Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 28 of 168
Found at i:7389855 original size:38 final size:37
Alignment explanation
Indices: 7389794--7389937 Score: 147
Period size: 38 Copynumber: 3.9 Consensus size: 37
7389784 TTAATACACT
* * *
7389794 GCACTAAGCTTGCTAGGCACAAAGCCTGGATAACACCG
1 GCACAAAGCCTGCTAGG-ACAAAGCCTGAATAACACCG
*
7389832 GCACAAAGCCTGCTAGGAGCAAAGCTTGAATAACACCG
1 GCACAAAGCCTGCTAGGA-CAAAGCCTGAATAACACCG
* *
7389870 GCACAAAGCCTGCTAAGCACAAAGCCTG-CT---A--G
1 GCACAAAGCCTGCT-AGGACAAAGCCTGAATAACACCG
*
7389902 GCACAAAACCTGCTAGGCACAAAGCCTGAATAACAC
1 GCACAAAGCCTGCTAGG-ACAAAGCCTGAATAACAC
7389938 TATAATTAAA
Statistics
Matches: 88, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
31 2 0.02
32 24 0.27
33 1 0.01
34 1 0.01
36 1 0.01
37 2 0.02
38 54 0.61
39 3 0.03
ACGTcount: A:0.36, C:0.29, G:0.22, T:0.13
Consensus pattern (37 bp):
GCACAAAGCCTGCTAGGACAAAGCCTGAATAACACCG
Found at i:7389891 original size:16 final size:16
Alignment explanation
Indices: 7389869--7389929 Score: 104
Period size: 16 Copynumber: 3.8 Consensus size: 16
7389859 GAATAACACC
7389869 GGCACAAAGCCTGCTA
1 GGCACAAAGCCTGCTA
*
7389885 AGCACAAAGCCTGCTA
1 GGCACAAAGCCTGCTA
*
7389901 GGCACAAAACCTGCTA
1 GGCACAAAGCCTGCTA
7389917 GGCACAAAGCCTG
1 GGCACAAAGCCTG
7389930 AATAACACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.34, C:0.31, G:0.23, T:0.11
Consensus pattern (16 bp):
GGCACAAAGCCTGCTA
Found at i:7390533 original size:19 final size:19
Alignment explanation
Indices: 7390509--7390549 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7390499 TCAAGCTCCC
7390509 TCCTTCAATGGTGTATTCG
1 TCCTTCAATGGTGTATTCG
7390528 TCCTTCAATGGTGTATTCG
1 TCCTTCAATGGTGTATTCG
7390547 TCC
1 TCC
7390550 AAGCAAGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.41
Consensus pattern (19 bp):
TCCTTCAATGGTGTATTCG
Found at i:7394593 original size:18 final size:18
Alignment explanation
Indices: 7394566--7394617 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
7394556 ATTACCGAGT
7394566 GATCGCAGACAAACGTAC
1 GATCGCAGACAAACGTAC
* *
7394584 GATCGTAGACAAACGTAT
1 GATCGCAGACAAACGTAC
7394602 GATCGCAGACAAACGT
1 GATCGCAGACAAACGT
7394618 GGGGCAACAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (18 bp):
GATCGCAGACAAACGTAC
Found at i:7407234 original size:18 final size:18
Alignment explanation
Indices: 7407213--7407257 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
7407203 CATTCGTTTC
7407213 CAAAACATTATTC-ATTT
1 CAAAACATTATTCAATTT
* *
7407230 ACAAATCGTTATTCAATTT
1 -CAAAACATTATTCAATTT
7407249 CAAAACATT
1 CAAAACATT
7407258 TTCTTATTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.38
Consensus pattern (18 bp):
CAAAACATTATTCAATTT
Found at i:7408229 original size:17 final size:18
Alignment explanation
Indices: 7408197--7408231 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7408187 CCATGATGTT
*
7408197 CGCCTGTGTGGGCCCACA
1 CGCCCGTGTGGGCCCACA
7408215 CGCCCGTGT-GGCCCACA
1 CGCCCGTGTGGGCCCACA
7408232 TGACCCATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.11, C:0.43, G:0.31, T:0.14
Consensus pattern (18 bp):
CGCCCGTGTGGGCCCACA
Found at i:7412506 original size:21 final size:21
Alignment explanation
Indices: 7412480--7412535 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
7412470 AATAGCGGTG
*
7412480 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
7412501 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
7412522 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
7412536 AACAGCGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:7425139 original size:17 final size:17
Alignment explanation
Indices: 7425117--7425154 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7425107 TATAGTAAAG
7425117 ATAAATT-AAGAATCGAA
1 ATAAATTGAAGAATC-AA
*
7425134 ATAAATTGTAGAATCAA
1 ATAAATTGAAGAATCAA
7425151 ATAA
1 ATAA
7425155 TTATAGGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.58, C:0.05, G:0.11, T:0.26
Consensus pattern (17 bp):
ATAAATTGAAGAATCAA
Found at i:7430407 original size:40 final size:40
Alignment explanation
Indices: 7430352--7430432 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
7430342 AAATAAATTT
7430352 ATAAGAAATTAACGAAGGTTTCAAGGCATGTATCAATGTC
1 ATAAGAAATTAACGAAGGTTTCAAGGCATGTATCAATGTC
7430392 ATAAGAAATTAACGAAGGTTTCAAGGCATGTATCAATGTC
1 ATAAGAAATTAACGAAGGTTTCAAGGCATGTATCAATGTC
7430432 A
1 A
7430433 CTTATATTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (40 bp):
ATAAGAAATTAACGAAGGTTTCAAGGCATGTATCAATGTC
Found at i:7431537 original size:2 final size:2
Alignment explanation
Indices: 7431518--7431575 Score: 70
Period size: 2 Copynumber: 30.0 Consensus size: 2
7431508 GTATTATTGC
7431518 AT AT A- AT AGT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7431559 AT AT A- AGT A- AT AT AT AT
1 AT AT AT A-T AT AT AT AT AT
7431576 TATGCTTTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
1 4 0.08
2 43 0.86
3 3 0.06
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7431648 original size:15 final size:18
Alignment explanation
Indices: 7431613--7431649 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7431603 TATAAATGTT
7431613 ATAATAATAAGATAAGTA
1 ATAATAATAAGATAAGTA
7431631 ATAATAA-AAGA-AAG-A
1 ATAATAATAAGATAAGTA
7431646 ATAA
1 ATAA
7431650 AGAAATTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 5 0.26
16 3 0.16
17 4 0.21
18 7 0.37
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.22
Consensus pattern (18 bp):
ATAATAATAAGATAAGTA
Found at i:7433129 original size:25 final size:25
Alignment explanation
Indices: 7433101--7433174 Score: 130
Period size: 25 Copynumber: 3.0 Consensus size: 25
7433091 TACATCTCTC
*
7433101 ATGAGCTTACCGATTTTCAGCTCGT
1 ATGAGCTTACCGATTCTCAGCTCGT
7433126 ATGAGCTTACCGATTCTCAGCTCGT
1 ATGAGCTTACCGATTCTCAGCTCGT
*
7433151 ATGAGCTTACCGATTCACAGCTCG
1 ATGAGCTTACCGATTCTCAGCTCG
7433175 AGAGAGCATA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (25 bp):
ATGAGCTTACCGATTCTCAGCTCGT
Found at i:7433186 original size:25 final size:25
Alignment explanation
Indices: 7433103--7433192 Score: 101
Period size: 25 Copynumber: 3.6 Consensus size: 25
7433093 CATCTCTCAT
** *
7433103 GAGCTTACCGATTTTCAGCTCGTAT
1 GAGCTTACCGATTCACAGCTCGTAA
* *
7433128 GAGCTTACCGATTCTCAGCTCGTAT
1 GAGCTTACCGATTCACAGCTCGTAA
7433153 GAGCTTACCGATTCACAGCTCG-AGA
1 GAGCTTACCGATTCACAGCTCGTA-A
* *
7433178 GAGCATACCAATTCA
1 GAGCTTACCGATTCA
7433193 TTGATCATAT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
24 1 0.02
25 58 0.98
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (25 bp):
GAGCTTACCGATTCACAGCTCGTAA
Found at i:7437845 original size:26 final size:26
Alignment explanation
Indices: 7437816--7437877 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
7437806 ATCCTGTAAG
*
7437816 TGTTCTGAAACTGATACATGCTATGA
1 TGTTCTGAAACTGATAAATGCTATGA
* *
7437842 TGTTATGAAACTGATAAATGTTATGA
1 TGTTCTGAAACTGATAAATGCTATGA
*
7437868 TATTCTGAAA
1 TGTTCTGAAA
7437878 TTACTGTAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (26 bp):
TGTTCTGAAACTGATAAATGCTATGA
Found at i:7441676 original size:16 final size:16
Alignment explanation
Indices: 7441655--7441712 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
7441645 TATACAATTT
7441655 ATTTATTTTATATATA
1 ATTTATTTTATATATA
* *
7441671 ATTTATTCTATATGTAA
1 ATTTATTTTATATAT-A
* * *
7441688 ATTT-TTGTACATATT
1 ATTTATTTTATATATA
7441703 ATTTATTTTA
1 ATTTATTTTA
7441713 AAAAAATCGT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
15 4 0.12
16 24 0.73
17 5 0.15
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (16 bp):
ATTTATTTTATATATA
Found at i:7443699 original size:18 final size:18
Alignment explanation
Indices: 7443667--7443708 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
7443657 AGATATGTGT
7443667 ATTTTTTTTCTTCACTAAG
1 ATTTTTTTTCTTCAC-AAG
7443686 ATTTTTTTTC-TCACAAG
1 ATTTTTTTTCTTCACAAG
*
7443703 GTTTTT
1 ATTTTT
7443709 ATCTTAGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 4 0.18
19 10 0.45
ACGTcount: A:0.19, C:0.14, G:0.07, T:0.60
Consensus pattern (18 bp):
ATTTTTTTTCTTCACAAG
Found at i:7443887 original size:26 final size:26
Alignment explanation
Indices: 7443851--7443900 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
7443841 TTAGAAGTAG
7443851 ACTTCATTTATACTTCTTATGTCTCT
1 ACTTCATTTATACTTCTTATGTCTCT
*
7443877 ACTTTATTTATACTTCTTATGTCT
1 ACTTCATTTATACTTCTTATGTCT
7443901 ATAAATAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.20, C:0.20, G:0.04, T:0.56
Consensus pattern (26 bp):
ACTTCATTTATACTTCTTATGTCTCT
Found at i:7444030 original size:8 final size:9
Alignment explanation
Indices: 7444020--7444087 Score: 77
Period size: 9 Copynumber: 7.3 Consensus size: 9
7444010 CATTTTTATA
7444020 TTTTTTAAT
1 TTTTTTAAT
7444029 TTTTTTAAT
1 TTTTTTAAT
7444038 TTTTTTAAT
1 TTTTTTAAT
*
7444047 TTTTTT-CT
1 TTTTTTAAT
7444055 TATTTTTGAAT
1 T-TTTTT-AAT
7444066 TTATATTTAA-
1 TT-T-TTTAAT
7444076 TTTTTTAAT
1 TTTTTTAAT
7444085 TTT
1 TTT
7444088 AATAAATTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
8 7 0.14
9 33 0.65
10 3 0.06
11 5 0.10
12 3 0.06
ACGTcount: A:0.22, C:0.01, G:0.01, T:0.75
Consensus pattern (9 bp):
TTTTTTAAT
Found at i:7444033 original size:18 final size:17
Alignment explanation
Indices: 7444012--7444087 Score: 80
Period size: 19 Copynumber: 4.1 Consensus size: 17
7444002 TTTTATAACA
7444012 TTTTTATATTTTTTAATT
1 TTTTTA-ATTTTTTAATT
7444030 TTTTTAATTTTTTTAATTT
1 TTTTTAA-TTTTTTAA-TT
* *
7444049 TTTTCTTATTTTTGAATT
1 TTTT-TAATTTTTTAATT
7444067 TATATTTAATTTTTTAATT
1 T-T-TTTAATTTTTTAATT
7444086 TT
1 TT
7444088 AATAAATTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
17 1 0.02
18 18 0.37
19 26 0.53
20 4 0.08
ACGTcount: A:0.22, C:0.01, G:0.01, T:0.75
Consensus pattern (17 bp):
TTTTTAATTTTTTAATT
Found at i:7444095 original size:18 final size:18
Alignment explanation
Indices: 7444019--7444095 Score: 64
Period size: 18 Copynumber: 4.2 Consensus size: 18
7444009 ACATTTTTAT
*
7444019 ATTTTTTAATTTTTTTAA
1 ATTTTTTAATTTTATTAA
* * **
7444037 TTTTTTTAATTTTTTTCTT
1 ATTTTTTAATTTTATT-AA
* *
7444056 ATTTTTGAATTTATATTTA
1 ATTTTTTAATTT-TATTAA
*
7444075 ATTTTTTAATTTTAATAA
1 ATTTTTTAATTTTATTAA
7444093 ATT
1 ATT
7444096 CAAATGCCAC
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
18 22 0.47
19 22 0.47
20 3 0.06
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.70
Consensus pattern (18 bp):
ATTTTTTAATTTTATTAA
Found at i:7448025 original size:17 final size:16
Alignment explanation
Indices: 7447986--7448029 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
7447976 ATGTGATGTG
* *
7447986 ATCTAAATATATGCAA
1 ATCTAAATATGTGAAA
7448002 A-CTAAATATGTGAATA
1 ATCTAAATATGTGAA-A
7448018 ATCTAAATATGT
1 ATCTAAATATGT
7448030 TAAATTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 11 0.46
16 3 0.12
17 10 0.42
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (16 bp):
ATCTAAATATGTGAAA
Found at i:7451684 original size:31 final size:29
Alignment explanation
Indices: 7451628--7451688 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 29
7451618 TTAAATTGAT
7451628 CATTTTAATATCATTATTACTATTATATTA
1 CATTTTAATATCATTATTACTATTAT-TTA
*
7451658 CATTGTTAATATTATTATTA-TCATTATTTA
1 CATT-TTAATATCATTATTACT-ATTATTTA
7451688 C
1 C
7451689 TCATTTATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 9 0.32
31 19 0.68
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.54
Consensus pattern (29 bp):
CATTTTAATATCATTATTACTATTATTTA
Found at i:7451730 original size:4 final size:4
Alignment explanation
Indices: 7451721--7451802 Score: 164
Period size: 4 Copynumber: 20.5 Consensus size: 4
7451711 AAATTTTGTT
7451721 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7451769 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
7451803 TTTTTATAAT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 78 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:7451844 original size:27 final size:28
Alignment explanation
Indices: 7451789--7451855 Score: 84
Period size: 27 Copynumber: 2.4 Consensus size: 28
7451779 ACATACATAC
7451789 ATACATACATACATTTTTTATAATATAT
1 ATACATACATACATTTTTTATAATATAT
* *
7451817 ATACGTACATA-ATTTTTT-TAAATTTAT
1 ATACATACATACATTTTTTAT-AATATAT
*
7451844 ATATATACATAC
1 ATACATACATAC
7451856 CTATATATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.03
27 22 0.67
28 10 0.30
ACGTcount: A:0.42, C:0.10, G:0.01, T:0.46
Consensus pattern (28 bp):
ATACATACATACATTTTTTATAATATAT
Found at i:7452032 original size:22 final size:22
Alignment explanation
Indices: 7452006--7452050 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7451996 TGTTATTTAC
7452006 ATGTTCATTATTATTTTGAAAG
1 ATGTTCATTATTATTTTGAAAG
7452028 ATGTTCATTATTATTTTGAAAG
1 ATGTTCATTATTATTTTGAAAG
7452050 A
1 A
7452051 ACGTTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.49
Consensus pattern (22 bp):
ATGTTCATTATTATTTTGAAAG
Found at i:7452475 original size:73 final size:74
Alignment explanation
Indices: 7452355--7452497 Score: 245
Period size: 73 Copynumber: 1.9 Consensus size: 74
7452345 TATTTTCAAA
* *
7452355 CTCAAGTTTTAAACGATCTTGGGAATTAAGAAGAGATCGTGTCCTAACTTACT-GGCATGATCCC
1 CTCAAGTTTTAAACGAACTTGGGAATTAAGAAAAGATCGTGTCCTAACTTACTCGGCATGAT-CC
7452419 TTTTTTTTCT
65 TTTTTTTTCT
7452429 CTCAAGTTTTAAACGAACTT-GGAATTAAGAAAAGATCGTGTCCTAACTTACTCGGCATGATCCT
1 CTCAAGTTTTAAACGAACTTGGGAATTAAGAAAAGATCGTGTCCTAACTTACTCGGCATGATCCT
7452493 TTTTT
66 TTTTT
7452498 AAATCCGAGA
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
73 39 0.59
74 27 0.41
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (74 bp):
CTCAAGTTTTAAACGAACTTGGGAATTAAGAAAAGATCGTGTCCTAACTTACTCGGCATGATCCT
TTTTTTTCT
Found at i:7455428 original size:13 final size:12
Alignment explanation
Indices: 7455408--7455441 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
7455398 AAAATATTTC
7455408 AAAAAAAAGAAA
1 AAAAAAAAGAAA
7455420 AAAAGAAAAGAAA
1 AAAA-AAAAGAAA
*
7455433 AAGAAAAAG
1 AAAAAAAAG
7455442 GAGAGGTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:7456978 original size:132 final size:132
Alignment explanation
Indices: 7456823--7457437 Score: 838
Period size: 132 Copynumber: 4.7 Consensus size: 132
7456813 AGATCAAAAG
* * * * *
7456823 CACCAGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAAATCATATCTCCCTAAG
1 CACCAGTCTTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAG
* * * *
7456888 CAGTAGTAGAGAAGATCGAAGCCGACGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
66 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
7456953 GC
131 GC
* *
7456955 CACCAGTCTTATCTCCCTGAGCAGCAGTACAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAG
1 CACCAGTCTTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAG
* * * *
7457020 CAGTAGTGGAGCAGGTTGAATACGACAAATCTTATCTTCCCAAGGTAGTAGGAAAGCAGATTTAA
66 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
7457085 GC
131 GC
* *
7457087 CACCGGT-TCTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCATGTATCCCTAA
1 CACCAGTCT-TATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAA
* * * *
7457151 GCAGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTA
65 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTA
*
7457216 GGC
130 AGC
* * * *
7457219 CACCAAT-TCTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAGGATTGTAGATCTTGTCTACCTAA
1 CACCAGTCT-TATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAA
* * * *** *
7457283 GAAGTAGAGGAGTAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTA
65 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTA
7457348 AGC
130 AGC
* * * * * *
7457351 CACCAGTCCTATCTCCCTGAGTAGCTGTGGAGTATGTTGAAGATTGTAGATCCTGTCTCCCTAAG
1 CACCAGTCTTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAG
*
7457416 CAGTAGTGGAGCAGATCAAAGA
66 CAGTAGTGGAGCAGATCGAAGA
7457438 AAGCGACTCT
Statistics
Matches: 424, Mismatches: 57, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
131 1 0.00
132 423 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
CACCAGTCTTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAG
CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
GC
Found at i:7457601 original size:51 final size:51
Alignment explanation
Indices: 7457537--7457688 Score: 178
Period size: 51 Copynumber: 3.0 Consensus size: 51
7457527 TTAAAGCTGA
* * * *
7457537 AGTGGAGCGGATTAAAGCTGAAGGTAGTGAATCCTATCTCCTTGGTGTTAC
1 AGTGGAGCAGATTAAAGCTGAAGGTAGCGAATCTTATCTCCCTGGTGTTAC
* * * * * *
7457588 AGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGTATTGC
1 AGTGGAGCAGATTAAAGCTGAAGGTAGCGAATCTTATCTCCCTGGTGTTAC
** * *
7457639 AGCAGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGGCGTTA
1 AGTGGAGCAGATTAAAGCTGAAGGTAGCGAATCTTATCTCCCTGGTGTTA
7457689 AAGTTGAAGT
Statistics
Matches: 81, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 81 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (51 bp):
AGTGGAGCAGATTAAAGCTGAAGGTAGCGAATCTTATCTCCCTGGTGTTAC
Found at i:7457759 original size:44 final size:45
Alignment explanation
Indices: 7457709--7457835 Score: 143
Period size: 44 Copynumber: 2.8 Consensus size: 45
7457699 CGTCATGGCG
* * *
7457709 AATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTGAAATC-ACT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAATCGACA
* * * *
7457753 AATCTTATCCCCCTGAAGTTGCAGTGGGGCAGATTG--ATCGTACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAATCG-ACA
*
7457797 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGAAGACTGAA
1 AA-TCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAA
7457836 GATAGTGAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 3 0.04
44 35 0.52
45 29 0.43
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (45 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAATCGACA
Found at i:7458076 original size:45 final size:44
Alignment explanation
Indices: 7458025--7458192 Score: 180
Period size: 44 Copynumber: 3.8 Consensus size: 44
7458015 AAAGATGGGA
*
7458025 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCAAC
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCAAAC
** *
7458069 AAGTCTTATCTCCCTAAAGTTATAGTGGAGCAGACTG-A-CTAAACC
1 AA-TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGC-AAA-C
* * **
7458114 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TTAC
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCAAAC
* * *
7458157 TAATCCTACCTCCCTGAAGTTGCAGTGGAGCAGATT
1 -AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT
7458193 AAAATGATGG
Statistics
Matches: 105, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
43 2 0.02
44 68 0.65
45 35 0.33
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCAAAC
Found at i:7458230 original size:44 final size:44
Alignment explanation
Indices: 7457982--7458218 Score: 171
Period size: 44 Copynumber: 5.3 Consensus size: 44
7457972 AGAAAGTAAG
* ***
7457982 TCTTATC-CCTCTGAAGTTGCAGTGG-GACAGACTAAAGATGGGAAA
1 TCTTATCTCC-CTGAAGTTGCAGTGGAG-CAGATTAAA-ATGACTAA
* ****
7458027 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCAAC-AA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATGACTAA
* ** * * *
7458071 GTCTTATCTCCCTAAAGTTATAGTGGAGCAGACTGACTAA--ACCAA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAATGACTAA
* *
7458116 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACTAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATGACTAA
* * *
7458160 TCCTACCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATGA-TGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATGACT-AA
*
7458204 TCTTATCTCTCTGAA
1 TCTTATCTCCCTGAA
7458219 ATTGTAATGG
Statistics
Matches: 153, Mismatches: 29, Indels: 21
0.75 0.14 0.10
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 85 0.56
45 58 0.38
46 6 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATGACTAA
Found at i:7458350 original size:51 final size:51
Alignment explanation
Indices: 7458268--7458367 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 51
7458258 TTGGCGTTAT
* * * * *
7458268 AGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGC
1 AGTGGAACAAATTAAAGCTAAAGGCAACGAATCTTATCTCCCTGGCATTGC
* *
7458319 AGTGGAGCAAATTAAAGCTGAAGGCAACGAATCTTATCTCCCTGGCATT
1 AGTGGAACAAATTAAAGCTAAAGGCAACGAATCTTATCTCCCTGGCATT
7458368 AAAATTGAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (51 bp):
AGTGGAACAAATTAAAGCTAAAGGCAACGAATCTTATCTCCCTGGCATTGC
Found at i:7458459 original size:404 final size:403
Alignment explanation
Indices: 7457848--7458615 Score: 1221
Period size: 404 Copynumber: 1.9 Consensus size: 403
7457838 TAGTGAATCC
7457848 TATCCCATTGGCGTTACAGTGGAACAGATTAAAACTAAAGGTAGCGAATCTTGTTTCCCTGCATT
1 TATCCCATTGGCGTTACAGTGGAACAGATTAAAACTAAAGGTAGCGAATCTTGTTTCCCTGCATT
* * *
7457913 GCAGCGGAGCAGATTAAAGCTGAAGGCAGCAAATCTTATCTCTCTGGCATTAAAATTGAAGAAAG
66 GCAGCGGAGCAAATTAAAGCTGAAGGCAACAAATCTTATCTCCCTGGCATTAAAATTGAAGAAAG
* * * * *
7457978 TAAGTCTTATCCCTCTGAAGTTGCAGTGGGACAGACTAAAGATGGGAAATCTTATCTCCCTAAAG
131 TAAGTCTTATCCCCCTAAAGTTGCAATGGGACAGACTAAAGATAGCAAATCTTATCTCCCTAAAG
* * * *
7458043 TTGCAGTGGAGCAGATTGAAGCCAACAAGTCTTATCTCCCTAAAGTTATAGTGGAGCAGACTGAC
196 TTGCAGTGGAGCAGATTAAAGCCAACAAGTCTTATCTCCCTAAAGTCACAGTGAAGCAGACTGAC
* * *
7458108 TAAACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACTAATCCTACCTCCCTG
261 TAAACCAATCTTATCTCCCTAAAGTTGCAGTGGAACAAATTAAAGTTACTAATCCTACCTCCCTG
*
7458173 AAGTTGCAGTGGAGCAGATTAAAATGATGGATCTTATCTCTCTGAAATTGTAATGGAGTGGATTG
326 AAGTTGCAGTGGAGCAGATTAAAATGATGAATCTTATCTCTCTGAAATTGTAATGGAGTGGATTG
7458238 AAGACACCAGACT
391 AAGACACCAGACT
* * *
7458251 TATCTCATTGGCGTTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCAT
1 TATCCCATTGGCGTTACAGTGGAACAGATTAAAACTAAAGGTAGCGAATCTTGTTTCCCT-GCAT
* *
7458316 TGCAGTGGAGCAAATTAAAGCTGAAGGCAACGAATCTTATCTCCCTGGCATTAAAATTGAAGAAA
65 TGCAGCGGAGCAAATTAAAGCTGAAGGCAACAAATCTTATCTCCCTGGCATTAAAATTGAAGAAA
* * *
7458381 GTAAGTCTTATCCCCCTAAAGTTGCAATGGGGCAGACTGAAGATAGCAAATCTTATCTCCCTGAA
130 GTAAGTCTTATCCCCCTAAAGTTGCAATGGGACAGACTAAAGATAGCAAATCTTATCTCCCTAAA
* * *
7458446 GTTGCAGTGGAGCAGATTAAAGCCAACAAGTCTTATCTCTCTGAAGTCGCAGTGAAGCAGACTGA
195 GTTGCAGTGGAGCAGATTAAAGCCAACAAGTCTTATCTCCCTAAAGTCACAGTGAAGCAGACTGA
* * * * * *
7458511 CTAATCCAATCTTATTTCCCTAAAGTTGTAGTGGAACAAATTGAAGTTACTAGTCCTATCTCCCT
260 CTAAACCAATCTTATCTCCCTAAAGTTGCAGTGGAACAAATTAAAGTTACTAATCCTACCTCCCT
*
7458576 GAAGTTGCAGTGGAGCGGATTAAAATGATGAATCTTATCT
325 GAAGTTGCAGTGGAGCAGATTAAAATGATGAATCTTATCT
7458616 ATCTAAAGTT
Statistics
Matches: 330, Mismatches: 34, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
403 57 0.17
404 273 0.83
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (403 bp):
TATCCCATTGGCGTTACAGTGGAACAGATTAAAACTAAAGGTAGCGAATCTTGTTTCCCTGCATT
GCAGCGGAGCAAATTAAAGCTGAAGGCAACAAATCTTATCTCCCTGGCATTAAAATTGAAGAAAG
TAAGTCTTATCCCCCTAAAGTTGCAATGGGACAGACTAAAGATAGCAAATCTTATCTCCCTAAAG
TTGCAGTGGAGCAGATTAAAGCCAACAAGTCTTATCTCCCTAAAGTCACAGTGAAGCAGACTGAC
TAAACCAATCTTATCTCCCTAAAGTTGCAGTGGAACAAATTAAAGTTACTAATCCTACCTCCCTG
AAGTTGCAGTGGAGCAGATTAAAATGATGAATCTTATCTCTCTGAAATTGTAATGGAGTGGATTG
AAGACACCAGACT
Found at i:7458480 original size:45 final size:45
Alignment explanation
Indices: 7458383--7458599 Score: 163
Period size: 45 Copynumber: 4.9 Consensus size: 45
7458373 TGAAGAAAGT
* * * * * * * *
7458383 AAGTCTTATCCCCCTAAAGTTGCAATGGGGCAGACTGAAGATAGC
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAC
* *
7458428 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAC
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAC
* * * * *
7458473 AAGTCTTATCTCTCTGAAGTCGCAGTGAAGCAGACT-GA-CTAATCC
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAA--C
* * * * * * *
7458518 AA-TCTTATTTCCCTAAAGTTGTAGTGGAACAAATTGAAG-TTAC
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAC
* * *
7458561 TAGTCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
7458600 ATGATGAATC
Statistics
Matches: 130, Mismatches: 37, Indels: 11
0.73 0.21 0.06
Matches are distributed among these distances:
43 5 0.04
44 53 0.41
45 72 0.55
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (45 bp):
AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAC
Found at i:7458615 original size:44 final size:44
Alignment explanation
Indices: 7458429--7458639 Score: 140
Period size: 44 Copynumber: 4.8 Consensus size: 44
7458419 GAAGATAGCA
*
7458429 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA-C
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TAATC
* * * * * *
7458473 AAGTCTTATCTCTCTGAAGTCGCAGTGAAGCAGACT-GACTAATCC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAT-C
* * * * * * *
7458518 AATCTTATTTCCCTAAAGTTGTAGTGGAACAAATTGAAGTTA-C
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAATC
* * * * * *
7458561 TAGTCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGATG
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAATC
** * * *
7458606 AATCTTATCTATCTAAAGTTGCAATAGAGCAGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
7458640 CGCATTAGAC
Statistics
Matches: 122, Mismatches: 39, Indels: 12
0.71 0.23 0.07
Matches are distributed among these distances:
43 3 0.02
44 84 0.69
45 35 0.29
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAATC
Found at i:7458957 original size:138 final size:135
Alignment explanation
Indices: 7458712--7459013 Score: 408
Period size: 138 Copynumber: 2.2 Consensus size: 135
7458702 AGATAGCATA
* *
7458712 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACGATAAGTCCTATCTCCCTCAAGTTACAGTG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATAACGATAAGTCCTATCTCCCTCAAGTTACAGTG
* *
7458777 GACCGGATTAAAATGATAAATCCTATACATCTAAATTTGCAGTAGGTCAGATTAAATCTACCATA
66 AACCGGATTAAAATGATAAATCCTATACATCTAAAGTTGCAGTAGGTCAGATTAAATCTACCATA
*
7458842 ATAAG
131 ACAAG
* * *
7458847 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGCTACTAA-TCCTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-T-AA-CGA-TAAGTCCTATCTCCCTCAAGTTAC
* * * * *
7458911 AGTGAAGCGGATTAAAATGATGAATCCTATACTTCTGAAGTTGCAGTAGGTCAGGTTAAATCTAC
62 AGTGAACCGGATTAAAATGATAAATCCTATACATCTAAAGTTGCAGTAGGTCAGATTAAATCTAC
*
7458976 CATGACAAG
127 CATAACAAG
* * *
7458985 TCTTATCTCCCTGACGTTGTAGTGGAGCA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCA
7459014 AACTAAAACC
Statistics
Matches: 146, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
135 30 0.21
136 1 0.01
137 1 0.01
138 111 0.76
139 3 0.02
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (135 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATAACGATAAGTCCTATCTCCCTCAAGTTACAGTG
AACCGGATTAAAATGATAAATCCTATACATCTAAAGTTGCAGTAGGTCAGATTAAATCTACCATA
ACAAG
Found at i:7459041 original size:138 final size:138
Alignment explanation
Indices: 7458712--7459049 Score: 387
Period size: 138 Copynumber: 2.5 Consensus size: 138
7458702 AGATAGCATA
* * * * * * * *
7458712 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T--CACGATAAGTCCTATCTCCCTCAAGTTACA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAAACTAAAACCACAAATCCTATCCCCCTGAAGTTACA
* *
7458774 GTGGACCGGATTAAAATGATAAATCCTATACATCTAAATTTGCAGTAGGTCAGATTAAATCTACC
66 GTGAACCGGATTAAAATGATAAATCCTATACATCTAAAGTTGCAGTAGGTCAGATTAAATCTACC
*
7458839 ATAATAAG
131 ATAACAAG
* * * * * * *
7458847 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGCTACTAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAAACTAAAACCACAAATCCTATCCCCCTGAAGTTACA
* * * * *
7458912 GTGAAGCGGATTAAAATGATGAATCCTATACTTCTGAAGTTGCAGTAGGTCAGGTTAAATCTACC
66 GTGAACCGGATTAAAATGATAAATCCTATACATCTAAAGTTGCAGTAGGTCAGATTAAATCTACC
*
7458977 ATGACAAG
131 ATAACAAG
* * * *
7458985 TCTTATCTCCCTGACGTTGTAGTGGAGCAAACTAAAACCACAAAT-CTCGTCCCCCTGAAGTTAC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAAACTAAAACCACAAATCCT-ATCCCCCTGAAGTTAC
7459049 A
65 A
7459050 ATAGAGTGGA
Statistics
Matches: 170, Mismatches: 29, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
135 30 0.18
136 1 0.01
137 2 0.01
138 137 0.81
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (138 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAGCAAACTAAAACCACAAATCCTATCCCCCTGAAGTTACA
GTGAACCGGATTAAAATGATAAATCCTATACATCTAAAGTTGCAGTAGGTCAGATTAAATCTACC
ATAACAAG
Found at i:7460536 original size:31 final size:29
Alignment explanation
Indices: 7460480--7460540 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 29
7460470 TTAAATTGAT
7460480 CATTTTAATATCATTATTACTATTATATTA
1 CATTTTAATATCATTATTACTATTAT-TTA
*
7460510 CATTGTTAATATTATTATTA-TCATTATTTA
1 CATT-TTAATATCATTATTACT-ATTATTTA
7460540 C
1 C
7460541 TCATTTATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 9 0.32
31 19 0.68
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.54
Consensus pattern (29 bp):
CATTTTAATATCATTATTACTATTATTTA
Found at i:7460616 original size:28 final size:27
Alignment explanation
Indices: 7460579--7460642 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
7460569 TGTTATGTAT
* *
7460579 ATATACATACATGCATACATTTTTTATA
1 ATATATATACATACATA-ATTTTTTATA
*
7460607 ATATATATACATACATAATTTTTTTTA
1 ATATATATACATACATAATTTTTTATA
*
7460634 ATTTATATA
1 ATATATATA
7460643 TATATATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 17 0.53
28 15 0.47
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (27 bp):
ATATATATACATACATAATTTTTTATA
Found at i:7460642 original size:2 final size:2
Alignment explanation
Indices: 7460637--7460759 Score: 79
Period size: 2 Copynumber: 61.5 Consensus size: 2
7460627 TTTTTTAATT
* ** * *
7460637 TA TA TA TA TA TA TA CA TA CC TA TA TA T- TA TT TA TA CTT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
** * * * * * *
7460679 TA TA TA TA CG CA TA TA CA TA CA TA CTT TT TA -A TA TA TA TC TA
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* *
7460721 TA TA TA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7460760 CTTTACATTT
Statistics
Matches: 91, Mismatches: 26, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
1 2 0.02
2 87 0.96
3 2 0.02
ACGTcount: A:0.43, C:0.10, G:0.01, T:0.46
Consensus pattern (2 bp):
TA
Found at i:7460686 original size:38 final size:37
Alignment explanation
Indices: 7460601--7460759 Score: 148
Period size: 38 Copynumber: 4.3 Consensus size: 37
7460591 GCATACATTT
* *
7460601 TTTATA-ATATATATACATACATA-ATTTTTTTTA-A
1 TTTATATATATATATACATACATATATATTATTTATA
*
7460635 TTTATATATATATATACATACCTATATATTATTTATA
1 TTTATATATATATATACATACATATATATTATTTATA
* * *
7460672 CTTTATATATATATACGCATATACATACATACTT-TTTAATA
1 -TTTATATATATATA--TACATACATATATA-TTATTT-ATA
* * *
7460713 TATATCTATATATATACATACATATATA-TATATATA
1 TTTATATATATATATACATACATATATATTATTTATA
*
7460749 TATATATATAT
1 TTTATATATAT
7460760 CTTTACATTT
Statistics
Matches: 102, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
34 6 0.06
35 16 0.16
36 22 0.22
37 3 0.03
38 25 0.25
40 25 0.25
41 5 0.05
ACGTcount: A:0.42, C:0.09, G:0.01, T:0.48
Consensus pattern (37 bp):
TTTATATATATATATACATACATATATATTATTTATA
Found at i:7461251 original size:72 final size:72
Alignment explanation
Indices: 7461131--7461272 Score: 221
Period size: 72 Copynumber: 2.0 Consensus size: 72
7461121 TCTTTTCAAA
*** * *
7461131 CTCAAGTTTTAAACGATCTTGGGAATTAAGAAGAGATCGTGTCATAACTTACTGGGCATGATCCC
1 CTCAAGTTTTAAACGATCTCAAGAATTAAGAAAAGATCGTGTCATAACTTACTCGGCATGATCCC
7461196 TTTTTCT
66 TTTTTCT
* *
7461203 CTCAAGTTTTAAACGATCTCAAGAATTAAGAAAAGATTGTGTCCTAACTTACTCGGCATGATCCC
1 CTCAAGTTTTAAACGATCTCAAGAATTAAGAAAAGATCGTGTCATAACTTACTCGGCATGATCCC
7461268 TTTTT
66 TTTTT
7461273 TAGATCCGAG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (72 bp):
CTCAAGTTTTAAACGATCTCAAGAATTAAGAAAAGATCGTGTCATAACTTACTCGGCATGATCCC
TTTTTCT
Found at i:7464877 original size:31 final size:31
Alignment explanation
Indices: 7464842--7464916 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
7464832 ATATTTGATT
* *
7464842 ATTTTAGTCAC-TCCAGTTAGATAAATTGTCA
1 ATTTTAGTCACTTCCA-TTAAATAAATTGTAA
* *
7464873 ATTTTAGTCACTTCTATTAAATAAGTTGTAA
1 ATTTTAGTCACTTCCATTAAATAAATTGTAA
*
7464904 ATTTTAGTTACTT
1 ATTTTAGTCACTT
7464917 TACCTTTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
31 35 0.92
32 3 0.08
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (31 bp):
ATTTTAGTCACTTCCATTAAATAAATTGTAA
Found at i:7471922 original size:2 final size:2
Alignment explanation
Indices: 7471915--7471952 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
7471905 TTAATAAATC
7471915 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7471953 GACAATAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7472595 original size:25 final size:23
Alignment explanation
Indices: 7472567--7472615 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
7472557 TAAAGCTTAG
* *
7472567 GTTTAGGATTCTTTTAAGGGTTTTT
1 GTTTAGG-TT-TTGTAAGAGTTTTT
7472592 GTTTAGGTTTTGTAAGAGTTTTT
1 GTTTAGGTTTTGTAAGAGTTTTT
7472615 G
1 G
7472616 AAGTTTAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 13 0.59
24 2 0.09
25 7 0.32
ACGTcount: A:0.16, C:0.02, G:0.27, T:0.55
Consensus pattern (23 bp):
GTTTAGGTTTTGTAAGAGTTTTT
Found at i:7472703 original size:20 final size:20
Alignment explanation
Indices: 7472675--7472716 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7472665 GGGAATTTTT
*
7472675 TATTTTTTAACATTTTTATA
1 TATTCTTTAACATTTTTATA
* *
7472695 TATTCTTTAAGATTTTTTTA
1 TATTCTTTAACATTTTTATA
7472715 TA
1 TA
7472717 ATATTTATAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (20 bp):
TATTCTTTAACATTTTTATA
Found at i:7472723 original size:20 final size:20
Alignment explanation
Indices: 7472680--7472723 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7472670 TTTTTTATTT
* *
7472680 TTTAACATTTTTATATATTC
1 TTTAACATTTTTATATAATA
* *
7472700 TTTAAGATTTTTTTATAATA
1 TTTAACATTTTTATATAATA
7472720 TTTA
1 TTTA
7472724 TAGTTGGTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTAACATTTTTATATAATA
Found at i:7472761 original size:18 final size:16
Alignment explanation
Indices: 7472738--7472780 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 16
7472728 TGGTGAAAAG
7472738 TATAAATTTTAGAGTTGT
1 TATAAATTTT-GAGTT-T
7472756 TATAAAAATTTTGAGTTT
1 TAT--AAATTTTGAGTTT
7472774 TATAAAT
1 TATAAAT
7472781 AACATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 4 0.17
18 7 0.30
19 5 0.22
20 7 0.30
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.49
Consensus pattern (16 bp):
TATAAATTTTGAGTTT
Found at i:7472982 original size:11 final size:11
Alignment explanation
Indices: 7472967--7473031 Score: 60
Period size: 11 Copynumber: 5.9 Consensus size: 11
7472957 GAGTGAACTA
7472967 AGAGAATTGAG
1 AGAGAATTGAG
* *
7472978 TGAGAATTAAG
1 AGAGAATTGAG
*
7472989 AGAGCATTGAG
1 AGAGAATTGAG
*
7473000 A-ATAAATTGAG
1 AGA-GAATTGAG
*
7473011 AGAGAGTTGAG
1 AGAGAATTGAG
*
7473022 AGTGAATTGA
1 AGAGAATTGA
7473032 AAAAGTGAAA
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
10 1 0.02
11 39 0.95
12 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.32, T:0.23
Consensus pattern (11 bp):
AGAGAATTGAG
Found at i:7473029 original size:22 final size:21
Alignment explanation
Indices: 7472954--7473031 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
7472944 GAACAAAACA
* *
7472954 TGAGAGTGAACTAAGAGA-AT
1 TGAGAGTGAATTGAGAGAGAT
* * *
7472974 TGAGTGAGAATTAAGAGAGCAT
1 TGAGAGTGAATTGAGAGAG-AT
* *
7472996 TGAGAATAAATTGAGAGAGAGT
1 TGAGAGTGAATTGAGAGAGA-T
7473018 TGAGAGTGAATTGA
1 TGAGAGTGAATTGA
7473032 AAAAGTGAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
20 15 0.33
21 1 0.02
22 29 0.64
ACGTcount: A:0.42, C:0.03, G:0.32, T:0.23
Consensus pattern (21 bp):
TGAGAGTGAATTGAGAGAGAT
Found at i:7480619 original size:19 final size:19
Alignment explanation
Indices: 7480595--7480634 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
7480585 TAATCAATGG
7480595 GTGTGAGGTACTATGTGAT
1 GTGTGAGGTACTATGTGAT
7480614 GTGTGAGGTACTATGTGAT
1 GTGTGAGGTACTATGTGAT
7480633 GT
1 GT
7480635 CCACGAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.05, G:0.38, T:0.38
Consensus pattern (19 bp):
GTGTGAGGTACTATGTGAT
Found at i:7487301 original size:12 final size:12
Alignment explanation
Indices: 7487270--7487303 Score: 61
Period size: 11 Copynumber: 2.9 Consensus size: 12
7487260 CAATACCCAA
7487270 GAAAGAATCCAG
1 GAAAGAATCCAG
7487282 GAAA-AATCCAG
1 GAAAGAATCCAG
7487293 GAAAGAATCCA
1 GAAAGAATCCA
7487304 CCTAGATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.53, C:0.18, G:0.21, T:0.09
Consensus pattern (12 bp):
GAAAGAATCCAG
Found at i:7489770 original size:25 final size:25
Alignment explanation
Indices: 7489742--7489804 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
7489732 TATTAACGGG
*
7489742 AAGCTCACGAGAGCCATATATC-AGA
1 AAGCTCAAGAGAGCCA-ATATCGAGA
*
7489767 AAGCTCAAGAAAGCCAATATCGAGA
1 AAGCTCAAGAGAGCCAATATCGAGA
* *
7489792 TA-CTCATGAGAGC
1 AAGCTCAAGAGAGC
7489805 TATTAACGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 14 0.44
25 18 0.56
ACGTcount: A:0.41, C:0.22, G:0.21, T:0.16
Consensus pattern (25 bp):
AAGCTCAAGAGAGCCAATATCGAGA
Found at i:7491617 original size:3 final size:3
Alignment explanation
Indices: 7491609--7491711 Score: 138
Period size: 3 Copynumber: 34.3 Consensus size: 3
7491599 TTCAGTAATT
* * * *
7491609 TTA TTA TTA TTA TTT TTA TTA TT- TGTA ATA TTA TTG TTA CTTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA TTA
7491655 -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7491702 TTA TTA TTA T
1 TTA TTA TTA T
7491712 AATATAATAG
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
2 2 0.02
3 83 0.94
4 3 0.03
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7491865 original size:2 final size:2
Alignment explanation
Indices: 7491858--7491912 Score: 53
Period size: 2 Copynumber: 29.0 Consensus size: 2
7491848 ATACTTATTC
* * * *
7491858 AT AT AT AT AT AT AT TT AT AT AT -T A- AA AT AT GT AT AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7491898 AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT
7491913 TTTATCTTAC
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
1 3 0.07
2 40 0.93
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (2 bp):
AT
Found at i:7492404 original size:109 final size:109
Alignment explanation
Indices: 7492208--7492511 Score: 461
Period size: 109 Copynumber: 2.8 Consensus size: 109
7492198 TCTAAATGAG
* * * * *
7492208 GCAATATTTAACATTTGGAAATTCGAGAAAACGTGCACTAACGTGCTGGGTTTCGATTTTTCTCG
1 GCAATATTTAGCGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCG
* * * *
7492273 TTCAACCAAATAACTAAGTATCCTTTTAAAAATTTCAAAATAAA
66 TTCAACCAAATAGCCAAATATCCTTTTAAAAATTTCAAAACAAA
* * *
7492317 GCAATGTTTTGCGTTTGGTAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCG
1 GCAATATTTAGCGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCG
*
7492382 TTCAACCAAATAGCCAAATATCCTTTTAAAAATTTCAAAACAAT
66 TTCAACCAAATAGCCAAATATCCTTTTAAAAATTTCAAAACAAA
7492426 GCAATATTTAGCGTTTGGAAATTCGAGG-AACGTGCCCTAATGTGCTGGGTTTCGA--TTTCTCG
1 GCAATATTTAGCGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCG
*
7492488 TTTAACCAAATAGCCAAATATCCT
66 TTCAACCAAATAGCCAAATATCCT
7492512 CTTGAATCTT
Statistics
Matches: 178, Mismatches: 17, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
106 30 0.17
108 27 0.15
109 121 0.68
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (109 bp):
GCAATATTTAGCGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCG
TTCAACCAAATAGCCAAATATCCTTTTAAAAATTTCAAAACAAA
Found at i:7494167 original size:192 final size:192
Alignment explanation
Indices: 7493840--7494225 Score: 772
Period size: 192 Copynumber: 2.0 Consensus size: 192
7493830 GCCGTATATA
7493840 TATCAGTTTTATGTAAAGAGATTTGTTTTCTAGTAAAGTTGTTCTAATAAGAATTGAACCAAGAA
1 TATCAGTTTTATGTAAAGAGATTTGTTTTCTAGTAAAGTTGTTCTAATAAGAATTGAACCAAGAA
7493905 TCAACGTCTCTTTTTGCATTCATTTCATGCATTTGCATTACATAACATCATATGCATTAAGGACC
66 TCAACGTCTCTTTTTGCATTCATTTCATGCATTTGCATTACATAACATCATATGCATTAAGGACC
7493970 ATTAAAGGACCTTAATTGAATAAAATTATTTCAGTTAACCTGGAAAACCAACACCCCTACGG
131 ATTAAAGGACCTTAATTGAATAAAATTATTTCAGTTAACCTGGAAAACCAACACCCCTACGG
7494032 TATCAGTTTTATGTAAAGAGATTTGTTTTCTAGTAAAGTTGTTCTAATAAGAATTGAACCAAGAA
1 TATCAGTTTTATGTAAAGAGATTTGTTTTCTAGTAAAGTTGTTCTAATAAGAATTGAACCAAGAA
7494097 TCAACGTCTCTTTTTGCATTCATTTCATGCATTTGCATTACATAACATCATATGCATTAAGGACC
66 TCAACGTCTCTTTTTGCATTCATTTCATGCATTTGCATTACATAACATCATATGCATTAAGGACC
7494162 ATTAAAGGACCTTAATTGAATAAAATTATTTCAGTTAACCTGGAAAACCAACACCCCTACGG
131 ATTAAAGGACCTTAATTGAATAAAATTATTTCAGTTAACCTGGAAAACCAACACCCCTACGG
7494224 TA
1 TA
7494226 CTCGGACGAA
Statistics
Matches: 194, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
192 194 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.34
Consensus pattern (192 bp):
TATCAGTTTTATGTAAAGAGATTTGTTTTCTAGTAAAGTTGTTCTAATAAGAATTGAACCAAGAA
TCAACGTCTCTTTTTGCATTCATTTCATGCATTTGCATTACATAACATCATATGCATTAAGGACC
ATTAAAGGACCTTAATTGAATAAAATTATTTCAGTTAACCTGGAAAACCAACACCCCTACGG
Found at i:7496403 original size:42 final size:42
Alignment explanation
Indices: 7496344--7496423 Score: 160
Period size: 42 Copynumber: 1.9 Consensus size: 42
7496334 GGATGGTACA
7496344 ACAAGATGAAAAACAGATCCTACCCTATAAAGAATCAATAGG
1 ACAAGATGAAAAACAGATCCTACCCTATAAAGAATCAATAGG
7496386 ACAAGATGAAAAACAGATCCTACCCTATAAAGAATCAA
1 ACAAGATGAAAAACAGATCCTACCCTATAAAGAATCAA
7496424 CAGAATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.51, C:0.20, G:0.12, T:0.16
Consensus pattern (42 bp):
ACAAGATGAAAAACAGATCCTACCCTATAAAGAATCAATAGG
Found at i:7497083 original size:17 final size:17
Alignment explanation
Indices: 7497063--7497111 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
7497053 TATTTCAAAA
7497063 AAAAAAGAAGAAGAAAG
1 AAAAAAGAAGAAGAAAG
7497080 AAAAAAGAAGGAA-AAAG
1 AAAAAAGAA-GAAGAAAG
*
7497097 AAAAAAAAAG-AGAAA
1 AAAAAAGAAGAAGAAA
7497112 ATGAGAGGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 1 0.03
16 4 0.14
17 21 0.72
18 3 0.10
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAGAAGAAAG
Found at i:7497085 original size:21 final size:20
Alignment explanation
Indices: 7497059--7497105 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
7497049 AAAATATTTC
*
7497059 AAAAAAAAAAGAAGAAGAAA
1 AAAAAAAAAAGAAAAAGAAA
* *
7497079 GAAAAAAGAAGGAAAAAGAAA
1 -AAAAAAAAAAGAAAAAGAAA
7497100 AAAAAA
1 AAAAAA
7497106 GAGAAAATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAGAAAAAGAAA
Found at i:7497112 original size:17 final size:17
Alignment explanation
Indices: 7497059--7497112 Score: 56
Period size: 20 Copynumber: 2.9 Consensus size: 17
7497049 AAAATATTTC
7497059 AAAAAAAAA-AGAAGAAG
1 AAAAAAAAAGAGAA-AAG
7497076 AAAGAAAAAAGAAGGAAAAAG
1 AAA-AAAAAAG-A-G-AAAAG
7497097 AAAAAAAAAGAGAAAA
1 AAAAAAAAAGAGAAAA
7497113 TGAGAGGCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
17 7 0.22
18 7 0.22
19 1 0.03
20 8 0.25
21 7 0.22
22 2 0.06
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAGAAAAG
Found at i:7497756 original size:44 final size:44
Alignment explanation
Indices: 7497702--7498099 Score: 415
Period size: 44 Copynumber: 9.0 Consensus size: 44
7497692 AGATAGTAGA
* *
7497702 TCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAG
1 TCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCAG
* * * * *
7497746 TCTTGCCTTCCTATACTGACAGCGGAGTAGA-CTAAAGATAGCAG
1 TCTTGCCTTCCTGTACTGACAGCGAAGCAGATC-AAAGAAACCAG
*
7497790 ATCATGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCAG
1 -TCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCAG
* *
7497835 TCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAG
1 TCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCAG
* * * **
7497879 TCTTGCCTTCCTGTACTGACAGCGGAGTAGA-CTAAAGATAGTAG
1 TCTTGCCTTCCTGTACTGACAGCGAAGCAGATC-AAAGAAACCAG
* * * *
7497923 ATCATGCCTTCTTGTACTGGCAGCGAAGCAGATCAAAGACACCAG
1 -TCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCAG
* * * * **
7497968 CCTTGCCTTCCTGTACTGACAGCGGAGCAGA-CTGAAGATAGTAG
1 TCTTGCCTTCCTGTACTGACAGCGAAGCAGATC-AAAGAAACCAG
* * * * *
7498012 ATCTTGCCTTCCTGTACTGGCAGAGAAGCAGATCGAGGACACCAG
1 -TCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCAG
* * * *
7498057 CCTTGCCTTCCTGTACTGGCAGTGAAGCAGATCAAAGACACCA
1 TCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCA
7498100 TAGTTTACAG
Statistics
Matches: 293, Mismatches: 52, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
43 3 0.01
44 183 0.62
45 104 0.35
46 3 0.01
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.22
Consensus pattern (44 bp):
TCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCAG
Found at i:7497842 original size:89 final size:88
Alignment explanation
Indices: 7497702--7498099 Score: 415
Period size: 89 Copynumber: 4.5 Consensus size: 88
7497692 AGATAGTAGA
* * *
7497702 TCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGTCTTGCCTTCCTATACTGACA
1 TCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCAGTCTTGCCTTCCTGTACTGACA
* * *
7497767 GCGGAGTAGA-CTAAAGATAGCAG
66 GCGAAGCAGATC-AAAGATACCAG
*
7497790 ATCATGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCAGTCTTGCCTTCCTGTACTGAC
1 -TCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCAGTCTTGCCTTCCTGTACTGAC
* * *
7497855 GGCGAAGCAGATCGAAGAAACCAG
65 AGCGAAGCAGATCAAAGATACCAG
* * * ** * * *
7497879 TCTTGCCTTCCTGTACTGACAGCGGAGTAGA-CTAAAGATAGTAGATCATGCCTTCTTGTACTGG
1 TCTTGCCTTCCTGTACTGACAGCGAAGCAGATC-AAAGAAACCAG-TCTTGCCTTCCTGTACTGA
*
7497943 CAGCGAAGCAGATCAAAGACACCAG
64 CAGCGAAGCAGATCAAAGATACCAG
* * * * ** *
7497968 CCTTGCCTTCCTGTACTGACAGCGGAGCAGA-CTGAAGATAGTAGATCTTGCCTTCCTGTACTGG
1 TCTTGCCTTCCTGTACTGACAGCGAAGCAGATC-AAAGAAACCAG-TCTTGCCTTCCTGTACTGA
* * * *
7498032 CAGAGAAGCAGATCGAGGACACCAG
64 CAGCGAAGCAGATCAAAGATACCAG
* * * *
7498057 CCTTGCCTTCCTGTACTGGCAGTGAAGCAGATCAAAGACACCA
1 TCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCA
7498100 TAGTTTACAG
Statistics
Matches: 268, Mismatches: 37, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
87 1 0.00
88 36 0.13
89 229 0.85
90 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.22
Consensus pattern (88 bp):
TCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACCAGTCTTGCCTTCCTGTACTGACA
GCGAAGCAGATCAAAGATACCAG
Found at i:7497940 original size:133 final size:133
Alignment explanation
Indices: 7497702--7498030 Score: 534
Period size: 133 Copynumber: 2.5 Consensus size: 133
7497692 AGATAGTAGA
*
7497702 TCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGTCTTGCCTTCCTATACTGACA
1 TCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGTCTTGCCTTCCTGTACTGACA
7497767 GCGGAGTAGACTAAAGATAGCAGATCATGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAAC
66 GCGGAGTAGACTAAAGATAGCAGATCATGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAAC
7497832 CAG
131 CAG
7497835 TCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGTCTTGCCTTCCTGTACTGACA
1 TCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGTCTTGCCTTCCTGTACTGACA
* * * *
7497900 GCGGAGTAGACTAAAGATAGTAGATCATGCCTTCTTGTACTGGCAGCGAAGCAGATCAAAGACAC
66 GCGGAGTAGACTAAAGATAGCAGATCATGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAAC
7497965 CAG
131 CAG
* * * * **
7497968 CCTTGCCTTCCTGTACTGACAGCGGAGCAGA-CTGAAGATAGTAGATCTTGCCTTCCTGTACTG
1 TCTTGCCTTCCTGTACTGACGGCGAAGCAGATC-GAAGAAACCAG-TCTTGCCTTCCTGTACTG
7498031 GCAGAGAAGC
Statistics
Matches: 183, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
132 1 0.01
133 164 0.90
134 18 0.10
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (133 bp):
TCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGTCTTGCCTTCCTGTACTGACA
GCGGAGTAGACTAAAGATAGCAGATCATGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAAC
CAG
Found at i:7498064 original size:133 final size:133
Alignment explanation
Indices: 7497703--7498099 Score: 485
Period size: 133 Copynumber: 3.0 Consensus size: 133
7497693 GATAGTAGAT
* *
7497703 CTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGTCTTGCCTTCCTATACTGACAG
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGAAACCAGTCTTGCCTTCCTGTACTGACAG
* * * * * * * *
7497768 CGGAGTAGACTAAAGATAGCAGATCATGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGAAACC
66 AGAAGCAGACTAAAGACACCAGACCATGCCTTCCTGTACTGGCAGCGAAGCAGATCAAAGACACC
*
7497833 AGT
131 AGC
*
7497836 CTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGTCTTGCCTTCCTGTACTGACAG
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGAAACCAGTCTTGCCTTCCTGTACTGACAG
* * * * ** * *
7497901 CGGAGTAGACTAAAGATAGTAGATCATGCCTTCTTGTACTGGCAGCGAAGCAGATCAAAGACACC
66 AGAAGCAGACTAAAGACACCAGACCATGCCTTCCTGTACTGGCAGCGAAGCAGATCAAAGACACC
7497966 AGC
131 AGC
* * ** *
7497969 CTTGCCTTCCTGTACTGACAGCGGAGCAGA-CTGAAGATAGTAGATCTTGCCTTCCTGTACTGGC
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATC-GAAGAAACCAG-TCTTGCCTTCCTGTACTGAC
* * * *
7498033 AGAGAAGCAGA-TCGAGGACACCAG-CCTTGCCTTCCTGTACTGGCAGTGAAGCAGATCAAAGAC
64 AGAGAAGCAGACT-AAAGACACCAGACCATGCCTTCCTGTACTGGCAGCGAAGCAGATCAAAGAC
7498096 ACCA
128 ACCA
7498100 TAGTTTACAG
Statistics
Matches: 237, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
132 1 0.00
133 203 0.86
134 33 0.14
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (133 bp):
CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGAAACCAGTCTTGCCTTCCTGTACTGACAG
AGAAGCAGACTAAAGACACCAGACCATGCCTTCCTGTACTGGCAGCGAAGCAGATCAAAGACACC
AGC
Found at i:7498291 original size:24 final size:24
Alignment explanation
Indices: 7498264--7498312 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
7498254 GGCAAATCTT
*
7498264 ATCTCCCTGAAGTTGCAGTGGAGC
1 ATCTCCCTGAAGTTGCAGTAGAGC
7498288 ATCTCCCTGAAGTTGCAGTAGAGC
1 ATCTCCCTGAAGTTGCAGTAGAGC
7498312 A
1 A
7498313 GCTTAAAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (24 bp):
ATCTCCCTGAAGTTGCAGTAGAGC
Found at i:7499711 original size:9 final size:9
Alignment explanation
Indices: 7499699--7499739 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
7499689 TTCAGTAATT
7499699 TTATTATTT-
1 TTATT-TTTA
7499708 TTATTTTTA
1 TTATTTTTA
7499717 TTATTTTTA
1 TTATTTTTA
*
7499726 TTATTTATA
1 TTATTTTTA
7499735 TTATT
1 TTATT
7499740 GTTACTTATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 3 0.10
9 27 0.90
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTATTTTTA
Found at i:7499720 original size:18 final size:18
Alignment explanation
Indices: 7499696--7499762 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
7499686 TTTTTCAGTA
7499696 ATTT-TATTATTTTTA-T
1 ATTTATATTATTTTTATT
7499712 -TTT-TATTATTTTTATT
1 ATTTATATTATTTTTATT
*
7499728 ATTTATATTATTGTTACTT
1 ATTTATATTATTTTTA-TT
* *
7499747 A-TCATATTATTATTAT
1 ATTTATATTATTTTTAT
7499763 ATAATAGCTT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
15 14 0.32
16 1 0.02
17 4 0.09
18 22 0.50
19 3 0.07
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (18 bp):
ATTTATATTATTTTTATT
Found at i:7499736 original size:15 final size:15
Alignment explanation
Indices: 7499697--7499733 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
7499687 TTTTCAGTAA
7499697 TTTTATTATTTTTAT
1 TTTTATTATTTTTAT
7499712 TTTTATTATTTTTAT
1 TTTTATTATTTTTAT
7499727 TATTTAT
1 T-TTTAT
7499734 ATTATTGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATTATTTTTAT
Found at i:7499913 original size:2 final size:2
Alignment explanation
Indices: 7499906--7499970 Score: 64
Period size: 2 Copynumber: 34.0 Consensus size: 2
7499896 ATACGTATTC
* * * * *
7499906 AT AT AT AT AT TT TT AT AT AT -T A- AA AT AT GT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7499946 AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7499971 TTTATCTTAC
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
1 3 0.06
2 50 0.94
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (2 bp):
AT
Found at i:7500470 original size:109 final size:109
Alignment explanation
Indices: 7500272--7500577 Score: 433
Period size: 109 Copynumber: 2.8 Consensus size: 109
7500262 TTTCTAAATG
* * * * *
7500272 AGGCAATATTTAGCATTTGGAACTAC-GGGAAAACGTGCCTTAATGTGCTGGGTTTCGATTTTTC
1 AGGCAATATTTAGCGTTTGGAAATTCAAGG-AAACGTGCCCTAATGTGCTGGGTTTCGATTTTTC
* * *
7500336 TCGTTCAACCAAATAACTAAGTATCCTTTTAAAAATTTCAAAATA
65 TCGTTCAACCAAATAACCAAATATCCTTTTAAAAATTTCAAAACA
* * * * *
7500381 AGGCAATGTTTTGTGTTTGGTAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCT
1 AGGCAATATTTAGCGTTTGGAAATTCAAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCT
7500446 CGTTCAACCAAATAACCAAATATCCTTTTAAAAATTTCAAAACA
66 CGTTCAACCAAATAACCAAATATCCTTTTAAAAATTTCAAAACA
7500490 AGGCAATATTTAGCGTTTGGAAATTCAAGG-AACGTGCCCTAATGTGCTGGGTTTCGA--TTTCT
1 AGGCAATATTTAGCGTTTGGAAATTCAAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCT
*
7500552 CGTTTAACCAAA-AAGCCAAATATCCT
66 CGTTCAACCAAATAA-CCAAATATCCT
7500578 CTTGAATCTT
Statistics
Matches: 177, Mismatches: 18, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
105 2 0.01
106 27 0.15
108 27 0.15
109 119 0.67
110 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (109 bp):
AGGCAATATTTAGCGTTTGGAAATTCAAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCT
CGTTCAACCAAATAACCAAATATCCTTTTAAAAATTTCAAAACA
Found at i:7502223 original size:19 final size:17
Alignment explanation
Indices: 7502199--7502250 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
7502189 TTTTATGAAC
*
7502199 TTTTATATTTTTATTGATT
1 TTTTATATTTTTAAT-A-T
*
7502218 TTTTATTTTTTTAATAT
1 TTTTATATTTTTAATAT
7502235 TTTTATAATTTTTAAT
1 TTTTAT-ATTTTTAAT
7502251 TTATTTATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 7 0.24
18 9 0.31
19 13 0.45
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (17 bp):
TTTTATATTTTTAATAT
Found at i:7502249 original size:18 final size:19
Alignment explanation
Indices: 7502199--7502250 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
7502189 TTTTATGAAC
*
7502199 TTTTAT-ATTTTTATTGAT
1 TTTTATAATTTTTAATGAT
*
7502217 TTTT-TATTTTTTTAAT-AT
1 TTTTATA-ATTTTTAATGAT
7502235 TTTTATAATTTTTAAT
1 TTTTATAATTTTTAAT
7502251 TTATTTATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 1 0.04
18 18 0.64
19 9 0.32
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTATAATTTTTAATGAT
Found at i:7507177 original size:50 final size:49
Alignment explanation
Indices: 7507123--7507505 Score: 349
Period size: 50 Copynumber: 7.9 Consensus size: 49
7507113 TAAGATCTAT
* * * *
7507123 TGTTGTAGCTTCAATCTTTATAATTGCAATGTTAGGGAAGTAAGATCCGC
1 TGTTGTAGCTTCAATCTTT-TAACTGCAACGCTAGGAAAGTAAGATCCGC
** *
7507173 TGTTGTAGCTTCAATCTGTTCCACTGCAACACTAGGAAAGTAAGATCCGC
1 TGTTGTAGCTTCAATCT-TTTAACTGCAACGCTAGGAAAGTAAGATCCGC
* * *
7507223 TGTTGTAGCTTCAATCTTTTTAACTG--TCG--GGGAAA-CAAGATCCGC
1 TGTTGTAGCTTCAATC-TTTTAACTGCAACGCTAGGAAAGTAAGATCCGC
* * * *
7507268 TGTTGTAGCTTCAGTCTTTTTAACTGC--CG--GGGAAA-CAAGATCCAC
1 TGTTGTAGCTTCAATC-TTTTAACTGCAACGCTAGGAAAGTAAGATCCGC
** *
7507313 TGTTGTAGCTTCAATCTGTTCCACTGCAACACTAGGAAAGTAAGATCCGC
1 TGTTGTAGCTTCAATCT-TTTAACTGCAACGCTAGGAAAGTAAGATCCGC
* * *
7507363 TGTTATAGCTTCAATCTTTTTAATTGCAATG-TCAGGAAAGTAAGATCCGC
1 TGTTGTAGCTTCAATC-TTTTAACTGCAACGCT-AGGAAAGTAAGATCCGC
* ** *
7507413 TGTTGTAGCTTCAACCTGTTCCACTGCAACGCTAGGAAAGTAAGATTCGC
1 TGTTGTAGCTTCAATCT-TTTAACTGCAACGCTAGGAAAGTAAGATCCGC
** * *
7507463 TGTTGTAGCTTCAATCTGTTCCACTGCAAC-CGAGGAAGGTAAG
1 TGTTGTAGCTTCAATCT-TTTAACTGCAACGCTAGGAAAGTAAG
7507506 GTTTGTGTCT
Statistics
Matches: 282, Mismatches: 38, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
44 1 0.00
45 73 0.26
46 5 0.02
47 1 0.00
48 1 0.00
49 18 0.06
50 178 0.63
51 5 0.02
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (49 bp):
TGTTGTAGCTTCAATCTTTTAACTGCAACGCTAGGAAAGTAAGATCCGC
Found at i:7507323 original size:140 final size:145
Alignment explanation
Indices: 7507164--7507505 Score: 455
Period size: 140 Copynumber: 2.4 Consensus size: 145
7507154 TTAGGGAAGT
*
7507164 AAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACACTAGGAAAGTAAGATCCGCTGTTGT
1 AAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACACTAGGAAAGTAAGATCCGCTGTTAT
* ** * *
7507229 AGCTTCAATCTTTTTAA-C-TGTCGGGGAAA-CAAGATCCGCTGTTGTAGCTTCAGTCTTTTTAA
66 AGCTTCAATCTTTTTAATCATGTC-AGGAAAGCAAGATCCGCTGTTGTAGCTTCAACCTGTTCAA
*
7507291 CTGC-CG-GGGAAA-C
130 CTGCACGCAGGAAAGC
*
7507304 AAGATCCACTGTTGTAGCTTCAATCTGTTCCACTGCAACACTAGGAAAGTAAGATCCGCTGTTAT
1 AAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACACTAGGAAAGTAAGATCCGCTGTTAT
*
7507369 AGCTTCAATCTTTTTAATTGCAATGTCAGGAAAGTAAGATCCGCTGTTGTAGCTTCAACCTGTTC
66 AGCTTCAATCTTTTTAA-T-C-ATGTCAGGAAAGCAAGATCCGCTGTTGTAGCTTCAACCTGTTC
* *
7507434 CACTGCAACGCTAGGAAAGT
128 AACTGC-ACGC-AGGAAAGC
* * *
7507454 AAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCAAC-CGAGGAAGGTAAG
1 AAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACACTAGGAAAGTAAG
7507506 GTTTGTGTCT
Statistics
Matches: 176, Mismatches: 15, Indels: 13
0.86 0.07 0.06
Matches are distributed among these distances:
140 80 0.45
143 1 0.01
144 5 0.03
145 35 0.20
147 2 0.01
149 16 0.09
150 37 0.21
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (145 bp):
AAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACACTAGGAAAGTAAGATCCGCTGTTAT
AGCTTCAATCTTTTTAATCATGTCAGGAAAGCAAGATCCGCTGTTGTAGCTTCAACCTGTTCAAC
TGCACGCAGGAAAGC
Found at i:7507600 original size:88 final size:88
Alignment explanation
Indices: 7507489--7508433 Score: 1412
Period size: 88 Copynumber: 10.7 Consensus size: 88
7507479 TGTTCCACTG
* ** * **
7507489 CAACCGAG-GAAGGTAAGGTTTGTGTCTTTAATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATC
1 CAACCGAGAG-AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATC
* * ** *
7507553 TGTTATCTTTGACCTGCTCCAAT-A
65 TTTTGTCTTCAACCAGCTCC-ATCA
* * * * *
7507577 CAACCGAGGGAGGCAAGGTTTGTGTCTTCGATCTACTTTGCTGTCAATGCAGGAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
** * **
7507642 GCTATCTTTGACCTA-CTCCA-CTA
66 TTTGTCTTCAACC-AGCTCCATC-A
* * * * * * *
7507665 AAACCGAGAGAGGTAAGGCTTGTGTCTTCAATCTGTTTCGCTGTTAATACAGGAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
* *
7507730 GTTATCTTCAACCAGCTCCATCA
66 TTTGTCTTCAACCAGCTCCATCA
*
7507753 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATACAGGAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
7507818 TTTGTCTTCAACCAGCTCCATCA
66 TTTGTCTTCAACCAGCTCCATCA
7507841 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
7507906 TTTGTCTTCAACCAGCTCCATCA
66 TTTGTCTTCAACCAGCTCCATCA
*
7507929 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
*
7507994 TTTGTCTTCAACCAGTTCCATCA
66 TTTGTCTTCAACCAGCTCCATCA
* * * *
7508017 CAATCGAGAGAGGCAAGTTTTGTGTCTTTGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
7508082 TTTGTCTTCAACCAGCTCCATCA
66 TTTGTCTTCAACCAGCTCCATCA
* *
7508105 CAACCGAGAGAGACAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAAATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
*
7508170 TTTTTCTTCAACCAGCTCCATCA
66 TTTGTCTTCAACCAGCTCCATCA
* *
7508193 CAACCGAGAGAGGCAAGGTTTGTGGCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
7508258 TTTGTCTTCAACCAGCTCCATCA
66 TTTGTCTTCAACCAGCTCCATCA
* * *
7508281 CAATCGAGAGAGGAAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
7508346 TTTGTCTTCAACCAGCTCCATCA
66 TTTGTCTTCAACCAGCTCCATCA
*
7508369 CAATCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
7508434 GCAACTTCAT
Statistics
Matches: 796, Mismatches: 55, Indels: 12
0.92 0.06 0.01
Matches are distributed among these distances:
87 2 0.00
88 792 0.99
89 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.27
Consensus pattern (88 bp):
CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
TTTGTCTTCAACCAGCTCCATCA
Found at i:7509561 original size:21 final size:21
Alignment explanation
Indices: 7509535--7509578 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
7509525 GGTATAGCAA
7509535 GATCACCACATGCCCCAATCT
1 GATCACCACATGCCCCAATCT
** *
7509556 GATCACTTCATGCCCCATTCT
1 GATCACCACATGCCCCAATCT
7509577 GA
1 GA
7509579 CCAATATTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.25, C:0.39, G:0.11, T:0.25
Consensus pattern (21 bp):
GATCACCACATGCCCCAATCT
Found at i:7509691 original size:23 final size:23
Alignment explanation
Indices: 7509665--7509717 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
7509655 TTAGCCTCTC
**
7509665 CATTTTT-ACTTTTTCATTTTTTT
1 CATTTTTCACTTTTTC-TTTCATT
*
7509688 CATTTTTCATTTTTTCTTTCATT
1 CATTTTTCACTTTTTCTTTCATT
7509711 CATTTTT
1 CATTTTT
7509718 TTATATATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 19 0.73
24 7 0.27
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (23 bp):
CATTTTTCACTTTTTCTTTCATT
Found at i:7509693 original size:16 final size:15
Alignment explanation
Indices: 7509667--7509719 Score: 63
Period size: 15 Copynumber: 3.4 Consensus size: 15
7509657 AGCCTCTCCA
*
7509667 TTTTTACTTTTTCAT
1 TTTTTTCTTTTTCAT
7509682 TTTTTTCATTTTTCA-
1 TTTTTTC-TTTTTCAT
7509697 TTTTTTCTTTCATTCAT
1 TTTTTTCTTT--TTCAT
7509714 TTTTTT
1 TTTTTT
7509720 ATATATATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
14 3 0.09
15 13 0.39
16 11 0.33
17 6 0.18
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTTCTTTTTCAT
Found at i:7510567 original size:9 final size:9
Alignment explanation
Indices: 7510553--7510603 Score: 68
Period size: 9 Copynumber: 5.6 Consensus size: 9
7510543 TTTACTTTGA
7510553 TTTTTTTAT
1 TTTTTTTAT
7510562 TTTTTTTAT
1 TTTTTTTAT
7510571 TTTTTTTGAT
1 TTTTTTT-AT
*
7510581 TTTTTTTGT
1 TTTTTTTAT
7510590 TTTTTGTT-T
1 TTTTT-TTAT
7510599 TTTTT
1 TTTTT
7510604 GAGTCTGAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
9 28 0.72
10 11 0.28
ACGTcount: A:0.06, C:0.00, G:0.06, T:0.88
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:7510568 original size:10 final size:10
Alignment explanation
Indices: 7510553--7510587 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
7510543 TTTACTTTGA
7510553 TTTTTTTA-T
1 TTTTTTTATT
7510562 TTTTTTTATT
1 TTTTTTTATT
*
7510572 TTTTTTGATT
1 TTTTTTTATT
7510582 TTTTTT
1 TTTTTT
7510588 GTTTTTTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.89
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:7510578 original size:27 final size:26
Alignment explanation
Indices: 7510554--7510604 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
7510544 TTACTTTGAT
7510554 TTTTTTATTTTTTTT-ATTTTTTTTG
1 TTTTTTATTTTTTTTGATTTTTTTTG
7510579 ATTTTTT-TTGTTTTTTG-TTTTTTTTG
1 -TTTTTTATT-TTTTTTGATTTTTTTTG
7510605 AGTCTGAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.06, C:0.00, G:0.08, T:0.86
Consensus pattern (26 bp):
TTTTTTATTTTTTTTGATTTTTTTTG
Found at i:7510588 original size:10 final size:10
Alignment explanation
Indices: 7510548--7510605 Score: 67
Period size: 9 Copynumber: 6.5 Consensus size: 10
7510538 AAAATTTTAC
7510548 TTTGA-TTTT
1 TTTGATTTTT
7510557 TTT-ATTTTT
1 TTTGATTTTT
7510566 TTT-ATTTTT
1 TTTGATTTTT
7510575 TTTGATTTTT
1 TTTGATTTTT
7510585 TTTG---TTT
1 TTTGATTTTT
7510592 TTTG-TTTTT
1 TTTGATTTTT
7510601 TTTGA
1 TTTGA
7510606 GTCTGAACTC
Statistics
Matches: 44, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
7 7 0.16
8 1 0.02
9 26 0.59
10 10 0.23
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.83
Consensus pattern (10 bp):
TTTGATTTTT
Found at i:7514942 original size:2 final size:2
Alignment explanation
Indices: 7514924--7514967 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
7514914 AGATTATAAA
* * *
7514924 AT AT AG AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7514966 AT
1 AT
7514968 GTTTTAAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7515110 original size:22 final size:21
Alignment explanation
Indices: 7515073--7515113 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
7515063 AATATCAATA
7515073 ATAATATAATAATAATATTGT
1 ATAATATAATAATAATATTGT
*
7515094 ATAATGATATTAATAATATT
1 ATAAT-ATAATAATAATATT
7515114 AAAACAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (21 bp):
ATAATATAATAATAATATTGT
Found at i:7516835 original size:15 final size:15
Alignment explanation
Indices: 7516815--7516847 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
7516805 CTGCTGGAAA
7516815 TATACAATAGGTATG
1 TATACAATAGGTATG
7516830 TATACAATAGGTATG
1 TATACAATAGGTATG
7516845 TAT
1 TAT
7516848 CAAGACTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.36
Consensus pattern (15 bp):
TATACAATAGGTATG
Found at i:7523317 original size:21 final size:23
Alignment explanation
Indices: 7523267--7523317 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
7523257 GATTAAATTT
*
7523267 AAATTTAAAATAAATGAAAAGCG
1 AAATTAAAAATAAATGAAAAGCG
*
7523290 AAA-TAAAAATAAGT-AAAA-CG
1 AAATTAAAAATAAATGAAAAGCG
7523310 AAATTAAA
1 AAATTAAA
7523318 TTTAAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 5 0.20
21 8 0.32
22 9 0.36
23 3 0.12
ACGTcount: A:0.67, C:0.04, G:0.10, T:0.20
Consensus pattern (23 bp):
AAATTAAAAATAAATGAAAAGCG
Found at i:7523440 original size:24 final size:24
Alignment explanation
Indices: 7523413--7523462 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
7523403 TCCTCCAATC
* * * *
7523413 GATAAGTCGATTATAGAGGTCGAA
1 GATAAGTCAAATATAAAGGTAGAA
7523437 GATAAGTCAAATATAAAGGTAGAA
1 GATAAGTCAAATATAAAGGTAGAA
7523461 GA
1 GA
7523463 ACAACCTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.46, C:0.06, G:0.26, T:0.22
Consensus pattern (24 bp):
GATAAGTCAAATATAAAGGTAGAA
Found at i:7534080 original size:40 final size:40
Alignment explanation
Indices: 7534020--7534105 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 40
7534010 ACTAATTAGC
*
7534020 ACAAATAAACCTAACTAAATCTATGTTAATTTGATTCAAT
1 ACAAATAAACCTAACTAAATCTATGTTAATTCGATTCAAT
* *
7534060 ACAAGTAAACCTAACTAAATCTCTGTTAATTCGATTCAAT
1 ACAAATAAACCTAACTAAATCTATGTTAATTCGATTCAAT
7534100 ACAAAT
1 ACAAAT
7534106 GAAAATCCAC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (40 bp):
ACAAATAAACCTAACTAAATCTATGTTAATTCGATTCAAT
Found at i:7536144 original size:19 final size:18
Alignment explanation
Indices: 7536071--7536172 Score: 63
Period size: 18 Copynumber: 5.8 Consensus size: 18
7536061 AAAATGTACA
7536071 ATAAAATATATATAAA--T
1 ATAAAA-ATATATAAATTT
* * *
7536088 A-AAAATTTTATAATTTT
1 ATAAAAATATATAAATTT
*
7536105 ATAAAAATATATAAATAT
1 ATAAAAATATATAAATTT
7536123 ATAAGAAACTAT-TAAATTT
1 ATAA-AAA-TATATAAATTT
* **
7536142 AT--AAATTTATAAAAAT
1 ATAAAAATATATAAATTT
*
7536158 GTAAAAATATATAAA
1 ATAAAAATATATAAA
7536173 AGAACTAAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 15
0.70 0.14 0.16
Matches are distributed among these distances:
15 8 0.12
16 13 0.20
17 3 0.05
18 26 0.41
19 11 0.17
20 3 0.05
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (18 bp):
ATAAAAATATATAAATTT
Found at i:7537198 original size:13 final size:13
Alignment explanation
Indices: 7537180--7537206 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7537170 TTCAGTGCCT
7537180 TGGAAAATTTTTA
1 TGGAAAATTTTTA
7537193 TGGAAAATTTTTA
1 TGGAAAATTTTTA
7537206 T
1 T
7537207 CGAGAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TGGAAAATTTTTA
Found at i:7550990 original size:22 final size:22
Alignment explanation
Indices: 7550962--7551013 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
7550952 CATCTACAGT
7550962 GGTATTGCGATACCTGACCATG
1 GGTATTGCGATACCTGACCATG
7550984 GGTATTGCGATACCTGACCATG
1 GGTATTGCGATACCTGACCATG
7551006 GGTATTGC
1 GGTATTGC
7551014 AATATTGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (22 bp):
GGTATTGCGATACCTGACCATG
Found at i:7552360 original size:5 final size:5
Alignment explanation
Indices: 7552350--7552375 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7552340 CTCGAAAATT
7552350 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
7552376 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:7552889 original size:20 final size:20
Alignment explanation
Indices: 7552866--7552905 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7552856 TTTGAAAAAC
7552866 TTTAGAAAATGGTATCAATA
1 TTTAGAAAATGGTATCAATA
**
7552886 TTTAGTGAATGGTATCAATA
1 TTTAGAAAATGGTATCAATA
7552906 ACATTCTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.05, G:0.17, T:0.38
Consensus pattern (20 bp):
TTTAGAAAATGGTATCAATA
Found at i:7558937 original size:26 final size:26
Alignment explanation
Indices: 7558908--7558966 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
7558898 TACTAACAGC
* * *
7558908 AAAATTTTGATGATTTTACCCTTGGT
1 AAAATTTTGACGATATTACCCCTGGT
*
7558934 AAAATTTTGACGATATTGCCCCTGGT
1 AAAATTTTGACGATATTACCCCTGGT
7558960 AAAATTT
1 AAAATTT
7558967 CGAGAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.41
Consensus pattern (26 bp):
AAAATTTTGACGATATTACCCCTGGT
Found at i:7568160 original size:12 final size:13
Alignment explanation
Indices: 7568145--7568173 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7568135 AGGTTTTAGA
7568145 TTTTA-TTTTTGT
1 TTTTATTTTTTGT
7568157 TTTTATTTTTTGT
1 TTTTATTTTTTGT
7568170 TTTT
1 TTTT
7568174 GTAGAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.86
Consensus pattern (13 bp):
TTTTATTTTTTGT
Found at i:7569690 original size:49 final size:49
Alignment explanation
Indices: 7569622--7569721 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
7569612 TCTTATAGAG
*
7569622 AACATATGGAAAGCATTAAACATGTTATATTCTTTCCAAAAAGAATTAT
1 AACATATGGAAAGCATTAAAAATGTTATATTCTTTCCAAAAAGAATTAT
*
7569671 AACATATGGAAAGTATTAAAAATGTTATATTCTTTCCAAAAAGAATTAT
1 AACATATGGAAAGCATTAAAAATGTTATATTCTTTCCAAAAAGAATTAT
7569720 AA
1 AA
7569722 TTATCATGGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (49 bp):
AACATATGGAAAGCATTAAAAATGTTATATTCTTTCCAAAAAGAATTAT
Found at i:7577377 original size:44 final size:45
Alignment explanation
Indices: 7577315--7577401 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 45
7577305 TAGCAAACAT
* *
7577315 GTATATAGGTATAAATATATGTATATATAAA-TTATAAAAAATGA
1 GTATATAGGTATAAATATATATACATATAAAGTTATAAAAAATGA
* *
7577359 GTATATATGTA-AACATATATATACGTATAAAGTTATAAAAAAT
1 GTATATAGGTATAA-ATATATATACATATAAAGTTATAAAAAAT
7577402 ATATAAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 2 0.05
44 24 0.65
45 11 0.30
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (45 bp):
GTATATAGGTATAAATATATATACATATAAAGTTATAAAAAATGA
Found at i:7583173 original size:300 final size:298
Alignment explanation
Indices: 7582633--7583229 Score: 885
Period size: 300 Copynumber: 2.0 Consensus size: 298
7582623 ACCTTTAGGG
* *
7582633 TATTGACTATGTTGGAACCACCTTGTTGACCAATGCTATGACTTTCTCATGCAGTGAGTTCGTAC
1 TATTGACTATGTTGGAACCACCTGGTTGACCAATGCCATGACTTTCTCATGCAGTGAGTTCGTAC
* * * * *
7582698 AGTTGAAACATAGAAATTGCTGCCAAAAGATAGTATTTTCTTTTGCATTCAGAGCCTTCTTCATG
66 AGTTGAAACATAGAAAGTGCTACCAAAAGATAGTATTTTCTCTTCCATTCAAAGCCTTCTTCATG
* * *
7582763 CTCATGAATTTCTCTATACAAATTAGAATGTTTAAACCAATCTTGTCATGGCACTGTATGACAAT
131 CTCATGAATTTCTATATACAAATTAGAATGTTTAAACCAAGCTTGTCATGGCACTGTAAGACAAT
* *
7582828 TATTGTTTTTCTCTTTGAAGTTGTGTTTCAATAGTCTTTAACTGTTTATTCCAT-AGGTGTTCTA
196 TATTGTTTTTCTCTTTGAAATTGTGTCTCAATAGTCTTTAACTGTTTATTCC-TCAGGTGTTCTA
*
7582892 CCACTGCCAACATCACAGCATTGTACTGCTTTTATATTA
260 CCACTGCCAACATCACAGCATTGTACTGCGTTTATATTA
*
7582931 TATTGACTATGTTGGAACCACCTGGTT-AGCCAATGCCATGACTTTCTCATGCAGTTTGTGTTCG
1 TATTGACTATGTTGGAACCACCTGGTTGA-CCAATGCCATGACTTTCTCATGCAG--TGAGTTCG
* * *
7582995 TACAGTTGAAACCTAGAAAGTGCTACCCAAAGATAGTATTTTCTCTTCCATTTAAAGCCTTCTTC
63 TACAGTTGAAACATAGAAAGTGCTACCAAAAGATAGTATTTTCTCTTCCATTCAAAGCCTTCTTC
* **
7583060 ATGCTCATGAATTTCTATATACAAATTAGAATGTTTAACCCAAGCTTGTTGTGGCACTGTACAG-
128 ATGCTCATGAATTTCTATATACAAATTAGAATGTTTAAACCAAGCTTGTCATGGCACTGTA-AGA
* *
7583124 CAATTATTGTTTTTCTCTTTGAAATTGTGTCTCAGTAGTCTTTAACTGTTTATTCCTCTGGTGTT
192 CAATTATTGTTTTTCTCTTTGAAATTGTGTCTCAATAGTCTTTAACTGTTTATTCCTCAGGTGTT
** ** *
7583189 CTACTGCTGCCAACATTGCAGCATTGTATTGCGTTTATATT
257 CTACCACTGCCAACATCACAGCATTGTACTGCGTTTATATT
7583230 CTTTCTCTTT
Statistics
Matches: 267, Mismatches: 27, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
297 1 0.00
298 50 0.19
299 1 0.00
300 214 0.80
301 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (298 bp):
TATTGACTATGTTGGAACCACCTGGTTGACCAATGCCATGACTTTCTCATGCAGTGAGTTCGTAC
AGTTGAAACATAGAAAGTGCTACCAAAAGATAGTATTTTCTCTTCCATTCAAAGCCTTCTTCATG
CTCATGAATTTCTATATACAAATTAGAATGTTTAAACCAAGCTTGTCATGGCACTGTAAGACAAT
TATTGTTTTTCTCTTTGAAATTGTGTCTCAATAGTCTTTAACTGTTTATTCCTCAGGTGTTCTAC
CACTGCCAACATCACAGCATTGTACTGCGTTTATATTA
Found at i:7583628 original size:13 final size:13
Alignment explanation
Indices: 7583610--7583638 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7583600 TACTCAATAG
7583610 TATGTCTCCTGCT
1 TATGTCTCCTGCT
7583623 TATGTCTCCTGCT
1 TATGTCTCCTGCT
7583636 TAT
1 TAT
7583639 TTACTTACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.28, G:0.14, T:0.48
Consensus pattern (13 bp):
TATGTCTCCTGCT
Found at i:7596202 original size:2 final size:2
Alignment explanation
Indices: 7596195--7596248 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
7596185 TGATTCTTGG
7596195 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7596237 AT AT AT AT AT AT
1 AT AT AT AT AT AT
7596249 TACAACGAGC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7597564 original size:20 final size:20
Alignment explanation
Indices: 7597541--7597578 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7597531 AAATATTTTT
*
7597541 TAAATTTTAAAATATTTACA
1 TAAATTTTAAAAAATTTACA
7597561 TAAATTTTAAAAAATTTA
1 TAAATTTTAAAAAATTTA
7597579 AAGAATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAATTTTAAAAAATTTACA
Found at i:7602087 original size:2 final size:2
Alignment explanation
Indices: 7602080--7602113 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7602070 CACATAGGTG
7602080 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7602114 GTGTTTTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7603323 original size:36 final size:36
Alignment explanation
Indices: 7603276--7603391 Score: 117
Period size: 36 Copynumber: 3.2 Consensus size: 36
7603266 ATTTCTTACG
* *
7603276 CAACGGATAGTACATATTTCTTACGTTTTATATCGC
1 CAACGGATAGTACACATTTCTTACGTTTTATATTGC
** * * *
7603312 CAACGGATAGTATGCATTTCTTGCGTTTCATATTAC
1 CAACGGATAGTACACATTTCTTACGTTTTATATTGC
** * *
7603348 CAACAAATGAGT-CACATCTCTTACATTTTATATTGC
1 CAACGGAT-AGTACACATTTCTTACGTTTTATATTGC
7603384 CAACGGAT
1 CAACGGAT
7603392 GGCTTGAACT
Statistics
Matches: 61, Mismatches: 18, Indels: 2
0.75 0.22 0.02
Matches are distributed among these distances:
36 58 0.95
37 3 0.05
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (36 bp):
CAACGGATAGTACACATTTCTTACGTTTTATATTGC
Found at i:7614686 original size:30 final size:30
Alignment explanation
Indices: 7614638--7614719 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
7614628 GATTGAATCA
*
7614638 AAATTAAAGTTTCATGTATATA-ATTACACC
1 AAATTAAAATTTCATGTATA-AGATTACACC
** *
7614668 AAATTAAAATTTTGTGTATAAGATTACACAT
1 AAATTAAAATTTCATGTATAAGATTACAC-C
* *
7614699 AAAATAAAAATTCATGTATAA
1 AAATTAAAATTTCATGTATAA
7614720 TTTTAAAATT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 1 0.02
30 24 0.57
31 17 0.40
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (30 bp):
AAATTAAAATTTCATGTATAAGATTACACC
Found at i:7614717 original size:31 final size:29
Alignment explanation
Indices: 7614648--7614719 Score: 72
Period size: 31 Copynumber: 2.4 Consensus size: 29
7614638 AAATTAAAGT
* *
7614648 TTCATGTATATAATTACACCAAATTAAAAT
1 TTCATGTATA-AATTACACCAAAATAAAAA
** *
7614678 TTTGTGTATAAGATTACACATAAAATAAAAA
1 TTCATGTATAA-ATTACAC-CAAAATAAAAA
7614709 TTCATGTATAA
1 TTCATGTATAA
7614720 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
29 1 0.03
30 15 0.45
31 17 0.52
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.36
Consensus pattern (29 bp):
TTCATGTATAAATTACACCAAAATAAAAA
Found at i:7615336 original size:16 final size:16
Alignment explanation
Indices: 7615317--7615356 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
7615307 TTCCCACGTT
7615317 AGGTTTTTGGATTTTA
1 AGGTTTTTGGATTTTA
** *
7615333 AGGTTTAGGGTTTTTA
1 AGGTTTTTGGATTTTA
7615349 AGGTTTTT
1 AGGTTTTT
7615357 AGGGTTTTGG
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.55
Consensus pattern (16 bp):
AGGTTTTTGGATTTTA
Found at i:7615359 original size:18 final size:16
Alignment explanation
Indices: 7615328--7615364 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 16
7615318 GGTTTTTGGA
7615328 TTTTAAGGTTTAGGGT
1 TTTTAAGGTTTAGGGT
7615344 TTTTAAGGTTTTTAGGGT
1 TTTTAAGG--TTTAGGGT
7615362 TTT
1 TTT
7615365 GGAGAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.16, C:0.00, G:0.27, T:0.57
Consensus pattern (16 bp):
TTTTAAGGTTTAGGGT
Found at i:7615932 original size:21 final size:21
Alignment explanation
Indices: 7615902--7615964 Score: 117
Period size: 21 Copynumber: 3.0 Consensus size: 21
7615892 CAAGTTACAT
7615902 ACATAATGTATAATCATTATAA
1 ACAT-ATGTATAATCATTATAA
7615924 ACATATGTATAATCATTATAA
1 ACATATGTATAATCATTATAA
7615945 ACATATGTATAATCATTATA
1 ACATATGTATAATCATTATA
7615965 TGCTTAAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
21 37 0.90
22 4 0.10
ACGTcount: A:0.48, C:0.10, G:0.05, T:0.38
Consensus pattern (21 bp):
ACATATGTATAATCATTATAA
Found at i:7616745 original size:41 final size:41
Alignment explanation
Indices: 7616598--7616730 Score: 214
Period size: 41 Copynumber: 3.2 Consensus size: 41
7616588 AACAGCTCTT
* * * *
7616598 AGCCTGCTAGACCTATA-GTCCGAAATATATCACCGGCATTA
1 AGCCTGCTAGACGTA-AGGTCTGAATTATTTCACCGGCATTA
7616639 AGCCTGCTAGACGTAAGGTCTGAATTATTTCACCGGCATTA
1 AGCCTGCTAGACGTAAGGTCTGAATTATTTCACCGGCATTA
7616680 AGCCTGCTAGACGTAAGGTCTGAATTATTTCACCGGCATTA
1 AGCCTGCTAGACGTAAGGTCTGAATTATTTCACCGGCATTA
7616721 AGCCTGCTAG
1 AGCCTGCTAG
7616731 GAACATAGCC
Statistics
Matches: 87, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 1 0.01
41 86 0.99
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAGGTCTGAATTATTTCACCGGCATTA
Found at i:7617013 original size:2 final size:2
Alignment explanation
Indices: 7617006--7617093 Score: 176
Period size: 2 Copynumber: 44.0 Consensus size: 2
7616996 TAACCTCTTT
7617006 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7617048 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7617090 TA TA
1 TA TA
7617094 GGCACAAAAA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 86 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7619589 original size:124 final size:125
Alignment explanation
Indices: 7619210--7619620 Score: 716
Period size: 125 Copynumber: 3.3 Consensus size: 125
7619200 GGGTTGTTAC
*
7619210 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTTGACTTGAT
1 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTTGACTTGAC
7619275 GTTTTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
66 GTTTTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
*
7619335 AAATTGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTTGACTTGAC
1 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTTGACTTGAC
* * *
7619400 GTTTCTGAGCAAATGGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATG
66 GTTTTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* * * *
7619460 CAATCGCGCCCTCGTGGATGCGCTTTTGCTACAGTAGGTCCT-GAAAAAATAATTTCGACTTGAC
1 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTTGACTTGAC
7619524 GTTTTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
66 GTTTTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* *
7619584 AAATCGCGTCCTCGTGGAAGCGCTTTTGCTACAGTAG
1 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
7619621 CATGTTTGGG
Statistics
Matches: 270, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
124 111 0.41
125 159 0.59
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (125 bp):
AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTTGACTTGAC
GTTTTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
Found at i:7624651 original size:28 final size:28
Alignment explanation
Indices: 7624611--7624723 Score: 199
Period size: 28 Copynumber: 4.0 Consensus size: 28
7624601 NNNNNNNNNN
*
7624611 GCTTTACCATTAAACTCGCACACTTAGT
1 GCTTTACAATTAAACTCGCACACTTAGT
7624639 GCTTTACAATTAAACTCGCACACTTAGT
1 GCTTTACAATTAAACTCGCACACTTAGT
7624667 GCTTTACAATTAAACTCGCACACTTAGT
1 GCTTTACAATTAAACTCGCACACTTAGT
* *
7624695 GCTTCACAATTAAATTCGCACACTTAGT
1 GCTTTACAATTAAACTCGCACACTTAGT
7624723 G
1 G
7624724 TCGAAAGTCA
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 82 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.32
Consensus pattern (28 bp):
GCTTTACAATTAAACTCGCACACTTAGT
Found at i:7626072 original size:13 final size:13
Alignment explanation
Indices: 7626054--7626086 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
7626044 GCTTTATTAT
7626054 TTTTTTGGTTTAA
1 TTTTTTGGTTTAA
7626067 TTTTTT-GTTTAA
1 TTTTTTGGTTTAA
7626079 TTTGTTTG
1 TTT-TTTG
7626087 TAATCTAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.73
Consensus pattern (13 bp):
TTTTTTGGTTTAA
Found at i:7626087 original size:13 final size:12
Alignment explanation
Indices: 7626054--7626087 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
7626044 GCTTTATTAT
7626054 TTTTTTGGTTTAA
1 TTTTTT-GTTTAA
7626067 TTTTTTGTTTAA
1 TTTTTTGTTTAA
7626079 TTTGTTTGT
1 TTT-TTTGT
7626088 AATCTAGGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.74
Consensus pattern (12 bp):
TTTTTTGTTTAA
Found at i:7627615 original size:43 final size:42
Alignment explanation
Indices: 7627550--7627922 Score: 319
Period size: 43 Copynumber: 8.8 Consensus size: 42
7627540 GCGTCGCTAA
** * * **
7627550 CTTTAGCGGCG-TTTGTAGAAAAAGCGCCGCTAAAGATCGTGGT
1 CTTTAGCGGCGCTTT-TCCAAAAA-CGCCGCTAAAGACCATGAC
*
7627593 CTTTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGAGCATGAC
1 CTTTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCATGAC
* * *
7627635 CTTTAGCGGTGCTTTTCCCACAAACGCCGCTAAAGACCACGAC
1 CTTTAGCGGCGCTTTT-CCAAAAACGCCGCTAAAGACCATGAC
* * * *
7627678 CTTCAGCGGCGCTTTCCCCACAAGCGCCGCTAAAGACCACT-AC
1 CTTTAGCGGCGCTTT-TCCAAAAACGCCGCTAAAGACCA-TGAC
* **
7627721 CTTTAGCGGCACTTTTTCCAAAAACGCCGCTAAAGACCACAAC
1 CTTTAGCGGCGC-TTTTCCAAAAACGCCGCTAAAGACCATGAC
* *
7627764 CTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGA-C-T-AC
1 CTTTAGCGGCGCTTTT-CCAAAAACGCCGCTAAAGACCATGAC
* * *
7627804 CTTTAGCGGCACTTTTTTCACAAACGCCGCTAAAGACCACT-AC
1 CTTTAGCGGCGC-TTTTCCAAAAACGCCGCTAAAGACCA-TGAC
* * * * *
7627847 CTTTAGCGGCACTTTTTTCACAAACGCCGCTAAAGAACA-AAC
1 CTTTAGCGGCGC-TTTTCCAAAAACGCCGCTAAAGACCATGAC
* ** *
7627889 CTTTAGCGGCGATTCTAGCAAAAACGCCACTAAA
1 CTTTAGCGGCGCTT-TTCCAAAAACGCCGCTAAA
7627923 AATATAACCT
Statistics
Matches: 286, Mismatches: 31, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
40 32 0.11
41 7 0.02
42 62 0.22
43 179 0.63
44 6 0.02
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (42 bp):
CTTTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCATGAC
Found at i:7627849 original size:83 final size:85
Alignment explanation
Indices: 7627593--7627898 Score: 411
Period size: 86 Copynumber: 3.6 Consensus size: 85
7627583 AGATCGTGGT
* * * ** *
7627593 CTTTAGCGGCGCTTTT-CCAAAAACGCCGCTAAAGAGCATGACCTTTAGCGGTGCTTTTCCCACA
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGAACAT-ACCTTTAGCGGCACTTTTTCCACA
*
7627657 AACGCCGCTAAAGACCACGAC
65 AACGCCGCTAAAGACCACAAC
* * * * * *
7627678 CTTCAGCGGCGCTTTCCCCACAAGCGCCGCTAAAGACCACTACCTTTAGCGGCACTTTTTCCAAA
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGAACA-TACCTTTAGCGGCACTTTTTCCACA
7627743 AACGCCGCTAAAGACCACAAC
65 AACGCCGCTAAAGACCACAAC
*
7627764 CTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAG-AC-TACCTTTAGCGGCACTTTTTTCACAA
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGAACATACCTTTAGCGGCACTTTTTCCACAA
*
7627827 ACGCCGCTAAAGACCACTAC
66 ACGCCGCTAAAGACCACAAC
** *
7627847 CTTTAGCGGCACTTTTTTCACAAACGCCGCTAAAGAACAAACCTTTAGCGGC
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGAACATACCTTTAGCGGC
7627899 GATTCTAGCA
Statistics
Matches: 196, Mismatches: 21, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
83 76 0.39
84 2 0.01
85 27 0.14
86 90 0.46
87 1 0.01
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (85 bp):
CTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGAACATACCTTTAGCGGCACTTTTTCCACAA
ACGCCGCTAAAGACCACAAC
Found at i:7634266 original size:7 final size:7
Alignment explanation
Indices: 7634256--7634294 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
7634246 CACTAACTCT
7634256 TAACCCC
1 TAACCCC
7634263 TAACCCC
1 TAACCCC
*
7634270 TAACCCT
1 TAACCCC
7634277 TAACCCC
1 TAACCCC
*
7634284 AAACCCC
1 TAACCCC
7634291 TAAC
1 TAAC
7634295 TACTAACTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.33, C:0.51, G:0.00, T:0.15
Consensus pattern (7 bp):
TAACCCC
Found at i:7634301 original size:21 final size:21
Alignment explanation
Indices: 7634248--7634295 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
7634238 CCTTAAATCA
*
7634248 CTAACTCTTAACCCCTAACCC
1 CTAACTCTTAACCCCAAACCC
*
7634269 CTAACCCTTAACCCCAAACCC
1 CTAACTCTTAACCCCAAACCC
7634290 CTAACT
1 CTAACT
7634296 ACTAACTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.31, C:0.48, G:0.00, T:0.21
Consensus pattern (21 bp):
CTAACTCTTAACCCCAAACCC
Done.