCTAAAGGCAGCGAATCTTAT
* * * * * ** * *
5122217 CTCCTTGCCGTTGTAGTGGAATAGATTAAAGTTGAAGGCAATG-AATCTTATTTCCCTGGCA---
125 TTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTG
* * * * * * * ** * * * **
5122278 CA--GCAATAGACTAAAGGTAAAGGCGGTGAATCTTATTTCCTTGGCGTTTCAGTAGAACAG
190 CAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGC--ATC-G--CATTAG
** * ** * * * * * *
5122338 ATTAAAGCTGAAGGCAGTGAATCTTATTTTTTCTGTCATTGCAGTAGAACAGAGTAAAAGCAGAA
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCT-TGGCGTTGTAGTTGAATAGA-TTAAAGCAGAA
* * * * * * * * *
5122403 GGCAACAAATCTTGTTTCCCTGACGTTGCAGTAGACTAAAGCTAAAGCCAACGACTCTTATTTCC
64 GGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCC
** * * *
5122468 CCGGCGTCGCAGTGGAACAGATTAAAGCTGAAAGCAGCGAATTC-CATTTCCTTGGCATTGCAGT
129 TTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGCAGT
*
5122532 GGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATCGCATTAG
194 GGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCATTAG
* * * **
5122585 GTGAAAGCTAAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAACT-GATTAAAGTTGAAG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAA-TAGATTAAAGCAGAAG
* * * *
5122649 GCAGCAAATCTTATTTCGCTGGCGTTAG-AGTAGATTAAACCTTAAGGCAGTGAATCTTATTTCC
65 GCAGCAAATCTTATTTCCCTGGCG-TCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCC
* * ** * *
5122713 TTAGCGTTGCAGTGGAACATATTAAAGCTGAAGGCA-ATAAATCTTATTTCCTTGGCATTGTAGT
129 TTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGCAGT
* * * * * *
5122777 AGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCATCGTAGTAG
194 GGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCATTAG
* * * * * * * * * * *
5122830 ATTCAAGCTGAAGGTAGCGAATCTTATTTCGTTGGCGTTGCAGTGGAACAGATTATAGCTGACGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* ** * * * * * * ** * * *
5122895 CAGCGAATCCCATTTTCTTGACATTGCAGTGGATCAAATTAAAATTGAAGGTAGCAAATCTTATT
66 CAGCAAATCTTATTTCCCTGGCGTCGCA---G-T-AGATTAAACCTAAAGGCAGCGAATCTTATT
* * * * **
5122960 TCCTTGGCGTCGCA-T----TAGATTAAAGCTGAAGGTAGC-AAATCTCATTTCTTTGGTGTTGC
126 TCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGC
* * * *
5123019 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGTCGCAGTT-G
191 AGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCA-TTAG
* * * * * *
5123075 ATTAATGTTGAAGGCAGCAAATTTTATTTCCTTGGAGTTGTAGTAGAATAGATTAAAGCAGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * *
5123140 CACCAAATCTTATTTCCCTGACGTCGCAATAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCCTT
* * * * * * *
5123205 AGCATTGCAGTAGAACAGGTTAAAGCTGACGACAGCG-AAT-TACATTTCCTTGGCATTACAGTG
131 GGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCT-CATTTCCTTGGCATTGCAGTG
* * * * *
5123268 GAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTCCTTGGCGTCGTATTAG
195 GAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCATTAG
* * *
5123320 ATTAAAGTTGAAGGCAGCGAATCTCATTTCCTTGGC---GTAG-T-AATGGA--AAAGCAGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * * * *
5123378 CAGCAAATCTTATTTCTCTAGCGTCGTAGTAGATTAAACCTGAAGGCAACAAATCTCATTTCCCT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCCTT
* * ** * * *
5123443 GGCGTTGCAGTGGAACAGATTAAAGTTGAAGCCA-ATAAATCTTATTTCCCTGGCATCGCA---G
131 GGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGCAGTGG
* * * * * **
5123504 --CAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTAGTGTTGCAGT-GGAACAG
196 AACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCC---CTG--GCA-TCGCATTAG
* * * * * *
5123558 ATTAAAGCTAAAGGTAGCGAATCTTATTTCTCTGCTGGC---GCAG-T--A-A-ATTAAAGCTGA
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTC-CT--TGGCGTTGTAGTTGAATAGATTAAAGCAGA
* ** * * * ** * *
5123615 AGGAAGTGAATCTTATTTCCTTGGCGTTGTAGTGGAACAGATTAAAGTTAAAGGCAACAAATCTT
63 AGGCAGCAAATCTTATTTCCCTGGCGTCGCAGT-----AGATTAAACCTAAAGGCAGCGAATCTT
* * * * * * *
5123680 ATTTCCCTGGCGTCGCAGT-----AGATTCAAGTTGAAGGCAGTG-AATCTCATTTCATTTGCAT
123 ATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCAT
* * * * *
5123739 TGCAGTAGAATAGATTAAAGCTGAATGCAGCAAATCTTATTTCCCTGGCATCGCAGTAG
188 TGCAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCATTAG
* * * * * *
5123798 ATTAAAGATGAAGGCAGCGAGTCTTATTTCCTTAGCGTTGTAGTGGAATAGATTAAAGCAGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
** * * * * * * * **
5123863 CAGTGAATCTTATTTCCCTAGCGTCGCAGTAGGTTAAAGCTGAAGCCAGAGAATCTCATTTTTTT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCCTT
** * ** * * * * * * *
5123928 GTAGTCGCAGTGGAACAGATTAAAGCTGGCGGTAAC-AAATCTTATTTCCCTAGCGTCGCAGT--
131 GGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGCAGTGG
* * * * * * * *
5123990 ---AGATTAAAGCAGGAGGCAACAAAT-TTCATTTCCCTAGCATTGTAGTGGAACAG
196 AACAAATTAAAGCTGAAGGCAGCAAATCTT-ATTTCCCTGGCATCGCA-T----TAG
* * * * * * * * * *
5124043 AATAAAGCTGAAGGTAGTAAATATTATTTCCCTAGCGTCGCA---G--TAGATTAAAGCTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * * ** ** * * * *
5124103 TAACGAATCTCATCTCCTTGGTATTGCAGCGGAACAGATTAAAACTGAAGGCAGCAAACCTTATT
66 CAGCAAATCTTATTTCCCTGG-CGT-C-GC--AGTAGATTAAACCTAAAGGCAGCGAATCTTATT
* * * * * * * * * *
5124168 TCCCTGGCGTCGCAGT-----AGACTAAAGATAAAGCCAGTG-AATCTTATTTCCCTGGCGTTGC
126 TCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGC
* * * * ** * * * * * *
5124227 AGTGGAACAGATTAAAGCTGATGACAGCGAATCTCCTTTCCTTGGCGTTGTAGTGGAACAA
191 AGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCA-T----TAG
* * ** * * *
5124288 ATTAAAGCTGAAGGCAACAAATCTTATTTCCTTAACG-T-CA---CATTAGATTAAAGCTA-AAG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGC-AGAAG
* * * * * * * * * *
5124347 GTAGCAAATCTCATTTCCTTAGTGTTGCAGTGGAACAGATTAAA-GTAGGAGGCAACAAATCTTA
65 GCAGCAAATCTTATTTCCCTGGCGTCGCAGT-----AGATTAAACCTA-AAGGCAGCGAATCTTA
* * * * *
5124411 TTT-CTCTAGCGTCGCAGT-----AGATTAAAGCTAAAGGCAG-GAAATATCATTTCCCTGGCAT
124 TTTCCT-TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCAT
* * * * *
5124469 TGCAGTGGAACAAATTAAAGTTAAAGGCAGTAAATTTTATTTCCCTGGCATCGCAGTAG
188 TGCAGTGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCATTAG
* * * * * * * **
5124528 ATTAAAGCTGCACGTAGCAAATCTTATTTCCTTGGTGTTGCAGTGGAATAGATTAAAGTTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * *
5124593 CAGCGAATCTTATTTCCCTGGCATCGCAGTAGATTAAAGCTGAAGGCAGTGAATCTTATTTCATT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCCTT
** * *
5124658 TCCGTTGCAGTGGAATAGATTAAAGCTAAAGGCAGCG-AATCTCATTTCCATT-GCATTGCAGTG
131 GGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCC-TTGGCATTGCAGTG
* * * * *
5124721 GAAGAAATTAAAGCTGACGGCAGCAAATCTTTTTTCCCTAGCGTCGC-TCTAG
195 GAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCAT-TAG
** * * * * * * * * * * *
5124773 ATTAAATTTAAAGGCATCGAATCTCATTTCCCTGGCGTTGCACTGGAACATATTAAAGCTGAAAG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* * * * * * * * *
5124838 AAG-TAATCTTATTTTCCTGACGTCACAGTAGATTAAAGCTGAAGGCAGCGAATCTCATTTTCTT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCCTT
* * * * * *
5124902 GGCATT-CGAGTGGAACAGATTAAAGCTAAAGGAAGCG-AATCTTATTTACC-TGGCGTCGCAGT
131 GGCGTTGC-AGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTT-CCTTGGCATTGCAGT
* * * * ** * * * *
5124964 -----AGATTAAAGTTGAAAGCGGTGAATCTTATTTCTCTGGCTTCACAGTAG
194 GGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCATTAG
* ** * * * * *
5125012 ATTAAAGTTGAAGGCAGTGAATCTCATTTCTTTGGCATTGTAGTGGAACAGATTAAAGCTGAAGG
1 ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
* ** * * * *
5125077 CAGCGAATCTTATTTCATTGACGTCGCAGTAGATTAAAGCTAAAGGAAACGAATCTTATTT
66 CAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTT
5125138 TCTTAATTTT
Statistics
Matches: 5446, Mismatches: 1345, Indels: 787
0.72 0.18 0.10
Matches are distributed among these distances:
232 67 0.01
233 32 0.01
234 2 0.00
235 4 0.00
236 4 0.00
237 109 0.02
238 396 0.07
239 202 0.04
240 832 0.15
241 32 0.01
242 22 0.00
243 116 0.02
244 209 0.04
245 2831 0.52
246 63 0.01
247 103 0.02
248 11 0.00
249 13 0.00
250 329 0.06
251 4 0.00
252 65 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (246 bp):
ATTAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGTAGTTGAATAGATTAAAGCAGAAGG
CAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAACCTAAAGGCAGCGAATCTTATTTCCTT
GGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAATCTCATTTCCTTGGCATTGCAGTGG
AACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATCGCATTAG
Found at i:5123457 original size:90 final size:90
Alignment explanation
Indices: 5123289--5123457 Score: 232
Period size: 90 Copynumber: 1.9 Consensus size: 90
5123279 AGCTGAAAGA
* * ** * * *
5123289 AGCAAATCTTATTTCCTTGGCGTCGTATTAGATTAAAGTTGAAGGCAGCGAATCTCATTTCCTTG
1 AGCAAATCTTATTTCCTTAGCGTCGTAGTAGATTAAACCTGAAGGCAACAAATCTCATTTCCCTG
*
5123354 GCGTAGTAATGGAAAAGCAGAAGGC
66 GCGTAGCAATGGAAAAGCAGAAGGC
5123379 AGCAAATCTTATTT-CTCTAGCGTCGTAGTAGATTAAACCTGAAGGCAACAAATCTCATTTCCCT
1 AGCAAATCTTATTTCCT-TAGCGTCGTAGTAGATTAAACCTGAAGGCAACAAATCTCATTTCCCT
* *
5123443 GGCGTTGCAGTGGAA
65 GGCGTAGCAATGGAA
5123458 CAGATTAAAG
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
89 2 0.03
90 66 0.97
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (90 bp):
AGCAAATCTTATTTCCTTAGCGTCGTAGTAGATTAAACCTGAAGGCAACAAATCTCATTTCCCTG
GCGTAGCAATGGAAAAGCAGAAGGC
Found at i:5125024 original size:143 final size:142
Alignment explanation
Indices: 5124824--5125139 Score: 419
Period size: 143 Copynumber: 2.2 Consensus size: 142
5124814 ACTGGAACAT
5124824 ATTAAAGCTGAAAGAAGTAATCTTATTTTCCTGACGTCACAGTAGATTAAAGCTGAAGGCAGCGA
1 ATTAAAGCTGAAAGAAGTAATCTTATTTTCCTGACGTCACAGTAGATTAAAGCTGAAGGCAGCGA
5124889 ATCTCATTT-TCTTGGCATTCG-AGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTT-AC
66 ATCTCATTTCT-TTGGCATT-GTAGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTCA-
*
5124951 CTGGCGTCGCAGTAG
128 CTGACGTCGCAGTAG
* ** * * * *
5124966 ATTAAAGTTGAAAGCGGTGAATCTTA-TTTCTCTGGCTTCACAGTAGATTAAAGTTGAAGGCAGT
1 ATTAAAGCTGAAAGAAGT-AATCTTATTTTC-CTGACGTCACAGTAGATTAAAGCTGAAGGCAGC
* * *
5125030 GAATCTCATTTCTTTGGCATTGTAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCAT
64 GAATCTCATTTCTTTGGCATTGTAGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTCAC
5125095 TGACGTCGCAGTAG
129 TGACGTCGCAGTAG
5125109 ATTAAAGCT-AAAGGAAACG-AATCTTATTTTC
1 ATTAAAGCTGAAA-G-AA-GTAATCTTATTTTC
5125140 TTAATTTTGC
Statistics
Matches: 151, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
142 23 0.15
143 121 0.80
144 6 0.04
145 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (142 bp):
ATTAAAGCTGAAAGAAGTAATCTTATTTTCCTGACGTCACAGTAGATTAAAGCTGAAGGCAGCGA
ATCTCATTTCTTTGGCATTGTAGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTCACTG
ACGTCGCAGTAG
Found at i:5125065 original size:97 final size:97
Alignment explanation
Indices: 5124867--5125542 Score: 584
Period size: 97 Copynumber: 7.0 Consensus size: 97
5124857 ACGTCACAGT
* * *
5124867 AGATTAAAGCTGAAGGCAGCGAATCTCATTT-TCTTGGCATTCG-AGTGGAACAGATTAAAGCTA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTC-TGGC-GTCGCAGT-----AGATTAAAGCTG
* * *
5124930 AAGGAAGCGAATCTTATTTACC-TGGCGTCGCAGT-----
59 AAGGCAGCGAATCTTATTT-CCTTGGCATTGCAGTGGAAC
* * * * * * *
5124964 AGATTAAAGTTGAAAGCGGTGAATCTTATTTCTCTGGCTTCACAGTAGATTAAAGTTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
* * * *
5125029 TGAATCTCATTTCTTTGGCATTGTAGTGGAAC
66 CGAATCTTATTTCCTTGGCATTGCAGTGGAAC
* * *
5125061 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCAT-TGACGTCGCAGTAGATTAAAGCTAAAGGAA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTC-TCTGGCGTCGCAGTAGATTAAAGCTGAAGGCA
* * **** *
5125125 ACGAATCTTATTTTCTTAATTTTGCAGTAGAAC
65 GCGAATCTTATTTCCTTGGCATTGCAGTGGAAC
* * * * * * * ** * *
5125158 AAATTAAAGTTGAAGCCAACAAATATTATTTCTCTGTCGTCTTAGTAGATTAAAACTAAAGGCAG
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
**
5125223 CGAATCACATTTCCTTGGCATTGCAGTGGAAC
66 CGAATCTTATTTCCTTGGCATTGCAGTGGAAC
* * * * *
5125255 AGATTAACA-CTGAAGGCAGCGAATCTTATTTCCCTAGCATCGCAGTAGACTAAAGCTGAAGGCG
1 AGATTAA-AGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCA
* * * *
5125319 GAGAATGTTATTTCCATGGCGTTGCAGTGGAAC
65 GCGAATCTTATTTCCTTGGCATTGCAGTGGAAC
* * ** * * * *
5125352 AGATTAAAGCTGAAGGCAGTGAATCTTATTTCCCTTACATCGTAGTAAATTAAAGTTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
* * * *
5125417 TGAATCTTACTTT-CTGGGCAATACAGTGGAAC
66 CGAATCTTA-TTTCCTTGGCATTGCAGTGGAAC
*
5125449 AGTTTAAAGCTGAAGGCAGCGAATCTTATTTC-CTTGGCGTCGCAGTAGATTAAAGCTGAAGGCA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTC-TGGCGTCGCAGTAGATTAAAGCTGAAGGCA
* *
5125513 GCAAATCTTATTTCCTTGGCGTTGCAGTGG
65 GCGAATCTTATTTCCTTGGCATTGCAGTGG
5125543 GATGGTTTGA
Statistics
Matches: 457, Mismatches: 107, Indels: 30
0.77 0.18 0.05
Matches are distributed among these distances:
91 1 0.00
92 35 0.08
96 9 0.02
97 405 0.89
98 7 0.02
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (97 bp):
AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
CGAATCTTATTTCCTTGGCATTGCAGTGGAAC
Found at i:5125207 original size:194 final size:193
Alignment explanation
Indices: 5124235--5125527 Score: 608
Period size: 194 Copynumber: 6.7 Consensus size: 193
5124225 GCAGTGGAAC
* * * * * * * *
5124235 AGATTAAAGCTGATGACAGCGAATCTCCTTTCCTTGGCGTTGTAGTGGAACAAATTAAAGCTGAA
1 AGATTAAAGTTGAAGGCAGTGAATCTCATTT-CTTGGCATTGCAGTGGAACAGATTAAAGCTGAA
* * * * * * * * * *
5124300 GGCAACAAATCTTATTTCCTTAACGTCACATTAGATTAAAGCTAAAGGTAGCAAATCTCATTTCC
65 GGCAGCGAATCTTATTTCCTTGACGTCGCAGTAGATTAAAGCTGAAGGAAACGAATCTTATTTCC
* ** * * * * * * **
5124365 TTAGTGTTGCAGTGGAACAGATTAAAG-TAGGAGGCAACAAATCTTATTTCTCTAG-CGTCGCAG
130 ATAACGTTGCAGTAGAACAAATTAAAGCT-GAAGCCAACAAATATTATTTCTCT-GTCATCATAG
5124428 T
193 T
* * * * * * *
5124429 AGATTAAAGCTAAAGGCAG-GAAATATCATTTCCCTGGCATTGCAGTGGAACAAATTAAAGTTAA
1 AGATTAAAGTTGAAGGCAGTG-AATCTCATTT-CTTGGCATTGCAGTGGAACAGATTAAAGCTGA
** * * * * * * * * *
5124493 AGGCAGTAAATTTTATTTCCCTGGCATCGCAGTAGATTAAAGCTGCACGTAGCAAATCTTATTTC
64 AGGCAGCGAATCTTATTTCCTTGACGTCGCAGTAGATTAAAGCTGAAGGAAACGAATCTTATTTC
* *** * * * * * * * * * * **
5124558 CTTGGTGTTGCAGTGGAATAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCTGGCATCGCAGT
129 CATAACGTTGCAGTAGAACAAATTAAAGCTGAAGCCAACAAATATTATTTCTCTGTCATCATAGT
* * ** * * *
5124623 AGATTAAAGCTGAAGGCAGTGAATCTTATTTCATTTCCGTTGCAGTGGAATAGATTAAAGCTAAA
1 AGATTAAAGTTGAAGGCAGTGAATCTCATTTC-TTGGCATTGCAGTGGAACAGATTAAAGCTGAA
* * * * * * *
5124688 GGCAGCGAATCTCATTTCCATTG-CATTGCAGTGGAAGAAATTAAAGCTGACGGCAGCAAATCTT
65 GGCAGCGAATCTTATTTCC-TTGACGTCGCAGT---AG--ATTAAAGCTGAAGGAAACGAATCTT
* * * * ** ** * * * * * * *
5124752 TTTTCCCTAGCGTCGCTCTAGATTAAATTTAAA---G--G-CATCGAATCTCATTTCCCTGGCGT
124 ATTTCCATAACGTTGCAGTAGAACAAA-TTAAAGCTGAAGCCAACAAATATTATTTCTCTGTC-A
**
5124811 TGCACTGGAAC
187 T-CA-T--AGT
* * * * * * * * **
5124822 ATATTAAAGCTGAAAGAAGT-AATCTTATTTTCCTGACGTCACAGT-----AGATTAAAGCTGAA
1 AGATTAAAGTTGAAGGCAGTGAATCTCA-TTTCTTGGCATTGCAGTGGAACAGATTAAAGCTGAA
* * * * * *
5124881 GGCAGCGAATCTCATTTTCTTGGCATTCG-AGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTT
65 GGCAGCGAATCTTATTTCCTTGAC-GTCGCAGT-----AGATTAAAGCTGAAGGAAACGAATCTT
** * * **** * * *
5124945 ATTTACC-TGGCGTCGCAGTAG-----ATTAAAGTTGAAAG-CGGTGAATCTTATTTCTCTGGCT
124 ATTT-CCATAACGTTGCAGTAGAACAAATTAAAGCTG-AAGCCAACAAATATTATTTCTCTGTCA
*
5125003 TCACAGT
187 TCATAGT
*
5125010 AGATTAAAGTTGAAGGCAGTGAATCTCATTTCTTTGGCATTGTAGTGGAACAGATTAAAGCTGAA
1 AGATTAAAGTTGAAGGCAGTGAATCTCATTTC-TTGGCATTGCAGTGGAACAGATTAAAGCTGAA
* * *
5125075 GGCAGCGAATCTTATTTCATTGACGTCGCAGTAGATTAAAGCTAAAGGAAACGAATCTTATTTTC
65 GGCAGCGAATCTTATTTCCTTGACGTCGCAGTAGATTAAAGCTGAAGGAAACGAATCTTATTTCC
* ** * * *
5125140 TTAATTTTGCAGTAGAACAAATTAAAGTTGAAGCCAACAAATATTATTTCTCTGTCGTCTTAGT
130 ATAACGTTGCAGTAGAACAAATTAAAGCTGAAGCCAACAAATATTATTTCTCTGTCATCATAGT
** * * *
5125204 AGATTAAAACTAAAGGCAGCGAATCACATTTCCTTGGCATTGCAGTGGAACAGATTAACA-CTGA
1 AGATTAAAGTTGAAGGCAGTGAATCTCATTT-CTTGGCATTGCAGTGGAACAGATTAA-AGCTGA
* * * ** *
5125268 AGGCAGCGAATCTTATTTCCCT-AGCATCGCAGTAGACTAAAGCTGAAGGCGGA-GAATGTTATT
64 AGGCAGCGAATCTTATTTCCTTGA-CGTCGCAGTAGATTAAAGCTGAAGG-AAACGAATCTTATT
** * * * *** * * *
5125331 TCCATGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGTGAATCTTATTTCCCT-TACATCGT
127 TCCATAACGTTGCAGTAGAACAAATTAAAGCTGAAGCCAACAAATATTATTTCTCTGT-CATCAT
5125395 AGT
191 AGT
* * * * * *
5125398 AAATTAAAGTTGAAGGCAGTGAATCTTACTTTCTGGGCAATACAGTGGAACAGTTTAAAGCTGAA
1 AGATTAAAGTTGAAGGCAGTGAATCTCA-TTTCTTGGCATTGCAGTGGAACAGATTAAAGCTGAA
* * * *
5125463 GGCAGCGAATCTTATTTCCTTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCAAATCTTATTTCC
65 GGCAGCGAATCTTATTTCCTTGACGTCGCAGTAGATTAAAGCTGAAGGAAACGAATCTTATTTCC
5125528 TTGGCGTTGC
Statistics
Matches: 865, Mismatches: 181, Indels: 106
0.75 0.16 0.09
Matches are distributed among these distances:
187 5 0.01
188 23 0.03
189 52 0.06
190 1 0.00
191 2 0.00
192 5 0.01
193 100 0.12
194 579 0.67
195 14 0.02
196 1 0.00
197 3 0.00
198 15 0.02
199 60 0.07
200 5 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (193 bp):
AGATTAAAGTTGAAGGCAGTGAATCTCATTTCTTGGCATTGCAGTGGAACAGATTAAAGCTGAAG
GCAGCGAATCTTATTTCCTTGACGTCGCAGTAGATTAAAGCTGAAGGAAACGAATCTTATTTCCA
TAACGTTGCAGTAGAACAAATTAAAGCTGAAGCCAACAAATATTATTTCTCTGTCATCATAGT
Found at i:5125632 original size:44 final size:44
Alignment explanation
Indices: 5125569--5125743 Score: 226
Period size: 44 Copynumber: 4.0 Consensus size: 44
5125559 CATGGTAGAT
* *
5125569 CTTATCTCCCTGAACTTGCAGTGGAGCAGATTAAAGCCACAAAC
1 CTTATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
* *
5125613 CTTATCCCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAACC
1 CTTATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
* * **
5125657 CTTATCCCCATGAAGTTGCAGTGGAGCAGATTGAAA-CCACCAGT
1 CTTATCCCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCCACAAAC
** * *
5125701 CTTATTTCCCTGAAGTTGCAGTGGAGCAGACTAAAACCACAAA
1 CTTATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAA
5125744 TCTCTTCCCC
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
43 3 0.03
44 108 0.95
45 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.22
Consensus pattern (44 bp):
CTTATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
Found at i:5126013 original size:17 final size:17
Alignment explanation
Indices: 5125993--5126035 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
5125983 TGGCCTGGCC
5125993 AAAATTAACCAAAT-TAA
1 AAAATTAACCAAATAT-A
**
5126010 AAAAGAAACCAAATATA
1 AAAATTAACCAAATATA
5126027 AAAATTAAC
1 AAAATTAAC
5126036 AATTGACCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
17 20 0.95
18 1 0.05
ACGTcount: A:0.67, C:0.12, G:0.02, T:0.19
Consensus pattern (17 bp):
AAAATTAACCAAATATA
Found at i:5127627 original size:97 final size:97
Alignment explanation
Indices: 5126620--5127623 Score: 1175
Period size: 97 Copynumber: 10.4 Consensus size: 97
5126610 GCGAGGGTTG
*
5126620 TAAAGCTGAAGCCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * *
5126685 TCTGATTTCCTTTGCGTTGCAGAGGAACAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * * *
5126717 TAAAGCTGAAGGCAGCAAATCCTATTTCCCTGGTGTCACAGTAGATTAAACCTGAAGGTAGCGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
*
5126782 TCAT-ATTGCCTTGGCGTTGCAGTGGAACAGAT
66 TC-TCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * *
5126814 TAAAGTTGAAGGCAGTAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGACAACGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * *
5126879 TCTCATTTCCTTGGCGTTACGGTGGAATAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * ** *
5126911 TATAGCTGAAGGTACCAAATCTTATTTCCCTGGCGTCATAGTAGATTAAAGCTAAAGGCAGCGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
*
5126976 TCTCATTTCCTTGGCGTTACAGTGGAACAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * * * *
5127008 TAAAGCTGAATGTAGTAAATCTTATTTCCTTGGCGTCGCAGTAGATTAAAGCTGAAGGTAGTGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * * *
5127073 TCTTATTTCCTTGGCGGTGTAGTGGAATAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * * * * * * *
5127105 TGAGGCTGAAGGTAACAAATCTTATTTCCTTGGCCTCGTAGTAGATTAAAGCTAAAGGTAGCGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * ** *
5127170 TCACATTTCTTTGGTATTGCAGTGGAACAGAG
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * *
5127202 TAAACCTTAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * * * *
5127267 TCTCATTTCTTTGGCATTGTAGTGGGATAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * * * * *
5127299 TAAAGTTGAAGGCAGCGAATCTTATTTCCCCGACGTCGTAGTAGATTAAAAG-TGAATGCAGCAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATT-AAAGCTGAAGGCAGCGA
* *
5127363 ATCTCATTTCATTGGCGTTGCAGTGGAACAGTT
65 ATCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * * * * *
5127396 TAAAGCTAAAGGCAGCGAATCTTATTTCCCTAGTGTCGAAATAGATTAAAGCTGAAGGCAGCAAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* *
5127461 TCTCATTTCCTTGGCGTTGCAATGAAACAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
** * * * * * * * *
5127493 TAAAATTGAAGGTAACGAATCTTATTTCCTTGGCATCACAGTAGATTAAAGCTCAAGGCAGAGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * *
5127558 TCTTATTTCCTTGGCGTTACAATGGAACAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
*
5127590 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGC
5127624 ATCATAGTGG
Statistics
Matches: 766, Mismatches: 137, Indels: 8
0.84 0.15 0.01
Matches are distributed among these distances:
96 5 0.01
97 756 0.99
98 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (97 bp):
TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
Found at i:5127723 original size:44 final size:44
Alignment explanation
Indices: 5127658--5127837 Score: 193
Period size: 44 Copynumber: 4.1 Consensus size: 44
5127648 ATCATGGTAG
5127658 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
* * * **
5127702 ACCTTATC-CCCTTGAAGTTGCAGT-GAGGCAGGTTGAAGTGACAA
1 ATCTTATCTCCC-TGAAGTTGCAGTGGA-GCAGATTAAAGCCACAA
* * * * *
5127746 ATCTTATCTTCCTGAAGTTGCAATGGAGTAGATTGAAGCCACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
* * * * *
5127790 GTCTTATTTCCCTAAAGTTGCAGTGGAGCAGACTAAAACCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
5127834 ATCT
1 ATCT
5127838 CGTCCCCTTT
Statistics
Matches: 108, Mismatches: 24, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
43 5 0.05
44 99 0.92
45 4 0.04
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
Found at i:5129513 original size:27 final size:28
Alignment explanation
Indices: 5129477--5129533 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
5129467 TTTTTTACGG
*
5129477 TTTTATTTTGTAATACATTTTTAGGTCA
1 TTTTATTTTGTAATACACTTTTAGGTCA
* **
5129505 TTTTA-TTTGTGATAGGCTTTTAGGTCA
1 TTTTATTTTGTAATACACTTTTAGGTCA
5129532 TT
1 TT
5129534 AACTTTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.21, C:0.07, G:0.16, T:0.56
Consensus pattern (28 bp):
TTTTATTTTGTAATACACTTTTAGGTCA
Found at i:5133346 original size:18 final size:17
Alignment explanation
Indices: 5133320--5133355 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
5133310 TTTGGTTATA
5133320 TTTAATTTTCGATATGTT
1 TTTAATTTT-GATATGTT
*
5133338 TTTATTTTTGATATGTT
1 TTTAATTTTGATATGTT
5133355 T
1 T
5133356 CATTTAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (17 bp):
TTTAATTTTGATATGTT
Found at i:5137837 original size:94 final size:94
Alignment explanation
Indices: 5137659--5137856 Score: 274
Period size: 94 Copynumber: 2.1 Consensus size: 94
5137649 ACTGTAACGA
* *
5137659 CAGGGAGATAAGGCTTGTCATGGTAAATTTAATCCGACCTACTTCAACTTCAGAGGTATAGGATT
1 CAGGGAGATAAGACTTGTCATGGTAAATTTAATCCAACCTACTTCAACTTCAGAGGTATAGGATT
*
5137724 AGTAGCTTCAGTATACTCTACTGCAACTT
66 AGTAGCTTCAATATACTCTACTGCAACTT
**
5137753 TTGGGAGATAAGACTTGTCATGGTAAATTTAATCCAACCTACTGT-AACTTCAGAGGTATAGGAT
1 CAGGGAGATAAGACTTGTCATGGTAAATTTAATCCAACCTACT-TCAACTTCAGAGGTATAGGA-
* * * * *
5137817 TTA-TAGTTTTAATCTGCTCTACTGTAACTT
64 TTAGTAGCTTCAATATACTCTACTGCAACTT
5137847 CAGGGAGATA
1 CAGGGAGATA
5137857 GGATTTGTAT
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
94 86 0.96
95 4 0.04
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (94 bp):
CAGGGAGATAAGACTTGTCATGGTAAATTTAATCCAACCTACTTCAACTTCAGAGGTATAGGATT
AGTAGCTTCAATATACTCTACTGCAACTT
Found at i:5138246 original size:89 final size:89
Alignment explanation
Indices: 5138073--5138840 Score: 1029
Period size: 89 Copynumber: 8.6 Consensus size: 89
5138063 CTGCAAACTA
* * *
5138073 TGGTGTCTTTGATCTGCTTCGCTGTCAGTACAAGAAGGCAAGATCTGCTATCTTCAGTCTGCTTC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* * * * *
5138138 ACT-ACA-AACCTAGGGAGGCAAGAC
66 GCTGTCAGTA-C-AGGAAGGCAAGGC
* * * * * ** *
5138162 TAGTGTCTTCGATCTTCTTCGTTGTTAGTACAGGAAGGCGAGATCTATTATCTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
**
5138227 GCTGTCAGTACAGGAAGGCAAAAC
66 GCTGTCAGTACAGGAAGGCAAGGC
* *
5138251 TGGTGTCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTACCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
5138316 GCTGTCAGTACAAGAAAGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * *
5138340 TAGTGTCTTCGATTTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCT
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
5138405 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * *
5138429 TGGTGTCTTTGATATGCTTCGCTGTCAGTACAAGAAGGTAAGATCTACTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
*
5138494 GCTATCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* *
5138518 TGGTG-CATTCGATCTGCTTCACTATCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
1 TGGTGTC-TTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
* *
5138582 CGTTGTCAGTACAGGAAGGTAAGGC
65 CGCTGTCAGTACAGGAAGGCAAGGC
* * * *
5138607 TGGTGTCTTTGATCTACTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTTTGCTCT
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
** *
5138672 GCTGTCAGTACATAAAGGCAAGGT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * *
5138696 TGGTGTCTTCGATCTACTTCACTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCAGTATGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
5138761 GCTGTCAGTACACGAAGGCAATGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* *
5138785 TAGTGTCTTCGATCTGCTTCGCTGTCAGGACAGGAAGGCAAGATCTGCTATCTTCA
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCA
5138841 TTGATCTATT
Statistics
Matches: 593, Mismatches: 82, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
88 1 0.00
89 587 0.99
90 4 0.01
91 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (89 bp):
TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
GCTGTCAGTACAGGAAGGCAAGGC
Found at i:5140104 original size:5 final size:5
Alignment explanation
Indices: 5140094--5140134 Score: 59
Period size: 5 Copynumber: 8.4 Consensus size: 5
5140084 GGCCTCTCCT
5140094 TTTTC TTTTC TTTTC TTTTC TTCTTC -TTT- TTTTC TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC TT-TTC TTTTC TTTTC TTTTC TT
5140135 GATATACTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 5 0.15
5 25 0.76
6 3 0.09
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:5140147 original size:24 final size:23
Alignment explanation
Indices: 5140092--5140147 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
5140082 TTGGCCTCTC
* * *
5140092 CTTTTTCTTTTCTTTTCTTTTCTT
1 CTTTTT-TTTTCTTTTCTTATATA
5140116 CTTCTTTTTTTCTTTTCTTGATATA
1 CTT-TTTTTTTCTTTTCTT-ATATA
5140141 CTTTTTT
1 CTTTTTT
5140148 ATTAAATCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 19 0.70
25 8 0.30
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (23 bp):
CTTTTTTTTTCTTTTCTTATATA
Found at i:5146426 original size:144 final size:144
Alignment explanation
Indices: 5146166--5146469 Score: 436
Period size: 144 Copynumber: 2.1 Consensus size: 144
5146156 TTGTGGAATT
* * * *
5146166 GTTGG-TCAAATCCCTTCTACTTTGGGTTAGTTATTAAATCCCAAATCTTTAATTCTTTAGGGCA
1 GTTGGTTC-AATCCCTTCTACTTCGAGTCAGTTATTAAATCCCAAATCTTTAATTCTTTAGGGAA
* ** *
5146230 ACAAAATTAATGGATCTATTCCATCTGGAGTTGGATTCTTATCAAACTTAACTTATTTTGATGTC
65 ACAAAATCAATGGATCTATTCCATCTAAAGTTGGATTCTTATCAAACTTAACTTATTTCGATGTC
*
5146295 TACGACAACAGACTA
130 TACGACAACAAACTA
*
5146310 GTTGGTTCAATCCCTTCTGCTTCGAGTCAGTTATTAAA-CCTCAAATAC-TTAATTCTTGT-GGG
1 GTTGGTTCAATCCCTTCTACTTCGAGTCAGTTATTAAATCC-CAAAT-CTTTAATTCTT-TAGGG
5146372 AAACAAAATCAATGGATCTATTCCATCTAAAGTTGGATTCTTATCAAACTTAACTTATTTCGATG
63 AAACAAAATCAATGGATCTATTCCATCTAAAGTTGGATTCTTATCAAACTTAACTTATTTCGATG
*
5146437 TCTACGACAACAAACTG
128 TCTACGACAACAAACTA
*
5146454 GTTGGTTCAATACCTT
1 GTTGGTTCAATCCCTT
5146470 TTTCCTTGTA
Statistics
Matches: 144, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
143 2 0.01
144 138 0.96
145 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (144 bp):
GTTGGTTCAATCCCTTCTACTTCGAGTCAGTTATTAAATCCCAAATCTTTAATTCTTTAGGGAAA
CAAAATCAATGGATCTATTCCATCTAAAGTTGGATTCTTATCAAACTTAACTTATTTCGATGTCT
ACGACAACAAACTA
Found at i:5156567 original size:13 final size:14
Alignment explanation
Indices: 5156544--5156582 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
5156534 GACAACCAAC
5156544 AGAACAACAAATAG
1 AGAACAACAAATAG
5156558 AGAA-AACAAATAG
1 AGAACAACAAATAG
* *
5156571 AAAACGACAAAT
1 AGAACAACAAAT
5156583 GAGGCAGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.67, C:0.13, G:0.13, T:0.08
Consensus pattern (14 bp):
AGAACAACAAATAG
Found at i:5157451 original size:16 final size:16
Alignment explanation
Indices: 5157432--5157464 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
5157422 TATTCTCATT
*
5157432 TTTAGTTATTTTTTTA
1 TTTACTTATTTTTTTA
5157448 TTTACTTATTTTTTTA
1 TTTACTTATTTTTTTA
5157464 T
1 T
5157465 ATTTGTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTACTTATTTTTTTA
Found at i:5158507 original size:6 final size:6
Alignment explanation
Indices: 5158476--5158506 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
5158466 TGGCAACTCC
*
5158476 CGTTTT CGTTTT CGTTTT CGTTTT CATTTT C
1 CGTTTT CGTTTT CGTTTT CGTTTT CGTTTT C
5158507 AAAATCTAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.03, C:0.19, G:0.13, T:0.65
Consensus pattern (6 bp):
CGTTTT
Found at i:5159625 original size:19 final size:19
Alignment explanation
Indices: 5159601--5159647 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
5159591 AATGTCTCTT
*
5159601 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTGCAT-CA
5159620 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
5159639 TGTGCATTA
1 TTTGCATTA
5159648 GATTTTTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:5162199 original size:6 final size:6
Alignment explanation
Indices: 5162199--5162230 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
5162189 AAAAATCAAA
5162199 AAAATC AAAATC AAAATC AAAATC AAAATC AA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AA
5162231 GAATAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.69, C:0.16, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATC
Found at i:5162206 original size:20 final size:21
Alignment explanation
Indices: 5162181--5162238 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 21
5162171 GTTCAGATTC
5162181 AATCAAAA-AAAAATCAAAAA
1 AATCAAAATAAAAATCAAAAA
*
5162201 AATCAAAATCAAAATCAAAATCAA
1 AATCAAAATAAAAATC-AAA--AA
5162225 AATCAAGAATAAAA
1 AATCAA-AATAAAA
5162239 GAAAAAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 8 0.26
21 6 0.19
22 3 0.10
24 8 0.26
25 6 0.19
ACGTcount: A:0.72, C:0.12, G:0.02, T:0.14
Consensus pattern (21 bp):
AATCAAAATAAAAATCAAAAA
Found at i:5163650 original size:87 final size:87
Alignment explanation
Indices: 5163504--5164379 Score: 1261
Period size: 87 Copynumber: 10.1 Consensus size: 87
5163494 AGATCAGTGA
* ** *
5163504 AGATCGAAAACAAAACCTTGCCTCCATTAGTTGCAGTGTAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
5163569 CTTCCTACATTAACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* *
5163591 AGATCGAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5163656 CTTCCTACGTTAACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
*
5163678 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * *
5163743 CTTCCTACGTTAACAGTGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* * *
5163765 AGATCGAAAACAAAGCCTTGCCTCCATCAG-TACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5163829 CTTCCTGCATTGACAGTGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* * *
5163851 AGATCAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
5163916 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* * * *
5163938 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGTTGGTTAAAGACAACAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
5164003 CTTCCTGCATTAACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* *
5164025 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5164090 CTTCCTGCATTAAGAGTGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* *
5164112 AGATCGAAAACAAAGTCTTGCCTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5164177 CTTCCTACGTTAACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* * *
5164199 AGATCGAAAACAAAGCCTTGCCTCCATCAG-TACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* **
5164263 CTTCCTGCATTGACAATGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* * * * * * * *
5164285 AAATCGAAAACAAAGCCTTGCCTCAATCAGTTACAATGGAGCTGGTTAAAGATAGTAGATATTCC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * ** *
5164350 CCTCCTGCGTCGACAGTGAAGC
66 CTTCCTGCATTAACAGCGAAGC
5164372 AGATCGAA
1 AGATCGAA
5164380 GATTACATGT
Statistics
Matches: 722, Mismatches: 65, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
86 153 0.21
87 569 0.79
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCATTAACAGCGAAGC
Found at i:5163700 original size:43 final size:43
Alignment explanation
Indices: 5163651--5163787 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 43
5163641 GATAGCAGAT
*
5163651 CTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
** * * * * * * *
5163694 CTTGCC-TCC-ATCGGTT-GTAGTGGAGCTGGT-TAAAGATAGCAGAT
1 CTTGCCTTCCTA-C-GTTAACAGTGAAGCAGATCGAAA-ACA-AAG-C
5163738 CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
5163781 CTTGCCT
1 CTTGCCT
5163788 CCATCAGTAC
Statistics
Matches: 66, Mismatches: 19, Indels: 18
0.64 0.18 0.17
Matches are distributed among these distances:
41 4 0.06
42 14 0.21
43 18 0.27
44 11 0.17
45 15 0.23
46 4 0.06
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (43 bp):
CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
Found at i:5163828 original size:43 final size:43
Alignment explanation
Indices: 5163781--5163917 Score: 109
Period size: 42 Copynumber: 3.2 Consensus size: 43
5163771 AAAACAAAGC
*
5163781 CTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCTGAT
1 CTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCAGAT
* * * * * * * *
5163824 CTTGCCTTCC-TGCATTGACAGTGAAGCAGATCAAAAATA-AAG-C
1 CTTGCC-TCCAT-CAGT-ACAGTGGAGCTGGTTAAAGATAGCAGAT
* **
5163867 CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGAT
1 CTTGCCTCCATCAG-TACAGTGGAGCTGGTTAAAGATAGCAGAT
5163911 CTTGCCT
1 CTTGCCT
5163918 TCCTGCGTTA
Statistics
Matches: 67, Mismatches: 20, Indels: 13
0.67 0.20 0.13
Matches are distributed among these distances:
42 19 0.28
43 17 0.25
44 14 0.21
45 17 0.25
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (43 bp):
CTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCAGAT
Found at i:5163960 original size:43 final size:43
Alignment explanation
Indices: 5163911--5164047 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 43
5163901 GATAGCAGAT
5163911 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
** * * ** * * *
5163954 CTTGCC-TCCAT-CGGTT-GTAGTGGAGTTGGT-TAAAGACAACAGAT
1 CTTGCCTTCC-TGC-GTTAACAGCGAAGCAGATCGAAA-ACAA-AG-C
*
5163998 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
5164041 CTTGCCT
1 CTTGCCT
5164048 CCATCGGTTG
Statistics
Matches: 66, Mismatches: 19, Indels: 18
0.64 0.18 0.17
Matches are distributed among these distances:
41 3 0.05
42 15 0.23
43 19 0.29
44 11 0.17
45 15 0.23
46 3 0.05
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (43 bp):
CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
Found at i:5164133 original size:43 final size:43
Alignment explanation
Indices: 5163997--5164134 Score: 106
Period size: 43 Copynumber: 3.2 Consensus size: 43
5163987 AGACAACAGA
* *
5163997 TCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAG
1 TCTTGCCTTCCTGCATTAAGAGTGAAGCAGATCGAAAACAAAG
* * * * * * *
5164040 CCTTGCC-TCCAT-CGGTT--GTAGTGGAGCTGGT-TAAAGATAACAG
1 TCTTGCCTTCC-TGC-ATTAAG-AGTGAAGCAGATCGAAA-ACAA-AG
5164083 ATCTTGCCTTCCTGCATTAAGAGTGAAGCAGATCGAAAACAAAG
1 -TCTTGCCTTCCTGCATTAAGAGTGAAGCAGATCGAAAACAAAG
5164127 TCTTGCCT
1 TCTTGCCT
5164135 CCATCGGTTG
Statistics
Matches: 68, Mismatches: 16, Indels: 22
0.64 0.15 0.21
Matches are distributed among these distances:
41 3 0.04
42 15 0.22
43 19 0.28
44 11 0.16
45 16 0.24
46 4 0.06
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (43 bp):
TCTTGCCTTCCTGCATTAAGAGTGAAGCAGATCGAAAACAAAG
Found at i:5164327 original size:434 final size:434
Alignment explanation
Indices: 5163504--5164379 Score: 1437
Period size: 434 Copynumber: 2.0 Consensus size: 434
5163494 AGATCAGTGA
* * * *
5163504 AGATCGAAAACAAAACCTTGCCTCCATTAGTTGCAGTGTAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAACCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGACAACAGATCTTGC
*
5163569 CTTCCTACATTAACAGCGAAGCAGATCGAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
66 CTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
* *
5163634 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
131 GGTTAAAGATAACAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
* * *
5163699 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGTGAAG
196 CTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAG
5163764 CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
261 CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
* * * * * ** *
5163829 CTTCCTGCATTGACAGTGAAGCAGATCAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
326 CTTCCTGCATTGACAATGAAGCAAATCAAAAACAAAGCCTTGCCTCAATCAGTTACAATGGAGCT
* * * *
5163894 GGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGC
391 GGTTAAAGATAGCAGATATTCCCCTCCTGCGTCAACAGCGAAGC
* * * *
5163938 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGTTGGTTAAAGACAACAGATCTTGC
1 AGATCGAAAACAAAACCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGACAACAGATCTTGC
*
5164003 CTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
66 CTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
* * * *
5164068 GGTTAAAGATAACAGATCTTGCCTTCCTGCATTAAGAGTGAAGCAGATCGAAAACAAAGTCTTGC
131 GGTTAAAGATAACAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
5164133 CTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAG
196 CTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAG
5164198 CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
261 CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
*
5164263 CTTCCTGCATTGACAATGAAGCAAATCGAAAACAAAGCCTTGCCTCAATCAGTTACAATGGAGCT
326 CTTCCTGCATTGACAATGAAGCAAATCAAAAACAAAGCCTTGCCTCAATCAGTTACAATGGAGCT
* * *
5164328 GGTTAAAGATAGTAGATATTCCCCTCCTGCGTCGACAGTGAAGC
391 GGTTAAAGATAGCAGATATTCCCCTCCTGCGTCAACAGCGAAGC
5164372 AGATCGAA
1 AGATCGAA
5164380 GATTACATGT
Statistics
Matches: 407, Mismatches: 35, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
434 407 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (434 bp):
AGATCGAAAACAAAACCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGACAACAGATCTTGC
CTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
GGTTAAAGATAACAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
CTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAG
CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
CTTCCTGCATTGACAATGAAGCAAATCAAAAACAAAGCCTTGCCTCAATCAGTTACAATGGAGCT
GGTTAAAGATAGCAGATATTCCCCTCCTGCGTCAACAGCGAAGC
Found at i:5164373 original size:347 final size:347
Alignment explanation
Indices: 5163504--5164379 Score: 1322
Period size: 347 Copynumber: 2.5 Consensus size: 347
5163494 AGATCAGTGA
* * *
5163504 AGATCGAAAACAAAACCTTGCCTCCATTAGTTGCAGTGTAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5163569 CTTCCTACATTAACAGCGAAGCAGATCGAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
66 CTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
*
5163634 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
131 GGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
* *
5163699 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGTGAAG
196 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCTACATTAACAGTGAAG
* *
5163764 CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
261 CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGGAGCTAGTTAAAGATAGCAGATCTTGC
* * *
5163829 CTTCCTGCATTGACAGTGAAGC
326 CTTCCTACATTAACAGCGAAGC
* * * *
5163851 AGATCAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5163916 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGTT
66 CTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
* * *
5163981 GGTTAAAGACAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
131 GGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
* *
5164046 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCTGCATTAAGAGTGAAG
196 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCTACATTAACAGTGAAG
* * *
5164111 CAGATCGAAAACAAAGTCTTGCCTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTG
261 CAGATCGAAAACAAAGCCTTGCCTCCATCAG-TACAGTGGAGCTAGTTAAAGATAGCAGATCTTG
*
5164176 CCTTCCTACGTTAACAGCGAAGC
325 CCTTCCTACATTAACAGCGAAGC
* *
5164199 AGATCGAAAACAAAGCCTTGCCTCCATCAG-TACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* ** * * * ** *
5164263 CTTCCTGCATTGACAATGAAGCAAATCGAAAACAAAGCCTTGCCTCAATCAGTTACAATGGAGCT
66 CTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
* * * * ** *
5164328 GGTTAAAGATAGTAGATATTCCCCTCCTGCGTCGACAGTGAAGCAGATCGAA
131 GGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAA
5164380 GATTACATGT
Statistics
Matches: 473, Mismatches: 55, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
347 397 0.84
348 76 0.16
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (347 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
GGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCTACATTAACAGTGAAG
CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGGAGCTAGTTAAAGATAGCAGATCTTGC
CTTCCTACATTAACAGCGAAGC
Found at i:5165553 original size:50 final size:50
Alignment explanation
Indices: 5165494--5165772 Score: 240
Period size: 51 Copynumber: 5.5 Consensus size: 50
5165484 GATGGTCACG
* *
5165494 TGTGTAGTACTATGTATAGGCTACTACGTGTATCAGAATGATAGGTCGCA
1 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCA
* * * * * * * *
5165544 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAG-ATAGCTTCGATCACG
1 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAAT-G-ATAGGTCGCA
5165595 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCA
1 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCA
**** * * * * * *
5165645 TGTGTAGTACTATGTGTAGGCTACTATACATACC-GGATAGCTTCGATCACG
1 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAAT-G-ATAGGTCGCA
* * * * *
5165696 TGTGTAGTATTATGTGCAGGCTACTACGTGTATCGGATAGTGAT-GGTCACA
1 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCA
* *
5165747 TGTGTAGTACTATGTGCATGCTACTA
1 TGTGTAGTACTATGTGTAGGCTACTA
5165773 TGTGAATCTG
Statistics
Matches: 180, Mismatches: 41, Indels: 15
0.76 0.17 0.06
Matches are distributed among these distances:
49 5 0.03
50 68 0.38
51 100 0.56
52 4 0.02
53 2 0.01
54 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCA
Found at i:5165606 original size:101 final size:101
Alignment explanation
Indices: 5165489--5165774 Score: 448
Period size: 101 Copynumber: 2.8 Consensus size: 101
5165479 AAAGTGATGG
*
5165489 TCACGTGTGTAGTACTATGTATAGGCTACTACGTGTATCAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAGAATGATAGGTCGCATGTGTAGTAC
*
5165554 TATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
66 TATGTGCAGGCTACTATGCATACCAGATAGCTTCGA
*
5165590 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAGAATGATAGGTCGCATGTGTAGTAC
* * *
5165655 TATGTGTAGGCTACTATACATACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCATACCAGATAGCTTCGA
* * * *
5165691 TCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTATCGGATAGTGAT-GGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAGA-A-TGATAGGTCGCATGTGTAGT
*
5165755 ACTATGTGCATGCTACTATG
64 ACTATGTGCAGGCTACTATG
5165775 TGAATCTGCA
Statistics
Matches: 169, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
101 133 0.79
102 32 0.19
103 4 0.02
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAGAATGATAGGTCGCATGTGTAGTAC
TATGTGCAGGCTACTATGCATACCAGATAGCTTCGA
Found at i:5165776 original size:26 final size:26
Alignment explanation
Indices: 5165696--5165776 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
5165686 TTCGATCACG
* *
5165696 TGTGTAGTATTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
* * *
5165722 CGTGTA-T-CGGATAGTG-ATGGTCAC-A
1 TGTGTAGTAC-TAT-GTGCATGCT-ACTA
5165747 TGTGTAGTACTATGTGCATGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
5165773 TGTG
1 TGTG
5165777 AATCTGCATC
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
25 17 0.43
26 22 0.55
27 1 0.03
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.36
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCATGCTACTA
Found at i:5165891 original size:42 final size:43
Alignment explanation
Indices: 5165784--5165995 Score: 265
Period size: 43 Copynumber: 5.0 Consensus size: 43
5165774 GTGAATCTGC
5165784 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
* * *
5165827 ATCCTT-AACTGTGAAAGG-GGTTGCTATGTGCTGATTCC-CCGT
1 ATCATTGAA-TAT-AAAGGTGGTTGCTAAGTGCTGATTCCACCGT
5165869 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
* * * * * *
5165912 ATCCTTGACTGTGAAACG-AGTTGCTATGTGCTGATTCC-CCGT
1 ATCATTGAATAT-AAAGGTGGTTGCTAAGTGCTGATTCCACCGT
*
5165954 ATCATTGATTAT-AAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
5165996 GTAACGGTTA
Statistics
Matches: 143, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
40 3 0.02
41 23 0.16
42 49 0.34
43 59 0.41
44 9 0.06
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (43 bp):
ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
Found at i:5165927 original size:85 final size:85
Alignment explanation
Indices: 5165784--5165995 Score: 381
Period size: 85 Copynumber: 2.5 Consensus size: 85
5165774 GTGAATCTGC
* *
5165784 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTAACTGTGAAAGGGGTT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTAACTGTGAAACGAGTT
5165849 GCTATGTGCTGATTCCCCGT
66 GCTATGTGCTGATTCCCCGT
*
5165869 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGACTGTGAAACGAGTT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTAACTGTGAAACGAGTT
5165934 GCTATGTGCTGATTCCCCGT
66 GCTATGTGCTGATTCCCCGT
*
5165954 ATCATTGATTAT-AAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
5165996 GTAACGGTTA
Statistics
Matches: 123, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
84 30 0.24
85 93 0.76
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (85 bp):
ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTAACTGTGAAACGAGTT
GCTATGTGCTGATTCCCCGT
Found at i:5168559 original size:13 final size:14
Alignment explanation
Indices: 5168536--5168574 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
5168526 GACAACCAAC
5168536 AGAACAACAAATAG
1 AGAACAACAAATAG
5168550 AGAA-AACAAATAG
1 AGAACAACAAATAG
* *
5168563 AAAACGACAAAT
1 AGAACAACAAAT
5168575 GAGGCAGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.67, C:0.13, G:0.13, T:0.08
Consensus pattern (14 bp):
AGAACAACAAATAG
Found at i:5170498 original size:6 final size:6
Alignment explanation
Indices: 5170467--5170497 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
5170457 TGGCGACTCC
*
5170467 CGTTTT CGTTTT CGTTTT CGTTTT CATTTT C
1 CGTTTT CGTTTT CGTTTT CGTTTT CGTTTT C
5170498 AAAATCTAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.03, C:0.19, G:0.13, T:0.65
Consensus pattern (6 bp):
CGTTTT
Found at i:5171900 original size:106 final size:108
Alignment explanation
Indices: 5171758--5171954 Score: 319
Period size: 107 Copynumber: 1.8 Consensus size: 108
5171748 TGGATTAAGA
* *
5171758 TTTAAGAGAATATTTGGCTATTTGGTCAAAC-GAAAAAATCGAAACCCAGCACATTAGGGCACG-
1 TTTAAGAGAATATTTGGCTATTTGGTCAAACAAAAAAAATCGAAACCCAACACATTAGGGCACGC
5171821 TTTCCTCAAATTTCCAAACGCAAAATAATGCATTTCTCTGAAAT
66 TTT-CTCAAATTTCCAAACGCAAAATAATGCATTTCTCTGAAAT
* *
5171865 TTTAA-AGGATATTTGGCTATTTGGTCGAACAAAAAAAATCGAAACCCAACACATTAGGGCACGC
1 TTTAAGAGAATATTTGGCTATTTGGTCAAACAAAAAAAATCGAAACCCAACACATTAGGGCACGC
*
5171929 TTTCTCAAATTTCCAAATGCAAAATA
66 TTTCTCAAATTTCCAAACGCAAAATA
5171955 TTGCCTTTAT
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
106 23 0.28
107 57 0.69
108 3 0.04
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (108 bp):
TTTAAGAGAATATTTGGCTATTTGGTCAAACAAAAAAAATCGAAACCCAACACATTAGGGCACGC
TTTCTCAAATTTCCAAACGCAAAATAATGCATTTCTCTGAAAT
Found at i:5172983 original size:15 final size:15
Alignment explanation
Indices: 5172963--5173009 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
5172953 ATAAATATAT
* *
5172963 ATAAAAATTATGAAA
1 ATAAAAATAATAAAA
5172978 ATAAAAATAATAAAA
1 ATAAAAATAATAAAA
* *
5172993 ATATATAT-ATAAAA
1 ATAAAAATAATAAAA
5173007 ATA
1 ATA
5173010 TGTGTTTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 9 0.32
15 19 0.68
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (15 bp):
ATAAAAATAATAAAA
Found at i:5175423 original size:20 final size:21
Alignment explanation
Indices: 5175400--5175465 Score: 84
Period size: 20 Copynumber: 3.2 Consensus size: 21
5175390 ATTTTTATCA
5175400 ATTTTAA-ATTTTTTAAATTT
1 ATTTTAATATTTTTTAAATTT
5175420 A-TTTAATATTTTTTAAATTT
1 ATTTTAATATTTTTTAAATTT
**
5175440 -TAATAATATTTTTTAAATATT
1 ATTTTAATATTTTTTAAAT-TT
5175461 ATTTT
1 ATTTT
5175466 TAATTTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
19 5 0.13
20 29 0.76
21 2 0.05
22 2 0.05
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTTAATATTTTTTAAATTT
Found at i:5175434 original size:10 final size:9
Alignment explanation
Indices: 5175401--5175457 Score: 69
Period size: 9 Copynumber: 5.9 Consensus size: 9
5175391 TTTTTATCAA
5175401 TTTTAAATT
1 TTTTAAATT
5175410 TTTTAAATT
1 TTTTAAATT
5175419 TATTTAATATT
1 T-TTTAA-ATT
5175430 TTTTAAATT
1 TTTTAAATT
*
5175439 TTAATAATATT
1 TT-TTAA-ATT
5175450 TTTTAAAT
1 TTTTAAAT
5175458 ATTATTTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 17 0.40
10 16 0.38
11 9 0.21
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
TTTTAAATT
Found at i:5175458 original size:11 final size:11
Alignment explanation
Indices: 5175407--5175465 Score: 54
Period size: 10 Copynumber: 5.6 Consensus size: 11
5175397 TCAATTTTAA
5175407 ATTTTTTAAAT
1 ATTTTTTAAAT
*
5175418 -TTATTT-AAT
1 ATTTTTTAAAT
5175427 ATTTTTTAAAT
1 ATTTTTTAAAT
**
5175438 -TTTAAT-AAT
1 ATTTTTTAAAT
5175447 ATTTTTTAAAT
1 ATTTTTTAAAT
5175458 ATTATTTT
1 ATT-TTTT
5175466 TAATTTAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
9 6 0.16
10 18 0.49
11 9 0.24
12 4 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTTTTTAAAT
Found at i:5175473 original size:31 final size:29
Alignment explanation
Indices: 5175401--5175482 Score: 76
Period size: 30 Copynumber: 2.8 Consensus size: 29
5175391 TTTTTATCAA
** * *
5175401 TTTTAAATTTTTTAAATTTATTTAATATT
1 TTTTAAATTTTAAAAAATTTTTTAATATT
*
5175430 TTTTAAATTTTAATAATATTTTTTAAATATT
1 TTTTAAATTTTAA-AAAATTTTTT-AATATT
*
5175461 ATTTTTAA-TTTAAAAAATTTTT
1 -TTTTAAATTTTAAAAAATTTTT
5175483 AAGCTTCGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
29 11 0.26
30 15 0.35
31 11 0.26
32 6 0.14
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (29 bp):
TTTTAAATTTTAAAAAATTTTTTAATATT
Found at i:5183644 original size:15 final size:15
Alignment explanation
Indices: 5183624--5183653 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
5183614 GACTTCAATA
5183624 ATGCTTAGGGGTAAG
1 ATGCTTAGGGGTAAG
5183639 ATGCTTAGGGGTAAG
1 ATGCTTAGGGGTAAG
5183654 GTCTTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.40, T:0.27
Consensus pattern (15 bp):
ATGCTTAGGGGTAAG
Found at i:5185617 original size:11 final size:11
Alignment explanation
Indices: 5185603--5185632 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
5185593 TGTTTTTCTC
5185603 TTTTTTTATTT
1 TTTTTTTATTT
5185614 TTTTTTTATTT
1 TTTTTTTATTT
5185625 TTTATTTT
1 TTT-TTTT
5185633 TACAAATCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTATTT
Found at i:5187622 original size:144 final size:144
Alignment explanation
Indices: 5187081--5187587 Score: 915
Period size: 144 Copynumber: 3.5 Consensus size: 144
5187071 GTAATTTATG
5187081 CAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAGTCTCTCCAACA
1 CAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAGTCTCTCCAACA
5187146 ATAGAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTT
66 ATAGAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTT
*
5187211 TGGGGGAACCAAAT
131 TCGGGGAACCAAAT
* *
5187225 CAATGGATCTATCCCATTCGAAATTGGATATTTGAGAAATTTGACTTATTTGAGTCTCTCCAAGA
1 CAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAGTCTCTCCAACA
*
5187290 ATAGAATTGTTGGTCGAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTT
66 ATAGAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTT
5187355 TCGGGGAACCAAAT
131 TCGGGGAACCAAAT
* *
5187369 CAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTGATTTGAGTCTCTCCAGCA
1 CAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAGTCTCTCCAACA
* * *
5187434 ATGGAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATATCTGCTCCTT
66 ATAGAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTT
5187499 TCGGGGAACCAAAT
131 TCGGGGAACCAAAT
*
5187513 CAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAGTCTCTACAACA
1 CAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAGTCTCTCCAACA
*
5187578 ATAGACTTGT
66 ATAGAATTGT
5187588 CGATTCAATA
Statistics
Matches: 346, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 346 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (144 bp):
CAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAGTCTCTCCAACA
ATAGAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTT
TCGGGGAACCAAAT
Found at i:5187854 original size:144 final size:144
Alignment explanation
Indices: 5187659--5187969 Score: 561
Period size: 144 Copynumber: 2.2 Consensus size: 144
5187649 AACCAACTTC
5187659 AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
1 AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
* *
5187724 AAATTGACTGGTTCAATCCCTTCTTGTGTTGGTAGTTTATCAAAGATGCTGTACTTAAGCCTTGG
66 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
5187789 TTCTAATCTATTAA
131 TTCTAATCTATTAA
* *
5187803 AAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTGACTTCATTGTACCTCTCCCAAAAC
1 AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
5187868 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
66 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
5187933 TTCTAATCTATTAA
131 TTCTAATCTATTAA
*
5187947 AAGGTTCTA-TCCCAAAAGAAATT
1 AAGGTTCTATTCCC-CAAGAAATT
5187970 GGCAAGCTTT
Statistics
Matches: 160, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
143 4 0.03
144 156 0.98
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.35
Consensus pattern (144 bp):
AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
TTCTAATCTATTAA
Found at i:5195471 original size:26 final size:27
Alignment explanation
Indices: 5195440--5195540 Score: 82
Period size: 27 Copynumber: 3.7 Consensus size: 27
5195430 TATTAAAAAC
5195440 ATATAAGAAATTTGA-TAAAATTTTA-AA
1 ATATAA-AAATTT-ATTAAAATTTTAGAA
*
5195467 A-ATAAAAAATTATTAAAATTTTAGAA
1 ATATAAAAATTTATTAAAATTTTAGAA
* * * * *
5195493 ATATAAAAAATTATTTAAACTATAAAA
1 ATATAAAAATTTATTAAAATTTTAGAA
*
5195520 AGCTATAGAAATTTATTAAAA
1 A--TATAAAAATTTATTAAAA
5195541 ACACCGAAAG
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
24 1 0.02
25 15 0.25
26 7 0.11
27 23 0.38
29 15 0.25
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (27 bp):
ATATAAAAATTTATTAAAATTTTAGAA
Found at i:5195488 original size:25 final size:27
Alignment explanation
Indices: 5195406--5195507 Score: 93
Period size: 27 Copynumber: 3.6 Consensus size: 27
5195396 ACTTATAAAT
* *
5195406 AAATATAGAAAAATATATTGAAATTATTAAA
1 AAATATA-AAAAAT-TATTAAAATT-TT-AG
*
5195437 AACATATAAGAAATT-TGATAAAATTTTA-
1 AA-ATATAAAAAATTAT--TAAAATTTTAG
5195465 AAA-ATAAAAAATTATTAAAATTTTAG
1 AAATATAAAAAATTATTAAAATTTTAG
5195491 AAATATAAAAAATTATT
1 AAATATAAAAAATTATT
5195508 TAAACTATAA
Statistics
Matches: 62, Mismatches: 3, Indels: 16
0.77 0.04 0.20
Matches are distributed among these distances:
25 10 0.16
26 12 0.19
27 15 0.24
28 2 0.03
29 2 0.03
30 3 0.05
31 13 0.21
32 5 0.08
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (27 bp):
AAATATAAAAAATTATTAAAATTTTAG
Found at i:5205406 original size:17 final size:18
Alignment explanation
Indices: 5205378--5205414 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
5205368 AAAATATTAT
5205378 AATTTGTTTTTATTTACC
1 AATTTGTTTTTATTTACC
5205396 AATTT-TTTTTATTTACC
1 AATTTGTTTTTATTTACC
5205413 AA
1 AA
5205415 AATATATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.27, C:0.11, G:0.03, T:0.59
Consensus pattern (18 bp):
AATTTGTTTTTATTTACC
Found at i:5205555 original size:27 final size:27
Alignment explanation
Indices: 5205513--5205590 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
5205503 CACCCTGACC
*
5205513 AAGGTGCCAAAACCATTGGCGGCACCA
1 AAGGTGCCAAAGCCATTGGCGGCACCA
* *
5205540 AAGGTGCTAATGCCATTGGCGGCACCA
1 AAGGTGCCAAAGCCATTGGCGGCACCA
* *
5205567 ATGGTGCCAAAGGCATTGGCGGCA
1 AAGGTGCCAAAGCCATTGGCGGCA
5205591 TTACTCGTGT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.28, C:0.26, G:0.31, T:0.15
Consensus pattern (27 bp):
AAGGTGCCAAAGCCATTGGCGGCACCA
Found at i:5205691 original size:11 final size:11
Alignment explanation
Indices: 5205675--5205714 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
5205665 GGTGCTGCGG
5205675 AAAAGAAGAGA
1 AAAAGAAGAGA
5205686 AAAAG-AGAGA
1 AAAAGAAGAGA
*
5205696 AAGAGAAGAGA
1 AAAAGAAGAGA
5205707 AAAAGAAG
1 AAAAGAAG
5205715 GTATTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAGA
Found at i:5205704 original size:21 final size:20
Alignment explanation
Indices: 5205674--5205712 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
5205664 AGGTGCTGCG
5205674 GAAAAGAAGAGAAAAAGAGA
1 GAAAAGAAGAGAAAAAGAGA
5205694 GAAAGAGAAGAGAAAAAGA
1 GAAA-AGAAGAGAAAAAGA
5205713 AGGTATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (20 bp):
GAAAAGAAGAGAAAAAGAGA
Found at i:5205850 original size:15 final size:15
Alignment explanation
Indices: 5205827--5205859 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
5205817 GATAGTTTTA
5205827 GTTAGTATTATTATT
1 GTTAGTATTATTATT
*
5205842 GTTATTATTATTATT
1 GTTAGTATTATTATT
5205857 GTT
1 GTT
5205860 GTTGTTGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (15 bp):
GTTAGTATTATTATT
Found at i:5206752 original size:18 final size:18
Alignment explanation
Indices: 5206729--5206766 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
5206719 GGTTGGTGGT
5206729 GAAGAAGAAGGTGCTGGC
1 GAAGAAGAAGGTGCTGGC
*
5206747 GAAGAAGAAGGTGGTGGC
1 GAAGAAGAAGGTGCTGGC
5206765 GA
1 GA
5206767 TCATTGGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.08, G:0.47, T:0.11
Consensus pattern (18 bp):
GAAGAAGAAGGTGCTGGC
Found at i:5213324 original size:22 final size:22
Alignment explanation
Indices: 5213299--5213406 Score: 68
Period size: 22 Copynumber: 5.0 Consensus size: 22
5213289 CCTTCCTTCC
*
5213299 CTCTTCTTCTTCTTTTTTTTTT
1 CTCTTCTTCTTCTTTTTTCTTT
* *
5213321 CTCTTCTCCTT-TCCTTTTCTTT
1 CTCTTCTTCTTCT-TTTTTCTTT
5213343 C-CTTCTTTCTTTCTTTTTTC-TT
1 CTCTTC-TTC-TTCTTTTTTCTTT
* *
5213365 CTCCTTTCCTCTTC-TTCTTCTTT
1 CT-C-TTCTTCTTCTTTTTTCTTT
5213388 CT-TTCTT-TT-TTTTTCTCTT
1 CTCTTCTTCTTCTTTTT-TCTT
5213407 CTCCTTTCCT
Statistics
Matches: 67, Mismatches: 9, Indels: 22
0.68 0.09 0.22
Matches are distributed among these distances:
19 5 0.07
20 8 0.12
21 5 0.07
22 28 0.42
23 14 0.21
24 4 0.06
25 3 0.04
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (22 bp):
CTCTTCTTCTTCTTTTTTCTTT
Found at i:5213326 original size:29 final size:29
Alignment explanation
Indices: 5213280--5213423 Score: 74
Period size: 29 Copynumber: 5.2 Consensus size: 29
5213270 CCTTTTTTAA
5213280 TCTTTTTTTCCTTCCTTC-CCTCTT-CTTCT
1 TCTTTTTTTCCTTCCTTCTCCT-TTCCTT-T
*
5213309 TCTTTTTTT-TTTCTCTTCTCCTTTCCTTT
1 TCTTTTTTTCCTTC-CTTCTCCTTTCCTTT
** * * * * *
5213338 TCTTTCCTTCTTTCTTTCT-TTTTTCTTC
1 TCTTTTTTTCCTTCCTTCTCCTTTCCTTT
* ** *
5213366 TCCTTTCCT-CTT-CTTCTTCTTT-C-TT
1 TCTTTTTTTCCTTCCTTCTCCTTTCCTTT
5213391 TCTTTTTTT--TTCTCTTCTCCTTTCCTTT
1 TCTTTTTTTCCTTC-CTTCTCCTTTCCTTT
5213419 TCTTT
1 TCTTT
5213424 CCTTATTTTT
Statistics
Matches: 88, Mismatches: 18, Indels: 19
0.70 0.14 0.15
Matches are distributed among these distances:
24 2 0.02
25 7 0.08
26 14 0.16
27 6 0.07
28 22 0.25
29 27 0.31
30 10 0.11
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (29 bp):
TCTTTTTTTCCTTCCTTCTCCTTTCCTTT
Found at i:5213360 original size:42 final size:42
Alignment explanation
Indices: 5213304--5213489 Score: 202
Period size: 39 Copynumber: 4.7 Consensus size: 42
5213294 CTTCCCTCTT
5213304 CTTC-TTCTTT-TTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
1 CTTCTTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
*
5213344 CTTCTTTCTTTC--TTTTT-TCTTCTCCTTTCCTCTTC-TT-
1 CTTCTTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
5213381 CTTCTTTCTTTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
1 CTTCTTTCTTTC--TTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
* *
5213425 CTT-ATT-TTTCTTTCTTTC-C-TCTCC-TTCC-TTTCTTTC
1 CTTCTTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
* * *
5213461 TTTCTTTCTTTCTTTCTTTC-CCTCTCCTT
1 CTTCTTTCTTTCTTTTTTTCTCTTCTCCTT
5213490 CTGCCCCCCA
Statistics
Matches: 127, Mismatches: 6, Indels: 26
0.80 0.04 0.16
Matches are distributed among these distances:
36 10 0.08
37 18 0.14
38 20 0.16
39 23 0.18
40 17 0.13
41 11 0.09
42 21 0.17
43 4 0.03
44 3 0.02
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.68
Consensus pattern (42 bp):
CTTCTTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
Found at i:5213409 original size:81 final size:79
Alignment explanation
Indices: 5213300--5213475 Score: 252
Period size: 81 Copynumber: 2.2 Consensus size: 79
5213290 CTTCCTTCCC
*
5213300 TCTTC-TTC-TTCTTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTCTTTCTTT-TTT
1 TCTTCTTTCTTTC-TTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTT-ATT-TTTCTTTCTTT
*
5213362 CTTCTCCTTTCCTCTTC-T
63 CCTCTCC-TTCCT-TTCTT
5213380 TCTTCTTTCTTTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCT
1 TCTTCTTTCTTTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCT
5213445 CTCCTTCCTTTCTT
66 CTCCTTCCTTTCTT
5213459 TCTTTCTTTCTTTCTTT
1 TC-TTCTTTCTTTCTTT
5213476 CTTTCCCTCT
Statistics
Matches: 89, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
78 3 0.03
79 15 0.17
80 30 0.34
81 38 0.43
82 3 0.03
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (79 bp):
TCTTCTTTCTTTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCT
CTCCTTCCTTTCTT
Found at i:5213416 original size:5 final size:4
Alignment explanation
Indices: 5213336--5213480 Score: 104
Period size: 4 Copynumber: 35.0 Consensus size: 4
5213326 CTCCTTTCCT
*
5213336 TTTC TTTC CTTC TTTC TTTC TTT- TTTC TTCTCC TTTCC TCTTC -TTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-T-C TTT-C T-TTC TTTC
*
5213382 -TTC TTTC TTTC TTT- TTT- TTTC TCTTC -TCC TTTCC TTTTC TTTCC
1 TTTC TTTC TTTC TTTC TTTC TTTC T-TTC TTTC TTT-C -TTTC TTT-C
* * *
5213426 TTATT TTTC TTTC TTTCC TCTCC TTCC TTTC TTTC TTTC TTTC TTTC TTTC
1 TT-TC TTTC TTTC TTT-C T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
5213477 TTTC
1 TTTC
5213481 CCTCTCCTTC
Statistics
Matches: 119, Mismatches: 8, Indels: 28
0.77 0.05 0.18
Matches are distributed among these distances:
3 17 0.14
4 72 0.61
5 20 0.17
6 10 0.08
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (4 bp):
TTTC
Found at i:5213660 original size:24 final size:25
Alignment explanation
Indices: 5213618--5213681 Score: 94
Period size: 24 Copynumber: 2.5 Consensus size: 25
5213608 TTTTTTTTGG
5213618 ATATATTTTGGGTAAATAAAAAAA-T
1 ATATATTTT-GGTAAATAAAAAAAGT
5213643 ATATATTTTGGTAAATAAAAAAAGTT
1 ATATATTTTGGTAAATAAAAAAAG-T
5213669 ATAATATTTTGGT
1 AT-ATATTTTGGT
5213682 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
24 14 0.39
25 9 0.25
26 3 0.08
27 10 0.28
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (25 bp):
ATATATTTTGGTAAATAAAAAAAGT
Found at i:5220197 original size:144 final size:144
Alignment explanation
Indices: 5219038--5220188 Score: 1779
Period size: 144 Copynumber: 8.0 Consensus size: 144
5219028 ACCTGAAAGC
* * * ** * * * *
5219038 CTATTGAAGGATAGATCCAATGCCACCAAATTCAGTAGACTCCCAATTCCTGGTGGAATGGATCC
1 CTATTGGAGGATAGATCCAATGCAACTAAATTCCTTAGTCTCCCAATTTCTTGAGGAATGGATCC
* * *
5219103 ATTAAGTTGGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGCAT-CTGACAGAAAATGGG
66 ATTAAGTTTGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAG-TTGCTGACAGAAGATGGG
*
5219167 ATTGGACCAACAAGT
130 ATTGGACCAACAAGA
* *
5219182 CTATTGGAGGATAGATCCAATGCAAATAAATTCGTTAGTCTCCCAATTTCTTGAGGAATGGATCC
1 CTATTGGAGGATAGATCCAATGCAACTAAATTCCTTAGTCTCCCAATTTCTTGAGGAATGGATCC
* *
5219247 ATTAAGTTTGTTGCTTTGAAGGAACAACGAGGCAAGACTGGTTAAGCTGCTGACAGAAGATGGGA
66 ATTAAGTTTGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGA
5219312 TTGGACCAACAAGA
131 TTGGACCAACAAGA
* *
5219326 CTATTGGAGGATAGATCCAATGCAGA-TAAATTCGTTAGTCTCCCTATTTCTTGAGGAATGGATC
1 CTATTGGAGGATAGATCCAATGCA-ACTAAATTCCTTAGTCTCCCAATTTCTTGAGGAATGGATC
* *
5219390 CATTAAGTTTGTTGCTTTGAAGGAACAACGAGTCAAGACTGGTTAAGTTGCTGACAGAAGATGGG
65 CATTAAGTTTGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGG
5219455 ATTGGACCAACAAGA
130 ATTGGACCAACAAGA
* *
5219470 CTATTGGAGGATAGATCCAATGCAAATAAATTCGTTAGTCTCCCAATTTCTTGAGGAATGGATCC
1 CTATTGGAGGATAGATCCAATGCAACTAAATTCCTTAGTCTCCCAATTTCTTGAGGAATGGATCC
* *
5219535 ATTAAGTTTGTTGCTTTGAAGGAACAATGAGGCAAGACTGGTTAAGTTGCTGACAGAAGATGGGA
66 ATTAAGTTTGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGA
5219600 TTGGACCAACAAGA
131 TTGGACCAACAAGA
* * *
5219614 CTATTGGAGGATAGATCGAATTCAGAC-AAATTCCTTAGTCTCCCAATTTCTTGTGGAATGGATC
1 CTATTGGAGGATAGATCCAATGCA-ACTAAATTCCTTAGTCTCCCAATTTCTTGAGGAATGGATC
* *
5219678 CATTAAGTTTGTTGCTTTGAAGGAACAACGAGGAAAGATTGGTTAAGTCGCTGACAGAAGATGGG
65 CATTAAGTTTGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGG
5219743 ATTGGACCAACAAGA
130 ATTGGACCAACAAGA
* * *
5219758 CTATTGGAGGATAGATCGAATTCAGAC-AAATTCCTTAGTCTCCCAATTTCTTGTGGAATGGATC
1 CTATTGGAGGATAGATCCAATGCA-ACTAAATTCCTTAGTCTCCCAATTTCTTGAGGAATGGATC
* *
5219822 CATTAAGTTTGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGCTGCTGATAGAAGATGGG
65 CATTAAGTTTGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGG
*
5219887 ATTGGACCAACAAGC
130 ATTGGACCAACAAGA
* * * *
5219902 CTATTGTAGGATAGATCCAATGCAACCAAATTCCCTAGTCTCCCAATTTCTTGCGGAATGGATCC
1 CTATTGGAGGATAGATCCAATGCAACTAAATTCCTTAGTCTCCCAATTTCTTGAGGAATGGATCC
* * *
5219967 ATTAAGTTTGTTGCTTTCAAGGAACAACGAGACAAGATTGGTTAAGTTGCTGATAGAAGATGGGA
66 ATTAAGTTTGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGA
*
5220032 TTGGACCAACAAGC
131 TTGGACCAACAAGA
** * *
5220046 CTATTGTTGGATAGATCCAATGCAACTAAATTCCTTAGTCTCCCAATTTCTTGCGGAATGAATCC
1 CTATTGGAGGATAGATCCAATGCAACTAAATTCCTTAGTCTCCCAATTTCTTGAGGAATGGATCC
* * *
5220111 ATTAATTTTGTTGCTTTCAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGATAGAAGATGGGA
66 ATTAAGTTTGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGA
5220176 TTGGACCAACAAG
131 TTGGACCAACAAG
5220189 CCCGTTGTTT
Statistics
Matches: 953, Mismatches: 49, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
143 4 0.00
144 947 0.99
145 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (144 bp):
CTATTGGAGGATAGATCCAATGCAACTAAATTCCTTAGTCTCCCAATTTCTTGAGGAATGGATCC
ATTAAGTTTGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGA
TTGGACCAACAAGA
Found at i:5222892 original size:18 final size:18
Alignment explanation
Indices: 5222869--5222904 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
5222859 TTTACGCACA
5222869 GAGTATGTAATCAAAGAT
1 GAGTATGTAATCAAAGAT
5222887 GAGTATGTAATCAAAGAT
1 GAGTATGTAATCAAAGAT
5222905 AATTTTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.22, T:0.28
Consensus pattern (18 bp):
GAGTATGTAATCAAAGAT
Found at i:5223262 original size:31 final size:29
Alignment explanation
Indices: 5223227--5223303 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
5223217 TTAATGGCTT
* *
5223227 AGTGACTAAAATGTTACAATACAATAACGTA
1 AGTGACTAAAATGTAACAATAC-A-AACATA
* * *
5223258 AGTGACTAAAACGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACAATACAAACATA
5223287 AGTGACTAAAATGTAAC
1 AGTGACTAAAATGTAAC
5223304 CTAAGGCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
29 21 0.52
30 1 0.03
31 18 0.45
ACGTcount: A:0.48, C:0.14, G:0.13, T:0.25
Consensus pattern (29 bp):
AGTGACTAAAATGTAACAATACAAACATA
Found at i:5223463 original size:17 final size:17
Alignment explanation
Indices: 5223427--5223459 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
5223417 CAAATCCAGT
5223427 AAACTAAACCTAAGCCC
1 AAACTAAACCTAAGCCC
5223444 AAACTAAACCT-AGCCC
1 AAACTAAACCTAAGCCC
5223460 CAAAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.45, C:0.36, G:0.06, T:0.12
Consensus pattern (17 bp):
AAACTAAACCTAAGCCC
Found at i:5227954 original size:3 final size:3
Alignment explanation
Indices: 5227946--5227995 Score: 55
Period size: 3 Copynumber: 15.3 Consensus size: 3
5227936 TCTGTTACTC
*
5227946 CTT CTT CTT CTT CCTT CTAT ACTT CTCT GTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT -CTT CT-T -CTT CT-T CTT CTT CTT CTT CTT CTT CTT
5227995 C
1 C
5227996 AGCACGCATC
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
3 32 0.78
4 7 0.17
5 2 0.05
ACGTcount: A:0.04, C:0.34, G:0.02, T:0.60
Consensus pattern (3 bp):
CTT
Found at i:5229861 original size:6 final size:6
Alignment explanation
Indices: 5229850--5229890 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
5229840 CACTTTAACA
* *
5229850 TAAAAT TAAAAT TAAAAT TAAAAT T-AAAT AAAAAA TAAAAT
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT
5229891 AAGAGATTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
TAAAAT
Found at i:5229873 original size:18 final size:17
Alignment explanation
Indices: 5229849--5229890 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
5229839 CCACTTTAAC
*
5229849 ATAAAATTAAAATTAAAA
1 ATAAAATT-AAATAAAAA
*
5229867 TTAAAATTAAATAAAAA
1 ATAAAATTAAATAAAAA
5229884 ATAAAAT
1 ATAAAAT
5229891 AAGAGATTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
ATAAAATTAAATAAAAA
Found at i:5231070 original size:25 final size:25
Alignment explanation
Indices: 5230990--5231070 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
5230980 AAAGAGATAT
* * *
5230990 ATATGTATATAGATAT-AAATTAAAA
1 ATATATATATA-ATATGTAATTTAAA
* *
5231015 ATATGTATGT-ATATGTGAATTATAAA
1 ATATATATATAATATGT-AATT-TAAA
5231041 ATATATATATAATATGTAATTTAAA
1 ATATATATATAATATGTAATTTAAA
5231066 ATATA
1 ATATA
5231071 AAGAATATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
23 4 0.09
25 22 0.47
26 15 0.32
27 6 0.13
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.41
Consensus pattern (25 bp):
ATATATATATAATATGTAATTTAAA
Found at i:5231339 original size:3 final size:3
Alignment explanation
Indices: 5231331--5231398 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
5231321 GAATTAAAAG
5231331 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
5231379 ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
5231399 TAATTTAGTA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:5235278 original size:56 final size:56
Alignment explanation
Indices: 5235199--5235355 Score: 233
Period size: 56 Copynumber: 2.8 Consensus size: 56
5235189 AGTAGTTACG
*
5235199 TAAGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCTTATAATATCCCAT
1 TAAGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAATATCCCAT
* * * * *
5235255 TAGGAATCAAATTACTAAGAGATAATATCCCATAATAATATCCTATAATATTCTAT
1 TAAGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAATATCCCAT
* * *
5235311 TAAGAATCAAATTGCTAAAAAACAATATCGCATAATAATATCCTA
1 TAAGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTA
5235356 ACAAAAAATT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 89 1.00
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.31
Consensus pattern (56 bp):
TAAGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAATATCCCAT
Found at i:5237406 original size:29 final size:29
Alignment explanation
Indices: 5237369--5237440 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 29
5237359 TTAAGCCCTT
5237369 TTAAA-TTTTAAAAATTATTAAAAAAATA
1 TTAAATTTTTAAAAATTATTAAAAAAATA
* * *
5237397 TTAAATTTTTAAAATTTTTTAAAAAAATT
1 TTAAATTTTTAAAAATTATTAAAAAAATA
5237426 TGTAGAATTTTTAAA
1 T-TA-AATTTTTAAA
5237441 GTTAATTATA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.13
29 21 0.55
30 2 0.05
31 10 0.26
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (29 bp):
TTAAATTTTTAAAAATTATTAAAAAAATA
Found at i:5238628 original size:21 final size:21
Alignment explanation
Indices: 5238600--5238643 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
5238590 TTGGGAACGA
*
5238600 TTAAAATCGTCTCTAA-AAAT
1 TTAAAATCGTCCCTAATAAAT
5238620 TTAAGAATCGTCCCTAATAAAT
1 TTAA-AATCGTCCCTAATAAAT
5238642 TT
1 TT
5238644 TAATAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 11 0.52
22 6 0.29
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (21 bp):
TTAAAATCGTCCCTAATAAAT
Found at i:5250614 original size:20 final size:18
Alignment explanation
Indices: 5250589--5250631 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
5250579 ATAAGTTTAA
*
5250589 AAAATAAAAATTAAACAACT
1 AAAATAAAAAATAAA-AA-T
5250609 AAAATAAAAAATAAAAAT
1 AAAATAAAAAATAAAAAT
5250627 AAAAT
1 AAAAT
5250632 CAGTGATCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
19 2 0.09
20 14 0.64
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.19
Consensus pattern (18 bp):
AAAATAAAAAATAAAAAT
Found at i:5252225 original size:9 final size:9
Alignment explanation
Indices: 5252207--5252255 Score: 55
Period size: 9 Copynumber: 5.3 Consensus size: 9
5252197 ATAATCAAAC
5252207 TAAG-AAAA
1 TAAGAAAAA
5252215 TAAGAAAAA
1 TAAGAAAAA
5252224 TAAGAAAAA
1 TAAGAAAAA
*
5252233 TAAATAATAAA
1 T-AAGAA-AAA
*
5252244 TAATAAAAA
1 TAAGAAAAA
5252253 TAA
1 TAA
5252256 CTAGAAAGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
8 4 0.11
9 20 0.54
10 9 0.24
11 4 0.11
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (9 bp):
TAAGAAAAA
Found at i:5252274 original size:30 final size:29
Alignment explanation
Indices: 5252212--5252277 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
5252202 CAAACTAAGA
* * *
5252212 AAATAAGAAAAATAAGAAAAATAAATAAT
1 AAATAATAAAAATAAGAAAAAGAAAAAAT
* *
5252241 AAATAATAAAAATAACTAGAAAGAAAAAAT
1 AAATAATAAAAATAA-GAAAAAGAAAAAAT
5252271 AAATAAT
1 AAATAAT
5252278 TAAATAAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.18
Consensus pattern (29 bp):
AAATAATAAAAATAAGAAAAAGAAAAAAT
Found at i:5253436 original size:64 final size:64
Alignment explanation
Indices: 5253304--5253445 Score: 164
Period size: 64 Copynumber: 2.2 Consensus size: 64
5253294 GATATGCCTG
* * * * * *
5253304 TGTGTCCAGGCTGTATGGCTCACTGTCGAATATCTCATTTTGTACACGACCTGGGACACACCCG
1 TGTGTCTAGGCCGTATGACTCACTGTCGAATATCTCATTTTGCACACGACCTGAGACACACCCA
* *
5253368 TGTGTCTAGGCCGTATGACTCACTGTCGAATATC-CTATTTTGCGCACGGCCTGAGACATC-CCC
1 TGTGTCTAGGCCGTATGACTCACTGTCGAATATCTC-ATTTTGCACACGACCTGAGACA-CACCC
5253431 A
64 A
5253432 TGTGT-TCAGGCCGT
1 TGTGTCT-AGGCCGT
5253446 GTGGGTTAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
63 2 0.03
64 64 0.96
65 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.24, T:0.29
Consensus pattern (64 bp):
TGTGTCTAGGCCGTATGACTCACTGTCGAATATCTCATTTTGCACACGACCTGAGACACACCCA
Found at i:5253575 original size:76 final size:76
Alignment explanation
Indices: 5253449--5253673 Score: 411
Period size: 76 Copynumber: 3.0 Consensus size: 76
5253439 AGGCCGTGTG
5253449 GGTTAAAAACTCATTTTTTATTTAATTTAATTTTAAATTAGCATGCAGTAAAACTAAAAGAATTA
1 GGTTAAAAACTCATTTTTTATTTAATTTAATTTTAAATTAGCATGCAGTAAAACTAAAAGAATTA
5253514 GCAAAATTTAT
66 GCAAAATTTAT
5253525 GGTTAAAAACTCATTTTTTATTTAATTTAATTTTAAATTAGCATGCAGTAAAACTAAAAGAATTA
1 GGTTAAAAACTCATTTTTTATTTAATTTAATTTTAAATTAGCATGCAGTAAAACTAAAAGAATTA
5253590 GCAAAATTTAT
66 GCAAAATTTAT
* *
5253601 GGTTAAAAACTCA--TTTT-TTTAATTTAATTCTAAATTAACATGCAGTAAAACTAAAAGAATTA
1 GGTTAAAAACTCATTTTTTATTTAATTTAATTTTAAATTAGCATGCAGTAAAACTAAAAGAATTA
5253663 GCAAAATTTAT
66 GCAAAATTTAT
5253674 ACACCCGGGT
Statistics
Matches: 147, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
73 54 0.37
74 4 0.03
76 89 0.61
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.39
Consensus pattern (76 bp):
GGTTAAAAACTCATTTTTTATTTAATTTAATTTTAAATTAGCATGCAGTAAAACTAAAAGAATTA
GCAAAATTTAT
Found at i:5266368 original size:17 final size:17
Alignment explanation
Indices: 5266336--5266369 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
5266326 CAAATTTTAT
* *
5266336 ATTATTATTGTTATTGC
1 ATTATTATTATAATTGC
5266353 ATTATTATTATAATTGC
1 ATTATTATTATAATTGC
5266370 TTTTATAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.56
Consensus pattern (17 bp):
ATTATTATTATAATTGC
Found at i:5266395 original size:22 final size:22
Alignment explanation
Indices: 5266370--5266412 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
5266360 TTATAATTGC
5266370 TTTTATAGATATATACATATAT
1 TTTTATAGATATATACATATAT
* * *
5266392 TTTTATATATTTTTACATATA
1 TTTTATAGATATATACATATA
5266413 CTTATACACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTTATAGATATATACATATAT
Found at i:5266552 original size:24 final size:24
Alignment explanation
Indices: 5266525--5266579 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
5266515 ATTTCTAACC
5266525 TTTATAAATATATATATACATATT
1 TTTATAAATATATATATACATATT
* * *
5266549 TTTACATATATATATGTACATATT
1 TTTATAAATATATATATACATATT
5266573 TTATATA
1 TT-TATA
5266580 TTTTATAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (24 bp):
TTTATAAATATATATATACATATT
Found at i:5269826 original size:7 final size:7
Alignment explanation
Indices: 5269810--5269846 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
5269800 ATACGCTATC
*
5269810 TCTTTGT
1 TCTTTAT
5269817 TCTTTAT
1 TCTTTAT
5269824 TCTTTAT
1 TCTTTAT
5269831 TCTTTAT
1 TCTTTAT
5269838 TCTTCTAT
1 TCTT-TAT
5269846 T
1 T
5269847 TTATAACACG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
7 24 0.86
8 4 0.14
ACGTcount: A:0.11, C:0.16, G:0.03, T:0.70
Consensus pattern (7 bp):
TCTTTAT
Found at i:5273126 original size:4 final size:4
Alignment explanation
Indices: 5273117--5273168 Score: 63
Period size: 4 Copynumber: 13.2 Consensus size: 4
5273107 ATCGGGCATC
* *
5273117 TATT TATT TATT TATTT TATT TATT TATC TA-T TA-T TATT TATT TATG
1 TATT TATT TATT TA-TT TATT TATT TATT TATT TATT TATT TATT TATT
5273164 TATT T
1 TATT T
5273169 TATTACAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
3 5 0.12
4 33 0.79
5 4 0.10
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (4 bp):
TATT
Found at i:5277530 original size:45 final size:45
Alignment explanation
Indices: 5277455--5277636 Score: 262
Period size: 45 Copynumber: 4.1 Consensus size: 45
5277445 AACAGTTACA
* * *
5277455 CGGTGG-ATCAGCACACAGC-ACCACAC-TTATAGTCAATGATACT
1 CGGTGGAATCAGCACATAGCAACCAC-CTTTATAATCAATGATACC
5277498 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACC
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACC
* * *
5277543 CGGTGGAATCAGCACATAGTAACCACCTTTATAATCAATGGTACA
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACC
* *
5277588 CGGTGGAATTAGCACATAGCAACCACTTTTATAATCAATGATACC
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACC
5277633 CGGT
1 CGGT
5277637 AAACATAGTA
Statistics
Matches: 125, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
43 6 0.05
44 13 0.10
45 106 0.85
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.24
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACC
Done.