Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 30 of 168
Found at i:7819983 original size:136 final size:136
Alignment explanation
Indices: 7819821--7820222 Score: 666
Period size: 136 Copynumber: 3.0 Consensus size: 136
7819811 GATCTGGTTT
* * *
7819821 TCTTCACTCTATTCTACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACCGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
* *
7819886 AGTCACAGGGAGGTAAAATCTGCCATTTTCGATTTGCTTCGCTGCCAAATACAGGAAAGCAAGAT
66 AGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGAT
7819951 CTGCAA
131 CTGCAA
7819957 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
* *
7820022 AGTCACAAGGAGGTAAAATCTGTCATCTTCGATCTGCTTCGCTGCCAAATACA-GAAAGGCAAGA
66 AGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAA-GCAAGA
7820086 TCTGCAA
130 TCTGCAA
* * *
7820093 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCAGCTTCAATATACTCCTCTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
* *
7820158 AGT--CAGGGAGGTAAAATCTTCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGAT
66 AGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGAT
7820221 CT
131 CT
7820223 NNNNNNNNNN
Statistics
Matches: 250, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
134 54 0.22
135 7 0.03
136 189 0.76
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (136 bp):
TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
AGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGAT
CTGCAA
Found at i:7838442 original size:16 final size:17
Alignment explanation
Indices: 7838421--7838453 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7838411 ATAAAAACAG
*
7838421 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
7838437 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
7838454 ACTTTTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:7845783 original size:16 final size:17
Alignment explanation
Indices: 7845762--7845794 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7845752 ATAAAAACAG
*
7845762 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
7845778 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
7845795 ACTTTTGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:7852070 original size:40 final size:40
Alignment explanation
Indices: 7852041--7852173 Score: 196
Period size: 40 Copynumber: 3.3 Consensus size: 40
7852031 CGATAGTTCC
* * *
7852041 TACATTTCAGTAGAATCAGTAGGTATGGCTCGATAACGCA
1 TACATTTCAGTAGATTCAGTAGGTATGGCTCAATAGCGCA
*
7852081 TACATTTCAGTCA-ATTCAGTAGGTATGGCTCAATAGTGCA
1 TACATTTCAGT-AGATTCAGTAGGTATGGCTCAATAGCGCA
* *
7852121 TACATTTCAGTAGATTCAGTGGGTATGGCTCAATAGCACA
1 TACATTTCAGTAGATTCAGTAGGTATGGCTCAATAGCGCA
7852161 TACATTTCAGTAG
1 TACATTTCAGTAG
7852174 GTAACACTCA
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 82 0.98
41 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (40 bp):
TACATTTCAGTAGATTCAGTAGGTATGGCTCAATAGCGCA
Found at i:7852297 original size:40 final size:41
Alignment explanation
Indices: 7852229--7852347 Score: 170
Period size: 40 Copynumber: 3.0 Consensus size: 41
7852219 CACTGAACTT
* *
7852229 ATTCAGTAGGTATGGCTCGATAACGCATACATTTCAGTAA-
1 ATTCAGTAGGTATGGCTCAATAGCGCATACATTTCAGTAAG
* * *
7852269 ATTTAGTAGGTATGACTCAATAGTGCATACATTTCAG-AAG
1 ATTCAGTAGGTATGGCTCAATAGCGCATACATTTCAGTAAG
*
7852309 ATTCAGTAGGTATGGCTCAATAGCGCATACGTTTCAGTA
1 ATTCAGTAGGTATGGCTCAATAGCGCATACATTTCAGTA
7852348 GGTAACACTC
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.03
40 65 0.96
41 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (41 bp):
ATTCAGTAGGTATGGCTCAATAGCGCATACATTTCAGTAAG
Found at i:7852346 original size:175 final size:175
Alignment explanation
Indices: 7852056--7852407 Score: 607
Period size: 175 Copynumber: 2.0 Consensus size: 175
7852046 TTCAGTAGAA
* *
7852056 TCAGTAGGTATGGCTCGATAACGCATACATTTCAGTCAATTCAGTAGGTATGGCTCAATAGTGCA
1 TCAGTAGGTATGGCTCGATAACGCATACATTTCAGTAAATTCAGTAGGTATGACTCAATAGTGCA
* *
7852121 TACATTTCAGTAGATTCAGTGGGTATGGCTCAATAGCACATACATTTCAGTAGGTAACACTCATT
66 TACATTTCAGAAGATTCAGTAGGTATGGCTCAATAGCACATACATTTCAGTAGGTAACACTCATT
* *
7852186 TGAGCTTCATTTAGTATATCGGTGG-ATATCGTTCACTGAACTTAT
131 TGAGCTTCATTCAGTATATCGG-GGAATACCGTTCACTGAACTTAT
*
7852231 TCAGTAGGTATGGCTCGATAACGCATACATTTCAGTAAATTTAGTAGGTATGACTCAATAGTGCA
1 TCAGTAGGTATGGCTCGATAACGCATACATTTCAGTAAATTCAGTAGGTATGACTCAATAGTGCA
* *
7852296 TACATTTCAGAAGATTCAGTAGGTATGGCTCAATAGCGCATACGTTTCAGTAGGTAACACTCATT
66 TACATTTCAGAAGATTCAGTAGGTATGGCTCAATAGCACATACATTTCAGTAGGTAACACTCATT
7852361 TGAGCTTCATTCAGTATATCGGGGAATACCGTTCACTGAACTTAT
131 TGAGCTTCATTCAGTATATCGGGGAATACCGTTCACTGAACTTAT
7852406 TC
1 TC
7852408 GATATATAAT
Statistics
Matches: 167, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
174 2 0.01
175 165 0.99
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (175 bp):
TCAGTAGGTATGGCTCGATAACGCATACATTTCAGTAAATTCAGTAGGTATGACTCAATAGTGCA
TACATTTCAGAAGATTCAGTAGGTATGGCTCAATAGCACATACATTTCAGTAGGTAACACTCATT
TGAGCTTCATTCAGTATATCGGGGAATACCGTTCACTGAACTTAT
Found at i:7857028 original size:28 final size:28
Alignment explanation
Indices: 7856988--7857044 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
7856978 ATGAAGGTGT
7856988 TTGTTGTTGCAAATGTCTAGGTGATAAA
1 TTGTTGTTGCAAATGTCTAGGTGATAAA
7857016 TTGTTGTTGCAAATGTCTAGGTGATAAA
1 TTGTTGTTGCAAATGTCTAGGTGATAAA
7857044 T
1 T
7857045 CATGCATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.40
Consensus pattern (28 bp):
TTGTTGTTGCAAATGTCTAGGTGATAAA
Found at i:7857886 original size:29 final size:29
Alignment explanation
Indices: 7857853--7857911 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
7857843 TTTGATAGTG
7857853 TGACGACTCCTGACGATTTTAAAATGTTT
1 TGACGACTCCTGACGATTTTAAAATGTTT
7857882 TGACGACTCCTGACGATTTTAAAATGTTT
1 TGACGACTCCTGACGATTTTAAAATGTTT
7857911 T
1 T
7857912 CTTTCATAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (29 bp):
TGACGACTCCTGACGATTTTAAAATGTTT
Found at i:7863891 original size:50 final size:50
Alignment explanation
Indices: 7863782--7864072 Score: 316
Period size: 50 Copynumber: 5.7 Consensus size: 50
7863772 AAAGAGATCT
* * *
7863782 CATGTAAGACCATCTCTGGGACATGGCATTGGCATCCTTGAGATCATGAGAAGTTC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATGAGAGGTCC
* * *
7863838 CATGTAAGACCATGTATGGGACATGGCACTGGCACTGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
* * * *
7863888 CATGTAAGACCATCTCTGGGACATCGCGTTGGCACCGATATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
* *
7863938 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATTAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
* * * * **
7863988 TC-CGTAAGACCATGTCTAGGACATGGCA-TGGCCACCGATATAAGAACATCC
1 -CATGTAAGACCATGTCTGGGACATGGCATTGG-CACCGAGATGAG-AGGTCC
*
7864039 CATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
7864073 TGTTATGATC
Statistics
Matches: 203, Mismatches: 27, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
49 3 0.01
50 132 0.65
51 30 0.15
52 3 0.01
53 3 0.01
55 1 0.00
56 31 0.15
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
Found at i:7866383 original size:37 final size:37
Alignment explanation
Indices: 7866320--7866395 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
7866310 TATTCCAAAA
*
7866320 TAATATTATTTTAATAGTTTAATATTAAATTAA-ATT
1 TAATATTATCTTAATAGTTTAATATTAAATTAATATT
* *
7866356 TAATAATTATCTTAATAGTATT-TTATTAATTTAATATT
1 TAAT-ATTATCTTAATAGT-TTAATATTAAATTAATATT
7866394 TA
1 TA
7866396 TCTTGATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 4 0.12
37 23 0.68
38 7 0.21
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (37 bp):
TAATATTATCTTAATAGTTTAATATTAAATTAATATT
Found at i:7866388 original size:31 final size:32
Alignment explanation
Indices: 7866343--7866423 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
7866333 ATAGTTTAAT
* **
7866343 ATTAAATTAAATTTAATAATTATCTTAAT-AGT
1 ATTATATT-AATTTAATAATTATCTTAATAAAA
* * *
7866375 ATTTTATTAATTTAATATTTATCTTGATAAAA
1 ATTATATTAATTTAATAATTATCTTAATAAAA
7866407 ATTATATTAATTTAATA
1 ATTATATTAATTTAATA
7866424 GTAAAGTGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 18 0.44
32 23 0.56
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (32 bp):
ATTATATTAATTTAATAATTATCTTAATAAAA
Found at i:7868987 original size:15 final size:15
Alignment explanation
Indices: 7868963--7868992 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7868953 AATATCGAAA
7868963 AAAGTAAAAAAAATT
1 AAAGTAAAAAAAATT
*
7868978 AAAGTGAAAAAAATT
1 AAAGTAAAAAAAATT
7868993 TGAAAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.10, T:0.20
Consensus pattern (15 bp):
AAAGTAAAAAAAATT
Found at i:7869896 original size:20 final size:20
Alignment explanation
Indices: 7869864--7869905 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
7869854 AGCAAACAAT
7869864 AAAAGAAATTGAGAGAAGAAA
1 AAAAGAAATTGAGAGAA-AAA
7869885 AAAAGAAA-TGAGAGAAAAA
1 AAAAGAAATTGAGAGAAAAA
7869904 AA
1 AA
7869906 TTGAACGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.24
20 8 0.38
21 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (20 bp):
AAAAGAAATTGAGAGAAAAA
Found at i:7871797 original size:32 final size:33
Alignment explanation
Indices: 7871742--7871815 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 33
7871732 AATTCTATAG
*** *
7871742 CTTTTAATTATGTCTTTTTTTATT-ATATGCAT
1 CTTTTAATTATGTCTTGCATTATTAATATACAT
7871774 C-TTTAATTAATGTCTTGCATTATTAATATACAT
1 CTTTTAATT-ATGTCTTGCATTATTAATATACAT
7871807 CTTTTAATT
1 CTTTTAATT
7871816 GTGACATGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
31 7 0.20
32 13 0.37
33 8 0.23
34 7 0.20
ACGTcount: A:0.27, C:0.11, G:0.05, T:0.57
Consensus pattern (33 bp):
CTTTTAATTATGTCTTGCATTATTAATATACAT
Found at i:7871967 original size:52 final size:50
Alignment explanation
Indices: 7871847--7871968 Score: 165
Period size: 50 Copynumber: 2.4 Consensus size: 50
7871837 GCATTTAATA
*
7871847 AAGTCATGCATTATA-TAACTCTCATGTTAGTTAAGTTTGCATCATAAATT
1 AAGTCATGCATTA-AGTAACTCCCATGTTAGTTAAGTTTGCATCATAAATT
* * * *
7871897 ATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAGATT
1 AAGTCATGCATTAAGTAACTCCCATGTTAGTT-AAGTTTGCATCA-TAAATT
7871949 AAGTCATGCATTAAGTAACT
1 AAGTCATGCATTAAGTAACT
7871969 GATATGTTCA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 27 0.44
51 12 0.20
52 22 0.36
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (50 bp):
AAGTCATGCATTAAGTAACTCCCATGTTAGTTAAGTTTGCATCATAAATT
Found at i:7873028 original size:15 final size:16
Alignment explanation
Indices: 7873001--7873030 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7872991 ACCTTCAATG
7873001 CTAAATCTAGACGATA
1 CTAAATCTAGACGATA
7873017 CTAAAT-TAGACGAT
1 CTAAATCTAGACGAT
7873031 CGGGACAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (16 bp):
CTAAATCTAGACGATA
Found at i:7874810 original size:3 final size:3
Alignment explanation
Indices: 7874802--7874850 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
7874792 CTAAATTCTC
7874802 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7874850 T
1 T
7874851 GGGTTAAGGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7877348 original size:21 final size:24
Alignment explanation
Indices: 7877308--7877350 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
7877298 GTTTATATAT
7877308 TCCAATAATAAATAATTAAATTTA
1 TCCAATAATAAATAATTAAATTTA
7877332 TCCAAT-ATAAA-AA-TAAATT
1 TCCAATAATAAATAATTAAATT
7877351 GATGTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 2 0.11
23 5 0.26
24 6 0.32
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (24 bp):
TCCAATAATAAATAATTAAATTTA
Found at i:7878101 original size:10 final size:10
Alignment explanation
Indices: 7878075--7878111 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
7878065 TATTAAACAT
7878075 AATATTA-TA
1 AATATTATTA
*
7878084 AATTTTATTA
1 AATATTATTA
7878094 AATATTATTA
1 AATATTATTA
7878104 AATATTAT
1 AATATTAT
7878112 AAAAATATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 6 0.24
10 19 0.76
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (10 bp):
AATATTATTA
Found at i:7878114 original size:19 final size:20
Alignment explanation
Indices: 7878075--7878136 Score: 74
Period size: 19 Copynumber: 3.1 Consensus size: 20
7878065 TATTAAACAT
* *
7878075 AATATTATAAATTTTAT-TA
1 AATATTATAAATATTATAAA
7878094 AATATTATTAAATATTATAAA
1 AATATTA-TAAATATTATAAA
*
7878115 AATATGA-AAATATTATAAA
1 AATATTATAAATATTATAAA
7878134 AAT
1 AAT
7878137 TTAGAAATGA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 22 0.58
20 9 0.24
21 7 0.18
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
AATATTATAAATATTATAAA
Found at i:7878672 original size:37 final size:36
Alignment explanation
Indices: 7878631--7878753 Score: 122
Period size: 37 Copynumber: 3.2 Consensus size: 36
7878621 AATTGTCTAC
* * *
7878631 ATTTTTGTAATTTTCTAAAATTCTTATAATACTTAAA
1 ATTTTT-TAATTTTCTAAAATTTTTATAATATTTAAT
* *
7878668 ATTTTATTATTTTTCTATAAGTTTTTTTATAATATTTAAT
1 ATTTT-TTAATTTTCTA-AA--ATTTTTATAATATTTAAT
*
7878708 ACTTTTTAATTTT-TAAAATTTTTAAATAATATTTAAT
1 ATTTTTTAATTTTCTAAAATTTTT--ATAATATTTAAT
7878745 ATTTTTTAA
1 ATTTTTTAA
7878754 AAGGCTTAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
35 5 0.07
37 36 0.51
38 5 0.07
39 7 0.10
40 18 0.25
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.59
Consensus pattern (36 bp):
ATTTTTTAATTTTCTAAAATTTTTATAATATTTAAT
Found at i:7879939 original size:50 final size:50
Alignment explanation
Indices: 7879880--7879986 Score: 160
Period size: 50 Copynumber: 2.1 Consensus size: 50
7879870 TCTCACCACT
* * * * *
7879880 AAGGCTTCCCAAATAATATGCCATATAGGCTTTTCAGGTAACTCGCTGCA
1 AAGGCTTCCCAAATAATACGCCACATAAGCTTTTCAAGTAACTCGCTACA
*
7879930 AAGGCTTCCCAAATAATACGCCACATAAGCTTTTCAAGTAACTCGCTATA
1 AAGGCTTCCCAAATAATACGCCACATAAGCTTTTCAAGTAACTCGCTACA
7879980 AAGGCTT
1 AAGGCTT
7879987 TCTAGATAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (50 bp):
AAGGCTTCCCAAATAATACGCCACATAAGCTTTTCAAGTAACTCGCTACA
Found at i:7879986 original size:25 final size:25
Alignment explanation
Indices: 7879906--7879987 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
7879896 TATGCCATAT
* *
7879906 AGGCTTTTCAGGTAACTCGCTGCAA
1 AGGCTTTTCAAGTAACTCGCTACAA
** * *
7879931 AGGCTTCCCAAATAA-TACGCCACATA
1 AGGCTTTTCAAGTAACT-CGCTACA-A
*
7879957 A-GCTTTTCAAGTAACTCGCTATAA
1 AGGCTTTTCAAGTAACTCGCTACAA
7879981 AGGCTTT
1 AGGCTTT
7879988 CTAGATAAAT
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
24 3 0.07
25 36 0.86
26 3 0.07
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (25 bp):
AGGCTTTTCAAGTAACTCGCTACAA
Found at i:7880059 original size:76 final size:76
Alignment explanation
Indices: 7879930--7880139 Score: 267
Period size: 76 Copynumber: 2.8 Consensus size: 76
7879920 ACTCGCTGCA
* * * *
7879930 AAGGCTTCCCAAATAATACGCCACATAAGCTTTTCAAGTAACTCGCTATAAAGGCTTTCTAGATA
1 AAGGCTTCCCAAATAATACACCACATAGGCTTTTCAAGTAACTCGCTACAAAGGCTTTCAAGATA
7879995 AATTCGCCACT
66 AATTCGCCACT
* ** *
7880006 AAGGCTTCCCAACTAATACACCACATAGGGGTTTCAAGTAACTTGCTACAAAGGCTTTCAAGATA
1 AAGGCTTCCCAAATAATACACCACATAGGCTTTTCAAGTAACTCGCTACAAAGGCTTTCAAGATA
** *
7880071 AATTTTCCATT
66 AATTCGCCACT
** * * * *
7880082 TTGACTTCCCAAATAATACATCACATAGGCTTTTCAGGTAACTCGCCACAAAGGCTTT
1 AAGGCTTCCCAAATAATACACCACATAGGCTTTTCAAGTAACTCGCTACAAAGGCTTT
7880140 ATTTGGTTTG
Statistics
Matches: 113, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
76 113 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (76 bp):
AAGGCTTCCCAAATAATACACCACATAGGCTTTTCAAGTAACTCGCTACAAAGGCTTTCAAGATA
AATTCGCCACT
Found at i:7885307 original size:23 final size:23
Alignment explanation
Indices: 7885281--7885342 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
7885271 GGCGTTACGA
*
7885281 AATACGCTACAAAGGCATTACAG
1 AATACGCTACAAAGGCATCACAG
*
7885304 AATATGTCATA-AAA-GCATCACAG
1 AATACG-C-TACAAAGGCATCACAG
*
7885327 AATACGCCACAAAGGC
1 AATACGCTACAAAGGC
7885343 TTTCCAGATA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
21 1 0.03
22 4 0.13
23 20 0.65
24 4 0.13
25 2 0.06
ACGTcount: A:0.45, C:0.23, G:0.16, T:0.16
Consensus pattern (23 bp):
AATACGCTACAAAGGCATCACAG
Found at i:7887470 original size:76 final size:75
Alignment explanation
Indices: 7887273--7887484 Score: 246
Period size: 75 Copynumber: 2.8 Consensus size: 75
7887263 CTCATATCTT
* * **
7887273 GCCACTAAGGCTTCCCAAATAATATGCTACATAGGCTTTTCAAGTAACTCCTTGCAAAGGCATTC
1 GCCACTAAGGCTTCCCAAATAATATGCCACATAGGCTTTTCAGGTAACTCC-CACAAAGGCATTC
*
7887338 CAAATAAATTC
65 CAAATAAATTA
* * * * * * **
7887349 TCCACTAAAGCTT-CTAAACAATATGTCACATAAGCTTTTCAGGTAACTCACCACAAAGGTTTTC
1 GCCACTAAGGCTTCCCAAATAATATGCCACATAGGCTTTTCAGGTAACTC-CCACAAAGGCATTC
* *
7887413 TAGATAAATTA
65 CAAATAAATTA
*
7887424 GCCATTAAGGCTTCCCAAATAATATGCCACATAGGCTTTTCAGGTAACTCGCCACAAAGGC
1 GCCACTAAGGCTTCCCAAATAATATGCCACATAGGCTTTTCAGGTAACTC-CCACAAAGGC
7887485 CTTATTTCGT
Statistics
Matches: 110, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
75 57 0.52
76 53 0.48
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (75 bp):
GCCACTAAGGCTTCCCAAATAATATGCCACATAGGCTTTTCAGGTAACTCCCACAAAGGCATTCC
AAATAAATTA
Found at i:7893090 original size:6 final size:7
Alignment explanation
Indices: 7893068--7893097 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
7893058 AAAGCTAACC
7893068 TTTCATT
1 TTTCATT
7893075 TTTCATT
1 TTTCATT
7893082 TTTCATT
1 TTTCATT
*
7893089 TTTCCTT
1 TTTCATT
7893096 TT
1 TT
7893098 ATTGAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTCATT
Found at i:7896832 original size:31 final size:31
Alignment explanation
Indices: 7896785--7896850 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
7896775 AAAAAACCTT
*
7896785 AATAGTCCAGTTACTTAAA-GACAAACTTTTG
1 AATAGTCCAGTGACTTAAATGA-AAACTTTTG
* *
7896816 AATAGTTCAGTGACTTAAATGAAAATTTTTG
1 AATAGTCCAGTGACTTAAATGAAAACTTTTG
7896847 AATA
1 AATA
7896851 ATTTAATGAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 29 0.94
32 2 0.06
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.35
Consensus pattern (31 bp):
AATAGTCCAGTGACTTAAATGAAAACTTTTG
Found at i:7900629 original size:16 final size:16
Alignment explanation
Indices: 7900610--7900651 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
7900600 TATTATTGTT
7900610 AAATTTTATTATTAAA
1 AAATTTTATTATTAAA
* *
7900626 AAATTATAATATTAAA
1 AAATTTTATTATTAAA
*
7900642 TAA-TTTATTA
1 AAATTTTATTA
7900652 AAATGAAAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AAATTTTATTATTAAA
Found at i:7904061 original size:22 final size:22
Alignment explanation
Indices: 7904035--7904076 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7904025 AGAATAGCAA
7904035 TTTCTCAAAGTTATGTGAAAAT
1 TTTCTCAAAGTTATGTGAAAAT
*
7904057 TTTCTCAAAGTTGTGTGAAA
1 TTTCTCAAAGTTATGTGAAA
7904077 CTTATTGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (22 bp):
TTTCTCAAAGTTATGTGAAAAT
Found at i:7905946 original size:6 final size:6
Alignment explanation
Indices: 7905935--7905963 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
7905925 TTTATAAAAA
7905935 TTATAT TTATAT TTATAT TTAT-T TTATAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT
7905964 AATTAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTATAT
Found at i:7906139 original size:5 final size:5
Alignment explanation
Indices: 7906131--7906169 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
7906121 TTTAAAAACA
*
7906131 TGTCG TGTCT TGTCG TGTCG TGTCG TGTCG TGTCAG TGT
1 TGTCG TGTCG TGTCG TGTCG TGTCG TGTCG TGTC-G TGT
7906170 TATCGATTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.03, C:0.18, G:0.36, T:0.44
Consensus pattern (5 bp):
TGTCG
Found at i:7915960 original size:20 final size:21
Alignment explanation
Indices: 7915931--7915970 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7915921 GCAAGGGCAA
7915931 GGAAAAG-AAAAAAAAGAAAG
1 GGAAAAGAAAAAAAAAGAAAG
*
7915951 GGAAAGGAAAAAAAAAGAAA
1 GGAAAAGAAAAAAAAAGAAA
7915971 ATAGAGGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (21 bp):
GGAAAAGAAAAAAAAAGAAAG
Found at i:7916996 original size:29 final size:30
Alignment explanation
Indices: 7916925--7916999 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 30
7916915 TTTAATGGAT
**
7916925 GTGACCAAAATATTAAATTTGATAACGTTA
1 GTGACCAAAATAGAAAATTTGATAACGTTA
* * *
7916955 GTAACTAAAATAGAAAATTTTA-AAC-TTGA
1 GTGACCAAAATAGAAAATTTGATAACGTT-A
7916984 GTGACCAAAATAGAAA
1 GTGACCAAAATAGAAA
7917000 CATGCTAATA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
28 2 0.05
29 18 0.49
30 17 0.46
ACGTcount: A:0.49, C:0.09, G:0.13, T:0.28
Consensus pattern (30 bp):
GTGACCAAAATAGAAAATTTGATAACGTTA
Found at i:7927348 original size:27 final size:27
Alignment explanation
Indices: 7927318--7927387 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
7927308 TTTTCATTGC
*
7927318 TAATGTGACATTATTTTTAAAAAAAAA
1 TAATGTGACATTATTTTGAAAAAAAAA
*
7927345 TAATGTGACTATT-TTTTGAAAGAAAAA
1 TAATGTGAC-ATTATTTTGAAAAAAAAA
*
7927372 TAATGTGACACTATTT
1 TAATGTGACATTATTT
7927388 CATTCTACAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.05
27 33 0.87
28 3 0.08
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (27 bp):
TAATGTGACATTATTTTGAAAAAAAAA
Found at i:7927444 original size:16 final size:17
Alignment explanation
Indices: 7927416--7927447 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7927406 AAATGATTTA
7927416 AAAATTATAAAAAAATT
1 AAAATTATAAAAAAATT
7927433 AAAATT-TAAAAAAAT
1 AAAATTATAAAAAAAT
7927448 CATTAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
AAAATTATAAAAAAATT
Found at i:7934389 original size:19 final size:21
Alignment explanation
Indices: 7934344--7934389 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
7934334 TTGATGAAAC
7934344 ATAAATTTTTTTGATTGAGATT
1 ATAAA-TTTTTTGATTGAGATT
*
7934366 -GAAATTTTTT-ATT-AGATT
1 ATAAATTTTTTGATTGAGATT
7934384 ATAAAT
1 ATAAAT
7934390 ATTTAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
18 5 0.24
19 7 0.33
20 6 0.29
21 3 0.14
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (21 bp):
ATAAATTTTTTGATTGAGATT
Found at i:7935430 original size:314 final size:311
Alignment explanation
Indices: 7934973--7935559 Score: 781
Period size: 314 Copynumber: 1.9 Consensus size: 311
7934963 AAGTCTTTGA
* * ** *
7934973 AGAACTTGAAGAAATTCTGATGAACACCATACTAGTTCTGAATAAAGTTGCCTTCTTATCCAGTT
1 AGAACTTGAAGAAATTCTGACGAACACCATACTAGTTATGAATAAAGTCACCTTCTAATCCAGTT
* * * *
7935038 CAACTGAGGAAAGGAGGTCAAAATTCGTTTCTGAAGAAAGTCACCTTTCGAGTCAGTTCAATTGT
66 CAACCGAGGAAAGGAGGTCAAAATTCGTTTATGAAAAAAGACACCTTTCGAGTCAGTTCAATTGT
* *
7935103 AGAAAGGAGGTCCAAACTCA-TTTCAAGAGCTCTATTTTATTCAAAGGTGGTCAAAATTCTACAA
131 AGAAAGGAGGTCCAAACT-AGTTTCAAGAGCCCTATTTTATTCAAAGGCGGTCAAAATTCTACAA
* * *
7935167 CAATTCTCTTTTATTCAAGTGACTAATACTATAAAACAGGGGTAGCCTCTAAGCCATTCAACACA
195 CAACTCTCTTATATTCAAGTGACTAACACTAT-AAA-AGGGGT-GCCTCTAAGCCATTCAACACA
7935232 CATTCA-CAAGTTCAGAACTCCAAATGTTCTCTAAAGAAGTATTTAAGGAAACTGG
257 CATT-ATCAAGTTCAGAACTCCAAATGTTCTCTAAAGAAGTATTTAAGGAAACTGG
* * * *
7935287 AGAACTTGAAGAAATTTTGACGAACACCGTA-TCGGTTATGAATAAAGTCACCTTCTAATCTAGT
1 AGAACTTGAAGAAATTCTGACGAACACCATACT-AGTTATGAATAAAGTCACCTTCTAATCCAGT
* *
7935351 TCAACCGAGGAAAGGAGGTCAAAATTTC-TTTATGAAAAAAGACATCTTTCGA-TCTTA-TTCAG
65 TCAACCGAGGAAAGGAGGTCAAAA-TTCGTTTATGAAAAAAGACACCTTTCGAGTC--AGTTCAA
* *
7935413 TTGTAGAAAGGAGGTCCAAACTAGTTTCAAGAGCCCTCTTTTCTTCAAAGGCGGTCAAAATTCTA
127 TTGTAGAAAGGAGGTCCAAACTAGTTTCAAGAGCCCTATTTTATTCAAAGGCGGTCAAAATTCTA
* * * * * * * *
7935478 CGAGAACTCTCTTATATTCAAGTGATTGACACTATAAAAGTGGTGCTTTTAAGCTATTCAACACA
192 CAACAACTCTCTTATATTCAAGTGACTAACACTATAAAAGGGGTGCCTCTAAGCCATTCAACACA
7935543 CATTATCAAGTTCAGAA
257 CATTATCAAGTTCAGAA
7935560 GTCTCTAAAG
Statistics
Matches: 237, Mismatches: 30, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
310 1 0.00
311 33 0.14
312 5 0.02
313 7 0.03
314 187 0.79
315 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29
Consensus pattern (311 bp):
AGAACTTGAAGAAATTCTGACGAACACCATACTAGTTATGAATAAAGTCACCTTCTAATCCAGTT
CAACCGAGGAAAGGAGGTCAAAATTCGTTTATGAAAAAAGACACCTTTCGAGTCAGTTCAATTGT
AGAAAGGAGGTCCAAACTAGTTTCAAGAGCCCTATTTTATTCAAAGGCGGTCAAAATTCTACAAC
AACTCTCTTATATTCAAGTGACTAACACTATAAAAGGGGTGCCTCTAAGCCATTCAACACACATT
ATCAAGTTCAGAACTCCAAATGTTCTCTAAAGAAGTATTTAAGGAAACTGG
Found at i:7943836 original size:5 final size:5
Alignment explanation
Indices: 7943826--7943854 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
7943816 AAGCATGTCG
7943826 AAATT AAATT AAATT AAATT AAATT AAAT
1 AAATT AAATT AAATT AAATT AAATT AAAT
7943855 GTTCACGCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:7958887 original size:17 final size:18
Alignment explanation
Indices: 7958854--7958888 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7958844 AAAGATAATT
7958854 TATTTAAAAATAATTTTA
1 TATTTAAAAATAATTTTA
*
7958872 TATTTAATAA-AATTTTA
1 TATTTAAAAATAATTTTA
7958889 AATGAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTTAAAAATAATTTTA
Found at i:7965925 original size:32 final size:32
Alignment explanation
Indices: 7965889--7965953 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
7965879 GGGTGATCTG
7965889 ATCCACTCCGATTCTCCAAATATGTTCCCCTA
1 ATCCACTCCGATTCTCCAAATATGTTCCCCTA
7965921 ATCCACTCCGATTCTCCAAATATGTTCCCCTA
1 ATCCACTCCGATTCTCCAAATATGTTCCCCTA
7965953 A
1 A
7965954 GTGATATGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.26, C:0.37, G:0.06, T:0.31
Consensus pattern (32 bp):
ATCCACTCCGATTCTCCAAATATGTTCCCCTA
Found at i:7986025 original size:15 final size:16
Alignment explanation
Indices: 7986005--7986038 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
7985995 TTCATCGTAC
7986005 TTTTATTTT-TATTAT
1 TTTTATTTTATATTAT
*
7986020 TTTTATTTTATTTTAT
1 TTTTATTTTATATTAT
7986036 TTT
1 TTT
7986039 ATTATACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTATTTTATATTAT
Found at i:7989632 original size:35 final size:36
Alignment explanation
Indices: 7989593--7989662 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 36
7989583 CATTATAATC
* * *
7989593 ACTATCACATGGTATGAA-AACATACCCATATATTT
1 ACTATCACATAGCATGAATAACATACCAATATATTT
7989628 ACTATCACATAGCATGAATAACATACCAATATATT
1 ACTATCACATAGCATGAATAACATACCAATATATT
7989663 CTCTTTCACA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
35 16 0.52
36 15 0.48
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (36 bp):
ACTATCACATAGCATGAATAACATACCAATATATTT
Found at i:8005263 original size:17 final size:18
Alignment explanation
Indices: 8005238--8005294 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
8005228 AAAATATTCC
*
8005238 AAATATATTTTAAAATTA
1 AAATATATTATAAAATTA
8005256 AAAT-TATTATAAAATTA
1 AAATATATTATAAAATTA
* *
8005273 CAAA-AAAATATAAAATATA
1 -AAATATATTATAAAAT-TA
8005292 AAA
1 AAA
8005295 AATTATTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 12 0.36
18 19 0.58
19 2 0.06
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATATATTATAAAATTA
Found at i:8005305 original size:9 final size:9
Alignment explanation
Indices: 8005293--8005353 Score: 54
Period size: 9 Copynumber: 6.6 Consensus size: 9
8005283 TAAAATATAA
8005293 AAAATTATT
1 AAAATTATT
8005302 AAAACTTATT
1 AAAA-TTATT
8005312 AAAAATT-TT
1 -AAAATTATT
8005321 AAAATATATT
1 AAAAT-TATT
8005331 AGAAATT-TT
1 A-AAATTATT
* *
8005340 AATATTTTT
1 AAAATTATT
8005349 AAAAT
1 AAAAT
8005354 CTTATAAATC
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
8 9 0.20
9 16 0.36
10 11 0.25
11 8 0.18
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (9 bp):
AAAATTATT
Found at i:8005317 original size:20 final size:19
Alignment explanation
Indices: 8005283--8005341 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
8005273 CAAAAAAATA
8005283 TAAAATATA--AAAAATTAT
1 TAAAATATATTAAAAATT-T
8005301 TAAAACT-TATTAAAAATTT
1 TAAAA-TATATTAAAAATTT
*
8005320 TAAAATATATTAGAAATTT
1 TAAAATATATTAAAAATTT
8005339 TAA
1 TAA
8005342 TATTTTTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
18 8 0.22
19 21 0.58
20 7 0.19
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (19 bp):
TAAAATATATTAAAAATTT
Found at i:8005798 original size:9 final size:8
Alignment explanation
Indices: 8005771--8005852 Score: 56
Period size: 9 Copynumber: 9.2 Consensus size: 8
8005761 AAAATATATA
*
8005771 TTAAATTT
1 TTAATTTT
*
8005779 TTACAATTT
1 TTA-ATTTT
8005788 TTAATTATT
1 TTAATT-TT
8005797 TTAATTTT
1 TTAATTTT
8005805 TAAATAATTTT
1 T---TAATTTT
*
8005816 TGTAAATATT
1 T-T-AATTTT
8005826 TTAATTTT
1 TTAATTTT
*
8005834 TAAATATTT
1 TTAAT-TTT
8005843 TTAATTTT
1 TTAATTTT
8005851 TT
1 TT
8005853 TTTCAAATTA
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
8 22 0.36
9 25 0.41
10 6 0.10
11 8 0.13
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (8 bp):
TTAATTTT
Found at i:8005805 original size:17 final size:16
Alignment explanation
Indices: 8005783--8005851 Score: 81
Period size: 16 Copynumber: 4.4 Consensus size: 16
8005773 AAATTTTTAC
*
8005783 AATTTTTAATTATTTT
1 AATTTTTAAATATTTT
*
8005799 AATTTTTAAATA-ATT
1 AATTTTTAAATATTTT
*
8005814 --TTTGTAAATATTTT
1 AATTTTTAAATATTTT
8005828 AATTTTTAAATATTTTT
1 AATTTTTAAATA-TTTT
8005845 AATTTTT
1 AATTTTT
8005852 TTTTCAAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
13 9 0.20
14 2 0.05
15 2 0.05
16 20 0.45
17 11 0.25
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (16 bp):
AATTTTTAAATATTTT
Found at i:8005829 original size:29 final size:27
Alignment explanation
Indices: 8005785--8005844 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 27
8005775 ATTTTTACAA
*
8005785 TTTTTAATTATTTTAATTTTTAAATAAT
1 TTTTTAAATATTTTAATTTTTAAAT-AT
8005813 TTTTGTAAATATTTTAATTTTTAAATAT
1 TTTT-TAAATATTTTAATTTTTAAATAT
8005841 TTTT
1 TTTT
8005845 AATTTTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 10 0.33
29 20 0.67
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTTTAAATATTTTAATTTTTAAATAT
Found at i:8007518 original size:36 final size:37
Alignment explanation
Indices: 8007392--8007721 Score: 326
Period size: 36 Copynumber: 8.9 Consensus size: 37
8007382 ATAATCAGTG
* * *
8007392 GATAATGCTCGTTTGAGCAAGCATTCAGTATAATCAATG
1 GATATTGCTCGTTTGAGC-A-CATTCAGTAGAATCAATA
* *
8007431 GATATTGCTCGTTTGAGCAACTATTTAGTAGAATCAGTA
1 GATATTGCTCGTTTGAGC-AC-ATTCAGTAGAATCAATA
8007470 GATATTGCTCGTTTGAGCACA-TCAGTAGAATCAATA
1 GATATTGCTCGTTTGAGCACATTCAGTAGAATCAATA
* * * * *
8007506 CACATTGGTCGTTTGAGCACATTTAGTAGGATCAATA
1 GATATTGCTCGTTTGAGCACATTCAGTAGAATCAATA
* * * * ** * *
8007543 GATATTGCTC-ATTAAACACTTTTTGCAGAATCAGTA
1 GATATTGCTCGTTTGAGCACATTCAGTAGAATCAATA
* *
8007579 GATATTGCTCGTTTGAGCAC-TTCAGTAGAACCACTA
1 GATATTGCTCGTTTGAGCACATTCAGTAGAATCAATA
* * *
8007615 GACATTGCTCGTTTGAGCACATTCAGTAGGATCAGTA
1 GATATTGCTCGTTTGAGCACATTCAGTAGAATCAATA
* * *
8007652 GATATTGCTCG-TTGAGCACTTTCAGTAGAATTAGTA
1 GATATTGCTCGTTTGAGCACATTCAGTAGAATCAATA
* * * *
8007688 GATATTGCTCGTTTAAGAACTTTTAGTAGAATCA
1 GATATTGCTCGTTTGAGCACATTCAGTAGAATCA
8007722 CTAGTGTCGA
Statistics
Matches: 243, Mismatches: 43, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
36 122 0.50
37 68 0.28
38 3 0.01
39 50 0.21
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (37 bp):
GATATTGCTCGTTTGAGCACATTCAGTAGAATCAATA
Found at i:8007584 original size:109 final size:109
Alignment explanation
Indices: 8007397--8007701 Score: 367
Period size: 109 Copynumber: 2.8 Consensus size: 109
8007387 CAGTGGATAA
** * * * * * *
8007397 TGCTCGTTTGAGCAAGCATTCAGTATAATCAATGGATATTGCTCGTTTGAGCAACTATTTAGTAG
1 TGCTCGTTTGAGC-A-CATTCAGTAGGATCAATAGATATTGCTC-ATTAAAC-ACT-TTCAGCAG
*
8007462 AATCAGTAGATATTGCTCGTTTGAGCACATCAGTAGAATCAATACACAT
61 AATCAGTAGATATTGCTCGTTTGAGCACATCAGTAGAACCAATACACAT
* * **
8007511 TGGTCGTTTGAGCACATTTAGTAGGATCAATAGATATTGCTCATTAAACACTTTTTGCAGAATCA
1 TGCTCGTTTGAGCACATTCAGTAGGATCAATAGATATTGCTCATTAAACACTTTCAGCAGAATCA
* * *
8007576 GTAGATATTGCTCGTTTGAGCACTTCAGTAGAACCACTAGACAT
66 GTAGATATTGCTCGTTTGAGCACATCAGTAGAACCAATACACAT
* * * * * *
8007620 TGCTCGTTTGAGCACATTCAGTAGGATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATTA
1 TGCTCGTTTGAGCACATTCAGTAGGATCAATAGATATTGCTCATTAAACACTTTCAGCAGAATCA
8007685 GTAGATATTGCTCGTTT
66 GTAGATATTGCTCGTTT
8007702 AAGAACTTTT
Statistics
Matches: 167, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
109 123 0.74
110 3 0.02
111 4 0.02
112 24 0.14
113 1 0.01
114 12 0.07
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (109 bp):
TGCTCGTTTGAGCACATTCAGTAGGATCAATAGATATTGCTCATTAAACACTTTCAGCAGAATCA
GTAGATATTGCTCGTTTGAGCACATCAGTAGAACCAATACACAT
Found at i:8007716 original size:73 final size:74
Alignment explanation
Indices: 8007379--8007721 Score: 311
Period size: 73 Copynumber: 4.6 Consensus size: 74
8007369 AAATCTTATT
* * * * * * * *
8007379 AGTATAATCAGTGGATAATGCTCGTTTGAGCAAGCATTCAGTATAATCAATGGATATTGCTCGTT
1 AGTAGAATCAGTAGATATTGCTCGTTTAAG-AA-CTTTCAGTAGAATCAGTAGATATTGCTCGTT
*
8007444 TGAGCAACTATTT
64 TGAGC-ACT-TTC
* * * * * * *
8007457 AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-ATCAGTAGAATCAATACACATTGGTCGTTTG
1 AGTAGAATCAGTAGATATTGCTCGTTTAAGAACTTTCAGTAGAATCAGTAGATATTGCTCGTTTG
8007521 AGCACATTT-
66 AGCAC-TTTC
* * * ** *
8007530 AGTAGGATCAATAGATATTGCTC-ATTAA-ACACTTTTTGCAGAATCAGTAGATATTGCTCGTTT
1 AGTAGAATCAGTAGATATTGCTCGTTTAAGA-ACTTTCAGTAGAATCAGTAGATATTGCTCGTTT
8007593 GAGCAC-TTC
65 GAGCACTTTC
* * * * * * *
8007602 AGTAGAACCACTAGACATTGCTCGTTTGAGCACATTCAGTAGGATCAGTAGATATTGCTCG-TTG
1 AGTAGAATCAGTAGATATTGCTCGTTTAAGAACTTTCAGTAGAATCAGTAGATATTGCTCGTTTG
8007666 AGCACTTTC
66 AGCACTTTC
* *
8007675 AGTAGAATTAGTAGATATTGCTCGTTTAAGAACTTTTAGTAGAATCA
1 AGTAGAATCAGTAGATATTGCTCGTTTAAGAACTTTCAGTAGAATCA
8007722 CTAGTGTCGA
Statistics
Matches: 214, Mismatches: 44, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
71 2 0.01
72 32 0.15
73 118 0.55
74 4 0.02
75 29 0.14
76 1 0.00
77 1 0.00
78 27 0.13
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (74 bp):
AGTAGAATCAGTAGATATTGCTCGTTTAAGAACTTTCAGTAGAATCAGTAGATATTGCTCGTTTG
AGCACTTTC
Found at i:8010798 original size:50 final size:50
Alignment explanation
Indices: 8010706--8010801 Score: 147
Period size: 50 Copynumber: 1.9 Consensus size: 50
8010696 GATTTGTAGC
** *
8010706 TTGTAGCTTTAATCTTTTTAACTGTGATATCGGGGAAACAAGATTCGCTA
1 TTGTAGCTTTAATCTTTTTAACTGCAATATCGAGGAAACAAGATTCGCTA
* *
8010756 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTC
1 TTGTAGCTTTAATCTTTTTAACTGCAATATCGAGGAAACAAGATTC
8010802 ACCGATGTGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (50 bp):
TTGTAGCTTTAATCTTTTTAACTGCAATATCGAGGAAACAAGATTCGCTA
Found at i:8010815 original size:50 final size:50
Alignment explanation
Indices: 8010706--8010820 Score: 142
Period size: 50 Copynumber: 2.3 Consensus size: 50
8010696 GATTTGTAGC
** * * *
8010706 TTGTAGCTTTAATCTTTTTAACTGTGATATCGGGGAAACAAGATTCGCTA
1 TTGTAGCTTTAATCTTTTTAACTGCAATATCGAGGAAACAAGATTCCCGA
* *
8010756 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGA
1 TTGTAGCTTTAATCTTTTTAACTGCAATATCGAGGAAACAAGATTC-CCGA
*
8010807 -TGTGGCTTTAATCT
1 TTGTAGCTTTAATCT
8010821 ATTCCACTGC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 54 0.96
51 2 0.04
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (50 bp):
TTGTAGCTTTAATCTTTTTAACTGCAATATCGAGGAAACAAGATTCCCGA
Found at i:8010977 original size:85 final size:84
Alignment explanation
Indices: 8010869--8011156 Score: 222
Period size: 89 Copynumber: 3.3 Consensus size: 84
8010859 TCAGTCTGCC
* * *
8010869 CCACTGTAACTTCAGGGTGATAAGACTTGTCTTCTCAGTCTGCTCCACTGCAACCTCAGGGAGAT
1 CCACTGCAACTTCAGGGAGATAAGACTT-TCTTCTCAATCTGCTCCACTGCAACCTCAGGGAGAT
* *
8010934 AAGACCTGGTGCGATCCACT
65 AAGACCTGCTGCAATCCACT
* * * * *
8010954 CTACTGCAACTTCAGAGAGATAAGATCTATTACTT-T-AATCCGCTCCACTACAACTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGA-CT-TT-CTTCTCAATCTGCTCCACTGCAACCTCAGGGAG
* * * **
8011017 ATAGGATTATCTGCTTCAATCTGCT
63 ATA--A-GACCTGCTGCAATCCACT
* * * *
8011042 CCACTGCAACGTCAGGGAGATAAGATTTATCATCTTCAATCTGC-CCTACTGCAACCTCAGGGGG
1 CCACTGCAACTTCAGGGAGATAAGACTT-TCTTC-TCAATCTGCTCC-ACTGCAACCTCAGGGAG
* * **
8011106 ATAAGACCTGCTTACTCAGTCTGCT
63 ATAAGACCTGC-T--GCAATCCACT
*
8011131 CCACTGCAACCTCAGGGAGATAAGAC
1 CCACTGCAACTTCAGGGAGATAAGAC
8011157 CTGATGGGAT
Statistics
Matches: 160, Mismatches: 29, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
85 47 0.29
86 12 0.08
87 9 0.06
88 36 0.22
89 56 0.35
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (84 bp):
CCACTGCAACTTCAGGGAGATAAGACTTTCTTCTCAATCTGCTCCACTGCAACCTCAGGGAGATA
AGACCTGCTGCAATCCACT
Found at i:8011012 original size:44 final size:44
Alignment explanation
Indices: 8010947--8011237 Score: 207
Period size: 44 Copynumber: 6.7 Consensus size: 44
8010937 ACCTGGTGCG
* * * *
8010947 ATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTA
1 ATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
* * *
8010991 ATCCGCTCCACTACAACTTCAGGGAGATAGGAT-TATCTGCTTCA
1 ATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTAT-TACTTCA
* * * *
8011035 ATCTGCTCCACTGCAACGTCAGGGAGATAAGATTTATCATCTTCA
1 ATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTATTA-CTTCA
* * * * *
8011080 ATCTGC-CCTACTGCAACCTCAGGGGGATAAGACCTGCTTAC-TCA
1 ATCCGCTCC-ACTGCAACTTCAGGGAGATAAGATCT-ATTACTTCA
* * * * * ***
8011124 GTCTGCTCCACTGCAACCTCAGGGAGATAAGA-C-CTGA-TGGG
1 ATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
* * ** *
8011165 ATCCACTCTACTGCAACTTCAGAAAGATAAGATCTATTACTTTA
1 ATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
* * * *
8011209 ATTCGCTCCACTACAATTTTAGGGAGATA
1 ATCCGCTCCACTGCAACTTCAGGGAGATA
8011238 GGATTATCGG
Statistics
Matches: 192, Mismatches: 45, Indels: 20
0.75 0.18 0.08
Matches are distributed among these distances:
41 28 0.15
42 1 0.01
43 6 0.03
44 116 0.60
45 39 0.20
46 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (44 bp):
ATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
Found at i:8011093 original size:45 final size:45
Alignment explanation
Indices: 8010863--8011155 Score: 191
Period size: 44 Copynumber: 6.7 Consensus size: 45
8010853 CTATTCTCAG
* * * * * * *
8010863 TCTGCCCCACTGTAACTTCAGGGTGATAAGACTTGTCTTC-TCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATCATCTTCAA
* * **
8010907 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGGTGCGATC--C-A
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTAT-C-ATCTTCAA
* * * *
8010952 -CT-CT--ACTGCAACTTCAGAGAGATAAGATCTATTA-CTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATCATCTTCAA
* * *
8010992 TCCGCTCCACTACAACTTCAGGGAGATAGGA-TTATC-TGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATCAT-CTTCAA
*
8011036 TCTGCTCCACTGCAACGTCAGGGAGATAAGATTTATCATCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATCATCTTCAA
* * ** * * *
8011081 TCTGC-CCTACTGCAACCTCAGGGGGATAAGACCT-GCTTAC-TCAG
1 TCTGCTCC-ACTGCAACTTCAGGGAGATAAGATTTATCAT-CTTCAA
*
8011125 TCTGCTCCACTGCAACCTCAGGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
8011156 CCTGATGGGA
Statistics
Matches: 198, Mismatches: 34, Indels: 34
0.74 0.13 0.13
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 2 0.01
41 22 0.11
42 2 0.01
43 5 0.03
44 115 0.58
45 45 0.23
46 3 0.02
47 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATCATCTTCAA
Found at i:8011201 original size:218 final size:218
Alignment explanation
Indices: 8010863--8011259 Score: 661
Period size: 218 Copynumber: 1.8 Consensus size: 218
8010853 CTATTCTCAG
* * * *
8010863 TCTGCCCCACTGTAACTTCAGGGTGATAAGACTTGTCTTCTCAGTCTGCTCCACTGCAACCTCAG
1 TCTGCCCCACTGCAACCTCAGGGGGATAAGACCTGTCTTCTCAGTCTGCTCCACTGCAACCTCAG
* *
8010928 GGAGATAAGACCTGGTGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAAT
66 GGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAAAGATAAGATCTATTACTTTAAT
* *
8010993 CCGCTCCACTACAACTTCAGGGAGATAGGATTATCTGCTTCAATCTGCTCCACTGCAACGTCAGG
131 CCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTAAATCTGCTCCACTGCAACGTCAGG
8011058 GAGATAAGATTTATCATCTTCAA
196 GAGATAAGATTTATCATCTTCAA
*
8011081 TCTGCCCTACTGCAACCTCAGGGGGATAAGACCTG-CTTACTCAGTCTGCTCCACTGCAACCTCA
1 TCTGCCCCACTGCAACCTCAGGGGGATAAGACCTGTCTT-CTCAGTCTGCTCCACTGCAACCTCA
*
8011145 GGGAGATAAGACCTGATGGGATCCACTCTACTGCAACTTCAGAAAGATAAGATCTATTACTTTAA
65 GGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAAAGATAAGATCTATTACTTTAA
* * *
8011210 TTCGCTCCACTACAATTTTAGGGAGATAGGATTATCGGCTTAAATCTGCT
130 TCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTAAATCTGCT
8011260 TCCTTACACT
Statistics
Matches: 165, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
217 3 0.02
218 162 0.98
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (218 bp):
TCTGCCCCACTGCAACCTCAGGGGGATAAGACCTGTCTTCTCAGTCTGCTCCACTGCAACCTCAG
GGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAAAGATAAGATCTATTACTTTAAT
CCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTAAATCTGCTCCACTGCAACGTCAGG
GAGATAAGATTTATCATCTTCAA
Found at i:8011368 original size:129 final size:129
Alignment explanation
Indices: 8011229--8011492 Score: 440
Period size: 129 Copynumber: 2.0 Consensus size: 129
8011219 CTACAATTTT
*
8011229 AGGGAGATA-GGATTATCGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGTCGTCTTT
1 AGGGAGATAGGGATTAT-GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGTCGTCTTC
8011293 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTAGTC
65 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTAGTC
* * * *
8011358 AGGGATATAGGGCTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAATATTCGTCGTCTTCG
1 AGGGAGATAGGGATTATGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGTCGTCTTCG
* * *
8011423 ATCTGCTCCTCTACTGCTTAGGGAGATAAGATCTGTAATTTCCCAACCTATTCCACTGCTGGTC
66 ATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTAGTC
8011487 AGGGAG
1 AGGGAG
8011493 CTAGATTTTA
Statistics
Matches: 125, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
129 120 0.96
130 5 0.04
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (129 bp):
AGGGAGATAGGGATTATGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGTCGTCTTCG
ATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTAGTC
Found at i:8012788 original size:13 final size:13
Alignment explanation
Indices: 8012767--8012796 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8012757 TTTCATCATT
*
8012767 TTTTTATTTTTCA
1 TTTTCATTTTTCA
8012780 TTTTCATTTTTCA
1 TTTTCATTTTTCA
8012793 TTTT
1 TTTT
8012797 TTTGACTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:8013673 original size:6 final size:6
Alignment explanation
Indices: 8013664--8013733 Score: 63
Period size: 6 Copynumber: 11.8 Consensus size: 6
8013654 TTTCTCTTTT
* * * **
8013664 TTTTCA TTTTCA TTTTGA CTTTGA TTTTGA TTTTGA TTTTTC TTCTT--
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TT-TTGA
*
8013711 TTTTGT TTTTGA TTTTGA TTTTG
1 TTTTGA TTTTGA TTTTGA TTTTG
8013734 CCTTTTTTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
4 2 0.04
5 2 0.04
6 49 0.89
7 2 0.04
ACGTcount: A:0.11, C:0.07, G:0.11, T:0.70
Consensus pattern (6 bp):
TTTTGA
Found at i:8013741 original size:29 final size:29
Alignment explanation
Indices: 8013683--8013744 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 29
8013673 TCATTTTGAC
*
8013683 TTTGATTTTGATTTTGATTTTTCTTCTTT
1 TTTGATTTTGATTTTGATTTTCCTTCTTT
*
8013712 TTTGTTTTTGATTTTGATTTTGCCTT-TTT
1 TTTGATTTTGATTTTGATTTT-CCTTCTTT
8013741 TTTG
1 TTTG
8013745 GATTGGATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.08, C:0.06, G:0.13, T:0.73
Consensus pattern (29 bp):
TTTGATTTTGATTTTGATTTTCCTTCTTT
Found at i:8019926 original size:36 final size:37
Alignment explanation
Indices: 8019851--8019994 Score: 170
Period size: 37 Copynumber: 4.0 Consensus size: 37
8019841 CCATTACAAC
* * * *
8019851 TAGACATTGCTTGTTTAAACA-TATTTAGTAGGATCAG
1 TAGATATTGCTTGTTTAAGCACT-TTCAGTAGAATCAG
* *
8019888 TAGATATTGCTTG-TTAAGCTCTTTCAGTAGAATAAG
1 TAGATATTGCTTGTTTAAGCACTTTCAGTAGAATCAG
* *
8019924 TAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAG
1 TAGATATTGCTTGTTTAAGCACTTTCAGTAGAATCAG
*
8019961 TAGATATTGCTTG-TTGAGCAC-TTCAGTAGAATCA
1 TAGATATTGCTTGTTTAAGCACTTTCAGTAGAATCA
8019995 TTATTCCTTT
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
35 13 0.14
36 36 0.38
37 45 0.48
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (37 bp):
TAGATATTGCTTGTTTAAGCACTTTCAGTAGAATCAG
Found at i:8020777 original size:16 final size:16
Alignment explanation
Indices: 8020756--8020786 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8020746 TAATCCCCAG
8020756 GTTTGGCCGAAGCTTA
1 GTTTGGCCGAAGCTTA
8020772 GTTTGGCCGAAGCTT
1 GTTTGGCCGAAGCTT
8020787 GTTCTTCTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.19, G:0.32, T:0.32
Consensus pattern (16 bp):
GTTTGGCCGAAGCTTA
Found at i:8021448 original size:22 final size:22
Alignment explanation
Indices: 8021423--8021465 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
8021413 GATATGGAGT
*
8021423 ATATCAGATACAGATGCAAAAC
1 ATATCAAATACAGATGCAAAAC
8021445 ATATCAAATACAGATGCAAAA
1 ATATCAAATACAGATGCAAAA
8021466 TCCTACCCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.16, G:0.12, T:0.19
Consensus pattern (22 bp):
ATATCAAATACAGATGCAAAAC
Found at i:8025962 original size:4 final size:4
Alignment explanation
Indices: 8025953--8025998 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
8025943 CTATATACAT
8025953 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
8025999 GTATCTTTCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:8027652 original size:28 final size:28
Alignment explanation
Indices: 8027620--8027676 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
8027610 CCCCTGAACC
8027620 GAACTCGATCTGTATGAGCCTATAATGG
1 GAACTCGATCTGTATGAGCCTATAATGG
8027648 GAACTCGATCTGTATGAGCCTATAATGG
1 GAACTCGATCTGTATGAGCCTATAATGG
8027676 G
1 G
8027677 TGAAGACCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (28 bp):
GAACTCGATCTGTATGAGCCTATAATGG
Found at i:8030599 original size:7 final size:6
Alignment explanation
Indices: 8030563--8030626 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
8030553 AGATCCAATC
* * *
8030563 CAAAAA -AAAAA TCAAAAT CAAAAA CAAAAA CAAAAA -AAGAA GAAAAA
1 CAAAAA CAAAAA -CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA
* *
8030610 GAAAAA GAAAAA TCAAA
1 CAAAAA CAAAAA -CAAA
8030627 GTCAAAATGA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
5 9 0.18
6 33 0.67
7 7 0.14
ACGTcount: A:0.80, C:0.09, G:0.06, T:0.05
Consensus pattern (6 bp):
CAAAAA
Found at i:8031541 original size:7 final size:7
Alignment explanation
Indices: 8031529--8031564 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
8031519 AAAGAGTGTG
8031529 TGAAAAA
1 TGAAAAA
8031536 TGAAAAA
1 TGAAAAA
8031543 TG-AAAA
1 TGAAAAA
8031549 TGAAAAA
1 TGAAAAA
8031556 T-AAAAA
1 TGAAAAA
8031562 TGA
1 TGA
8031565 TGAAAAGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 12 0.44
7 15 0.56
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (7 bp):
TGAAAAA
Found at i:8031548 original size:13 final size:13
Alignment explanation
Indices: 8031531--8031564 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
8031521 AGAGTGTGTG
8031531 AAAAATGAAAAAT
1 AAAAATGAAAAAT
*
8031544 GAAAATGAAAAAT
1 AAAAATGAAAAAT
8031557 AAAAATGA
1 AAAAATGA
8031565 TGAAAAGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.15
Consensus pattern (13 bp):
AAAAATGAAAAAT
Found at i:8033062 original size:129 final size:128
Alignment explanation
Indices: 8032829--8033187 Score: 547
Period size: 129 Copynumber: 2.8 Consensus size: 128
8032819 GTGAATATAG
* ** *
8032829 CAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTCAAATGTA
1 CAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGA-GGTGAATCTTATCTTCAAGTGTA
* * * *
8032894 AGGAAACAGATTTATGCCACAAGTCCTATATCCCTGGTCAGCAGCGGAATAGGTTGGGAAATTA
65 AGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGCGGAATAGGTTAGAAAATTA
* * *
8032958 CATATCTTGTCTCCTTAAGTAGTAGCGGAGCAGATCGAAGATGGTGAATCTTATCTTCAAGTGTA
1 CAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGA-GGTGAATCTTATCTTCAAGTGTA
*
8033023 AGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAGAAAATTA
65 AGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGCGGAATAGGTTAGAAAATTA
* *
8033087 CAGACCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGTCGAATCTTATCTTCAAGTGTA
1 CAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAGGT-GAATCTTATCTTCAAGTGTA
* *
8033152 AGGAAGCAGATTTAAGCCACAAATCCTATCTCCCTG
65 AGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTG
8033188 AAGTTGTAGT
Statistics
Matches: 209, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
128 2 0.01
129 207 0.99
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.26
Consensus pattern (128 bp):
CAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAGGTGAATCTTATCTTCAAGTGTAA
GGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGCGGAATAGGTTAGAAAATTA
Found at i:8033309 original size:44 final size:42
Alignment explanation
Indices: 8033256--8033769 Score: 198
Period size: 44 Copynumber: 11.8 Consensus size: 42
8033246 TGGATCGCAT
* *
8033256 CAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAG-AAG
* * *
8033300 CAGGTCTTATCCCCCTGAAGTTGCAGTGGAACAGATCGAAGATGG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-G-AGA-AG
** * *
8033345 CAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGAT-TGAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAGAAG
** * * * *
8033386 CCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTA-AAG
1 -C-A-GGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAGAAG
* * * * * ** * * *
8033430 TAATAGATCTTATCTCTCTGAAGTTACAGTAGAGTGGAT-CGCAT
1 ---CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAGAAG
* * *
8033474 CAGGTCTTATCTCCCTGAGGTTGCAGCGGAGTAGACTGAGTAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAG-AAG
* * *
8033518 CAGGTCTTATCCCCCTGAAGTTGTAATGG-GACAGATCGAAGAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAG-CAGAT-G-AGAAG
** * * * *
8033562 CAAATCTTATCTCTCTGAGGTTGCAGTGGAACAGAT-TGAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAGAAG
** * * * * * *
8033603 CCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATAA
1 -C-A-GGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAGA-AG
* * * * ** * * *
8033650 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGAT-CGCAT
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAGAAG
* ** *
8033691 CAAGTCTTATCTCCCTG-AGTTTATAGCGGAGCAGACTGAGAAAG
1 CAGGTCTTATCTCCCTGAAG-TTGCAGTGGAGCAGA-TGAG-AAG
* * *
8033735 CAAGTCTTAT-TCCCCTAAAGTTGCAATGGAGCAGA
1 CAGGTCTTATCT-CCCTGAAGTTGCAGTGGAGCAGA
8033770 CTAAGAATAA
Statistics
Matches: 348, Mismatches: 93, Indels: 58
0.70 0.19 0.12
Matches are distributed among these distances:
40 2 0.01
41 55 0.16
42 6 0.02
43 9 0.03
44 233 0.67
45 41 0.12
46 1 0.00
47 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (42 bp):
CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAGAAG
Found at i:8033679 original size:217 final size:218
Alignment explanation
Indices: 8033173--8033769 Score: 1016
Period size: 217 Copynumber: 2.7 Consensus size: 218
8033163 TTAAGCCACA
8033173 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
*
8033238 CACTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAG
66 CAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAG
* *
8033303 GTCTTATCCCCCTGAAGTTGCAGTGGAACAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTG
131 GTCTTATCCCCCTGAAGTTGCAATGGAACAGATCGAAGATAGCAAATCTTATCTCCCTGAGGTTG
*
8033368 CAGTGGAGCAGATTGAAGCCGAT
196 CAGTGGAACAGATTGAAGCCGAT
*
8033391 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTA
1 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
*
8033456 CAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGTAGACTGAGTAAGCAG
66 CAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAG
* * *
8033521 GTCTTATCCCCCTGAAGTTGTAATGGGACAGATCGAAGA-AGCAAATCTTATCTCTCTGAGGTTG
131 GTCTTATCCCCCTGAAGTTGCAATGGAACAGATCGAAGATAGCAAATCTTATCTCCCTGAGGTTG
8033585 CAGTGGAACAGATTGAAGCCGAT
196 CAGTGGAACAGATTGAAGCCGAT
*
8033608 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
* * ** * *
8033673 CAGTAGAGTGGATCGCATCAAGTCTTATCTCCCTGAGTTTATAGCGGAGCAGACTGAGAAAGCAA
66 CAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAG
* * *
8033738 GTCTTATTCCCCTAAAGTTGCAATGGAGCAGA
131 GTCTTATCCCCCTGAAGTTGCAATGGAACAGA
8033770 CTAAGAATAA
Statistics
Matches: 356, Mismatches: 23, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
217 193 0.54
218 163 0.46
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (218 bp):
AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
CAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAG
GTCTTATCCCCCTGAAGTTGCAATGGAACAGATCGAAGATAGCAAATCTTATCTCCCTGAGGTTG
CAGTGGAACAGATTGAAGCCGAT
Found at i:8034537 original size:27 final size:28
Alignment explanation
Indices: 8034495--8034549 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
8034485 CCCAAAATCT
8034495 AACCCAATTAACCTAGCCCAATATAAAC
1 AACCCAATTAACCTAGCCCAATATAAAC
* * *
8034523 AACCC-ATTAATCTAGCCCGATCTAAAC
1 AACCCAATTAACCTAGCCCAATATAAAC
8034550 CCGATTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.42, C:0.33, G:0.05, T:0.20
Consensus pattern (28 bp):
AACCCAATTAACCTAGCCCAATATAAAC
Found at i:8034938 original size:6 final size:6
Alignment explanation
Indices: 8034929--8034955 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
8034919 TTTTATTTTC
8034929 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
8034956 TGTTTGTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:8035766 original size:3 final size:3
Alignment explanation
Indices: 8035752--8035788 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
8035742 GTATTAGCAT
*
8035752 TTA TTA TCA TTA TTA TTA TTA TTAA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA
8035789 GTTNNNNNNN
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:8038810 original size:29 final size:29
Alignment explanation
Indices: 8038777--8038840 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
8038767 TAATCCACCA
8038777 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
8038806 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
8038836 CCCAA
1 CCCAA
8038841 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:8038814 original size:30 final size:30
Alignment explanation
Indices: 8038784--8038840 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8038774 CCACCCAACT
8038784 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
8038813 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
8038841 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:8039661 original size:4 final size:4
Alignment explanation
Indices: 8039652--8039712 Score: 113
Period size: 4 Copynumber: 15.2 Consensus size: 4
8039642 ATCGGGCTGT
*
8039652 TACA TACA TACA TACA GACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
8039700 TACA TACA TACA T
1 TACA TACA TACA T
8039713 GTATCTTTCA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 55 1.00
ACGTcount: A:0.49, C:0.25, G:0.02, T:0.25
Consensus pattern (4 bp):
TACA
Found at i:8047785 original size:23 final size:23
Alignment explanation
Indices: 8047708--8047796 Score: 84
Period size: 23 Copynumber: 4.1 Consensus size: 23
8047698 TAAGTAAGTT
8047708 TAATCACTACAATGTTTTCTAGC
1 TAATCACTACAATGTTTTCTAGC
* * * *
8047731 TAAACAATA-TA-GTTTACCTA-C
1 TAATCACTACAATGTTT-TCTAGC
8047752 -AA--A-TACAATGTTTTCTAGC
1 TAATCACTACAATGTTTTCTAGC
8047771 TAATCACTACAATGTTTTCTAGC
1 TAATCACTACAATGTTTTCTAGC
8047794 TAA
1 TAA
8047797 ACCATTTTCA
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
17 2 0.04
18 5 0.10
19 5 0.10
20 4 0.08
21 5 0.10
22 5 0.10
23 26 0.50
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.37
Consensus pattern (23 bp):
TAATCACTACAATGTTTTCTAGC
Found at i:8048182 original size:22 final size:22
Alignment explanation
Indices: 8048150--8048192 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8048140 AATACTGAGT
* *
8048150 ATATCAGATACAGATGCAGAAC
1 ATATCAAATACAAATGCAGAAC
8048172 ATATCAAATACAAATGCAGAA
1 ATATCAAATACAAATGCAGAA
8048193 TGCTACCCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.51, C:0.16, G:0.14, T:0.19
Consensus pattern (22 bp):
ATATCAAATACAAATGCAGAAC
Found at i:8053222 original size:17 final size:18
Alignment explanation
Indices: 8053187--8053223 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
8053177 ATATAGTTAA
8053187 TAAAACTATAATTTGTGT
1 TAAAACTATAATTTGTGT
8053205 TAAAA-TATAAATTT-TGT
1 TAAAACTAT-AATTTGTGT
8053222 TA
1 TA
8053224 TGTACCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (18 bp):
TAAAACTATAATTTGTGT
Found at i:8054148 original size:19 final size:20
Alignment explanation
Indices: 8054102--8054148 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
8054092 AATAAAATTC
8054102 AATTAAATTTGAAAATTTTG
1 AATTAAATTTGAAAATTTTG
* *
8054122 -ATGAAAATTT-TAAATTTTG
1 AAT-TAAATTTGAAAATTTTG
8054141 AATTAAAT
1 AATTAAAT
8054149 AGTTCGCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 5
0.73 0.10 0.17
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.45
Consensus pattern (20 bp):
AATTAAATTTGAAAATTTTG
Found at i:8056815 original size:44 final size:47
Alignment explanation
Indices: 8056763--8056872 Score: 136
Period size: 49 Copynumber: 2.4 Consensus size: 47
8056753 TCCATATAGA
* *
8056763 ACTACACTTCTTTTATTT-TATT-TTAGAATAAGGT-TTTCATCCTT
1 ACTACACTTCTTCTATTTATATTATTAGAATAAGGTGTTTCAACCTT
* *
8056807 ATTACACTTCATCTATTTGATATTGATTAGAATAAGGTGTTTCAACCTT
1 ACTACACTTCTTCTATTT-ATATT-ATTAGAATAAGGTGTTTCAACCTT
*
8056856 ACTACACTCCTTCTATT
1 ACTACACTTCTTCTATT
8056873 AGAATATGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
44 15 0.28
46 4 0.07
48 12 0.22
49 23 0.43
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.46
Consensus pattern (47 bp):
ACTACACTTCTTCTATTTATATTATTAGAATAAGGTGTTTCAACCTT
Found at i:8056883 original size:49 final size:48
Alignment explanation
Indices: 8056785--8056883 Score: 128
Period size: 49 Copynumber: 2.0 Consensus size: 48
8056775 TTATTTTATT
* * * *
8056785 TTAGAATAAGGTTTTCATCCTTATTACACTTCATCTATTTGATATTGA
1 TTAGAATAAGGTTTTCAACCTTACTACACTCCATCTATTAGATATTGA
*
8056833 TTAGAATAAGGTGTTTCAACCTTACTACACTCCTTCTATTAGA-ATATGA
1 TTAGAATAAGGT-TTTCAACCTTACTACACTCCATCTATTAGATAT-TGA
8056882 TT
1 TT
8056884 TTTCAAGCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
48 14 0.32
49 30 0.68
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.42
Consensus pattern (48 bp):
TTAGAATAAGGTTTTCAACCTTACTACACTCCATCTATTAGATATTGA
Found at i:8061054 original size:68 final size:68
Alignment explanation
Indices: 8060975--8061111 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
8060965 TGACTAAGTC
8060975 ACTTCCCATAACCAAGTTTGAGCATTGCTTAGACTTGGTTGGTGTTCATTGTTGAAAAATACCCC
1 ACTTCCCATAACCAAGTTTGAGCATTGCTTAGACTTGGTTGGTGTTCATTGTTGAAAAATACCCC
8061040 TTA
66 TTA
8061043 ACTTCCCATAACCAAGTTTGAGCATTGCTTAGACTTGGTTGGTGTTCATTGTTGAAAAATACCCC
1 ACTTCCCATAACCAAGTTTGAGCATTGCTTAGACTTGGTTGGTGTTCATTGTTGAAAAATACCCC
8061108 TTA
66 TTA
8061111 A
1 A
8061112 AGGGGTACAC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (68 bp):
ACTTCCCATAACCAAGTTTGAGCATTGCTTAGACTTGGTTGGTGTTCATTGTTGAAAAATACCCC
TTA
Found at i:8065068 original size:149 final size:149
Alignment explanation
Indices: 8064798--8065095 Score: 578
Period size: 149 Copynumber: 2.0 Consensus size: 149
8064788 TCCTTCTACC
8064798 ATAAAATTCTCCATCCATGGAGGTCTCCTCTTGTTACGTTAAGGACGATCAATTTGTTGGTTCAG
1 ATAAAATTCTCCATCCATGGAGGTCTCCTCTTGTTACGTTAAGGACGATCAATTTGTTGGTTCAG
8064863 CTACTTGTTGCTCATTTTGCACTCGCTCTATTGGATGTTGCCTTTCATCTTCATTTTCACCATCA
66 CTACTTGTTGCTCATTTTGCACTCGCTCTATTGGATGTTGCCTTTCATCTTCATTTTCACCATCA
*
8064928 ACGTTAGCTTGTATTTATT
131 AAGTTAGCTTGTATTTATT
*
8064947 ATAAAATTCTCGATCCATGGAGGTCTCCTCTTGTTACGTTAAGGACGATCAATTTGTTGGTTCAG
1 ATAAAATTCTCCATCCATGGAGGTCTCCTCTTGTTACGTTAAGGACGATCAATTTGTTGGTTCAG
8065012 CTACTTGTTGCTCATTTTGCACTCGCTCTATTGGATGTTGCCTTTCATCTTCATTTTCACCATCA
66 CTACTTGTTGCTCATTTTGCACTCGCTCTATTGGATGTTGCCTTTCATCTTCATTTTCACCATCA
8065077 AAGTTAGCTTGTATTTATT
131 AAGTTAGCTTGTATTTATT
8065096 GTTCACCGTT
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 147 1.00
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.42
Consensus pattern (149 bp):
ATAAAATTCTCCATCCATGGAGGTCTCCTCTTGTTACGTTAAGGACGATCAATTTGTTGGTTCAG
CTACTTGTTGCTCATTTTGCACTCGCTCTATTGGATGTTGCCTTTCATCTTCATTTTCACCATCA
AAGTTAGCTTGTATTTATT
Found at i:8072935 original size:12 final size:12
Alignment explanation
Indices: 8072918--8072944 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8072908 CTATTAGTAA
8072918 TTTTTTAAATAT
1 TTTTTTAAATAT
8072930 TTTTTTAAATAT
1 TTTTTTAAATAT
8072942 TTT
1 TTT
8072945 ACTATACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTTTAAATAT
Found at i:8074422 original size:24 final size:23
Alignment explanation
Indices: 8074377--8074431 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
8074367 TTAAATTTTT
*
8074377 ATAAAAAATTAAAGTATTTATAA
1 ATAAAAAATTAAAGTATATATAA
8074400 ATAAAATAATTAAAAGT-TATAT-A
1 ATAAAA-AATT-AAAGTATATATAA
*
8074423 TTAAAAAAT
1 ATAAAAAAT
8074432 AACAAGTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 3 0.11
23 12 0.43
24 8 0.29
25 5 0.18
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (23 bp):
ATAAAAAATTAAAGTATATATAA
Found at i:8074651 original size:9 final size:9
Alignment explanation
Indices: 8074637--8074667 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8074627 GTTAAACGAA
8074637 TCGAGTTAT
1 TCGAGTTAT
*
8074646 TCGAGTTAA
1 TCGAGTTAT
8074655 TCGAGTTAT
1 TCGAGTTAT
8074664 TCGA
1 TCGA
8074668 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:8076680 original size:17 final size:17
Alignment explanation
Indices: 8076649--8076682 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8076639 ATTACAAAAT
*
8076649 CAAATCTTATCAGATTA
1 CAAATCTTATAAGATTA
*
8076666 CAAATCTTCTAAGATTA
1 CAAATCTTATAAGATTA
8076683 TTTTCCATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (17 bp):
CAAATCTTATAAGATTA
Found at i:8079158 original size:38 final size:36
Alignment explanation
Indices: 8079051--8079165 Score: 99
Period size: 38 Copynumber: 3.1 Consensus size: 36
8079041 TAATTATTAT
* *
8079051 AAATATAAAAAAATT-TAAAAATTAGAACAATATATA
1 AAATACAAAAAAATTATAAAAATTATAA-AATATATA
* * *
8079087 TAAT-CACAAAAATTATAAAAAAAATTATGAAATATATA
1 AAATACAAAAAAATTAT---AAAAATTATAAAATATATA
*
8079125 GAAATACAAAAAAATTATAAAATTTTATAAAATAGTATA
1 -AAATACAAAAAAATTATAAAA-ATTATAAAATA-TATA
8079164 AA
1 AA
8079166 TTTATAAAGA
Statistics
Matches: 62, Mismatches: 9, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
35 8 0.13
36 4 0.06
37 4 0.06
38 19 0.31
39 16 0.26
40 11 0.18
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.29
Consensus pattern (36 bp):
AAATACAAAAAAATTATAAAAATTATAAAATATATA
Found at i:8079193 original size:29 final size:29
Alignment explanation
Indices: 8079138--8079207 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
8079128 ATACAAAAAA
* *
8079138 ATTATAAAATTTTATAAAATAGTATAAAT
1 ATTATAAAATTGTAAAAAATAGTATAAAT
*
8079167 -TTATAAAGATTGTAAAAAATATTATAAAT
1 ATTATAAA-ATTGTAAAAAATAGTATAAAT
8079196 AATTATAAAATT
1 -ATTATAAAATT
8079208 AGGTAGATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 7 0.20
29 18 0.51
30 3 0.09
31 7 0.20
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (29 bp):
ATTATAAAATTGTAAAAAATAGTATAAAT
Found at i:8080753 original size:3 final size:3
Alignment explanation
Indices: 8080747--8080780 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
8080737 AATAATAATA
*
8080747 ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
8080781 AATGTTATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:8085404 original size:1 final size:1
Alignment explanation
Indices: 8085398--8085473 Score: 62
Period size: 1 Copynumber: 76.0 Consensus size: 1
8085388 GTTCAGATTC
* * * * ** * **
8085398 AAAAAAAAAAAACAAAAAAACAAAAAAACAAAAAAAGAAAAAAAACCAAAATAAAAAAAATCAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
8085463 AATAAAAAAAA
1 AAAAAAAAAAA
8085474 TCAATCAATC
Statistics
Matches: 58, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 58 1.00
ACGTcount: A:0.87, C:0.08, G:0.01, T:0.04
Consensus pattern (1 bp):
A
Found at i:8085414 original size:8 final size:8
Alignment explanation
Indices: 8085398--8085473 Score: 77
Period size: 8 Copynumber: 9.5 Consensus size: 8
8085388 GTTCAGATTC
8085398 AAAAA-AA
1 AAAAACAA
8085405 AAAAACAA
1 AAAAACAA
8085413 AAAAACAA
1 AAAAACAA
8085421 AAAAACAA
1 AAAAACAA
*
8085429 AAAAAGAAA
1 AAAAA-CAA
8085438 AAAAACCAA
1 AAAAA-CAA
*
8085447 AATAA-AA
1 AAAAACAA
*
8085454 AAAATCAA
1 AAAAACAA
8085462 AAATAA-AA
1 AAA-AACAA
8085470 AAAA
1 AAAA
8085474 TCAATCAATC
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
7 11 0.19
8 33 0.57
9 14 0.24
ACGTcount: A:0.87, C:0.08, G:0.01, T:0.04
Consensus pattern (8 bp):
AAAAACAA
Found at i:8085477 original size:16 final size:15
Alignment explanation
Indices: 8085398--8085473 Score: 89
Period size: 16 Copynumber: 4.7 Consensus size: 15
8085388 GTTCAGATTC
8085398 AAAAAAAAAAAACAA
1 AAAAAAAAAAAACAA
8085413 AAAAACAAAAAAACAAA
1 AAAAA-AAAAAAAC-AA
8085430 AAAAGAAAAAAAACCAA
1 AAAA-AAAAAAAA-CAA
* *
8085447 AATAAAAAAAATCAA
1 AAAAAAAAAAAACAA
8085462 AAATAAAAAAAA
1 AAA-AAAAAAAA
8085474 TCAATCAATC
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
15 10 0.19
16 23 0.43
17 18 0.34
18 2 0.04
ACGTcount: A:0.87, C:0.08, G:0.01, T:0.04
Consensus pattern (15 bp):
AAAAAAAAAAAACAA
Found at i:8085514 original size:6 final size:6
Alignment explanation
Indices: 8085503--8085539 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
8085493 CAAAAATAGG
8085503 AGAAAA AGAAAAA AGAAAAA AGAAAA AGAAAA AGAAA
1 AGAAAA AG-AAAA AG-AAAA AGAAAA AGAAAA AGAAA
8085540 TGAGAGGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 17 0.57
7 13 0.43
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:8085517 original size:7 final size:7
Alignment explanation
Indices: 8085505--8085539 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
8085495 AAAATAGGAG
8085505 AAAAAGA
1 AAAAAGA
8085512 AAAAAGA
1 AAAAAGA
8085519 AAAAAG-
1 AAAAAGA
8085525 AAAAAG-
1 AAAAAGA
8085531 AAAAAGA
1 AAAAAGA
8085538 AA
1 AA
8085540 TGAGAGGTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.44
7 15 0.56
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:8085521 original size:13 final size:13
Alignment explanation
Indices: 8085503--8085539 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
8085493 CAAAAATAGG
8085503 AGAAAAAGAAAAA
1 AGAAAAAGAAAAA
8085516 AGAAAAA-AGAAAA
1 AGAAAAAGA-AAAA
8085529 AGAAAAAGAAA
1 AGAAAAAGAAA
8085540 TGAGAGGTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 1 0.05
13 20 0.91
14 1 0.05
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AGAAAAAGAAAAA
Found at i:8087849 original size:175 final size:175
Alignment explanation
Indices: 8087563--8090080 Score: 3606
Period size: 175 Copynumber: 14.4 Consensus size: 175
8087553 TTGCAGATCT
8087563 TATCTCCCTGAGATTACAGTGGAGCGGATT---A--AATGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
**
8087623 GAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
* ** * *
8087688 TTATCTCCCTGAGATTACAGCAGAGCAGATCAAAGATGGTAATCC
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
* *
8087733 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTTTCTGAAGTTACAGCA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
** *
8087798 GAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
** * * *
8087863 TTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAGTCC
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
*
8087908 TATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAAGT
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTAC-AGT
**
8087973 AGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGAT
65 AGAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGAT
* ** * *
8088038 ATTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCC
130 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
* *
8088084 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTTTCTGAAGTTACAGCA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
** *
8088149 GAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
** * * *
8088214 TTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAGTCC
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
* *
8088259 TATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTAAAGTTACAAGT
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTAC-AGT
**
8088324 AGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGAT
65 AGAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGAT
* ** * *
8088389 ATTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCC
130 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
8088435 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
**
8088500 GAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
*
8088565 TTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCC
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
* * * * * *
8088610 TATCTCCCTAATATTACAATGAAGCGGATTAAAACCAAGGATCTTATCTATCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
* *
8088675 GAGTAGATCGCACCAGGTCTTATTTCCCTAAGATTACAGTGGAACAAACCGAAGAATTTCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
*
8088740 TTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCC
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
*
8088785 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
*
8088850 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTTAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
* *
8088915 TTATCTCCTTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCC
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
* *
8088960 TATCTCCCTGAGATTACAGTGGAGTGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
*
8089025 GAATAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
* * * *
8089090 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-AGATCT
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA-ATCC
* * * * * * *
8089135 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAGA-CACT-ATCCTATCTCCCTGAAGTTATAGT
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAA-ACCAATGATCTTATCTCTCTGAAGTTACAGT
* * ** * * ** * * * ** ** * **
8089198 GGCGCGGATTGAAATAAAAGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCATCATATT
65 AGAGTAGATCG---CACCAGGTCTTATTTCCCTGAGA-TTACAGTGGAACAGACCG-AAGA-ATT
*
8089262 GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
124 ----TCAG--ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
*
8089320 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
*
8089385 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
** * * *
8089450 TTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAGTCC
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
8089495 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
* *
8089560 GAGTAGATCGCACCAGGTCTTATTTCCCTGAAATTACAGTGGAACAAACCGAAGAATTTCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
* * *
8089625 TTATCTCCTTGAGATTACAGTGGAGCAAATTGAAGCTAGTAATCC
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
* * *
8089670 TATCTCCCTGAGATTACAGTGGAGTGGATTAAAAACCAAGGATCTTATCGCTCTGAAGTTACAGT
1 TATCTCCCTGAGATTACAGTGGAGCGGATT-AAAACCAATGATCTTATCTCTCTGAAGTTACAGT
*
8089735 AGAGTAGATCGCACCAGGTCTTATTTCCCTGATATTACAGTGGAACAGACCGAAGAATTTCAGAT
65 AGAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGAT
* *
8089800 CTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGTAATCC
130 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
*
8089846 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAA-G----GA----TC-----TTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
* * *
8089897 GAGTAGATCGCACCAGGTCTTATTTCCCTGATATTACAGTGGAATAGACCGAAGATTTTCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
* * * *
8089962 TTATCTCCCTGAGACTACAGCGAAGCAGATTGCAGCTGGTAATCC
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
** * *
8090007 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATTTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
*
8090072 GAGTGGATC
66 GAGTAGATC
8090081 ATATTAAATC
Statistics
Matches: 2151, Mismatches: 157, Indels: 75
0.90 0.07 0.03
Matches are distributed among these distances:
161 146 0.07
162 1 0.00
166 3 0.00
170 33 0.02
173 1 0.00
174 28 0.01
175 1256 0.58
176 507 0.24
177 31 0.01
178 2 0.00
179 3 0.00
181 3 0.00
182 2 0.00
183 31 0.01
184 2 0.00
185 74 0.03
186 28 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (175 bp):
TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
Found at i:8088262 original size:351 final size:350
Alignment explanation
Indices: 8087563--8090080 Score: 3669
Period size: 351 Copynumber: 7.2 Consensus size: 350
8087553 TTGCAGATCT
*
8087563 TATCTCCCTGAGATTACAGTGGAGCGGATT---A--AATGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTA
**
8087623 GAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
*
8087688 TTATCTCCCTGAGATTACAGCAGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGT
131 TTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGT
* * *
8087753 GGAGCGGATTAAAACCAATGATCTTATCTTTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCT
196 GGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
*
8087818 TATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATCTTATCTCCCTGAGATTACAG
261 TATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
** * * *
8087883 CGGAGCAGATCAAAGATGGTAGTCC
326 CGGAGCAGATTGAAGCTAGTAATCC
* *
8087908 TATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAAGT
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTAC-AGT
**
8087973 AGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGAT
65 AGAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGAT
*
8088038 ATTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAG
130 CTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAG
* * *
8088103 TGGAGCGGATTAAAACCAATGATCTTATCTTTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTC
195 TGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
*
8088168 TTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATCTTATCTCCCTGAGATTACA
260 TTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACA
** * * *
8088233 GCGGAGCAGATCAAAGATGGTAGTCC
325 GCGGAGCAGATTGAAGCTAGTAATCC
* * *
8088259 TATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTAAAGTTACAAGT
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTAC-AGT
**
8088324 AGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGAT
65 AGAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGAT
*
8088389 ATTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAG
130 CTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAG
*
8088454 TGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGTCAGGTC
195 TGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
8088519 TTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACA
260 TTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACA
*
8088584 GTGGAGCAGATTGAAGCTAGTAATCC
325 GCGGAGCAGATTGAAGCTAGTAATCC
* * * * *
8088610 TATCTCCCTAATATTACAATGAAGCGGATTAAAACCAAGGATCTTATCTATCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTA
* *
8088675 GAGTAGATCGCACCAGGTCTTATTTCCCTAAGATTACAGTGGAACAAACCGAAGAATTTCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
* ** * *
8088740 TTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
131 TTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGT
* *
8088805 GGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTCT
196 GGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* *
8088870 TATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTTAGATCTTATCTCCTTGAGATTACAG
261 TATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
*
8088935 TGGAGCAGATTGAAGCTAGTAATCC
326 CGGAGCAGATTGAAGCTAGTAATCC
*
8088960 TATCTCCCTGAGATTACAGTGGAGTGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTA
*
8089025 GAATAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
* * ** *** *
8089090 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-AGATCTTATCTCCCTGAGATTACAG
131 TTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTA-ATCCTATCTCCCTGAGATTACAG
* * * * * * * * * ** * * *
8089154 CGGAGCAGATCAAAGA-CACT-ATCCTATCTCCCTGAAGTTATAGTGGCGCGGATTGAAATAAAA
195 TGGAGCGGATTAAA-ACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG-CAT--CA
* * * ** ** * ** *
8089217 GATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCATCATATTGAAGCCAGAAATCTTATCT
256 GGTCTTATTTCCCTGAGA-TTACAGTGGAACAGACCG-AAGA-ATT----TCAG--ATCTTATCT
8089281 CCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
312 CCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
8089320 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTA
*
8089385 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATC
66 GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
*
8089450 TTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAGTCCTATCTCCCTGAGATTACAGT
131 TTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGT
*
8089515 GGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTCT
196 GGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* * *
8089580 TATTTCCCTGAAATTACAGTGGAACAAACCGAAGAATTTCAGATCTTATCTCCTTGAGATTACAG
261 TATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
* *
8089645 TGGAGCAAATTGAAGCTAGTAATCC
326 CGGAGCAGATTGAAGCTAGTAATCC
* *
8089670 TATCTCCCTGAGATTACAGTGGAGTGGATTAAAAACCAAGGATCTTATCGCTCTGAAGTTACAGT
1 TATCTCCCTGAGATTACAGTGGAGCGGATT-AAAACCAAGGATCTTATCTCTCTGAAGTTACAGT
*
8089735 AGAGTAGATCGCACCAGGTCTTATTTCCCTGATATTACAGTGGAACAGACCGAAGAATTTCAGAT
65 AGAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGAT
* * ** * *
8089800 CTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
130 CTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAG
* *
8089865 TGGAGCGGATTAAAACCAA-G----GA----TC-----TTACAGTAGAGTAGATCGCACCAGGTC
195 TGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
* * * *
8089916 TTATTTCCCTGATATTACAGTGGAATAGACCGAAGATTTTCAGATCTTATCTCCCTGAGACTACA
260 TTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACA
* * *
8089981 GCGAAGCAGATTGCAGCTGGTAATCC
325 GCGGAGCAGATTGAAGCTAGTAATCC
** *
8090007 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATTTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTA
*
8090072 GAGTGGATC
66 GAGTAGATC
8090081 ATATTAAATC
Statistics
Matches: 1999, Mismatches: 149, Indels: 59
0.91 0.07 0.03
Matches are distributed among these distances:
336 39 0.02
337 136 0.07
342 2 0.00
345 29 0.01
346 1 0.00
348 1 0.00
349 28 0.01
350 568 0.28
351 856 0.43
352 30 0.02
353 2 0.00
354 3 0.00
356 3 0.00
357 2 0.00
358 28 0.01
359 2 0.00
360 241 0.12
361 28 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (350 bp):
TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTA
GAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
TTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGT
GGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
TATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
CGGAGCAGATTGAAGCTAGTAATCC
Found at i:8088283 original size:44 final size:43
Alignment explanation
Indices: 8088165--8089870 Score: 398
Period size: 44 Copynumber: 38.7 Consensus size: 43
8088155 ATCGCGTCAG
* * * * *
8088165 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A-TGTA
*
8088210 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTA
1 G-TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAT-GTA
* * * * *
8088255 GTCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAATG-A
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGA-TCAAA--GATGTA
* * * * *
8088300 -TCTTATCTCTCT-AAAGTTACAAGTAGAGTAGATC---G-CGTCA
1 GTCTTATCTCCCTGAGA-TTAC-AGTGGAGCAGATCAAAGATGT-A
* * * * *
8088340 GGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCA
1 -GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-ATGT-A
* *
8088386 GATATTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTA
1 G-TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAT-GTA
* * * * *
8088431 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATG-A
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGA-TCAAA--GATGTA
* * * *
8088476 -TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATC---G-CGTCA
1 GTCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGATGT-A
* * * * *
8088515 GGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCA
1 -GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-ATGT-A
** *
8088561 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
1 G-TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAT-GTA
* * * * * * * * ***
8088606 ATCCTATCTCCCTAATATTACAATGAAGCGGATTAAA-ACCAA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATGTA
** * * * **
8088648 GGATCTTATCTATCTGA-AGTTACAGTAGAGTAGATCGCACCA-G--
1 -G-TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATC-AAAGATGTA
* * * * * * *
8088691 GTCTTATTTCCCTAAGATTACAGTGGAACAAACCGAAGAATTTCA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-ATGT-A
** *
8088736 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
1 G-TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAT-GTA
* * * * ***
8088781 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA-ACCAA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATGTA
* * * * **
8088823 GGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCACCA-G--
1 -G-TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATC-AAAGATGTA
* * * * *
8088866 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTTA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A-TGTA
* ** *
8088911 GATCTTATCTCCTTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
1 G-TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAT-GTA
* * ** * ***
8088956 ATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAA-ACCAA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATGTA
* * ** * **
8088998 GGATCTTATCTCTCTGA-AGTTACAGTAGAATAGATCGCACCA-G--
1 -G-TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATC-AAAGATGTA
* * * * *
8089041 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-ATGT-A
* **
8089086 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-G-A
1 G-TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--ATGTA
* **
8089130 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTA
1 G-TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGA-TGTA
* * * * ** **
8089175 -TCCTATCTCCCTGA-AGTTATAGTGGCGCGGATTGAA-ATAAAA
1 GTCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAT-GTA
* ** * * *
8089217 GATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCATCATATTGAAGCCA
1 G-TCTTATCTCCCTGAGA-TTACAGTGGAGCAGAT--CA--A-A--GATG-TA
* ** *
8089269 GAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 G---TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAT-GTA
* * * * ***
8089316 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA-ACCAA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATGTA
* * * * **
8089358 GGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCACCA-G--
1 -G-TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATC-AAAGATGTA
* * * * *
8089401 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A-TGTA
*
8089446 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTA
1 G-TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAT-GTA
* * * *
8089491 GTCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATG-A
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGA-TCAAA--GATGTA
* * * * **
8089536 -TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCACCA-G--
1 GTCTTATCTCCCTGAGA-TTACAGTGGAGCAGATC-AAAGATGTA
* * * * * * *
8089576 GTCTTATTTCCCTGAAATTACAGTGGAACAAACCGAAGAATTTCA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-ATGT-A
* * ** *
8089621 GATCTTATCTCCTTGAGATTACAGTGGAGCAAATTGAAGCTAGTA
1 G-TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAT-GTA
* * ** * * ***
8089666 ATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAAACCAA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATGTA
* * * * * **
8089709 GGATCTTATCGCTCTGA-AGTTACAGTAGAGTAGATCGCACCA-G--
1 -G-TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATC-AAAGATGTA
* * * * * *
8089752 GTCTTATTTCCCTGATATTACAGTGGAACAGACCGAAGAATTTCA
1 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-ATGT-A
* ** *
8089797 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGTA
1 G-TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAT-GTA
* *
8089842 ATCCTATCTCCCTGAGATTACAGTGGAGC
1 GTCTTATCTCCCTGAGATTACAGTGGAGC
8089871 GGATTAAAAC
Statistics
Matches: 1197, Mismatches: 331, Indels: 267
0.67 0.18 0.15
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 1 0.00
40 7 0.01
41 187 0.16
42 35 0.03
43 41 0.03
44 490 0.41
45 83 0.07
46 305 0.25
47 9 0.01
48 2 0.00
49 2 0.00
50 1 0.00
52 3 0.00
54 28 0.02
55 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (43 bp):
GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATGTA
Found at i:8088592 original size:526 final size:525
Alignment explanation
Indices: 8087563--8090080 Score: 3696
Period size: 526 Copynumber: 4.8 Consensus size: 525
8087553 TTGCAGATCT
8087563 TATCTCCCTGAGATTACAGTGGAGCGGATT---A--AATGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
*
8087623 GAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
66 GAGTAGATCGCATCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
* ** * *
8087688 TTATCTCCCTGAGATTACAGCAGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGT
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
* * * **
8087753 GGAGCGGATTAAAACCAATGATCTTATCTTTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCT
196 GGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTCT
*
8087818 TATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATCTTATCTCCCTGAGATTACAG
261 TATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
* *
8087883 CGGAGCAGATCAAAGATGGTAGTCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAATG
326 CGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATG
**
8087948 ATCTTATCTCTCTGAAGTTACAAGTAGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAG
391 ATCTTATCTCTCTGAAGTTAC-AGTAGAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAG
* * ** * *
8088013 TGGAACAGACCGAAGAATTTCAGATATTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGG
455 TGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG
8088078 TAATCC
520 TAATCC
* *
8088084 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTTTCTGAAGTTACAGCA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
* *
8088149 GAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATC
66 GAGTAGATCGCATCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
** * * * *
8088214 TTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATGGTAGTCCTATCTCTCTGAGATTACAGT
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
* * **
8088279 GGAGCGGATTAAAACCAATGATCTTATCTCTCTAAAGTTACAAGTAGAGTAGATCGCGTCAGGTC
196 GGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTAC-AGTAGAGTAGATCGCACCAGGTC
*
8088344 TTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATATTATCTCCCTGAGATTACA
260 TTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACA
8088409 GCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAT
325 GCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAT
**
8088474 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAG
390 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAG
8088539 TGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG
455 TGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAG
8088604 TAATCC
520 TAATCC
* * * * * *
8088610 TATCTCCCTAATATTACAATGAAGCGGATTAAAACCAAGGATCTTATCTATCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
* * *
8088675 GAGTAGATCGCACCAGGTCTTATTTCCCTAAGATTACAGTGGAACAAACCGAAGAATTTCAGATC
66 GAGTAGATCGCATCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
*
8088740 TTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
131 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
8088805 GGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTCT
196 GGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTCT
* *
8088870 TATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTTAGATCTTATCTCCTTGAGATTACAG
261 TATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
* ** * * * *
8088935 TGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAACCAAGG
326 CGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATG
*
8089000 ATCTTATCTCTCTGAAGTTACAGTAGAATAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGT
391 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGT
* *
8089065 GGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-
456 GGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
*
8089129 AGATCT
521 A-ATCC
* * * * * * *
8089135 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAGA-CACT-ATCCTATCTCCCTGAAGTTATAGT
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAA-ACCAATGATCTTATCTCTCTGAAGTTACAGT
* * ** * * * * * * ** ** * **
8089198 GGCGCGGATTGAAATAAAAGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCATCATATT
65 AGAGTAGATCG-CAT--CAGGTCTTATTTCCCTGAGA-TTACAGTGGAACAGACCG-AAGA-ATT
*
8089262 GAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
124 ----TCAG--ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
8089327 CTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
183 CTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
*
8089392 TCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATCTTATCTC
248 TCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTC
*
8089457 CCTGAGATTACAGCGGAGCAGATCAAAGATGGTAGTCCTATCTCCCTGAGATTACAGTGGAGCGG
313 CCTGAGATTACAGCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGTGGAGCGG
8089522 ATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTCTTATTTCC
378 ATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTCTTATTTCC
* * *
8089587 CTGAAATTACAGTGGAACAAACCGAAGAATTTCAGATCTTATCTCCTTGAGATTACAGTGGAGCA
443 CTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGTGGAGCA
*
8089652 AATTGAAGCTAGTAATCC
508 GATTGAAGCTAGTAATCC
* * *
8089670 TATCTCCCTGAGATTACAGTGGAGTGGATTAAAAACCAAGGATCTTATCGCTCTGAAGTTACAGT
1 TATCTCCCTGAGATTACAGTGGAGCGGATT-AAAACCAATGATCTTATCTCTCTGAAGTTACAGT
* *
8089735 AGAGTAGATCGCACCAGGTCTTATTTCCCTGATATTACAGTGGAACAGACCGAAGAATTTCAGAT
65 AGAGTAGATCGCATCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGAT
* *
8089800 CTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
130 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
8089865 TGGAGCGGATTAAAACCAAGG-----A----TC-----TTACAGTAGAGTAGATCGCACCAGGTC
195 TGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTC
* * * *
8089916 TTATTTCCCTGATATTACAGTGGAATAGACCGAAGATTTTCAGATCTTATCTCCCTGAGACTACA
260 TTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACA
* *** * ** *
8089981 GCGAAGCAGATTGCAGCTGGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG
325 GCGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAT
* *
8090046 GATCTTATTTCTCTGAAGTTACAGTAGAGTGGATC
390 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC
8090081 ATATTAAATC
Statistics
Matches: 1813, Mismatches: 159, Indels: 59
0.89 0.08 0.03
Matches are distributed among these distances:
512 176 0.10
517 2 0.00
521 31 0.02
524 28 0.02
525 298 0.16
526 603 0.33
527 195 0.11
528 5 0.00
529 3 0.00
532 3 0.00
533 5 0.00
534 27 0.01
535 404 0.22
536 7 0.00
537 26 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (525 bp):
TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGTA
GAGTAGATCGCATCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATC
TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
GGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTCT
TATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
CGGAGCAGATCAAAGATGGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAATG
ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCAGGTCTTATTTCCCTGAGATTACAGT
GGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
AATCC
Found at i:8089376 original size:142 final size:141
Alignment explanation
Indices: 8089118--8089396 Score: 418
Period size: 142 Copynumber: 2.0 Consensus size: 141
8089108 AGTGGAGCAG
*
8089118 ATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTATCCTATCT
1 ATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTATCCTATCT
* * * *
8089183 CCCTGAAGTTATAGTGGCGCGGATTGAAATAAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTA
66 CCCTGAAGTTACAGTGGAGCGGATTAAAACAAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTA
8089248 GATCGCATCAT
131 GATCGCATCAT
** *
8089259 ATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CTAGTAATCCTAT
1 ATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGAC-ACT-ATCCTAT
* * *
8089323 CTCCCTG-AGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTAGA
64 CTCCCTGAAG-TTACAGTGGAGCGGATTAAAACAAAAGATCTTATCTCTCTGAAGTTACAGCAGA
8089387 GTAGATCGCA
128 GTAGATCGCA
8089397 CCAGGTCTTA
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
140 1 0.01
141 52 0.42
142 71 0.57
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (141 bp):
ATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTATCCTATCT
CCCTGAAGTTACAGTGGAGCGGATTAAAACAAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTA
GATCGCATCAT
Found at i:8090006 original size:161 final size:161
Alignment explanation
Indices: 8089728--8090052 Score: 560
Period size: 161 Copynumber: 2.0 Consensus size: 161
8089718 CGCTCTGAAG
8089728 TTACAGTAGAGTAGATCGCACCAGGTCTTATTTCCCTGATATTACAGTGGAACAGACCGAAGAAT
1 TTACAGTAGAGTAGATCGCACCAGGTCTTATTTCCCTGATATTACAGTGGAACAGACCGAAGAAT
* * * *
8089793 TTCAGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAG
66 TTCAGATCTTATCTCCCTGAGACTACAGCGAAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAG
*
8089858 ATTACAGTGGAGCGGATTAAAACCAAGGATC
131 ATTACAGTGGAGCGGATTAAAACAAAGGATC
* *
8089889 TTACAGTAGAGTAGATCGCACCAGGTCTTATTTCCCTGATATTACAGTGGAATAGACCGAAGATT
1 TTACAGTAGAGTAGATCGCACCAGGTCTTATTTCCCTGATATTACAGTGGAACAGACCGAAGAAT
* *
8089954 TTCAGATCTTATCTCCCTGAGACTACAGCGAAGCAGATTGCAGCTGGTAATCCTATCTCCCTGAG
66 TTCAGATCTTATCTCCCTGAGACTACAGCGAAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAG
*
8090019 ATTACAGTGGAGCGGATTAAAATAAAGGATC
131 ATTACAGTGGAGCGGATTAAAACAAAGGATC
8090050 TTA
1 TTA
8090053 TTTCTCTGAA
Statistics
Matches: 154, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
161 154 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (161 bp):
TTACAGTAGAGTAGATCGCACCAGGTCTTATTTCCCTGATATTACAGTGGAACAGACCGAAGAAT
TTCAGATCTTATCTCCCTGAGACTACAGCGAAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAG
ATTACAGTGGAGCGGATTAAAACAAAGGATC
Found at i:8095959 original size:21 final size:19
Alignment explanation
Indices: 8095921--8095959 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
8095911 AAATTTCCCG
*
8095921 AATAATTTTACATTACAAA
1 AATAATTTTACATCACAAA
8095940 AATAATGTTTAACATCACAA
1 AATAAT-TTT-ACATCACAA
8095960 TTCCATACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 3 0.18
21 8 0.47
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.33
Consensus pattern (19 bp):
AATAATTTTACATCACAAA
Found at i:8098830 original size:34 final size:35
Alignment explanation
Indices: 8098777--8098843 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
8098767 CAAACACCAG
*
8098777 AAAATATTTTTCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
8098812 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
8098844 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:8099611 original size:40 final size:41
Alignment explanation
Indices: 8099534--8099621 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 41
8099524 CATTATGGAA
* * *
8099534 TACTGAATATTGTTTTTGAGTACTAAATTGAATTGTGAAGT
1 TACTGAATATTGTTTATGAGTACTAAATTGAACTGTGAAAT
* **
8099575 TACTGAATATTG-TTATGTGTACTGCATTGAACTGTGAAAT
1 TACTGAATATTGTTTATGAGTACTAAATTGAACTGTGAAAT
8099615 TACTGAA
1 TACTGAA
8099622 GTAATGAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
40 29 0.71
41 12 0.29
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (41 bp):
TACTGAATATTGTTTATGAGTACTAAATTGAACTGTGAAAT
Found at i:8099894 original size:45 final size:45
Alignment explanation
Indices: 8099825--8099921 Score: 151
Period size: 45 Copynumber: 2.2 Consensus size: 45
8099815 GCCGACTACT
*
8099825 GTTACTGTTACCGATTCGACACTTTGTGTGTTGAATACTGTTACC
1 GTTACTGTTACAGATTCGACACTTTGTGTGTTGAATACTGTTACC
* *
8099870 GTTATTGTTACAGATTC-AGCACTTTGTGTGTTGAATACTGTTACT
1 GTTACTGTTACAGATTCGA-CACTTTGTGTGTTGAATACTGTTACC
8099915 GTTACTG
1 GTTACTG
8099922 CTACTGTTAC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
44 1 0.02
45 46 0.98
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (45 bp):
GTTACTGTTACAGATTCGACACTTTGTGTGTTGAATACTGTTACC
Found at i:8103825 original size:13 final size:14
Alignment explanation
Indices: 8103801--8103833 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
8103791 ATTTTATTTT
8103801 TCAAAAAGCACTTC
1 TCAAAAAGCACTTC
8103815 TCAAAAA-CACTTC
1 TCAAAAAGCACTTC
8103828 TCAAAA
1 TCAAAA
8103834 GTAATTTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.48, C:0.27, G:0.03, T:0.21
Consensus pattern (14 bp):
TCAAAAAGCACTTC
Found at i:8105836 original size:22 final size:21
Alignment explanation
Indices: 8105808--8105857 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
8105798 AAAAAAATAG
8105808 TTTATATATATTTGAAGGTATA
1 TTTATATAT-TTTGAAGGTATA
* *
8105830 TTTATAT-TTTTTAAGGTGTA
1 TTTATATATTTTGAAGGTATA
8105850 TTTATATA
1 TTTATATA
8105858 AAATTTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 17 0.68
21 1 0.04
22 7 0.28
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (21 bp):
TTTATATATTTTGAAGGTATA
Found at i:8106647 original size:17 final size:17
Alignment explanation
Indices: 8106625--8106661 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
8106615 TCTTGATTCA
* *
8106625 TTTTTATTTATTTAATT
1 TTTTTATTTAATCAATT
8106642 TTTTTATTTAATCAATT
1 TTTTTATTTAATCAATT
8106659 TTT
1 TTT
8106662 ATGTTTGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTTATTTAATCAATT
Found at i:8111133 original size:18 final size:18
Alignment explanation
Indices: 8111110--8111148 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8111100 TCACATATGT
8111110 TAAATTCATTAATTAAAA
1 TAAATTCATTAATTAAAA
* **
8111128 TAAATTCTTTTTTTAAAA
1 TAAATTCATTAATTAAAA
8111146 TAA
1 TAA
8111149 TACAATTGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAATTCATTAATTAAAA
Found at i:8117369 original size:21 final size:22
Alignment explanation
Indices: 8117343--8117396 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
8117333 CAGCGGTGGC
*
8117343 GGTGAGATTAGTTACTGTAG-A
1 GGTGAGATTAGATACTGTAGCA
*
8117364 GGTGAGATTGGATACTGTAGCA
1 GGTGAGATTAGATACTGTAGCA
8117386 -GTGAGATTAGA
1 GGTGAGATTAGA
8117397 AACAGTGGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.30, C:0.06, G:0.35, T:0.30
Consensus pattern (22 bp):
GGTGAGATTAGATACTGTAGCA
Found at i:8124198 original size:3 final size:3
Alignment explanation
Indices: 8124190--8124228 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
8124180 ATATCCATTG
8124190 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8124229 GTAGTAGTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8124233 original size:3 final size:3
Alignment explanation
Indices: 8124227--8124251 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8124217 ATAATAATAA
8124227 TAG TAG TAG TAG TAG TAG TAG TAG T
1 TAG TAG TAG TAG TAG TAG TAG TAG T
8124252 TTTAAAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TAG
Found at i:8126166 original size:3 final size:3
Alignment explanation
Indices: 8126160--8126222 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
8126150 AAGCTACTAC
8126160 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8126208 TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT
8126223 ACTTATACAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8127876 original size:6 final size:6
Alignment explanation
Indices: 8127861--8127905 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
8127851 AAATATGCAT
8127861 AATT-A AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATT
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATT
8127906 TCATCCATAC
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
5 4 0.10
6 35 0.90
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
AATTAA
Found at i:8129764 original size:17 final size:18
Alignment explanation
Indices: 8129733--8129766 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8129723 GTAATGATTT
8129733 ATTATAAATGAAAAATTG
1 ATTATAAATGAAAAATTG
*
8129751 ATTA-AAATGGAAAATT
1 ATTATAAATGAAAAATT
8129767 TGCTCATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (18 bp):
ATTATAAATGAAAAATTG
Done.