Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 29 of 168
Found at i:7634458 original size:14 final size:14
Alignment explanation
Indices: 7634438--7634477 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
7634428 CCATAATCTA
7634438 TAAACCATATA-CC
1 TAAACCATATATCC
*
7634451 ATATACCATATATCC
1 -TAAACCATATATCC
7634466 TAAACCATATAT
1 TAAACCATATAT
7634478 ATTAAACCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 21 0.91
15 2 0.09
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAACCATATATCC
Found at i:7635046 original size:41 final size:41
Alignment explanation
Indices: 7634807--7635040 Score: 387
Period size: 41 Copynumber: 5.7 Consensus size: 41
7634797 AAATGTTTTT
* *
7634807 GCGGCGCTTTTCCAAAAACGCCGCTAAAGACCAGAGCATTA
1 GCGGCGCTTCTCCAAAAACGCCGCTAAAGACCTGAGCATTA
* * *
7634848 GCGGCGCTTCTCCAAAAACGCAGCTAAAGCCCTAAGCATTA
1 GCGGCGCTTCTCCAAAAACGCCGCTAAAGACCTGAGCATTA
* * *
7634889 GCGGCGCTTCTCCAAAAACGCAGCTAAAGCCCTAAGCATTA
1 GCGGCGCTTCTCCAAAAACGCCGCTAAAGACCTGAGCATTA
7634930 GCGGCGCTTCTCCAAAAACGCCGCTAAAGACCTGAGCATTA
1 GCGGCGCTTCTCCAAAAACGCCGCTAAAGACCTGAGCATTA
*
7634971 GCGGCGCTTCTCCAAAAACGCCGCTAAAGACCCGAGCATTA
1 GCGGCGCTTCTCCAAAAACGCCGCTAAAGACCTGAGCATTA
7635012 GCGGCGCTTCTCCAAAAACGCCGCTAAAG
1 GCGGCGCTTCTCCAAAAACGCCGCTAAAG
7635041 CCCCGAAAGG
Statistics
Matches: 184, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 184 1.00
ACGTcount: A:0.30, C:0.32, G:0.21, T:0.16
Consensus pattern (41 bp):
GCGGCGCTTCTCCAAAAACGCCGCTAAAGACCTGAGCATTA
Found at i:7643909 original size:3 final size:3
Alignment explanation
Indices: 7643901--7643925 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7643891 TTGGCTTTGC
7643901 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
7643926 GGCTCTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:7654732 original size:40 final size:42
Alignment explanation
Indices: 7654677--7654759 Score: 143
Period size: 41 Copynumber: 2.0 Consensus size: 42
7654667 TCGAAGATAG
7654677 GACACATGGTCGTGTCCCAGCCC-TGTAACTCACTGACTTGA
1 GACACATGGTCGTGTCCCAGCCCGTGTAACTCACTGACTTGA
*
7654718 GACACAT-GTCGTGTCTCAGCCCGTGTAACTCACTGACTTGA
1 GACACATGGTCGTGTCCCAGCCCGTGTAACTCACTGACTTGA
7654759 G
1 G
7654760 TCATACAGCC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 14 0.35
41 26 0.65
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.25
Consensus pattern (42 bp):
GACACATGGTCGTGTCCCAGCCCGTGTAACTCACTGACTTGA
Found at i:7655753 original size:7 final size:7
Alignment explanation
Indices: 7655732--7655761 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
7655722 ATTCACATCT
7655732 TATTTCA
1 TATTTCA
7655739 TCATTTCA
1 T-ATTTCA
7655747 TATTTCA
1 TATTTCA
7655754 TATTTCA
1 TATTTCA
7655761 T
1 T
7655762 TTCTCATCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.57
Consensus pattern (7 bp):
TATTTCA
Found at i:7655768 original size:14 final size:15
Alignment explanation
Indices: 7655732--7655761 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7655722 ATTCACATCT
7655732 TATTTCATCATTTCA
1 TATTTCATCATTTCA
7655747 TATTTCAT-ATTTCA
1 TATTTCATCATTTCA
7655761 T
1 T
7655762 TTCTCATCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTTCATCATTTCA
Found at i:7657334 original size:45 final size:45
Alignment explanation
Indices: 7657269--7657446 Score: 186
Period size: 45 Copynumber: 4.0 Consensus size: 45
7657259 CTTCAAGCCA
* * * *
7657269 CAAATCTTATCTGC-CAAAAGTTACAGT-GAAGTAGATTGAAGATAG
1 CAAATCTTATCT-CTCTAAAGTTGCAGTAG-AGCAGATTAAAGATAG
** * **
7657314 TGAATCTTATCTCTCTAAAGTTGCAGTAGAGCATATTAAAGCCA-
1 CAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATAG
* *
7657358 CAAATCTTATCT-TCCTGAAGTTGCAGTGGAGCAGATTGAAA-ATAG
1 CAAATCTTATCTCT-CTAAAGTTGCAGTAGAGCAGATT-AAAGATAG
7657403 CAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATA
1 CAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATA
7657447 CAATTTTTTT
Statistics
Matches: 108, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 35 0.32
45 70 0.65
46 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.29
Consensus pattern (45 bp):
CAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATAG
Found at i:7657366 original size:89 final size:89
Alignment explanation
Indices: 7657263--7657443 Score: 272
Period size: 89 Copynumber: 2.0 Consensus size: 89
7657253 AAGCGGCTTC
* * **
7657263 AAGCCACAAATCTTATCTGCCAAAAGTTACAGTGAAGTAGATTGAAGATAGTGAATCTTATCTCT
1 AAGCCACAAATCTTATCTGCCAAAAGTTACAGTGAAGCAGATTGAAAATAGCAAATCTTATCTCT
*
7657328 CTAAAGTTGCAGTAGAGCATATTA
66 CTAAAGTTGCAGTAGAGCAGATTA
* ** * *
7657352 AAGCCACAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAAATAGCAAATCTTATCTCT
1 AAGCCACAAATCTTATCTGCCAAAAGTTACAGTGAAGCAGATTGAAAATAGCAAATCTTATCTCT
7657417 CTAAAGTTGCAGTAGAGCAGATTA
66 CTAAAGTTGCAGTAGAGCAGATTA
7657441 AAG
1 AAG
7657444 ATACAATTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 82 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (89 bp):
AAGCCACAAATCTTATCTGCCAAAAGTTACAGTGAAGCAGATTGAAAATAGCAAATCTTATCTCT
CTAAAGTTGCAGTAGAGCAGATTA
Found at i:7657466 original size:89 final size:88
Alignment explanation
Indices: 7657316--7657611 Score: 260
Period size: 89 Copynumber: 3.3 Consensus size: 88
7657306 GAAGATAGTG
* * * *
7657316 AATCTTATCTCTCTAAAGTTGCAGTAGAGCATATTAAAGCCACAAATCTTATCTTCCTGAAGTTG
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTT-TTGAAGTTA
7657381 CAGTGGAGCAGATTGAA-AATAGCA
65 CAGTGGAGCAGATTGAACAATA-CA
* * * *
7657405 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATACAATTTTTTTCCTTTTGAAGTTA
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTAT-CTTTTGAAGTTA
* *
7657470 TAGTGG-GTCAGATTAAATCAAGTCACA
65 CAGTGGAG-CAGATTGAA-CAA-T-ACA
* * * ** * * * * *
7657497 AATCTCATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCTATAAGTCTTATCTCTTTAAAGTTG
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCT-TTTGAAGTTA
*
7657562 CAGTGGAGTAGATTGAAGC-A-ACA
65 CAGTGGAGCAGATTGAA-CAATACA
* *
7657585 ATTCCTATAC-CTCTAAAGTTGCAGTAG
1 AATCTTAT-CTCTCTAAAGTTGCAGTAG
7657612 GTTAGAATGA
Statistics
Matches: 164, Mismatches: 34, Indels: 19
0.76 0.16 0.09
Matches are distributed among these distances:
88 22 0.13
89 67 0.41
90 3 0.02
91 5 0.03
92 65 0.40
93 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (88 bp):
AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTTTTGAAGTTAC
AGTGGAGCAGATTGAACAATACA
Found at i:7657602 original size:44 final size:44
Alignment explanation
Indices: 7657321--7657609 Score: 133
Period size: 44 Copynumber: 6.5 Consensus size: 44
7657311 TAGTGAATCT
* * * * * *
7657321 TATCTCTCTAAAGTTGCAGTAGAGCATATTAAAGCCACAAATCT
1 TATCTCTCTAAAGTTGCAGTGGAGCAGATTGAAGCAACAAGTCC
* * * *
7657365 TATCT-TCCTGAAGTTGCAGTGGAGCAGATTGAA-AATAGCAAATCT
1 TATCTCT-CTAAAGTTGCAGTGGAGCAGATTGAAGCA-A-CAAGTCC
* * * **
7657410 TATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAG-ATACAATTTT
1 TATCTCTCTAAAGTTGCAGTGGAGCAGATTGAAGCA-ACAAGTCC
* * * ** * * *
7657454 TTTC-CTTTTGAAGTTATAGTGG-GTCAGATTAAATCAAGTCACAAAT-C
1 TATCTC-TCTAAAGTTGCAGTGGAG-CAGATTGAAGC-A---ACAAGTCC
* * * * * *
7657501 TCATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCTATAAGTCT
1 T-ATCTCTCTAAAGTTGCAGTGGAGCAGATTGAAGCAACAAGTCC
* * *
7657546 TATCTCTTTAAAGTTGCAGTGGAGTAGATTGAAGCAACAATTCC
1 TATCTCTCTAAAGTTGCAGTGGAGCAGATTGAAGCAACAAGTCC
7657590 TATAC-CTCTAAAGTTGCAGT
1 TAT-CTCTCTAAAGTTGCAGT
7657610 AGGTTAGAAT
Statistics
Matches: 186, Mismatches: 43, Indels: 32
0.71 0.16 0.12
Matches are distributed among these distances:
43 3 0.02
44 111 0.60
45 40 0.22
46 2 0.01
47 1 0.01
48 27 0.15
49 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (44 bp):
TATCTCTCTAAAGTTGCAGTGGAGCAGATTGAAGCAACAAGTCC
Found at i:7657604 original size:136 final size:137
Alignment explanation
Indices: 7657356--7657604 Score: 315
Period size: 136 Copynumber: 1.8 Consensus size: 137
7657346 ATATTAAAGC
* * *
7657356 CACAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAAATAGCAAATCTTATCTCTCTAA
1 CACAAATCTCATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAAATAGCAAATCTTATCTCTCTAA
* * * * *
7657421 AGTTGCAGTAGAGCAGATTAAAGATACAATTTTTTTCCTTTTGAAGTTATAGTGGGTCAGATTAA
66 AGTTGCAGTAGAGCAGATTAAAGATACAATTCTATACCTTCTAAAGTTATAGTGGGTCAGATTAA
7657486 ATCAAGT
131 ATCAAGT
** * * *
7657493 CACAAATCTCATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCTA-TAAGTCTTATCTCTTTAA
1 CACAAATCTCATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAAATAGCAAATCTTATCTCTCTAA
* * *
7657557 AGTTGCAGTGGAGTAGATTGAAGCA-ACAATTCCTATACC-TCTAAAGTT
66 AGTTGCAGTAGAGCAGATTAAAG-ATACAATT-CTATACCTTCTAAAGTT
7657605 GCAGTAGGTT
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
136 48 0.51
137 46 0.49
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (137 bp):
CACAAATCTCATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAAATAGCAAATCTTATCTCTCTAA
AGTTGCAGTAGAGCAGATTAAAGATACAATTCTATACCTTCTAAAGTTATAGTGGGTCAGATTAA
ATCAAGT
Found at i:7657823 original size:14 final size:15
Alignment explanation
Indices: 7657795--7657826 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
7657785 TAAATAAAAC
7657795 CCAATAATTAAAAGT
1 CCAATAATTAAAAGT
7657810 CCAAT-ATTAAAAGT
1 CCAATAATTAAAAGT
7657824 CCA
1 CCA
7657827 GTCCATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.50, C:0.19, G:0.06, T:0.25
Consensus pattern (15 bp):
CCAATAATTAAAAGT
Found at i:7658502 original size:44 final size:44
Alignment explanation
Indices: 7658439--7658527 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
7658429 AATAGGGTGC
*
7658439 CAAAATGGCACCGTTTAGAGGTGCTCCAAAATGCCCCAAAACGA
1 CAAAATGGAACCGTTTAGAGGTGCTCCAAAATGCCCCAAAACGA
*
7658483 CAAAATGGAACCGTTTAGAGGTGTTCCAAAATGCCCCAAAACGA
1 CAAAATGGAACCGTTTAGAGGTGCTCCAAAATGCCCCAAAACGA
7658527 C
1 C
7658528 GTCGTTTTGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (44 bp):
CAAAATGGAACCGTTTAGAGGTGCTCCAAAATGCCCCAAAACGA
Found at i:7659196 original size:3 final size:3
Alignment explanation
Indices: 7659188--7659320 Score: 110
Period size: 3 Copynumber: 44.7 Consensus size: 3
7659178 CGTATTACAC
7659188 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * * * *
7659236 ATT ATT -TAT GTT AAT AAT ATG ATG GTA ACT ATT ATA ATT ATT TTT
1 ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
7659281 ATT ATT ATT A-A ATT -TGT TTT ATT ATT ATT ATT ATC ATT AT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT AT
7659321 AGTGTATTAT
Statistics
Matches: 106, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
2 3 0.03
3 101 0.95
4 2 0.02
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:7661152 original size:42 final size:42
Alignment explanation
Indices: 7661106--7661230 Score: 169
Period size: 42 Copynumber: 3.0 Consensus size: 42
7661096 TAGAAAAAAA
* * *
7661106 CGCCGCTAAAGACCATGTTCTTTAGAGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* *
7661148 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTCTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
** * *
7661190 CGCCGCTAACCAACATGAACTCTAGCGGCGTTTTTTTCTAA
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAA
7661231 ATATGACACT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
Found at i:7661484 original size:21 final size:21
Alignment explanation
Indices: 7661441--7661490 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
7661431 TTTTGCTCTG
* *
7661441 CTCTGCTTCTCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTACAGC
*
7661462 CTCTGCTTCCCTCGCTACCGC
1 CTCTGCTTCCCTCGCTACAGC
*
7661483 CTCAGCTT
1 CTCTGCTT
7661491 TAAGTTGTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.06, C:0.46, G:0.16, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTACAGC
Found at i:7664533 original size:9 final size:9
Alignment explanation
Indices: 7664519--7664721 Score: 163
Period size: 9 Copynumber: 22.8 Consensus size: 9
7664509 TTTTTATGTA
7664519 TTATGTAAG
1 TTATGTAAG
7664528 TTATGTACTAAG
1 TTATG---TAAG
*
7664540 TTCTGT-A-
1 TTATGTAAG
7664547 TTATGTAAG
1 TTATGTAAG
7664556 TTATGTAAG
1 TTATGTAAG
*
7664565 TTGTGT-A-
1 TTATGTAAG
*
7664572 TTATGTGAG
1 TTATGTAAG
7664581 TTATGTAAG
1 TTATGTAAG
7664590 TTATGTAAG
1 TTATGTAAG
* *
7664599 TTATTTAAT
1 TTATGTAAG
7664608 TTATGTAAG
1 TTATGTAAG
*
7664617 TTTATATATAAG
1 --T-TATGTAAG
*
7664629 TTATGTAGG
1 TTATGTAAG
*
7664638 CTATGT-A-
1 TTATGTAAG
* *
7664645 TTATCTAAA
1 TTATGTAAG
*
7664654 TAATGTAAG
1 TTATGTAAG
*
7664663 TTA-GGAAGG
1 TTATGTAA-G
7664672 TTATGT-A-
1 TTATGTAAG
7664679 TTATGTAAG
1 TTATGTAAG
*
7664688 TTATTTAAG
1 TTATGTAAG
7664697 TTATGTAAG
1 TTATGTAAG
7664706 TTATGTAAG
1 TTATGTAAG
7664715 TTATGTA
1 TTATGTA
7664722 GGCCATGTAT
Statistics
Matches: 154, Mismatches: 24, Indels: 32
0.73 0.11 0.15
Matches are distributed among these distances:
7 20 0.13
8 9 0.06
9 107 0.69
10 2 0.01
11 1 0.01
12 15 0.10
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:7664590 original size:34 final size:34
Alignment explanation
Indices: 7664547--7664721 Score: 172
Period size: 34 Copynumber: 4.9 Consensus size: 34
7664537 AAGTTCTGTA
* *
7664547 TTATGTAAGTTATGTAAGTTGTGTATTATGTGAG
1 TTATGTAAGTTATGTAAGTTATGTATTATGTAAG
*
7664581 TTATGTAAGTTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGT-A-TTATGTAAG
* * * * *
7664617 TTTATATATAAGTTATGTAGGCTATGTATTATCTAAA
1 --T-TATGTAAGTTATGTAAGTTATGTATTATGTAAG
* *
7664654 TAATGTAAGTTA-GGAAGGTTATGTATTATGTAAG
1 TTATGTAAGTTATGTAA-GTTATGTATTATGTAAG
*
7664688 TTATTTAAGTTATGTAAGTTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTATGT-A-TTATGTA
7664722 GGCCATGTAT
Statistics
Matches: 113, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
33 2 0.02
34 62 0.55
35 6 0.05
36 15 0.13
37 7 0.06
38 2 0.02
39 19 0.17
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAGTTATGTATTATGTAAG
Found at i:7664729 original size:18 final size:18
Alignment explanation
Indices: 7664679--7664730 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
7664669 AGGTTATGTA
** *
7664679 TTATGTAAGTTATTTAAG
1 TTATGTAAGCCATGTAAG
**
7664697 TTATGTAAGTTATGTAAG
1 TTATGTAAGCCATGTAAG
*
7664715 TTATGTAGGCCATGTA
1 TTATGTAAGCCATGTA
7664731 TTATGTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.31, C:0.04, G:0.21, T:0.44
Consensus pattern (18 bp):
TTATGTAAGCCATGTAAG
Found at i:7664729 original size:27 final size:27
Alignment explanation
Indices: 7664679--7664730 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
7664669 AGGTTATGTA
* **
7664679 TTATGTAAGTTATTTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGCCATGTAAG
*
7664706 TTATGTAAGTTATGTAGGCCATGTA
1 TTATGTAAGTTATGTAAGCCATGTA
7664731 TTATGTTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.31, C:0.04, G:0.21, T:0.44
Consensus pattern (27 bp):
TTATGTAAGTTATGTAAGCCATGTAAG
Found at i:7664781 original size:33 final size:34
Alignment explanation
Indices: 7664739--7664811 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 34
7664729 TATTATGTTA
*
7664739 TTATATAAGTTATGCA-AGTT-TATATATTGTATG
1 TTATTTAAGTTATGCACAGTTAT-TATATTGTATG
*
7664772 TTATTTAAGTTATGTATCAGTTATTATATTGTATG
1 TTATTTAAGTTATGCA-CAGTTATTATATTGTATG
7664807 TTATT
1 TTATT
7664812 ATATAAGTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 14 0.40
35 20 0.57
36 1 0.03
ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53
Consensus pattern (34 bp):
TTATTTAAGTTATGCACAGTTATTATATTGTATG
Found at i:7664794 original size:86 final size:84
Alignment explanation
Indices: 7664593--7664874 Score: 227
Period size: 86 Copynumber: 3.3 Consensus size: 84
7664583 ATGTAAGTTA
* * * * *
7664593 TGTAAGTTATTTAATTTATGTA-AGTTTATATATAAGTTATGTAGGCTATGTATTATCTAAATAA
1 TGTATGTTATTTAAGTTATGTATAG--T-TAT-TAAGTTATGTAGGCTATGTATTATGT-TATTA
* * * *
7664657 TGTAAGTTA-GGAAGGTTATGTATT
61 TATAAGTTATGCAAGTTTATATA-T
* *
7664681 ATGTAAGTTATTTAAGTTATGTA-AGTTATGTAAGTTATGTAGGCCATGTATTATGTTATTATAT
1 -TGTATGTTATTTAAGTTATGTATAGTTAT-TAAGTTATGTAGGCTATGTATTATGTTATTATAT
7664745 AAGTTATGCAAGTTTATATAT
64 AAGTTATGCAAGTTTATATAT
* * *
7664766 TGTATGTTATTTAAGTTATGTATCAGTTATT-A--TATTGTATGTTAT-TATATAAGTTATTATA
1 TGTATGTTATTTAAGTTATGTAT-AGTTATTAAGTTA-TGTAGGCTATGTAT-TATGTTATTATA
** *
7664827 TAAGATTCTATATAGGTTTATATAT
63 TAAG--T-TATGCAAGTTTATATAT
*
7664852 TGTATGTTATTTAACTTATGTAT
1 TGTATGTTATTTAAGTTATGTAT
7664875 TATGTAAGTT
Statistics
Matches: 166, Mismatches: 19, Indels: 19
0.81 0.09 0.09
Matches are distributed among these distances:
82 5 0.03
83 22 0.13
84 22 0.13
85 14 0.08
86 79 0.48
87 1 0.01
89 23 0.14
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.49
Consensus pattern (84 bp):
TGTATGTTATTTAAGTTATGTATAGTTATTAAGTTATGTAGGCTATGTATTATGTTATTATATAA
GTTATGCAAGTTTATATAT
Found at i:7664821 original size:12 final size:12
Alignment explanation
Indices: 7664806--7664830 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7664796 TATATTGTAT
7664806 GTTATTATATAA
1 GTTATTATATAA
7664818 GTTATTATATAA
1 GTTATTATATAA
7664830 G
1 G
7664831 ATTCTATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (12 bp):
GTTATTATATAA
Found at i:7665905 original size:13 final size:13
Alignment explanation
Indices: 7665872--7665909 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7665862 AAATAACTTG
7665872 CAACAACATTAAC
1 CAACAACATTAAC
*
7665885 C-CCTAACATTAAC
1 CAAC-AACATTAAC
7665898 CAACAACATTAA
1 CAACAACATTAA
7665910 GCAAACTTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 1 0.05
13 19 0.90
14 1 0.05
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (13 bp):
CAACAACATTAAC
Found at i:7666548 original size:29 final size:28
Alignment explanation
Indices: 7666509--7666568 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 28
7666499 TTCACTTGTC
7666509 AAAATGTTACTGCTTAATACCCTAAACA
1 AAAATGTTACTGCTTAATACCCTAAACA
7666537 AAAATAGTTACTGCTTAATACCCTAAACA
1 AAAAT-GTTACTGCTTAATACCCTAAACA
7666566 AAA
1 AAA
7666569 TAAATTGGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 5 0.16
29 26 0.84
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (28 bp):
AAAATGTTACTGCTTAATACCCTAAACA
Found at i:7668508 original size:14 final size:15
Alignment explanation
Indices: 7668471--7668511 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
7668461 CATAAATTCT
*
7668471 AAACCTTAAACCCCA
1 AAACCTCAAACCCCA
*
7668486 AAAAC-CAAACCCC-
1 AAACCTCAAACCCCA
7668499 AAACCTCAAACCC
1 AAACCTCAAACCC
7668512 TAAGCCCCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
13 4 0.18
14 14 0.64
15 4 0.18
ACGTcount: A:0.49, C:0.44, G:0.00, T:0.07
Consensus pattern (15 bp):
AAACCTCAAACCCCA
Found at i:7668519 original size:21 final size:21
Alignment explanation
Indices: 7668495--7668535 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
7668485 AAAAACCAAA
7668495 CCCCAAACCTCAAACCCTAAG
1 CCCCAAACCTCAAACCCTAAG
*
7668516 CCCCAAATCTCAAACCCTAA
1 CCCCAAACCTCAAACCCTAA
7668536 AAGTCAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.46, G:0.02, T:0.12
Consensus pattern (21 bp):
CCCCAAACCTCAAACCCTAAG
Found at i:7669755 original size:72 final size:73
Alignment explanation
Indices: 7669659--7669793 Score: 175
Period size: 72 Copynumber: 1.9 Consensus size: 73
7669649 TTTATTGTCA
* * * * * *
7669659 AGCGCCACTAATTCTTATACACCTCAAGACCGAACGCTGCGTTTTGGTTAAGAT-TTTTGCAGCG
1 AGCGCCACTAATTCTAATACACCTCAAGACCAAAAGCTGCGCTTTAGATAAGATATTTTGCAGCG
7669723 TTTTTCCT
66 TTTTTCCT
* *
7669731 AGCGTCACTAATTCTAAT-CTACCTCAAGACTAAAAGCTGCGCTTTAGATAAGATATTTTGCAG
1 AGCGCCACTAATTCTAATAC-ACCTCAAGACCAAAAGCTGCGCTTTAGATAAGATATTTTGCAG
7669794 TGCGTTCAGA
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
71 1 0.02
72 44 0.83
73 8 0.15
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (73 bp):
AGCGCCACTAATTCTAATACACCTCAAGACCAAAAGCTGCGCTTTAGATAAGATATTTTGCAGCG
TTTTTCCT
Found at i:7669936 original size:114 final size:114
Alignment explanation
Indices: 7669810--7670026 Score: 326
Period size: 114 Copynumber: 1.9 Consensus size: 114
7669800 CAGACAGGCT
* * *
7669810 CCGCTAATACTGTGCTTTAGCGGCGTGTTCTCCAAAGCGCCACTAACTCTAATCTACCTCAAGAC
1 CCGCTAATACTGTGCTTTAGCGGCGTGTTCTCCAAAACGCCACTAACTCTAATATACCTCAAAAC
* *
7669875 CAAACGGTGCGTTTTGGTTAAGATCTTTTGCGGCGCTTGTTGTCAAACG
66 CAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTGTTGTCAAACG
* * ** * *
7669924 CCGCTAATACTGTTCTTTAGCGGCGTTTTCTTGAAAACGCCACTAATTTTAATATACCTCAAAAC
1 CCGCTAATACTGTGCTTTAGCGGCGTGTTCTCCAAAACGCCACTAACTCTAATATACCTCAAAAC
*
7669989 CAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTT
66 CAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT
7670027 ACAAATAAAC
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
114 91 1.00
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.32
Consensus pattern (114 bp):
CCGCTAATACTGTGCTTTAGCGGCGTGTTCTCCAAAACGCCACTAACTCTAATATACCTCAAAAC
CAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTGTTGTCAAACG
Found at i:7670037 original size:114 final size:114
Alignment explanation
Indices: 7669736--7670045 Score: 311
Period size: 114 Copynumber: 2.7 Consensus size: 114
7669726 TTCCTAGCGT
* * * * * * * *
7669736 CACTAATTCTAATCTACCTCAAGACTAAAAGCTGCGCTTTAGATAAGATATTTTGCAGTGCG-TT
1 CACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGATATTTTGC-G-GCGCTT
* ** * *
7669800 CAGA-CAGGCTCCGCTAATACTGTGCTTTAGCGGCGTGTTCTCCAAAGCGC
64 CAAATCAAACGCCGCTAATACTGTGCTTTAGCGGCGTGTTCTCCAAAACGC
* * * * **
7669850 CACTAACTCTAATCTACCTCAAGACCAAACGGTGCGTTTTGGTTAAGATCTTTTGCGGCGCTTGT
1 CACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCA
** * * **
7669915 TGTCAAACGCCGCTAATACTGTTCTTTAGCGGCGTTTTCTTGAAAACGC
66 AATCAAACGCCGCTAATACTGTGCTTTAGCGGCGTGTTCTCCAAAACGC
* * *
7669964 CACTAATTTTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTAC
1 CACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT-C
*
7670029 AAAT-AAACGCCACTAAT
65 AAATCAAACGCCGCTAAT
7670046 GATATTCTTT
Statistics
Matches: 161, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
112 3 0.02
113 3 0.02
114 154 0.96
115 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (114 bp):
CACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCA
AATCAAACGCCGCTAATACTGTGCTTTAGCGGCGTGTTCTCCAAAACGC
Found at i:7670080 original size:114 final size:114
Alignment explanation
Indices: 7669736--7670082 Score: 283
Period size: 114 Copynumber: 3.0 Consensus size: 114
7669726 TTCCTAGCGT
* * * * * * * *
7669736 CACTAATTCTAATCTACCTCAAGACTAAAAGCTGCGCTTTAGATAAGATATTTTGCAGTGCG-TT
1 CACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGATATTTTGC-G-GCGCTT
* ** * * * * * ** *
7669800 CAGA-CAGGCTCCGCTAATACTGTGCTTTAGCGGCGTGTTCTCCAAAGCGC
64 CAAATCAAACGCCACTAATACTATTCTTTAGCGGCGTTTTCTAAAAAACGC
* * * * **
7669850 CACTAACTCTAATCTACCTCAAGACCAAACGGTGCGTTTTGGTTAAGATCTTTTGCGGCGCTTGT
1 CACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCA
** * * **
7669915 TGTCAAACGCCGCTAATACTGTTCTTTAGCGGCGTTTTCTTGAAAACGC
66 AATCAAACGCCACTAATACTATTCTTTAGCGGCGTTTTCTAAAAAACGC
* * *
7669964 CACTAATTTTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTAC
1 CACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT-C
*
7670029 AAAT-AAACGCCACTAATGA-TATTCTTTTA-CGGCGTTTGT-TAAAAAATGC
65 AAATCAAACGCCACTAAT-ACTATTC-TTTAGCGGCGTTT-TCTAAAAAACGC
7670078 CACTA
1 CACTA
7670083 GATGTTCGGG
Statistics
Matches: 191, Mismatches: 36, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
112 3 0.02
113 3 0.02
114 178 0.93
115 7 0.04
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (114 bp):
CACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCA
AATCAAACGCCACTAATACTATTCTTTAGCGGCGTTTTCTAAAAAACGC
Found at i:7688143 original size:27 final size:27
Alignment explanation
Indices: 7688105--7688157 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
7688095 AAAATAGAAT
* *
7688105 TTTCCTTCATTTCTAAGAAGGTCAAAC
1 TTTCATTCATTTCTAAGAAAGTCAAAC
* *
7688132 TTTCATTCATTTTTTAGAAAGTCAAA
1 TTTCATTCATTTCTAAGAAAGTCAAA
7688158 GTATAATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (27 bp):
TTTCATTCATTTCTAAGAAAGTCAAAC
Found at i:7692107 original size:29 final size:30
Alignment explanation
Indices: 7692048--7692108 Score: 70
Period size: 31 Copynumber: 2.0 Consensus size: 30
7692038 AATCTCAAAA
* **
7692048 TTATATATGAATTTTGGTTTAACGTGTAATT
1 TTATATATGAATTTTGATTT-ACGTAAAATT
*
7692079 TTATATATGAATTTTGATTT-TGTAAAATT
1 TTATATATGAATTTTGATTTACGTAAAATT
7692108 T
1 T
7692109 AATACAATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 7 0.27
31 19 0.73
ACGTcount: A:0.31, C:0.02, G:0.13, T:0.54
Consensus pattern (30 bp):
TTATATATGAATTTTGATTTACGTAAAATT
Found at i:7693381 original size:19 final size:21
Alignment explanation
Indices: 7693337--7693384 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7693327 TATATTATGC
7693337 TTAAATTTAATTATAAAATAT
1 TTAAATTTAATTATAAAATAT
*
7693358 ATAAATATTAA-TA-AAAAT-T
1 TTAAAT-TTAATTATAAAATAT
7693377 TTAAATTT
1 TTAAATTT
7693385 TTAAATAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 2 0.08
19 6 0.25
20 5 0.21
21 7 0.29
22 4 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TTAAATTTAATTATAAAATAT
Found at i:7695663 original size:21 final size:20
Alignment explanation
Indices: 7695639--7695762 Score: 72
Period size: 21 Copynumber: 6.0 Consensus size: 20
7695629 TTCTTACGAC
7695639 TTTATAAAATTTTATAATTTT
1 TTTAT-AAATTTTATAATTTT
* *
7695660 TTTACTATATTTTATAATCTT
1 TTTA-TAAATTTTATAATTTT
* * * *
7695681 TATA-AAATGTTACAAATTT
1 TTTATAAATTTTATAATTTT
* * *
7695700 TTTATAATTTTTTTCTATTTT
1 TTTATAAATTTTAT-AATTTT
* * *
7695721 TTAATAACTTTTA-AATATT
1 TTTATAAATTTTATAATTTT
*
7695740 TTTATTAAAATTTAATAATTTT
1 TTTA-T-AAATTTTATAATTTT
7695762 T
1 T
7695763 ATAACTTTTA
Statistics
Matches: 73, Mismatches: 24, Indels: 11
0.68 0.22 0.10
Matches are distributed among these distances:
19 20 0.27
20 6 0.08
21 40 0.55
22 7 0.10
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (20 bp):
TTTATAAATTTTATAATTTT
Found at i:7695733 original size:30 final size:29
Alignment explanation
Indices: 7695699--7695783 Score: 82
Period size: 30 Copynumber: 2.8 Consensus size: 29
7695689 GTTACAAATT
7695699 TTTTATAATTTTTTTCTATTTTTTAATAAC
1 TTTTATAATTTTTTT-TATTTTTTAATAAC
*** *
7695729 TTTTA-AATATTTTTATTAAAATTTAATAAT
1 TTTTATAAT-TTTTT-TTATTTTTTAATAAC
*
7695759 TTTTATAACTTTTATTTATTTTTTA
1 TTTTATAA-TTTTTTTTATTTTTTA
7695784 TTATTTTTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
29 3 0.07
30 32 0.74
31 7 0.16
32 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (29 bp):
TTTTATAATTTTTTTTATTTTTTAATAAC
Found at i:7695781 original size:20 final size:20
Alignment explanation
Indices: 7695696--7695784 Score: 74
Period size: 20 Copynumber: 4.5 Consensus size: 20
7695686 AATGTTACAA
* * *
7695696 ATTTTTTATAATTTTTTTCT
1 ATTTTTTATAACTTTTATAT
*
7695716 ATTTTTTAATAACTTTTAAAT
1 ATTTTTT-ATAACTTTTATAT
**
7695737 A-TTTTTATTAAAATTTA-AT
1 ATTTTTTA-TAACTTTTATAT
* *
7695756 AATTTTTATAACTTTTATTT
1 ATTTTTTATAACTTTTATAT
7695776 ATTTTTTAT
1 ATTTTTTAT
7695785 TATTTTTTGC
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
19 11 0.20
20 34 0.62
21 10 0.18
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.65
Consensus pattern (20 bp):
ATTTTTTATAACTTTTATAT
Found at i:7696587 original size:21 final size:20
Alignment explanation
Indices: 7696545--7696588 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
7696535 TTATCCGAAA
*
7696545 CCCCCAAACTTTTTTACTTT
1 CCCCCAAACTTTTTTACATT
7696565 CCCCCAATACTTTTATT-CATT
1 CCCCCAA-ACTTTT-TTACATT
7696586 CCC
1 CCC
7696589 ACCGTCCCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 12 0.57
22 2 0.10
ACGTcount: A:0.20, C:0.39, G:0.00, T:0.41
Consensus pattern (20 bp):
CCCCCAAACTTTTTTACATT
Found at i:7698584 original size:28 final size:28
Alignment explanation
Indices: 7698544--7698599 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
7698534 GCGCCGGCAC
7698544 CGCCTTATGCGGTGGCCGAAAAAATGAA
1 CGCCTTATGCGGTGGCCGAAAAAATGAA
7698572 CGCCTTATGCGGTGGCCGAAAAAATGAA
1 CGCCTTATGCGGTGGCCGAAAAAATGAA
7698600 AAAAACCAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.21, G:0.29, T:0.18
Consensus pattern (28 bp):
CGCCTTATGCGGTGGCCGAAAAAATGAA
Found at i:7698818 original size:14 final size:13
Alignment explanation
Indices: 7698799--7698828 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
7698789 TTTAAATGGT
7698799 ACACAAAAAAACAA
1 ACACAAAAAAA-AA
7698813 ACACAAAAAAAAA
1 ACACAAAAAAAAA
7698826 ACA
1 ACA
7698829 AAATCTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (13 bp):
ACACAAAAAAAAA
Found at i:7699592 original size:44 final size:44
Alignment explanation
Indices: 7699507--7699618 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 44
7699497 TAGTTGCGAT
* *
7699507 CTGCTCT-CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGATCTAAGGCTTTAA-C
* *
7699551 C-GCTCTACTGCAACTTCAGGGAGATAGGAT-TATCGGCTTTAAC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGATCTA-AGGCTTTAAC
* * *
7699594 CTACTCCACTGTAACTTCAGGGAGA
1 CTGCTCTACTGCAACTTCAGGGAGA
7699619 CAAGGCCTAG
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
43 9 0.16
44 49 0.84
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (44 bp):
CTGCTCTACTGCAACTTCAGGGAGATAAGATCTAAGGCTTTAAC
Found at i:7699708 original size:44 final size:44
Alignment explanation
Indices: 7699660--7700504 Score: 144
Period size: 44 Copynumber: 19.2 Consensus size: 44
7699650 TATCTTGGAA
*
7699660 AGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * *
7699704 AGATAAGATTT-ACAATCTTCAACCTACTCTACTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
7699748 AGACAAGGCTTGGT-GGCTTAAATCTGCTTTCCAC-AAT-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTTAATCTGC--TCCACTACTGCTTAGG-G
* * *
7699792 AGATAAGATTTGTAGTCTTTGATCTGCTCCATTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * *
7699836 AGATAAGATCT-ACAATCTTTAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * *
7699880 AGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* *
7699924 AGATAAGACTTT-TCGTCTTTGATCTGCTCTACTACTGCTTAGGG
1 AGATAAGA-TTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * *
7699968 AAATAAGACTT-ACAAT-TTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTT-AATCTGCTCCACTACTGCTTAGGG
* * * * * * *
7700012 AGACAAGGCTTGGT-GGCTTAAATCTGTTTCC-C-ACTGTCTT-GGAA
1 AGATAA-GATTTGTCGTCTTTAATCTG-CTCCACTACTG-CTTAGG-G
* * * *
7700056 AGATAAGATTCGCCGTCTTTGATCTGCTCCACTATTGCTTAGGG
1 AGATAAGATTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
7700100 AGATAAGATCT-ACAAT-TTTCAA-CTTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTT-AATC-TGCTCCACTACTGCTTAGGG
* * * * * * **
7700144 AGACAAGGCTTGGTCG-CTTAAATCTACTTCCCACTA-T-CTTTGAA
1 AGATAA-GATTTGTCGTCTTTAATCTGC-T-CCACTACTGCTTAGGG
*
7700188 AGATAAGATTT-TCCGT-TTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGT-CGTCTTT-AATCTGCTCCACTACTGCTTAGGG
* * * * * * * *
7700232 AGATAAGATCT-ACAAT-TTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTT-AATCTGCTCCACTACTGCTTAGGG
* * * * * *
7700276 AGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * *
7700320 AGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * *
7700364 AGATATGATCT-ACAATTTTTAACCTACTCCGCTACTG-TTCAGGG
1 AGATAAGATTTGTC-GTCTTTAATCTGCTCCACTACTGCTT-AGGG
* * * * * * *
7700408 AGACAAGGCTTGGT-GGCTTAAATCTACTTCCTACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTTAATCTGC-TCC-ACTACTGCTTAGG-G
* **
7700452 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
7700496 AGATAAGAT
1 AGATAAGAT
7700505 CTACAATTTT
Statistics
Matches: 535, Mismatches: 196, Indels: 140
0.61 0.23 0.16
Matches are distributed among these distances:
42 26 0.05
43 70 0.13
44 370 0.69
45 49 0.09
46 20 0.04
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (44 bp):
AGATAAGATTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
Found at i:7700697 original size:132 final size:132
Alignment explanation
Indices: 7699610--7700686 Score: 1730
Period size: 132 Copynumber: 8.2 Consensus size: 132
7699600 CACTGTAACT
* * *
7699610 TCAGGGAGACAAGGCCTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
* * **
7699675 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACAATCTTCAACCTACTCTACTGCT
66 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCT
7699740 GC
131 GC
* * **
7699742 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTTCCACAATCTTGGAAAGATAAGATTTGTAG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
*
7699807 TCTTTGATCTGCTCCATTACTGCTTAGGGAGATAAGATCTACAATCTTT-AACCTACTCCGCTGC
66 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT-TTTCAACCTACTCCGCTGC
7699871 TGC
130 TGC
*
7699874 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGACTTT-TC
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGA-TTTGCC
* *
7699938 GTCTTTGATCTGCTCTACTACTGCTTAGGGAAATAAGA-CTTACAATTTTCAACCTACTCCGCTG
65 GTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC-TACAATTTTCAACCTACTCCGCTG
7700002 CTGC
129 CTGC
* * *
7700006 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGTTTCCCACTGTCTTGGAAAGATAAGATTCGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
* *
7700071 TCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTACAATTTTCAACTTACTCCGCTGCT
66 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCT
7700136 GC
131 GC
* * * *
7700138 TCAGGGAGACAAGGCTTGGTCGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTTCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
7700203 T-TTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGC
66 TCTTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGC
7700267 TGC
130 TGC
*
7700270 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
* * *
7700335 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATATGATCTACAATTTTTAACCTACTCCGCTACT
66 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCT
*
7700400 GT
131 GC
* *
7700402 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCTACTATCTTGGAAAGATAAGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
*
7700467 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCT
66 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCT
7700532 GC
131 GC
** *
7700534 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGAGTCCCACTATCTTGGAAAGATAATATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
** * * *
7700599 TCTTCAATCTACTCCACTACTACTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
66 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCT
7700664 GC
131 GC
7700666 TCAGGGAGACAAGGCTTGGTG
1 TCAGGGAGACAAGGCTTGGTG
7700687 TCTTTGATCT
Statistics
Matches: 878, Mismatches: 59, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
131 9 0.01
132 860 0.98
133 9 0.01
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (132 bp):
TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCT
GC
Found at i:7712871 original size:3 final size:3
Alignment explanation
Indices: 7712863--7712913 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
7712853 ATATATATAG
7712863 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7712911 TAA
1 TAA
7712914 ATATACTAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7713003 original size:23 final size:21
Alignment explanation
Indices: 7712967--7713015 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 21
7712957 ATATACGTAT
7712967 AAATATAAAAATATTCATTTAA
1 AAATATAAAAATATTCA-TTAA
7712989 AAATATGAAAAATATTCATTAA
1 AAATAT-AAAAATATTCATTAA
7713011 AAATA
1 AAATA
7713016 AATAAGTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (21 bp):
AAATATAAAAATATTCATTAA
Found at i:7717479 original size:66 final size:66
Alignment explanation
Indices: 7717372--7717504 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
7717362 GAGCTCATAG
7717372 AATACGTGAATCAGAATTGTTCGCAACAGAGTTAGACCACACGTGGTGACCCCAAGGGCAAGAAA
1 AATACGTGAATCAGAATTGTTCGCAACAGAGTTAGACCACACGTGGTGACCCCAAGGGCAAGAAA
7717437 A
66 A
*
7717438 AATACGTGAATCAGAATTGTTCGCAACAGAGTTAGAGCACACGTGGTGACCCCAAGGGCAAGAAA
1 AATACGTGAATCAGAATTGTTCGCAACAGAGTTAGACCACACGTGGTGACCCCAAGGGCAAGAAA
7717503 A
66 A
7717504 A
1 A
7717505 GGTTAAGGCT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.17
Consensus pattern (66 bp):
AATACGTGAATCAGAATTGTTCGCAACAGAGTTAGACCACACGTGGTGACCCCAAGGGCAAGAAA
A
Found at i:7719076 original size:69 final size:69
Alignment explanation
Indices: 7718991--7719466 Score: 346
Period size: 69 Copynumber: 6.9 Consensus size: 69
7718981 AAGCGAATAG
* * *
7718991 CCGCAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCCCAGTTGTCATATTAAGGTTCGCAGGTGA
1 CCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTCGCAGGCGA
7719056 AGAA
66 AGAA
* * * * * * * * ** * * * *
7719060 TCACAGCCTCTAACACAGATGGCGATAGCAAGGCTCCCAACTGTTGTATTAAGGCTCACAAGCAA
1 CCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTCGCAGGCGA
*
7719125 AGAG
66 AGAA
* * * * * * * *
7719129 CCGCAGCCCCCACCATAGTTAGCAAGAACAAAGCTCCCATG-TGTTATATAAAGGCTCGCAGGCG
1 CCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCA-GCTGTCATATTAAGGTTCGCAGGCG
*
7719193 AAGAG
65 AAGAA
* * * * * ** * * *
7719198 CCGTAGCCTCCAACATAATTAGTGAGAGCAAAACTCTTAACTATCATATTAAGGCTT-GCAGGTG
1 CCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATATTAAGG-TTCGCAGGCG
*
7719262 AAGAG
65 AAGAA
* * ** *
7719267 CCGCAGCCTCCAACACAGTTAGCGAAAGTAAAGCTCTTAGCTATCATATTAAGGCTT-GCAGGCG
1 CCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATATTAAGG-TTCGCAGGCG
*
7719331 AAGAG
65 AAGAA
*** * * * * * * * **
7719336 CTATAGCCCCCAGCATAGTTAGCAAGAACAAAGCTCCCAGGTGTCATATTAAGGCTCATAGGCGA
1 CCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTCGCAGGCGA
* *
7719401 GGAG
66 AGAA
* * * *
7719405 CTGCAGCCTCCAACACAGTTAGTGAGAACAAAGCTCCCAGCTGTTATATTAAGGTTCGCAGG
1 CCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTCGCAGG
7719467 TGTAGGGGCG
Statistics
Matches: 312, Mismatches: 91, Indels: 8
0.76 0.22 0.02
Matches are distributed among these distances:
68 1 0.00
69 310 0.99
70 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.20
Consensus pattern (69 bp):
CCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTCGCAGGCGA
AGAA
Found at i:7719456 original size:207 final size:207
Alignment explanation
Indices: 7718983--7719564 Score: 637
Period size: 207 Copynumber: 2.8 Consensus size: 207
7718973 AGACTCGTAA
* *
7718983 GCGAATAGCCGCAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCCCAGTTGTCATATTAAGGTTC
1 GCGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTC
** * * * * * * * **
7719048 GCAGGTGAAGAATCACAGCCTCTAACACAGATGGCGATAGCAAGGCTCCCAACTGTTGTATTAAG
66 GCAGGTGAAGAGCCGCAGCCTCCAACACAGTTAGCGAAAGCAAAGCTCTCAACTGTCATATTAAG
* * * ** * *
7719113 GCTCACAAGCAAAGAGCCGCAGCCCCCACCATAGTTAGCAAGAACAAAGCTCCCATGTGTTATAT
131 GCTCGCAGGCGAAGAGCCATAGCCCCCACCATAGTTAGCAAGAACAAAGCTCCCAGGTGTCATAT
*
7719178 AAAGGCTCGCAG
196 AAAGGCTCACAG
* * * * ** * *
7719190 GCGAAGAGCCGTAGCCTCCAACATAATTAGTGAGAGCAAAACTCTTAACTATCATATTAAGGCTT
1 GCGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCCCAGCTGTCATATTAAGG-TT
* * * *
7719255 -GCAGGTGAAGAGCCGCAGCCTCCAACACAGTTAGCGAAAGTAAAGCTCTTAGCTATCATATTAA
65 CGCAGGTGAAGAGCCGCAGCCTCCAACACAGTTAGCGAAAGCAAAGCTCTCAACTGTCATATTAA
* * *
7719319 GGCTTGCAGGCGAAGAGCTATAGCCCCCAGCATAGTTAGCAAGAACAAAGCTCCCAGGTGTCATA
130 GGCTCGCAGGCGAAGAGCCATAGCCCCCACCATAGTTAGCAAGAACAAAGCTCCCAGGTGTCATA
* *
7719384 TTAAGGCTCATAG
195 TAAAGGCTCACAG
* * * *
7719397 GCGAGGAGCTGCAGCCTCCAACACAGTTAGTGAGAACAAAGCTCCCAGCTGTTATATTAAGGTTC
1 GCGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTC
* * * * * * * ** *
7719462 GCAGGTGTAGGGGCGCAACCCCCAGCACAATTAGTAAAAGCAAAGCTCTCAACTGTCATATTAAT
66 GCAGGTGAAGAGCCGCAGCCTCCAACACAGTTAGCGAAAGCAAAGCTCTCAACTGTCATATTAAG
* * *
7719527 ACTCGC-GAGCGAAGAGCCATAGCCCCCATCACAGTTAG
131 GCTCGCAG-GCGAAGAGCCATAGCCCCCACCATAGTTAG
7719565 TGAGAATTGA
Statistics
Matches: 303, Mismatches: 69, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
206 3 0.01
207 298 0.98
208 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.20
Consensus pattern (207 bp):
GCGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTC
GCAGGTGAAGAGCCGCAGCCTCCAACACAGTTAGCGAAAGCAAAGCTCTCAACTGTCATATTAAG
GCTCGCAGGCGAAGAGCCATAGCCCCCACCATAGTTAGCAAGAACAAAGCTCCCAGGTGTCATAT
AAAGGCTCACAG
Found at i:7719496 original size:69 final size:68
Alignment explanation
Indices: 7719092--7719525 Score: 199
Period size: 69 Copynumber: 6.3 Consensus size: 68
7719082 CGATAGCAAG
* ** * * * * * * * *
7719092 GCTCCCAACTGTTGTATTAAGGCTCACAAGCAAAGAGCCGCAGCCCCCACCATAGTTAGCAAGAA
1 GCTCCCAGCTGTCATATTAAGGCTCACAGGCGAGGAGCTGCAACCCCCAGCACAGTTAG-TAGAA
7719157 CAAA
65 CAAA
* * * * * * * * * * *
7719161 GCTCCCATG-TGTTATATAAAGGCTCGCAGGCGAAGAGCCGTAGCCTCCAACATAATTAGTGAGA
1 GCTCCCA-GCTGTCATATTAAGGCTCACAGGCGAGGAGCTGCAACCCCCAGCACAGTTAGT-AGA
*
7719225 GCAAA
64 ACAAA
* ** * * ** * * * * * * *
7719230 ACTCTTAACTATCATATTAAGGCTTGCAGGTGAAGAGCCGCAGCCTCCAACACAGTTAG-CGAAA
1 GCTCCCAGCTGTCATATTAAGGCTCACAGGCGAGGAGCTGCAACCCCCAGCACAGTTAGTAG-AA
*
7719294 GTAAA
65 -CAAA
** * ** * ** * * *
7719299 GCTCTTAGCTATCATATTAAGGCTTGCAGGCGAAGAGCTATAGCCCCCAGCATAGTTAGCAAGAA
1 GCTCCCAGCTGTCATATTAAGGCTCACAGGCGAGGAGCTGCAACCCCCAGCACAGTTAG-TAGAA
7719364 CAAA
65 CAAA
* * * * *
7719368 GCTCCCAGGTGTCATATTAAGGCTCATAGGCGAGGAGCTGCAGCCTCCAACACAGTTAGTGAGAA
1 GCTCCCAGCTGTCATATTAAGGCTCACAGGCGAGGAGCTGCAACCCCCAGCACAGTTAGT-AGAA
7719433 CAAA
65 CAAA
* * * * * * *
7719437 GCTCCCAGCTGTTATATTAAGGTTCGCAGGTGTAGGGGC-GCAACCCCCAGCACAATTAGTAAAA
1 GCTCCCAGCTGTCATATTAAGGCTCACAGGCG-AGGAGCTGCAACCCCCAGCACAGTTAGTAGAA
7719501 GCAAA
65 -CAAA
* *
7719506 GCTCTCAACTGTCATATTAA
1 GCTCCCAGCTGTCATATTAA
7719526 TACTCGCGAG
Statistics
Matches: 288, Mismatches: 67, Indels: 20
0.77 0.18 0.05
Matches are distributed among these distances:
67 1 0.00
68 4 0.01
69 275 0.95
70 7 0.02
71 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (68 bp):
GCTCCCAGCTGTCATATTAAGGCTCACAGGCGAGGAGCTGCAACCCCCAGCACAGTTAGTAGAAC
AAA
Found at i:7719506 original size:138 final size:138
Alignment explanation
Indices: 7718983--7719570 Score: 411
Period size: 138 Copynumber: 4.3 Consensus size: 138
7718973 AGACTCGTAA
* * * *
7718983 GCGAATAGCCGCAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCCCAGTTGTCATATTAAGGTTC
1 GCGAAGAGCCGCAGCCTCCAACACAGTTAGCGAGAACAAAGCTCCCAGCTGTCATATTAAGGTTC
* * * * * * * * * * **
7719048 GCAGGTGAAGAATCACAGCCTCTAACACAGA-TGGCGATAGCAAGGCTCCCAACTGTTGTATTAA
66 GCAGGCGAAGAAGCGCAACCCCCAACACA-ATTAGCAAAAGCAAAGCTCCCAACTGTCATATTAA
*
7719112 GGCTCACAA
130 GGCTCACAG
* * * * * * * *
7719121 GCAAAGAGCCGCAGCCCCCACCATAGTTAGCAAGAACAAAGCTCCCATG-TGTTATATAAAGGCT
1 GCGAAGAGCCGCAGCCTCCAACACAGTTAGCGAGAACAAAGCTCCCA-GCTGTCATATTAAGGTT
* * * * ** * * ** *
7719185 CGCAGGCGAAG-AGCCGTAGCCTCCAACATAATTAGTGAGAGCAAAACTCTTAACTATCATATTA
65 CGCAGGCGAAGAAG-CGCAACCCCCAACACAATTAGCAAAAGCAAAGCTCCCAACTGTCATATTA
**
7719249 AGGCTTGCAG
129 AGGCTCACAG
* * ** *
7719259 GTGAAGAGCCGCAGCCTCCAACACAGTTAGCGA-AAGTAAAGCTCTTAGCTATCATATTAAGGCT
1 GCGAAGAGCCGCAGCCTCCAACACAGTTAGCGAGAA-CAAAGCTCCCAGCTGTCATATTAAGG-T
* * * * **
7719323 T-GCAGGCGAAG-AGC-TATAGCCCCCAGCATAGTTAGCAAGAA-CAAAGCTCCCAGGTGTCATA
64 TCGCAGGCGAAGAAGCGCA-A-CCCCCAACACAATTAGCAA-AAGCAAAGCTCCCAACTGTCATA
*
7719384 TTAAGGCTCATAG
126 TTAAGGCTCACAG
* * * *
7719397 GCGAGGAGCTGCAGCCTCCAACACAGTTAGTGAGAACAAAGCTCCCAGCTGTTATATTAAGGTTC
1 GCGAAGAGCCGCAGCCTCCAACACAGTTAGCGAGAACAAAGCTCCCAGCTGTCATATTAAGGTTC
* * ** * * * *
7719462 GCAGGTGTAGGGGCGCAACCCCCAGCACAATTAGTAAAAGCAAAGCTCTCAACTGTCATATTAAT
66 GCAGGCGAAGAAGCGCAACCCCCAACACAATTAGCAAAAGCAAAGCTCCCAACTGTCATATTAAG
* *
7719527 ACTCGC-G
131 GCTCACAG
** * * *
7719534 AGCGAAGAGCCATAGCCCCCATCACAGTTAGTGAGAA
1 -GCGAAGAGCCGCAGCCTCCAACACAGTTAGCGAGAA
7719571 TTGAGAACTG
Statistics
Matches: 347, Mismatches: 88, Indels: 30
0.75 0.19 0.06
Matches are distributed among these distances:
136 2 0.01
137 11 0.03
138 325 0.94
139 8 0.02
140 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.20
Consensus pattern (138 bp):
GCGAAGAGCCGCAGCCTCCAACACAGTTAGCGAGAACAAAGCTCCCAGCTGTCATATTAAGGTTC
GCAGGCGAAGAAGCGCAACCCCCAACACAATTAGCAAAAGCAAAGCTCCCAACTGTCATATTAAG
GCTCACAG
Found at i:7720846 original size:15 final size:15
Alignment explanation
Indices: 7720826--7720864 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
7720816 ATGGGTAGCT
**
7720826 CTAAGAGGAGGCACA
1 CTAAGAGGAGAAACA
*
7720841 CTAAGAGGAGAAATA
1 CTAAGAGGAGAAACA
7720856 CTAAGAGGA
1 CTAAGAGGA
7720865 AGAGAATTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.46, C:0.13, G:0.31, T:0.10
Consensus pattern (15 bp):
CTAAGAGGAGAAACA
Found at i:7723054 original size:22 final size:22
Alignment explanation
Indices: 7723001--7723061 Score: 86
Period size: 22 Copynumber: 2.8 Consensus size: 22
7722991 CTTGGAATTC
* *
7723001 ATAGAGAATGTCAATACTAGGG
1 ATAGAGAATGTTAGTACTAGGG
*
7723023 ATATAGAATGTTAGTACTAGGG
1 ATAGAGAATGTTAGTACTAGGG
*
7723045 ATAGATAATGTTAGTAC
1 ATAGAGAATGTTAGTAC
7723062 CGGAGGCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (22 bp):
ATAGAGAATGTTAGTACTAGGG
Found at i:7725877 original size:29 final size:28
Alignment explanation
Indices: 7725857--7725925 Score: 81
Period size: 26 Copynumber: 2.5 Consensus size: 28
7725847 TAAAGCTTAT
7725857 AAAAATGATAAAAAAATTTTAAAAATTAA
1 AAAAAT-ATAAAAAAATTTTAAAAATTAA
*
7725886 AAAAATATAAAAACA-TTT-AAAA-TATA
1 AAAAATATAAAAAAATTTTAAAAATTA-A
*
7725912 AAAAATATTAAAAA
1 AAAAATATAAAAAA
7725926 TTTATAGTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
25 2 0.06
26 17 0.47
27 3 0.08
28 8 0.22
29 6 0.17
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.26
Consensus pattern (28 bp):
AAAAATATAAAAAAATTTTAAAAATTAA
Found at i:7725897 original size:26 final size:26
Alignment explanation
Indices: 7725868--7725928 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
7725858 AAAATGATAA
7725868 AAAAATTTTAAAA-ATTAAAAAA-ATAT
1 AAAAATTTTAAAATA-TAAAAAATAT-T
*
7725894 AAAAACATTTAAAATATAAAAAATATT
1 AAAAA-TTTTAAAATATAAAAAATATT
7725921 AAAAATTT
1 AAAAATTT
7725929 ATAGTAATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
26 7 0.23
27 20 0.67
28 3 0.10
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (26 bp):
AAAAATTTTAAAATATAAAAAATATT
Found at i:7725907 original size:17 final size:17
Alignment explanation
Indices: 7725887--7725924 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
7725877 AAAAATTAAA
7725887 AAAATATAAAAACAT-TT
1 AAAATATAAAAA-ATATT
7725904 AAAATATAAAAAATATT
1 AAAATATAAAAAATATT
7725921 AAAA
1 AAAA
7725925 ATTTATAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATATAAAAAATATT
Found at i:7726691 original size:11 final size:12
Alignment explanation
Indices: 7726654--7726696 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
7726644 CTTAACTCCC
7726654 TTTTTT-AAATA
1 TTTTTTAAAATA
* *
7726665 ATTTTAAAAATA
1 TTTTTTAAAATA
7726677 TTTTTTAAAAT-
1 TTTTTTAAAATA
7726688 TTTTTTAAA
1 TTTTTTAAA
7726697 CCGTAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TTTTTTAAAATA
Found at i:7727809 original size:7 final size:7
Alignment explanation
Indices: 7727797--7727821 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7727787 AGTCGATTGA
7727797 TATTTAG
1 TATTTAG
7727804 TATTTAG
1 TATTTAG
7727811 TATTTAG
1 TATTTAG
7727818 TATT
1 TATT
7727822 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:7728498 original size:18 final size:18
Alignment explanation
Indices: 7728467--7728506 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7728457 CAGGTGCGTT
*
7728467 TCCTAGCCCCTATATGTA
1 TCCTAACCCCTATATGTA
*
7728485 TCCTAACCCTTATATGTA
1 TCCTAACCCCTATATGTA
7728503 TCCT
1 TCCT
7728507 TTCCAAGTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.38
Consensus pattern (18 bp):
TCCTAACCCCTATATGTA
Found at i:7728962 original size:25 final size:25
Alignment explanation
Indices: 7728934--7728981 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
7728924 TATTTTGATA
7728934 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
7728959 TTATTTGATGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
7728982 ATTTTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:7729059 original size:23 final size:23
Alignment explanation
Indices: 7729024--7729566 Score: 357
Period size: 23 Copynumber: 24.2 Consensus size: 23
7729014 ATTAATACCC
7729024 TTAACTTAAAAACCCTAACCTAAT
1 TTAA-TTAAAAACCCTAACCTAAT
*
7729048 TTAATTAAAAACCTTAAACCCTAA-
1 TTAATTAAAAACCCT-AA-CCTAAT
* ***
7729072 --ACTTAAAAACCCTAA-CTCCC
1 TTAATTAAAAACCCTAACCTAAT
*
7729092 TTAACTTAAAAACCCTAACTTAA-
1 TTAA-TTAAAAACCCTAACCTAAT
7729115 TTAACTTAAAAACCCTAACCTAAT
1 TTAA-TTAAAAACCCTAACCTAAT
*
7729139 TAAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
* *
7729162 TTAATTAAGAACCCTAAACCCTAAA
1 TTAATTAAAAACCCT-AA-CCTAAT
*
7729187 TT--TT-AAAACCCTGACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
7729207 TTAATT-AAAACACTAAACCCTAA-
1 TTAATTAAAAACCCT-AA-CCTAAT
*
7729230 --ACTTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
7729251 TAAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
7729274 TTAATTAAAAACCTTAAACCCTAA-
1 TTAATTAAAAACCCT-AA-CCTAAT
* *
7729298 --ACTTAAAAATCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
7729319 TTAATTAAAAACCCTAAACCCTAA-
1 TTAATTAAAAACCCT-AA-CCTAAT
* *
7729343 --ACTTAAAAATCCTAACCTAA-
1 TTAATTAAAAACCCTAACCTAAT
7729363 -TACATTAAAAACCCTAACCTAAT
1 TTA-ATTAAAAACCCTAACCTAAT
*
7729386 TAAATTAAAAACCCTAAACCCTAA-
1 TTAATTAAAAACCCT-AA-CCTAAT
* ***
7729410 --ACTTAAAAACCCTAACC-CCC
1 TTAATTAAAAACCCTAACCTAAT
*
7729430 TTAACTTAAAAACCCTAACC---C
1 TTAA-TTAAAAACCCTAACCTAAT
*
7729451 TTAACTTAAAAACACTAACC---T
1 TTAA-TTAAAAACCCTAACCTAAT
* *
7729472 TTAATTTAAAAACACTAAACC---C
1 TTAA-TTAAAAACCCT-AACCTAAT
*
7729494 TTAACTTAAAAACCCTAA-CT--C
1 TTAA-TTAAAAACCCTAACCTAAT
7729515 TTAACTTAAAAACCCTAACCTAAT
1 TTAA-TTAAAAACCCTAACCTAAT
* * *
7729539 TTAATTAAAACCCCTAAACTAAA
1 TTAATTAAAAACCCTAACCTAAT
7729562 TTAAT
1 TTAAT
7729567 AATTTTACTT
Statistics
Matches: 431, Mismatches: 48, Indels: 81
0.77 0.09 0.14
Matches are distributed among these distances:
19 2 0.00
20 25 0.06
21 71 0.16
22 106 0.25
23 172 0.40
24 28 0.06
25 27 0.06
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (23 bp):
TTAATTAAAAACCCTAACCTAAT
Found at i:7729084 original size:45 final size:44
Alignment explanation
Indices: 7729020--7729555 Score: 346
Period size: 45 Copynumber: 12.0 Consensus size: 44
7729010 AACCATTAAT
* *
7729020 ACCCTTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCTTAA
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCT-A
***
7729065 ACCCTAAACTTAAAAACCCTAA-CTCCCTTAACTTAAAAACCCTA
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAA-TTAAAAACCCTA
* *
7729109 A-CTTAATTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
1 ACCCT-A--AACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTA
* * * *
7729155 A-CCTAATTTAATTAAGAACCCTAAACCCTAAATT--TT-AAAACCCTG
1 ACCCTAA---ACTTAAAAACCCT-AA-CCTAATTTAATTAAAAACCCTA
* * *
7729200 A-CCT-AATTTAATTAAAACACTAAACCCTAA---ACTTAAAAACCCTA
1 ACCCTAAACTT-A--AAAACCCT-AA-CCTAATTTAATTAAAAACCCTA
* *
7729244 A-CCTAATTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCTTAA
1 ACCCT-A--AACTTAAAAACCCTAACCTAATTTAATTAAAAACCCT-A
*
7729291 ACCCTAAACTTAAAAATCCTAACCTAATTTAATTAAAAACCCTAA
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCT-A
*
7729336 ACCCTAAACTTAAAAATCCTAACCTAA--TACATTAAAAACCCTA
1 ACCCTAAACTTAAAAACCCTAACCTAATTTA-ATTAAAAACCCTA
* *
7729379 A-CCTAATTAAATTAAAAACCCTAAACCCTAA---ACTTAAAAACCCTA
1 ACCCT-A--AACTTAAAAACCCT-AA-CCTAATTTAATTAAAAACCCTA
* * *
7729424 ACCCCCTTAACTTAAAAACCCTAACC---CTTAACTTAAAAACACTA
1 A--CCCTAAACTTAAAAACCCTAACCTAATTTAA-TTAAAAACCCTA
* * * * *
7729468 ACCTTTAATTTAAAAACACTAAACC---CTTAACTTAAAAACCCTA
1 ACCCTAAACTTAAAAACCCT-AACCTAATTTAA-TTAAAAACCCTA
* * *
7729511 ACTCTTAACTTAAAAACCCTAACCTAATTTAATTAAAACCCCTA
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTA
7729555 A
1 A
7729556 ACTAAATTAA
Statistics
Matches: 405, Mismatches: 44, Indels: 85
0.76 0.08 0.16
Matches are distributed among these distances:
41 3 0.01
42 24 0.06
43 55 0.14
44 77 0.19
45 156 0.39
46 58 0.14
47 16 0.04
48 16 0.04
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (44 bp):
ACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTA
Found at i:7729280 original size:112 final size:112
Alignment explanation
Indices: 7729024--7729555 Score: 663
Period size: 112 Copynumber: 4.8 Consensus size: 112
7729014 ATTAATACCC
* *
7729024 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCTTAAACCCTAAACTTAAAAACCCTAA-C
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
*** *
7729088 TCCCTTAACTTAAAAACCCTAA-CTTAATTAACTTAAAAACCCTAACCTAA
66 TAATTTAA-TTAAAAACCCTAACCCT-A--AACTTAAAAACCCTAACCTAA
* * * *
7729138 TTAAATTAAAAACCCTAACCTAATTTAATTAAGAACCCTAAACCCTAAATTTTAAAACCCTGACC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
*
7729203 TAATTTAATT-AAAACACTAAACCCTAAACTTAAAAACCCTAACCTAA
66 TAATTTAATTAAAAACCCT-AACCCTAAACTTAAAAACCCTAACCTAA
* *
7729250 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCTTAAACCCTAAACTTAAAAATCCTAACC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
*
7729315 TAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAATCCTAACCTAA
66 TAATTTAATTAAAAACCCT-AACCCTAAACTTAAAAACCCTAACCTAA
* *
7729363 -TACATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
*** * *
7729427 -CCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACACTAACCT--
66 TAATTTAA-TTAAAAACCCTAACCCTAAACTTAAAAACCCTAACCTAA
* * * * *
7729472 TTAATTTAAAAACACTAAACC---CTTAACTTAAAAACCCT-AACTCTTAACTTAAAAACCCTAA
1 TTAAATTAAAAACCCT-AACCTAATTTAA-TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAA
*
7729533 CCTAATTTAATTAAAACCCCTAA
64 CCTAATTTAATTAAAAACCCTAA
7729556 ACTAAATTAA
Statistics
Matches: 369, Mismatches: 40, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
108 38 0.10
109 15 0.04
110 12 0.03
111 31 0.08
112 161 0.44
113 42 0.11
114 62 0.17
115 8 0.02
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.27
Consensus pattern (112 bp):
TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
TAATTTAATTAAAAACCCTAACCCTAAACTTAAAAACCCTAACCTAA
Found at i:7729760 original size:115 final size:114
Alignment explanation
Indices: 7729560--7729800 Score: 403
Period size: 115 Copynumber: 2.1 Consensus size: 114
7729550 CCCTAAACTA
* * **
7729560 AATTAATAATTTTACTTTCACATAATGTTAGATTTGGAATTTTTTTTCCTGGTACTAACAATTAA
1 AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAATTTTTTGACTGGTACTAACAATTAA
* *
7729625 TAATTTTATATAATTTGATAA-TTTTACTAATCATTACTACAATTTATC
66 TAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
7729673 AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATTTTTTGACTGGTACTAACAATT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTGG--AAATTTTTTGACTGGTACTAACAATT
7729738 AATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
64 AATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
7729789 AATTAATAATTT
1 AATTAATAATTT
7729801 CACAAACTTA
Statistics
Matches: 119, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
113 36 0.30
115 46 0.39
116 37 0.31
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.46
Consensus pattern (114 bp):
AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAATTTTTTGACTGGTACTAACAATTAA
TAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
Found at i:7733114 original size:124 final size:125
Alignment explanation
Indices: 7732786--7733161 Score: 573
Period size: 123 Copynumber: 3.0 Consensus size: 125
7732776 CTCAAACAAG
* * *
7732786 CTACTGTAGCAAAAACGCATCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCTTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
* *
7732851 CTAGAA-TCGATTTTATACTATTTGCTTAGAAACGTTAAAAAAATTTATTTCTTCCATGAC
66 CTAGAAGT-GATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTTATTTCTTCCATGAC
* *
7732911 CTAC--TAGCAGAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGTATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
*
7732974 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTTATTTCTTCCATGAC
66 CTAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTTATTTCTTCCATGAC
*
7733034 CTACTGTAGCAAAAGCGCGTCCACTAGGGCGCGA-TTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
* ** *
7733098 CTAGAAGTGATTTTATACTATTTGATCAGAAACGTCAACTCGAAA-TTATTTCTTCCAGGAC
66 CTAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAA--AAAAATTTATTTCTTCCATGAC
7733159 CTA
1 CTA
7733162 AAAACCCTAA
Statistics
Matches: 230, Mismatches: 16, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
123 114 0.50
124 65 0.28
125 48 0.21
126 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
CTAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTTATTTCTTCCATGAC
Found at i:7733879 original size:39 final size:40
Alignment explanation
Indices: 7733836--7733918 Score: 123
Period size: 39 Copynumber: 2.1 Consensus size: 40
7733826 AATTACTCAA
* * *
7733836 TTTTACTAATTTATTGCATAAAAATT-TTGAATTGTTGAT
1 TTTTACTAATTCATTGCATAAAAATTGTTAAATTGATGAT
*
7733875 TTTTACTAATTCATTGCATATAAATTGTTAAATTGATGAT
1 TTTTACTAATTCATTGCATAAAAATTGTTAAATTGATGAT
7733915 TTTT
1 TTTT
7733919 TTGGGTTAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 24 0.62
40 15 0.38
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.52
Consensus pattern (40 bp):
TTTTACTAATTCATTGCATAAAAATTGTTAAATTGATGAT
Found at i:7735613 original size:25 final size:25
Alignment explanation
Indices: 7735541--7735658 Score: 98
Period size: 25 Copynumber: 4.7 Consensus size: 25
7735531 GGACACACCA
* **
7735541 CAGCTCGCATGAGCTTCCCAATATT
1 CAGCTCGCAAGAGCTTCCTGATATT
*
7735566 CAACTCGCAAGAGCTT-CTCGATATT
1 CAGCTCGCAAGAGCTTCCT-GATATT
*
7735591 TAGCTCGCAAGAGCTTCCTGATACTT
1 CAGCTCGCAAGAGCTTCCTGATA-TT
* * *
7735617 -AGCTCTCATGAGCTT-CTCATTATT
1 CAGCTCGCAAGAGCTTCCTGA-TATT
* *
7735641 CAGCTTGAAAGAGCTTCC
1 CAGCTCGCAAGAGCTTCC
7735659 CATTTACTGC
Statistics
Matches: 74, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
24 6 0.08
25 63 0.85
26 5 0.07
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.31
Consensus pattern (25 bp):
CAGCTCGCAAGAGCTTCCTGATATT
Found at i:7735678 original size:24 final size:25
Alignment explanation
Indices: 7735624--7735678 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
7735614 CTTAGCTCTC
* *
7735624 ATGAGCTTCTCATTATTCAGCTTGA
1 ATGAGCTTCCCATTATACAGCTTGA
* * *
7735649 AAGAGCTTCCCATT-TACTGCTTGT
1 ATGAGCTTCCCATTATACAGCTTGA
7735673 ATGAGC
1 ATGAGC
7735679 ATACATGAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
24 12 0.50
25 12 0.50
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (25 bp):
ATGAGCTTCCCATTATACAGCTTGA
Found at i:7741362 original size:25 final size:25
Alignment explanation
Indices: 7741314--7741362 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7741304 TATAATTGAA
* * *
7741314 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
7741339 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
7741363 ATGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:7741809 original size:43 final size:43
Alignment explanation
Indices: 7741761--7741843 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
7741751 GTGATTGATA
*
7741761 TTGAAATGGAAAAGATGAGA-AATGAATATGAGATGAGAAAATG
1 TTGAAATGGAAAAGATGA-ACAATGAATATGAGATAAGAAAATG
* * * *
7741804 TTGAAATTGCAAAGATGAACAATGATTATGATATAAGAAA
1 TTGAAATGGAAAAGATGAACAATGAATATGAGATAAGAAA
7741844 TGAAATATGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.03
43 33 0.97
ACGTcount: A:0.51, C:0.02, G:0.23, T:0.24
Consensus pattern (43 bp):
TTGAAATGGAAAAGATGAACAATGAATATGAGATAAGAAAATG
Found at i:7746481 original size:52 final size:46
Alignment explanation
Indices: 7746463--7746854 Score: 595
Period size: 46 Copynumber: 8.3 Consensus size: 46
7746453 GACAAGTGGG
*
7746463 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACA
1 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
7746509 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
1 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
7746555 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
1 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
7746601 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
1 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
* *
7746647 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGGA
1 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC------A
*
7746699 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAA
1 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC------A
*
7746751 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACA
1 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
** * *
7746797 AAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACA
1 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
7746843 AAGTGATAAGTG
1 AAGTGATAAGTG
7746855 GCTACACTTA
Statistics
Matches: 330, Mismatches: 10, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
46 236 0.72
52 94 0.28
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (46 bp):
AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
Found at i:7746516 original size:98 final size:93
Alignment explanation
Indices: 7746396--7746854 Score: 645
Period size: 92 Copynumber: 4.8 Consensus size: 93
7746386 TTTGAGTACT
* **
7746396 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA---
*
7746461 GGAAGTGATAAGTAATAGCTTCGGCTATACTTA
63 --AAGTGATAAGTGATAGCTTCGGCTATACTTA
*
7746494 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-AAAG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAAG
7746558 TGATAAGTGATAGCTTCGGCTATACTTA
66 TGATAAGTGATAGCTTCGGCTATACTTA
*
7746586 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-AAAG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAAG
* *
7746650 TGATAAGTGATAGCTTCAGCTACACTTA
66 TGATAAGTGATAGCTTCGGCTATACTTA
7746678 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
7746743 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 C-----AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* ** *
7746782 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC-AAAG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAAG
7746846 TGATAAGTG
66 TGATAAGTG
7746855 GCTACACTTA
Statistics
Matches: 335, Mismatches: 14, Indels: 30
0.88 0.04 0.08
Matches are distributed among these distances:
92 147 0.44
97 1 0.00
98 144 0.43
104 43 0.13
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (93 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAAG
TGATAAGTGATAGCTTCGGCTATACTTA
Found at i:7746562 original size:39 final size:41
Alignment explanation
Indices: 7746468--7746946 Score: 266
Period size: 46 Copynumber: 10.8 Consensus size: 41
7746458 GTGGGAAGTG
*
7746468 ATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAA
1 ATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC--A
7746511 GTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAA
1 ---ATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC--A
7746557 GTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAA
1 ---ATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC--A
7746603 GTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAA
1 ---ATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC--A
* *
7746649 GTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGGAAA
1 ---ATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC--------A
*
7746701 GTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAA
1 ---ATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC--------A
*
7746753 GTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACAAA
1 ---ATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC--A
** * *
7746799 GTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC-
1 ---ATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
* **
7746842 A-AAGTGATAAG--T-GGCTACACTTATCTGATCAAGAAAC-
1 ATAAGTGAT-AGCTTCGGCTATACTTATCTGATCAAGTGACA
* **
7746879 A-AAGTGATAAG--T-GGCTACACTTATCTGATCAAGAAAC-
1 ATAAGTGAT-AGCTTCGGCTATACTTATCTGATCAAGTGACA
* *
7746916 A-AAGTGATAG-GT-GGCTACACTTATCTGATCA
1 ATAAGTGATAGCTTCGGCTATACTTATCTGATCA
7746947 GGGACAAGTG
Statistics
Matches: 413, Mismatches: 12, Indels: 25
0.92 0.03 0.06
Matches are distributed among these distances:
36 2 0.00
37 88 0.21
38 1 0.00
39 7 0.02
40 3 0.01
46 218 0.53
52 94 0.23
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (41 bp):
ATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACA
Found at i:7746868 original size:37 final size:37
Alignment explanation
Indices: 7746818--7746963 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
7746808 GATAGCTTTA
*
7746818 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7746855 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
7746892 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
7746929 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7746964 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:7746891 original size:150 final size:149
Alignment explanation
Indices: 7746443--7746843 Score: 490
Period size: 150 Copynumber: 2.8 Consensus size: 149
7746433 CTACACTTAT
** * *
7746443 CTGATCAAGTGACAAGTG-GGAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA
1 CTGATCAAGTGACAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGA
* * * *
7746507 CAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC------AAAGTGATAAGT
66 CAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTGGAAAGTGATAACT
* *
7746566 GATAGCTTC-G---GCTATA
131 -ATAGCTTCAGCAAACTAAA
* *
7746582 CTTATC---TGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTG
1 CTGATCAAGTGA-CAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAG
* *
7746644 ACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAG
65 ACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTGGAAAGTGATAAC
* * * *
7746709 TGATAGCTTCGGCTACACTTAT
130 T-ATAGCTTCAGC-AAACTAAA
7746731 CTGATCAAGTGACAAGTGA-AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGA
1 CTGATCAAGTGACAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGA
*
7746795 CAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
66 CAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAA
7746844 AGTGATAAGT
Statistics
Matches: 232, Mismatches: 14, Indels: 21
0.87 0.05 0.08
Matches are distributed among these distances:
136 3 0.01
137 6 0.03
138 88 0.38
139 5 0.02
144 21 0.09
145 1 0.00
149 7 0.03
150 91 0.39
151 7 0.03
152 3 0.01
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (149 bp):
CTGATCAAGTGACAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGA
CAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTGGAAAGTGATAACT
ATAGCTTCAGCAAACTAAA
Found at i:7756411 original size:31 final size:31
Alignment explanation
Indices: 7756387--7756961 Score: 775
Period size: 31 Copynumber: 18.7 Consensus size: 31
7756377 GTATATGTTT
* **
7756387 TATACATTGCCGAA-TTAATTTGTATAAAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * *
7756417 TATACATTGCTGAATTTGATTTGTTTATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * *
7756448 TATACATTGCCGAAATTGATTTGTTTATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
*
7756479 TATACATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * *
7756510 TATATATTGTCGAATTTGATTAGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
*
7756541 TATACATTGCCGAATTTGGTTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
7756572 TATACATTGCTGAA-TTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
*
7756602 TATACATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
7756633 TATATATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
7756664 TATATATTGCCGAATTTGATTTGTAAATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
7756695 TATACATTGTCGAA-TTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * *
7756725 TATACATTGTCGAATTTGATTTGTATGTGGT
1 TATACATTGCCGAATTTGATTTGTATATGGA
*
7756756 TATACATTGTCGAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
*
7756787 TATACATTGCCGAA-TTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
7756817 TATATATTGCCGAATTTGATTTGTATATGGC
1 TATACATTGCCGAATTTGATTTGTATATGGA
7756848 TATACATTGCCGAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * * *
7756879 TATTCATTGCC-AAATTGATTTATATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
7756909 TATACATTGCCAAATTTGATTCGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
*
7756940 TATATATTGCCGAA-TTGATTTG
1 TATACATTGCCGAATTTGATTTG
7756962 AGCATTAGAT
Statistics
Matches: 485, Mismatches: 55, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
30 129 0.27
31 356 0.73
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATGGA
Found at i:7756616 original size:123 final size:123
Alignment explanation
Indices: 7756415--7756961 Score: 787
Period size: 123 Copynumber: 4.4 Consensus size: 123
7756405 TTTGTATAAA
* * * *
7756415 GATATACATTGCTGAATTTGATTTGTTTATAGATATACATTGCCGAAATTGATTTGTTTATAGAT
1 GATATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCG-AATTGATTTGTATATAGAT
7756480 ATACATTGCCGAATTTGATTTGTATATGGTTATATATTGTCGAATTTGATTAGTATATG
65 ATACATTGCCGAATTTGATTTGTATATGGTTATATATTGTCGAATTTGATTAGTATATG
* *
7756539 GATATACATTGCCGAATTTGGTTTGTATATGGATATACATTGCTGAATTGATTTGTATATAGATA
1 GATATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTGATTTGTATATAGATA
* *
7756604 TACATTGCCGAATTTGATTTGTATATGGTTATATATTGCCGAATTTGATTTGTATATG
66 TACATTGCCGAATTTGATTTGTATATGGTTATATATTGTCGAATTTGATTAGTATATG
* * * *
7756662 GTTATATATTGCCGAATTTGATTTGTAAATGGATATACATTGTCGAATTGATTTGTATATAGATA
1 GATATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTGATTTGTATATAGATA
* * * *
7756727 TACATTGTCGAATTTGATTTGTATGTGGTTATACATTGTCGAATTTGATTTGTATATG
66 TACATTGCCGAATTTGATTTGTATATGGTTATATATTGTCGAATTTGATTAGTATATG
* * * *
7756785 GATATACATTGCCGAA-TTGATTTGTATATAGATATATATTGCCGAATTTGATTTGTATATGGCT
1 GATATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAA-TTGATTTGTATATAGAT
* * * *
7756849 ATACATTGCCGAATTTGATTTGTATATGGATAT-TCATTG-CCAAATTGATTTA-TATATA
65 ATACATTGCCGAATTTGATTTGTATATGGTTATAT-ATTGTCGAATTTGA-TTAGTATATG
* * *
7756907 GATATACATTGCCAAATTTGATTCGTATATGGATATATATTGCCGAATTGATTTG
1 GATATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTGATTTG
7756962 AGCATTAGAT
Statistics
Matches: 382, Mismatches: 37, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
122 61 0.16
123 281 0.74
124 40 0.10
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (123 bp):
GATATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTGATTTGTATATAGATA
TACATTGCCGAATTTGATTTGTATATGGTTATATATTGTCGAATTTGATTAGTATATG
Found at i:7756643 original size:92 final size:93
Alignment explanation
Indices: 7756387--7756961 Score: 793
Period size: 92 Copynumber: 6.2 Consensus size: 93
7756377 GTATATGTTT
* ** * *
7756387 TATACATTGCCGAA-TTAATTTGTATAAAGATATACATTGCTGAATTTGATTTGTTTATAGATAT
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATAGATAT
* * *
7756451 ACATTGCCGAAATTGATTTGTTTATAGA
66 ACATTGCCGAATTTGATTTGTATATGGA
* * * * *
7756479 TATACATTGCCGAATTTGATTTGTATATGGTTATATATTGTCGAATTTGATTAGTATATGGATAT
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATAGATAT
*
7756544 ACATTGCCGAATTTGGTTTGTATATGGA
66 ACATTGCCGAATTTGATTTGTATATGGA
* * * *
7756572 TATACATTGCTGAA-TTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGTTAT
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATAGATAT
* *
7756636 ATATTGCCGAATTTGATTTGTATATGGT
66 ACATTGCCGAATTTGATTTGTATATGGA
* * *
7756664 TATATATTGCCGAATTTGATTTGTAAATGGATATACATTGTCGAA-TTGATTTGTATATAGATAT
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATAGATAT
* * *
7756728 ACATTGTCGAATTTGATTTGTATGTGGT
66 ACATTGCCGAATTTGATTTGTATATGGA
*
7756756 TATACATTGTCGAATTTGATTTGTATATGGATATACATTGCCGAA-TTGATTTGTATATAGATAT
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATAGATAT
* *
7756820 ATATTGCCGAATTTGATTTGTATATGGC
66 ACATTGCCGAATTTGATTTGTATATGGA
* * *
7756848 TATACATTGCCGAATTTGATTTGTATATGGATATTCATTGCC-AAATTGATTTATATATAGATAT
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATAGATAT
* *
7756912 ACATTGCCAAATTTGATTCGTATATGGA
66 ACATTGCCGAATTTGATTTGTATATGGA
*
7756940 TATATATTGCCGAA-TTGATTTG
1 TATACATTGCCGAATTTGATTTG
7756962 AGCATTAGAT
Statistics
Matches: 430, Mismatches: 50, Indels: 7
0.88 0.10 0.01
Matches are distributed among these distances:
91 10 0.02
92 316 0.73
93 104 0.24
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (93 bp):
TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATAGATAT
ACATTGCCGAATTTGATTTGTATATGGA
Found at i:7764127 original size:35 final size:35
Alignment explanation
Indices: 7764088--7764178 Score: 119
Period size: 35 Copynumber: 2.6 Consensus size: 35
7764078 GCTAATACTT
*
7764088 TGATTCACATGTTAAGCATGTTATTATTCTGATTA
1 TGATTCACATGTTAAGCATGCTATTATTCTGATTA
* * *
7764123 TGATTCACATGTTGAGCATGCTATTATTTTGATTC
1 TGATTCACATGTTAAGCATGCTATTATTCTGATTA
* * *
7764158 TAAATCCCATGTTAAGCATGC
1 TGATTCACATGTTAAGCATGC
7764179 CACTATGTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (35 bp):
TGATTCACATGTTAAGCATGCTATTATTCTGATTA
Found at i:7764567 original size:16 final size:15
Alignment explanation
Indices: 7764542--7764571 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7764532 ATTAAGTTAA
7764542 TTAACTAAATGCAAG
1 TTAACTAAATGCAAG
7764557 TTAACCTAAATGCAA
1 TTAA-CTAAATGCAA
7764572 ATGAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.27
Consensus pattern (15 bp):
TTAACTAAATGCAAG
Found at i:7766530 original size:3 final size:3
Alignment explanation
Indices: 7766522--7766551 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7766512 TTCTCCTCTC
7766522 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7766552 TTTTTTTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7771641 original size:4 final size:4
Alignment explanation
Indices: 7771632--7771656 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7771622 GCTTTTTATT
7771632 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
7771657 CGTTTCCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:7774227 original size:19 final size:18
Alignment explanation
Indices: 7774203--7774247 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
7774193 TGCATTTTTA
7774203 TGAATTTCTTTATGAATTT
1 TGAATTTCTTTAT-AATTT
*
7774222 TGAATTTTTTTTATAATTT
1 TGAA-TTTCTTTATAATTT
7774241 TAGAATT
1 T-GAATT
7774248 ATTTGTTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.29, C:0.02, G:0.09, T:0.60
Consensus pattern (18 bp):
TGAATTTCTTTATAATTT
Found at i:7774246 original size:20 final size:21
Alignment explanation
Indices: 7774198--7774247 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
7774188 CTTCATGCAT
7774198 TTTTATGAA-TTTCTTTATGAA
1 TTTTA-GAATTTTCTTTATGAA
*
7774219 TTTT-GAATTTTTTTTAT-AA
1 TTTTAGAATTTTCTTTATGAA
7774238 TTTTAGAATT
1 TTTTAGAATT
7774248 ATTTGTTGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 9 0.35
20 13 0.50
21 4 0.15
ACGTcount: A:0.28, C:0.02, G:0.08, T:0.62
Consensus pattern (21 bp):
TTTTAGAATTTTCTTTATGAA
Found at i:7775826 original size:19 final size:20
Alignment explanation
Indices: 7775785--7775826 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
7775775 AGTCCTTTTA
*
7775785 AAATTTAAAAAATATTTATG
1 AAATTTAAAAAATATATATG
7775805 AAATTATAAAAAAT-TATA-G
1 AAATT-TAAAAAATATATATG
7775824 AAA
1 AAA
7775827 AGGGATTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 8 0.40
21 8 0.40
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
AAATTTAAAAAATATATATG
Found at i:7776321 original size:9 final size:9
Alignment explanation
Indices: 7776254--7776432 Score: 77
Period size: 10 Copynumber: 19.6 Consensus size: 9
7776244 AAAATGCGTT
7776254 AAAATTGATA
1 AAAATT-ATA
7776264 AAAATTATTA
1 AAAATTA-TA
*
7776274 AAAATCATA
1 AAAATTATA
*
7776283 AAAGGTTATA
1 AAA-ATTATA
7776293 GAAAATTATA
1 -AAAATTATA
7776303 AAAATATATA
1 AAAAT-TATA
*
7776313 AATATTATAA
1 AAAATTAT-A
*
7776323 AAATATTTTTA
1 AAA-A-TTATA
*
7776334 AACATTATA
1 AAAATTATA
7776343 AAAA-TAT-
1 AAAATTATA
* *
7776350 TAAATT-GA
1 AAAATTATA
*
7776358 AAAATGATA
1 AAAATTATA
7776367 AAAA-TATA
1 AAAATTATA
* *
7776375 GAATACTATA
1 -AAAATTATA
7776385 AAAGA--A-A
1 AAA-ATTATA
*
7776392 AAAGTTATA
1 AAAATTATA
* *
7776401 TAAATTTTA
1 AAAATTATA
*
7776410 AAAATAATTA
1 AAAATTA-TA
7776420 AAAATT-TA
1 AAAATTATA
7776428 AAAAT
1 AAAAT
7776433 ATTAGAAATA
Statistics
Matches: 126, Mismatches: 26, Indels: 36
0.67 0.14 0.19
Matches are distributed among these distances:
7 7 0.06
8 20 0.16
9 42 0.33
10 47 0.37
11 7 0.06
12 3 0.02
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (9 bp):
AAAATTATA
Found at i:7776340 original size:21 final size:21
Alignment explanation
Indices: 7776288--7776350 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
7776278 TCATAAAAGG
*
7776288 TTATAGAAAATTATAAAAATA-
1 TTATA-AACATTATAAAAATAT
*
7776309 -TATAAATATTATAAAAATAT
1 TTATAAACATTATAAAAATAT
*
7776329 TTTTAAACATTATAAAAATAT
1 TTATAAACATTATAAAAATAT
7776350 T
1 T
7776351 AAATTGAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 14 0.38
20 4 0.11
21 19 0.51
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TTATAAACATTATAAAAATAT
Found at i:7776548 original size:20 final size:21
Alignment explanation
Indices: 7776489--7776551 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
7776479 TGGTCTTTTT
* *
7776489 AAATATAT-AAAATTATTA-A
1 AAATATTTAAAAAATATTATA
7776508 AAATATTTAAAAAATCA--ATA
1 AAATATTTAAAAAAT-ATTATA
7776528 AAAT-TTTAAAAAATATTATA
1 AAATATTTAAAAAATATTATA
7776548 AAAT
1 AAAT
7776552 GTTATAAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
18 1 0.03
19 18 0.49
20 17 0.46
21 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATATTTAAAAAATATTATA
Found at i:7776551 original size:10 final size:10
Alignment explanation
Indices: 7776489--7776579 Score: 59
Period size: 10 Copynumber: 9.5 Consensus size: 10
7776479 TGGTCTTTTT
7776489 AAATA-TATA
1 AAATATTATA
7776498 AAATTATTA-A
1 AAA-TATTATA
7776508 AAATATT-TA
1 AAATATTATA
* *
7776517 AAAAATCAATA
1 AAATAT-TATA
* *
7776528 AAATTTTAAA
1 AAATATTATA
7776538 AAATATTATA
1 AAATATTATA
*
7776548 AAATGTTATA
1 AAATATTATA
* *
7776558 AGA-AGTATA
1 AAATATTATA
7776567 AAA-A-TATA
1 AAATATTATA
7776575 AAATA
1 AAATA
7776580 AATTTAAAAT
Statistics
Matches: 63, Mismatches: 13, Indels: 12
0.72 0.15 0.14
Matches are distributed among these distances:
8 7 0.11
9 21 0.33
10 27 0.43
11 8 0.13
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (10 bp):
AAATATTATA
Found at i:7779904 original size:59 final size:61
Alignment explanation
Indices: 7779833--7779949 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 61
7779823 ATCACTTTAA
* * * *
7779833 TATTAAATTAATATAATATTTA-T-CAAGGTAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTACTACAAGATAAACATTAGATTAAATTTAATATTAAATCT
*
7779892 TATTAAAATAATAGAATATTTATCTACAAGATAAACATTAGCTTAAATTTAATATTAA
1 TATTAAAATAATAGAATATTTA-CTACAAGATAAACATTAGATTAAATTTAATATTAA
7779950 CATAATCACT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 20 0.40
61 1 0.02
62 29 0.58
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (61 bp):
TATTAAAATAATAGAATATTTACTACAAGATAAACATTAGATTAAATTTAATATTAAATCT
Found at i:7783435 original size:206 final size:206
Alignment explanation
Indices: 7783079--7783467 Score: 679
Period size: 206 Copynumber: 1.9 Consensus size: 206
7783069 CTAATGGATG
*
7783079 TAAAGTAATTGACATTGTGTTTAATAAAATTATGCTTGTAGGACATAGGATAGAAAATACTTATA
1 TAAAGTAATTGACATTGTGTTTAATAAAATTATGCTTGTAGGACATAGGATAGAAAATACTTAGA
* *
7783144 TAGTGCATTTAGATGACTTGCATGATTCATTCATATGCCTTGTTGCTAAAAATGAAAATAACTCT
66 TAGTGCATTTAGATGACTTACATGATTAATTCATATGCCTTGTTGCTAAAAATGAAAATAACTCT
* *
7783209 TTGTTGTGACATAAAAAACTAGGACGTGCTAGCATGAACATTTTGTATAAATTTGGAGGAATTGG
131 TTGTTGTGACATAAAAAACTAAGACGTGCTAGCATGAACATTTCGTATAAATTTGGAGGAATTGG
7783274 AGGACATAGGA
196 AGGACATAGGA
* *
7783285 TAAAGTAATTGACATTGTGTTTAATAAGATTATGCTTGTAGGACATAGGATAGGAAATACTTAGA
1 TAAAGTAATTGACATTGTGTTTAATAAAATTATGCTTGTAGGACATAGGATAGAAAATACTTAGA
* *
7783350 TAGTGCATTTAGATGACTTATATGATTAATTCATATGCCTTGTTGCTAAAAATGAAAATAACTTT
66 TAGTGCATTTAGATGACTTACATGATTAATTCATATGCCTTGTTGCTAAAAATGAAAATAACTCT
* *
7783415 TTGTTGTGACATAGAAAACTAAGACGTGCTAGCATGAGCATTTCGTATAAATT
131 TTGTTGTGACATAAAAAACTAAGACGTGCTAGCATGAACATTTCGTATAAATT
7783468 AGCTAAAAAT
Statistics
Matches: 172, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
206 172 1.00
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.34
Consensus pattern (206 bp):
TAAAGTAATTGACATTGTGTTTAATAAAATTATGCTTGTAGGACATAGGATAGAAAATACTTAGA
TAGTGCATTTAGATGACTTACATGATTAATTCATATGCCTTGTTGCTAAAAATGAAAATAACTCT
TTGTTGTGACATAAAAAACTAAGACGTGCTAGCATGAACATTTCGTATAAATTTGGAGGAATTGG
AGGACATAGGA
Found at i:7783562 original size:21 final size:21
Alignment explanation
Indices: 7783536--7783578 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7783526 TGTGATGCAT
7783536 GTGTTAAGGGTAAACATAGAA
1 GTGTTAAGGGTAAACATAGAA
7783557 GTGTTAAGGGTAAACATAGAA
1 GTGTTAAGGGTAAACATAGAA
7783578 G
1 G
7783579 ACTTTCCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.05, G:0.30, T:0.23
Consensus pattern (21 bp):
GTGTTAAGGGTAAACATAGAA
Found at i:7787803 original size:22 final size:24
Alignment explanation
Indices: 7787760--7787803 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
7787750 TGATAATATA
7787760 TTTTGATATAACAAATTAAAGTGT
1 TTTTGATATAACAAATTAAAGTGT
*
7787784 TTTTGA-ATAA-AATTTAAAGT
1 TTTTGATATAACAAATTAAAGT
7787804 TGAAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.43
Consensus pattern (24 bp):
TTTTGATATAACAAATTAAAGTGT
Found at i:7789487 original size:10 final size:10
Alignment explanation
Indices: 7789472--7789513 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
7789462 TATATTTTTT
*
7789472 ATTTTTTATG
1 ATTTTTAATG
7789482 ATTTTTAAT-
1 ATTTTTAATG
*
7789491 ATTTTTATTG
1 ATTTTTAATG
7789501 ATTTTTAATG
1 ATTTTTAATG
7789511 ATT
1 ATT
7789514 ATATATTGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 8 0.29
10 20 0.71
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (10 bp):
ATTTTTAATG
Found at i:7789495 original size:19 final size:19
Alignment explanation
Indices: 7789465--7789509 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
7789455 ATGTATATAT
*
7789465 ATTTTTTAT-TTTTTA-TG
1 ATTTTTAATATTTTTATTG
7789482 ATTTTTAATATTTTTATTG
1 ATTTTTAATATTTTTATTG
7789501 ATTTTTAAT
1 ATTTTTAAT
7789510 GATTATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.32
18 6 0.24
19 11 0.44
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (19 bp):
ATTTTTAATATTTTTATTG
Found at i:7792131 original size:28 final size:28
Alignment explanation
Indices: 7792091--7792148 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
7792081 ATATGAAATT
*
7792091 AAAGCTTATTGAGTCTAGTTTCTCATAG
1 AAAGCTTATTGAGTCTAGTGTCTCATAG
7792119 AAAGCTTATTGAGTCTAGTGTCTCATAG
1 AAAGCTTATTGAGTCTAGTGTCTCATAG
7792147 AA
1 AA
7792149 GAAATGGAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (28 bp):
AAAGCTTATTGAGTCTAGTGTCTCATAG
Found at i:7801247 original size:542 final size:542
Alignment explanation
Indices: 7800225--7801307 Score: 2040
Period size: 542 Copynumber: 2.0 Consensus size: 542
7800215 TCATACCTTG
* *
7800225 TGAAATTCGATACGTGTTAGATGGGGATGATGATAAGAAATTACAAGATGCTTGAGAGAAGTTGA
1 TGAAATTAGATACGTGTTAGATGGAGATGATGATAAGAAATTACAAGATGCTTGAGAGAAGTTGA
7800290 GGAAATTAAAAGATAAAAGTAAATCTATTTGGAAAGAGAAGTCAAATGCCCATCAGGTTTTCACT
66 GGAAATTAAAAGATAAAAGTAAATCTATTTGGAAAGAGAAGTCAAATGCCCATCAGGTTTTCACT
7800355 AATAATTGTTACGTGGGTGAAGTTTAGGCTGAAGTCCAGGGCAAATGTTAGCTCGACTAGGTATT
131 AATAATTGTTACGTGGGTGAAGTTTAGGCTGAAGTCCAGGGCAAATGTTAGCTCGACTAGGTATT
7800420 ATAGGGCCAGGAAAACAGTGATTGAGAAGAGTGCTAGAAACCACCAGAATTGCATTCGGCAATAT
196 ATAGGGCCAGGAAAACAGTGATTGAGAAGAGTGCTAGAAACCACCAGAATTGCATTCGGCAATAT
7800485 GGTGTGAACCTTCGTCAACCACCAAACCACATTACTGTATCAACAATTTTTATTGAATAATTAGG
261 GGTGTGAACCTTCGTCAACCACCAAACCACATTACTGTATCAACAATTTTTATTGAATAATTAGG
*
7800550 ATTATACTTTTCGAAATAACATTGATAAATTTAACGGAACATAATTATATTCGCCACCATCTAGT
326 ATTATACTTTTCGAAATAACATTGATAAATTTAACGGAACATAATTATATTCACCACCATCTAGT
*
7800615 AAAGATATTATTTTGAAGATAAAATGTAAAATAATGCTTTTCAATCTTTCCATAATAAAATCCTT
391 AAAGATATTATTTTGAAGATAAAATGTAAAATAATGCTTTTCAATCATTCCATAATAAAATCCTT
*
7800680 TCACATAGTTAAAATTATTAAAGTTGTGAAAAAATTAACCACAAAACTATCTAACCGCGCTAAGT
456 TCACATAGTTAAAATTATTAAAGTTGTGAAAAAATTAACCACAAAACTATCTAACCGCGCGAAGT
7800745 TGATATTAAAGAAACAAGCTAT
521 TGATATTAAAGAAACAAGCTAT
7800767 TGAAATTAGATACGTGTTAGATGGAGATGATGATAAGAAATTACAAGATGCTTGAGAGAAGTTGA
1 TGAAATTAGATACGTGTTAGATGGAGATGATGATAAGAAATTACAAGATGCTTGAGAGAAGTTGA
*
7800832 GGAAATTAAAAGATAAAAGTAAATCTATTTGGAAAGAGAAGTCAAATGGCCATCAGGTTTTCACT
66 GGAAATTAAAAGATAAAAGTAAATCTATTTGGAAAGAGAAGTCAAATGCCCATCAGGTTTTCACT
*
7800897 AATAATTGTTACGTGGGTGAAGTTTAGGCTGAAGTCCAGGGCGAATGTTAGCTCGACTAGGTATT
131 AATAATTGTTACGTGGGTGAAGTTTAGGCTGAAGTCCAGGGCAAATGTTAGCTCGACTAGGTATT
7800962 ATAGGGCCAGGAAAACAGTGATTGAGAAGAGTGCTAGAAACCACCAGAATTGCATTCGGCAATAT
196 ATAGGGCCAGGAAAACAGTGATTGAGAAGAGTGCTAGAAACCACCAGAATTGCATTCGGCAATAT
7801027 GGTGTGAACCTTCGTCAACCACCAAACCACATTACTGTATCAACAATTTTTATTGAATAATTAGG
261 GGTGTGAACCTTCGTCAACCACCAAACCACATTACTGTATCAACAATTTTTATTGAATAATTAGG
*
7801092 ATTATACTTTTCGAAATAACATTGATAAATTTAACGGAACATAATTATGTTCACCACCATCTAGT
326 ATTATACTTTTCGAAATAACATTGATAAATTTAACGGAACATAATTATATTCACCACCATCTAGT
* *
7801157 AAAGATATTATTTTGAAGATAAAATGTAAAATAATGCTTTTCAATCATTCCATATTAAAATCGTT
391 AAAGATATTATTTTGAAGATAAAATGTAAAATAATGCTTTTCAATCATTCCATAATAAAATCCTT
* * * *
7801222 TCACATAGTTTATATTATTAAAGTTGTGAAAACATTAACCACAAAACTATCTAACCGTGCGAAGT
456 TCACATAGTTAAAATTATTAAAGTTGTGAAAAAATTAACCACAAAACTATCTAACCGCGCGAAGT
7801287 TGATATTAAAGAAACAAGCTA
521 TGATATTAAAGAAACAAGCTA
7801308 ATCATAGATA
Statistics
Matches: 527, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
542 527 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (542 bp):
TGAAATTAGATACGTGTTAGATGGAGATGATGATAAGAAATTACAAGATGCTTGAGAGAAGTTGA
GGAAATTAAAAGATAAAAGTAAATCTATTTGGAAAGAGAAGTCAAATGCCCATCAGGTTTTCACT
AATAATTGTTACGTGGGTGAAGTTTAGGCTGAAGTCCAGGGCAAATGTTAGCTCGACTAGGTATT
ATAGGGCCAGGAAAACAGTGATTGAGAAGAGTGCTAGAAACCACCAGAATTGCATTCGGCAATAT
GGTGTGAACCTTCGTCAACCACCAAACCACATTACTGTATCAACAATTTTTATTGAATAATTAGG
ATTATACTTTTCGAAATAACATTGATAAATTTAACGGAACATAATTATATTCACCACCATCTAGT
AAAGATATTATTTTGAAGATAAAATGTAAAATAATGCTTTTCAATCATTCCATAATAAAATCCTT
TCACATAGTTAAAATTATTAAAGTTGTGAAAAAATTAACCACAAAACTATCTAACCGCGCGAAGT
TGATATTAAAGAAACAAGCTAT
Found at i:7803059 original size:16 final size:17
Alignment explanation
Indices: 7803038--7803070 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7803028 ATAAAAACAG
*
7803038 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
7803054 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
7803071 ACTTTTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:7806415 original size:9 final size:9
Alignment explanation
Indices: 7806401--7806460 Score: 59
Period size: 9 Copynumber: 6.6 Consensus size: 9
7806391 ATGGGTTTGC
7806401 AAAAATAAA
1 AAAAATAAA
7806410 AAAAATAAA
1 AAAAATAAA
*
7806419 AAAGGATAAA
1 AAA-AATAAA
* *
7806429 ACAAATGAA
1 AAAAATAAA
*
7806438 CAAAATAAA
1 AAAAATAAA
7806447 AAAAA-AGAA
1 AAAAATA-AA
7806456 AAAAA
1 AAAAA
7806461 CAAAGGAACG
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
8 1 0.02
9 33 0.80
10 7 0.17
ACGTcount: A:0.82, C:0.03, G:0.07, T:0.08
Consensus pattern (9 bp):
AAAAATAAA
Found at i:7807297 original size:40 final size:40
Alignment explanation
Indices: 7807240--7807474 Score: 265
Period size: 40 Copynumber: 5.8 Consensus size: 40
7807230 ATTTCTTCTG
*
7807240 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
* * *
7807280 TCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTGGTTTTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-GATGTGA
* * *
7807322 TCCGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
* ** * **
7807362 TCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTTTTTTTT
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATGTGA
* *
7807404 TGCTGCTCCACTACTACATAGGGAGATAAGACTTGATGTGA
1 T-CTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
*
7807445 TCTGCTCCACTACTGTTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
7807475 TCTGGTTTTT
Statistics
Matches: 158, Mismatches: 30, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
39 3 0.02
40 83 0.53
41 10 0.06
42 33 0.21
43 29 0.18
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.32
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
Found at i:7807338 original size:82 final size:82
Alignment explanation
Indices: 7807238--7807478 Score: 383
Period size: 82 Copynumber: 2.9 Consensus size: 82
7807228 TGATTTCTTC
7807238 TGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
1 TGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
7807303 GATAAGATCTGTGGTTT
66 GATAAGATCTGTGGTTT
* *
7807320 TGTCCGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
1 TGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
**
7807385 GATAAGATCTGTTTTTT
66 GATAAGATCTGTGGTTT
* * * * * *
7807402 TTTGCTGCTCCACTACTACATAGGGAGATAAGACTTGATGTGATCTGCTCCACTACTGTTTAGGG
1 TGT-CTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGG
7807467 AGATAAGATCTG
65 AGATAAGATCTG
7807479 GTTTTTTTCA
Statistics
Matches: 146, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
82 80 0.55
83 66 0.45
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (82 bp):
TGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
GATAAGATCTGTGGTTT
Found at i:7807903 original size:46 final size:46
Alignment explanation
Indices: 7807587--7808704 Score: 233
Period size: 46 Copynumber: 25.1 Consensus size: 46
7807577 ATCTGCTTCG
*
7807587 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * * * ** * * *
7807633 CTGCC-AA-CCAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCT
1 CTGCCAAATACAGGAAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * * *
7807676 TTG--TAGT-CAAGG-AGGTAAAATCTGCCATCTTCGATCTGCTT-CG
1 CTGCCAAATAC-AGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* *
7807719 CTGCTAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * * * * * * *
7807765 CTGCC-AA-CCAGGGAGATAGAGTTAT-C-AGCTTCAATGTACTCCT
1 CTGCCAAATACAGGAAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * * *
7807808 CTG--TAGT-CAATG-AGGTAAAATCTGCCATCTTCGATCTGCTT-CG
1 CTGCCAAATAC-AGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* *
7807851 CTGCCAAATACAGGAAGGCAAGATATGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * * ** * * *
7807897 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCT
1 CTGCCAAATACAGGAAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * * *
7807942 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* *
7807985 CTGCCAAATACAGGAAAGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * * ** * * *
7808031 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCT
1 CTGCCAAATACAGGAAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * *
7808076 CTG--TAGT-CAAGG-AGGTAAAATCTGCCATCTTCGATCTGCTT-CG
1 CTGCCAAATAC-AGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
*
7808119 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * * * ** * * *
7808165 CTGCCAAATATAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCT
1 CTGCCAAATACAGGAAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * * *
7808210 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* * *
7808253 CTGCCAAATACAGGAATGCAAGATCTACAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * * * * ** * * *
7808299 CTTCGAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCT
1 CTGCCAAATACAGGAAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * * * *
7808344 CTG--TAGT-CAGGGAGGTAAAATCTGCCATATTCGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* * *
7808387 CTGCCAAATACAGGAAGGCAAGATCTACAATCTTTAATCTATTCCA
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * * ** * * *
7808433 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCT
1 CTGCCAAATACAGGAAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * * * *
7808478 CTG--TAGT-CAGGGAGGTAAAATCTTCCATCTTCGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* *
7808521 CTGCCAAATACAGGAATGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * * * ** * * *
7808567 CTTCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCT
1 CTGCCAAATACAGGAAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * * *
7808612 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
*
7808655 CTGCCAAATACAGGAAGGCT-AGATCTGCAATCTTCAATCTATCCCA
1 CTGCCAAATACAGGAAGG-TAAGATCTGCAATCTTCAATCTATTCCA
7808701 CTGC
1 CTGC
7808705 AACTTCAGGG
Statistics
Matches: 721, Mismatches: 276, Indels: 150
0.63 0.24 0.13
Matches are distributed among these distances:
41 24 0.03
42 69 0.10
43 137 0.19
44 24 0.03
45 138 0.19
46 303 0.42
47 26 0.04
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCTATTCCA
Found at i:7807986 original size:134 final size:134
Alignment explanation
Indices: 7807485--7808704 Score: 2160
Period size: 134 Copynumber: 9.1 Consensus size: 134
7807475 TCTGGTTTTT
* * *
7807485 TTCACTCTATTCTACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAG
1 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
*
7807550 TCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
66 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
7807615 AATC
131 AATC
* *
7807619 TTCAATCTATTCCACTGCC-AA-CCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTTTGTAG
1 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
* *
7807682 TCAAGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCTAAATACAGGAAGGCAAGATCTGC
66 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
7807747 AATC
131 AATC
* *
7807751 TTCAATCTATTCCACTGCC-AA-CCAGGGAGATAGAGTTATCAGCTTCAATGTACTCCTCTGTAG
1 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
** *
7807814 TCAATGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATATGC
66 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
7807879 AATC
131 AATC
7807883 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
1 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
*
7807948 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATCTGC
66 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
7808013 AATC
131 AATC
7808017 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
1 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
*
7808082 TCAAGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
66 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
7808147 AATC
131 AATC
*
7808151 TTCAATCTATTCCACTGCCAAATATAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
1 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
* *
7808216 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAATGCAAGATCTAC
66 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
7808281 AATC
131 AATC
* *
7808285 TTCAATCTATTCCACTTCGAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
1 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
* *
7808350 TCAGGGAGGTAAAATCTGCCATATTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTAC
66 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
7808415 AATC
131 AATC
*
7808419 TTTAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
1 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
* *
7808484 TCAGGGAGGTAAAATCTTCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAATGCAAGATCTGC
66 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
7808549 AATC
131 AATC
*
7808553 TTCAATCTATTCCACTTCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
1 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
*
7808618 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCTAGATCTGC
66 TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
7808683 AATC
131 AATC
*
7808687 TTCAATCTATCCCACTGC
1 TTCAATCTATTCCACTGC
7808705 AACTTCAGGG
Statistics
Matches: 1040, Mismatches: 44, Indels: 4
0.96 0.04 0.00
Matches are distributed among these distances:
132 251 0.24
133 4 0.00
134 785 0.75
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (134 bp):
TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGTAG
TCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
AATC
Found at i:7809350 original size:109 final size:103
Alignment explanation
Indices: 7809164--7809355 Score: 251
Period size: 109 Copynumber: 1.8 Consensus size: 103
7809154 GAAAAATGCT
*
7809164 TGAAAAAGATTATCAAAATAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAATCAATC
1 TGAAAAAGATTATCAAAATAAATGAAATTTTGTTGAGAGAAAAGCTCTAAACAAACAAATCAATC
7809229 AAGACAGAAAATTTTGCTGAGATACGAGATGTATAAGA
66 AAGACAGAAAATTTTGCTGAGATACGAGATGTATAAGA
* **
7809267 TGAAAAAGATTATCACAATGGATAAGATGGAAA-TTTGTTGAGAATAAAAGCTCTAAATGAACAA
1 TGAAAAAGATTATCA-AA---ATAA-AT-GAAATTTTGTTGAG-AGAAAAGCTCTAAACAAACAA
* * *
7809331 ATTAATCAAGATAGCAAATTTTGCT
59 ATCAATCAAGACAGAAAATTTTGCT
7809356 AGAATAAAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
103 15 0.20
104 2 0.03
107 4 0.05
108 11 0.15
109 43 0.57
ACGTcount: A:0.47, C:0.10, G:0.17, T:0.26
Consensus pattern (103 bp):
TGAAAAAGATTATCAAAATAAATGAAATTTTGTTGAGAGAAAAGCTCTAAACAAACAAATCAATC
AAGACAGAAAATTTTGCTGAGATACGAGATGTATAAGA
Found at i:7809707 original size:12 final size:12
Alignment explanation
Indices: 7809698--7809748 Score: 66
Period size: 12 Copynumber: 3.9 Consensus size: 12
7809688 CCCTTTTTAT
7809698 TTTTCTTTTTTC
1 TTTTCTTTTTTC
7809710 TTTTCTTTTTTC
1 TTTTCTTTTTTC
7809722 ATTTTTTCTTTTTTC
1 ---TTTTCTTTTTTC
7809737 TTTTCGTTTTTT
1 TTTTC-TTTTTT
7809749 TTCAAGTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
12 17 0.49
13 6 0.17
15 12 0.34
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:7809726 original size:20 final size:18
Alignment explanation
Indices: 7809690--7809748 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 18
7809680 TTAGCCTCCC
7809690 CTTTTTATTTTTCTTTTTT
1 CTTTTT-TTTTTCTTTTTT
7809709 CTTTTCTTTTTTCATTTTTT
1 CTTTT-TTTTTTC-TTTTTT
7809729 CTTTTTTCTTTTCGTTTTTT
1 CTTTTTT-TTTTC-TTTTTT
7809749 TTCAAGTGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
19 13 0.36
20 23 0.64
ACGTcount: A:0.03, C:0.14, G:0.02, T:0.81
Consensus pattern (18 bp):
CTTTTTTTTTTCTTTTTT
Found at i:7809747 original size:7 final size:7
Alignment explanation
Indices: 7809697--7809740 Score: 65
Period size: 7 Copynumber: 6.4 Consensus size: 7
7809687 CCCCTTTTTA
7809697 TTTTTCT
1 TTTTTCT
7809704 TTTTTC-
1 TTTTTCT
7809710 -TTTTCT
1 TTTTTCT
7809716 TTTTTCAT
1 TTTTTC-T
7809724 TTTTTCT
1 TTTTTCT
7809731 TTTTTCT
1 TTTTTCT
7809738 TTT
1 TTT
7809741 CGTTTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 5 0.15
7 22 0.65
8 7 0.21
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:7809748 original size:15 final size:14
Alignment explanation
Indices: 7809703--7809751 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
7809693 TTTATTTTTC
7809703 TTTTTTCTTTTC--
1 TTTTTTCTTTTCTT
7809715 TTTTTTCATTTT-TT
1 TTTTTTC-TTTTCTT
7809729 CTTTTTTCTTTTCGTT
1 -TTTTTTCTTTTC-TT
7809745 TTTTTTC
1 TTTTTTC
7809752 AAGTGAAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
12 7 0.23
13 4 0.13
14 4 0.13
15 14 0.45
16 2 0.06
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (14 bp):
TTTTTTCTTTTCTT
Found at i:7810237 original size:10 final size:11
Alignment explanation
Indices: 7810200--7810251 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
7810190 TTTTTTTTTG
*
7810200 TTTTTTTGCTT
1 TTTTTTTACTT
*
7810211 TTTATTTTCTCGTT
1 TTT-TTTT-AC-TT
7810225 TTTTTTTACTT
1 TTTTTTTACTT
*
7810236 TTTTTTTGCTT
1 TTTTTTTACTT
7810247 TTTTT
1 TTTTT
7810252 GCCCCCACTG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
11 20 0.57
12 5 0.14
13 5 0.14
14 5 0.14
ACGTcount: A:0.04, C:0.10, G:0.06, T:0.81
Consensus pattern (11 bp):
TTTTTTTACTT
Found at i:7811556 original size:12 final size:12
Alignment explanation
Indices: 7811547--7811597 Score: 66
Period size: 12 Copynumber: 3.9 Consensus size: 12
7811537 TCCTTTTTAT
7811547 TTTTCTTTTTTC
1 TTTTCTTTTTTC
7811559 TTTTCTTTTTTC
1 TTTTCTTTTTTC
7811571 ATTTTTTCTTTTTTC
1 ---TTTTCTTTTTTC
7811586 TTTTCGTTTTTT
1 TTTTC-TTTTTT
7811598 TTCAAGTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
12 17 0.49
13 6 0.17
15 12 0.34
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:7811575 original size:20 final size:18
Alignment explanation
Indices: 7811539--7811597 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 18
7811529 TTAGCCTCTC
7811539 CTTTTTATTTTTCTTTTTT
1 CTTTTT-TTTTTCTTTTTT
7811558 CTTTTCTTTTTTCATTTTTT
1 CTTTT-TTTTTTC-TTTTTT
7811578 CTTTTTTCTTTTCGTTTTTT
1 CTTTTTT-TTTTC-TTTTTT
7811598 TTCAAGTGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
19 13 0.36
20 23 0.64
ACGTcount: A:0.03, C:0.14, G:0.02, T:0.81
Consensus pattern (18 bp):
CTTTTTTTTTTCTTTTTT
Found at i:7811596 original size:7 final size:7
Alignment explanation
Indices: 7811546--7811589 Score: 65
Period size: 7 Copynumber: 6.4 Consensus size: 7
7811536 CTCCTTTTTA
7811546 TTTTTCT
1 TTTTTCT
7811553 TTTTTC-
1 TTTTTCT
7811559 -TTTTCT
1 TTTTTCT
7811565 TTTTTCAT
1 TTTTTC-T
7811573 TTTTTCT
1 TTTTTCT
7811580 TTTTTCT
1 TTTTTCT
7811587 TTT
1 TTT
7811590 CGTTTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 5 0.15
7 22 0.65
8 7 0.21
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:7811597 original size:15 final size:14
Alignment explanation
Indices: 7811552--7811600 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
7811542 TTTATTTTTC
7811552 TTTTTTCTTTTC--
1 TTTTTTCTTTTCTT
7811564 TTTTTTCATTTT-TT
1 TTTTTTC-TTTTCTT
7811578 CTTTTTTCTTTTCGTT
1 -TTTTTTCTTTTC-TT
7811594 TTTTTTC
1 TTTTTTC
7811601 AAGTGAAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
12 7 0.23
13 4 0.13
14 4 0.13
15 14 0.45
16 2 0.06
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (14 bp):
TTTTTTCTTTTCTT
Found at i:7812048 original size:11 final size:11
Alignment explanation
Indices: 7812029--7812101 Score: 78
Period size: 11 Copynumber: 6.5 Consensus size: 11
7812019 AGGTATTTTC
* *
7812029 TTTTATTTGGT
1 TTTTTTTTGCT
7812040 TTTTTTTTG-T
1 TTTTTTTTGCT
7812050 TTTTTTTTGCT
1 TTTTTTTTGCT
7812061 TTTTATTTT-CT
1 TTTT-TTTTGCT
*
7812072 CGTTTTTTTTACT
1 --TTTTTTTTGCT
7812085 TTTTTTTTGCT
1 TTTTTTTTGCT
7812096 TTTTTT
1 TTTTTT
7812102 GCCCCCACTG
Statistics
Matches: 55, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
10 10 0.18
11 31 0.56
12 8 0.15
13 6 0.11
ACGTcount: A:0.04, C:0.07, G:0.08, T:0.81
Consensus pattern (11 bp):
TTTTTTTTGCT
Found at i:7812053 original size:10 final size:10
Alignment explanation
Indices: 7812024--7812101 Score: 57
Period size: 10 Copynumber: 7.2 Consensus size: 10
7812014 GGTAGAGGTA
* *
7812024 TTTTCTTTTA
1 TTTTGTTTTT
*
7812034 TTTGGTTTTT
1 TTTTGTTTTT
7812044 TTTTGTTTTT
1 TTTTGTTTTT
7812054 TTTTGCTTTTTAT
1 TTTTG--TTTT-T
7812067 TTTCTCGTTTTT
1 TTT-T-GTTTTT
**
7812079 TTTACTTTTT
1 TTTTGTTTTT
7812089 TTTTGCTTTTT
1 TTTTG-TTTTT
7812100 TT
1 TT
7812102 GCCCCCACTG
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
10 29 0.54
11 7 0.13
12 8 0.15
13 8 0.15
14 1 0.02
15 1 0.02
ACGTcount: A:0.04, C:0.08, G:0.08, T:0.81
Consensus pattern (10 bp):
TTTTGTTTTT
Found at i:7813420 original size:12 final size:12
Alignment explanation
Indices: 7813397--7813447 Score: 57
Period size: 12 Copynumber: 3.9 Consensus size: 12
7813387 TCCTTTTTAT
7813397 TTTTCTTTTTTC
1 TTTTCTTTTTTC
7813409 TTTTCTTTTTTC
1 TTTTCTTTTTTC
*
7813421 ATTTTTTCATTTTTC
1 ---TTTTCTTTTTTC
7813436 TTTTCGTTTTTT
1 TTTTC-TTTTTT
7813448 TTCAAGTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
12 17 0.52
13 5 0.15
15 11 0.33
ACGTcount: A:0.04, C:0.14, G:0.02, T:0.80
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:7813446 original size:7 final size:7
Alignment explanation
Indices: 7813396--7813439 Score: 56
Period size: 7 Copynumber: 6.4 Consensus size: 7
7813386 CTCCTTTTTA
7813396 TTTTTCT
1 TTTTTCT
7813403 TTTTTC-
1 TTTTTCT
7813409 -TTTTCT
1 TTTTTCT
7813415 TTTTTCAT
1 TTTTTC-T
*
7813423 TTTTTCA
1 TTTTTCT
7813430 TTTTTCT
1 TTTTTCT
7813437 TTT
1 TTT
7813440 CGTTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 5 0.16
7 20 0.62
8 7 0.22
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTCT
Found at i:7813938 original size:11 final size:10
Alignment explanation
Indices: 7813874--7813940 Score: 55
Period size: 11 Copynumber: 6.2 Consensus size: 10
7813864 GGTAGAGGTA
7813874 TTTTC-TTTT
1 TTTTCTTTTT
*
7813883 ATTTCGTTTTT
1 TTTTC-TTTTT
*
7813894 TTTTGTTTTT
1 TTTTCTTTTT
7813904 TTTTGCTTTTT
1 TTTT-CTTTTT
7813915 ATTTTCTCGTTTT
1 -TTTTCT--TTTT
7813928 TTTTACTTTTT
1 TTTT-CTTTTT
7813939 TT
1 TT
7813941 GCCCCCACTG
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
9 4 0.09
10 9 0.19
11 20 0.43
12 8 0.17
13 6 0.13
ACGTcount: A:0.04, C:0.09, G:0.06, T:0.81
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:7818599 original size:11 final size:9
Alignment explanation
Indices: 7818572--7818632 Score: 61
Period size: 9 Copynumber: 6.6 Consensus size: 9
7818562 ATGGGTTTGC
7818572 AAAAATAAA
1 AAAAATAAA
7818581 AAAAATAAA
1 AAAAATAAA
7818590 AAAAGGATAAA
1 AAAA--ATAAA
* *
7818601 ACAAATGAA
1 AAAAATAAA
*
7818610 CAAAATAAA
1 AAAAATAAA
7818619 AAAAA-AGAA
1 AAAAATA-AA
7818628 AAAAA
1 AAAAA
7818633 AACAAAGGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
8 1 0.02
9 34 0.79
11 8 0.19
ACGTcount: A:0.82, C:0.03, G:0.07, T:0.08
Consensus pattern (9 bp):
AAAAATAAA
Found at i:7819516 original size:82 final size:82
Alignment explanation
Indices: 7819413--7819816 Score: 718
Period size: 82 Copynumber: 4.9 Consensus size: 82
7819403 TGATTTCTTC
* *
7819413 TGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
1 TGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
7819478 GATAAGATCTGTGGTTT
66 GATAAGATCTGTGGTTT
* * *
7819495 TGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGGGATCTGCTCCACTATTGCTTAGGGA
1 TGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
7819560 GATAAGATCTGTGGTTT
66 GATAAGATCTGTGGTTT
* *
7819577 TGTCCGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCCGCTCCACTATTGCTTAGGGA
1 TGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
7819642 GATAAGATCTGTGGTTT
66 GATAAGATCTGTGGTTT
*
7819659 TGTCTTCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
1 TGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
*
7819724 GATAAGATCTGTGATTT
66 GATAAGATCTGTGGTTT
*
7819741 TGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATTTGCTCCACTATTGCTTAGGGA
1 TGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
7819806 GATAAGATCTG
66 GATAAGATCTG
7819817 GTTTTCTTCA
Statistics
Matches: 310, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 310 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (82 bp):
TGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGA
GATAAGATCTGTGGTTT
Found at i:7819977 original size:46 final size:44
Alignment explanation
Indices: 7819927--7820122 Score: 123
Period size: 46 Copynumber: 4.3 Consensus size: 44
7819917 ATTTGCTTCG
7819927 CTGCCAAATACAGGAAAGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGG-AAGCAAGATCTGC-ATCTTCAATCTATTCCA
* * ** * *
7819973 CTGCCAAATACAGGGAG-ATAGAGT-TATCGGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGCA-AGA-TCT-GCATCTTCAATCTATTCCA
* * * * * * * *
7820018 CTG--TAGTCACAAGGAGGTAAAATCTGTCATCTTCGATCTGCTT-CG
1 CTGCCAAAT-AC-AGGAAGCAAGATCTG-CATCTTCAATCT-ATTCCA
*
7820063 CTGCCAAATACAGAAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAA-GCAAGATCTGC-ATCTTCAATCTATTCCA
7820109 CTGCCAAATACAGG
1 CTGCCAAATACAGG
7820123 GAGATAGAGT
Statistics
Matches: 107, Mismatches: 29, Indels: 28
0.65 0.18 0.17
Matches are distributed among these distances:
43 2 0.02
44 4 0.04
45 47 0.44
46 52 0.49
47 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (44 bp):
CTGCCAAATACAGGAAGCAAGATCTGCATCTTCAATCTATTCCA
Done.