Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 49 of 168
Found at i:13804402 original size:219 final size:218
Alignment explanation
Indices: 13804051--13804484 Score: 543
Period size: 219 Copynumber: 2.0 Consensus size: 218
13804041 GGATAGACTC
* * * * *
13804051 GTCTAAGGTAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGAAATCATAAAAAGGTTGGTAT
1 GTCTAAGGCAACCTTAAAAAGGTTGGAATAGACCTCGTCTAAGGAAACCATAAAAAGGTTGGGAT
* * * * * * **
13804116 AGTCCTTGTCTAAGGTAACTTTTAAAAACGGTTGGGATAGAGCCGTCTAAGGCAAGTTTAAAAAG
66 AGACCTTGTCTAAGGCAAATTTTAAAAACGGTTGGGATAGACCCATCTAAAGCAACCTTAAAAAG
* * * *
13804181 GTTGGAATAGACCTTGTCTAA-GACAACCTATAAAAAAAGGCTGGGATAGACCTATCTAAGGCAA
131 GTTGGAATAAACCTTGTCCAAGGA-AACCT-TAAAAAAAGGCTGGGATAAACCCATCTAAGGCAA
13804245 CCTTAAACAAG-TTGGGATAGACCAT
194 CCTTAAA-AAGATTGGGATAGACCAT
* * *
13804270 GTCTAAGGCAACCTTTAAAAAGGTTGGAATAGA-CTCGTTTAAGGCAACCTTAAAAAGGTTGGGA
1 GTCTAAGGCAACC-TTAAAAAGGTTGGAATAGACCTCGTCTAAGGAAACCATAAAAAGGTTGGGA
*
13804334 TAGACCTTGTCTAAGGCAAATTTTAGAAAA-GGTTGGGATAGACCCATTTAAAGCAACCTTAAAA
65 TAGACCTTGTCTAAGGCAAATTTTA-AAAACGGTTGGGATAGACCCATCTAAAGCAACCTTAAAA
* * * * * * *
13804398 AGGTTGGGATAAATCTTGTCCAAGGAAACCTTTAAAAGAGGTTGGGATAAACCCGTCTAAGGTAA
129 AGGTTGGAATAAACCTTGTCCAAGGAAACCTTAAAAAAAGGCTGGGATAAACCCATCTAAGGCAA
13804463 CCTTAAAAAGATTGGGATAGAC
194 CCTTAAAAAGATTGGGATAGAC
13804485 ACGTATAATG
Statistics
Matches: 183, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
217 3 0.02
218 45 0.25
219 111 0.61
220 24 0.13
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (218 bp):
GTCTAAGGCAACCTTAAAAAGGTTGGAATAGACCTCGTCTAAGGAAACCATAAAAAGGTTGGGAT
AGACCTTGTCTAAGGCAAATTTTAAAAACGGTTGGGATAGACCCATCTAAAGCAACCTTAAAAAG
GTTGGAATAAACCTTGTCCAAGGAAACCTTAAAAAAAGGCTGGGATAAACCCATCTAAGGCAACC
TTAAAAAGATTGGGATAGACCAT
Found at i:13804623 original size:6 final size:7
Alignment explanation
Indices: 13804592--13804630 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
13804582 TACAACTAAA
13804592 AAAATAT
1 AAAATAT
13804599 AAAATAT
1 AAAATAT
13804606 AAAATAT
1 AAAATAT
13804613 AAAAT-T
1 AAAATAT
13804619 AAAAT-T
1 AAAATAT
13804625 AAAATA
1 AAAATA
13804631 AAGATTGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 12 0.39
7 19 0.61
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAATAT
Found at i:13809713 original size:27 final size:27
Alignment explanation
Indices: 13809683--13809894 Score: 201
Period size: 27 Copynumber: 7.8 Consensus size: 27
13809673 TGCGATTCGT
* * *
13809683 GGGTAAAATGAGTGAACTACCCCCGAA
1 GGGTAAAATGATTGAAATACCCTCGAA
**
13809710 GGGTAAAATGACCGAAATACCCTCGAA
1 GGGTAAAATGATTGAAATACCCTCGAA
* *
13809737 GGGTAAAATGATTGAAATACCCCCAAA
1 GGGTAAAATGATTGAAATACCCTCGAA
* * **
13809764 GGGTAAAATGATCGAAATACCCTGGTT
1 GGGTAAAATGATTGAAATACCCTCGAA
* *
13809791 GAGTAAAATGATTGAAATAACCTCGAA
1 GGGTAAAATGATTGAAATACCCTCGAA
* * **
13809818 GGGTAAAATGATCGGAATA-CCTCCGGTT
1 GGGTAAAATGATTGAAATACCCT-C-GAA
* **
13809846 GAGTAAAATGACCGAAATACCCTCGAA
1 GGGTAAAATGATTGAAATACCCTCGAA
* *
13809873 GGGTAAAATAACTGAAATACCC
1 GGGTAAAATGATTGAAATACCC
13809895 CCATAAGGTA
Statistics
Matches: 149, Mismatches: 33, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
26 3 0.02
27 125 0.84
28 18 0.12
29 3 0.02
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGATTGAAATACCCTCGAA
Found at i:13809747 original size:54 final size:54
Alignment explanation
Indices: 13809685--13809894 Score: 242
Period size: 54 Copynumber: 3.9 Consensus size: 54
13809675 CGATTCGTGG
* * ** *
13809685 GTAAAATGAGTGAACTACCCCCGAAGGGTAAAATGACCGAAATACCCTCGAAGG
1 GTAAAATGATTGAAATACCCCCGAAGGGTAAAATGACCGAAATACCCTCGTTGA
* * *
13809739 GTAAAATGATTGAAATACCCCCAAAGGGTAAAATGATCGAAATACCCTGGTTGA
1 GTAAAATGATTGAAATACCCCCGAAGGGTAAAATGACCGAAATACCCTCGTTGA
* * * *
13809793 GTAAAATGATTGAAATAACCTCGAAGGGTAAAATGATCGGAATA-CCTCCGGTTGA
1 GTAAAATGATTGAAATACCCCCGAAGGGTAAAATGACCGAAATACCCT-C-GTTGA
** * * *
13809848 GTAAAATGACCGAAATACCCTCGAAGGGTAAAATAACTGAAATACCC
1 GTAAAATGATTGAAATACCCCCGAAGGGTAAAATGACCGAAATACCC
13809895 CCATAAGGTA
Statistics
Matches: 133, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
53 3 0.02
54 86 0.65
55 42 0.32
56 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.20
Consensus pattern (54 bp):
GTAAAATGATTGAAATACCCCCGAAGGGTAAAATGACCGAAATACCCTCGTTGA
Found at i:13809904 original size:27 final size:26
Alignment explanation
Indices: 13809684--13809922 Score: 113
Period size: 27 Copynumber: 8.8 Consensus size: 26
13809674 GCGATTCGTG
* * *
13809684 GGTAAAATGAGTGAACTACCCCCGAAG
1 GGTAAAATGACTGAAATACCCCC-AAA
* * *
13809711 GGTAAAATGACCGAAATACCCTCGAAG
1 GGTAAAATGACTGAAATACCC-CCAAA
*
13809738 GGTAAAATGATTGAAATACCCCCAAA
1 GGTAAAATGACTGAAATACCCCCAAA
*****
13809764 GGGTAAAATGA-TCGAAATACCCTGGTT
1 -GGTAAAATGACT-GAAATACCCCCAAA
* * * *
13809791 GAGTAAAATGATTGAAATAACCTCGAAG
1 G-GTAAAATGACTGAAAT-ACCCCCAAA
* ****
13809819 GGTAAAATGA-TCGGAATACCTCCGGTT
1 GGTAAAATGACT-GAAATACC-CCCAAA
* * *
13809846 GAGTAAAATGACCGAAATACCCTCGAAG
1 G-GTAAAATGACTGAAATACCC-CCAAA
*
13809874 GGTAAAATAACTGAAATACCCCCATAA
1 GGTAAAATGACTGAAATACCCCCA-AA
* **
13809901 GGTAGAATGACTGTTATACCCC
1 GGTAAAATGACTGAAATACCCC
13809923 TAGGAAATGA
Statistics
Matches: 164, Mismatches: 36, Indels: 24
0.73 0.16 0.11
Matches are distributed among these distances:
26 11 0.07
27 127 0.77
28 26 0.16
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.20
Consensus pattern (26 bp):
GGTAAAATGACTGAAATACCCCCAAA
Found at i:13810141 original size:26 final size:26
Alignment explanation
Indices: 13810110--13810183 Score: 112
Period size: 26 Copynumber: 2.8 Consensus size: 26
13810100 ACATATACTG
* *
13810110 TTACTGGAAGCTTTGTTGCGATTCTA
1 TTACTGGCAGCTTTGCTGCGATTCTA
* *
13810136 TTACTGGCAGCTTCGCTACGATTCTA
1 TTACTGGCAGCTTTGCTGCGATTCTA
13810162 TTACTGGCAGCTTTGCTGCGAT
1 TTACTGGCAGCTTTGCTGCGAT
13810184 ATTGGTGTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCGATTCTA
Found at i:13816454 original size:15 final size:13
Alignment explanation
Indices: 13816422--13816449 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
13816412 GTTTCGGTCA
13816422 GTTTTACGTTCTT
1 GTTTTACGTTCTT
13816435 GTTTTACGTTCTT
1 GTTTTACGTTCTT
13816448 GT
1 GT
13816450 GTTTTCACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.14, G:0.18, T:0.61
Consensus pattern (13 bp):
GTTTTACGTTCTT
Found at i:13817131 original size:27 final size:27
Alignment explanation
Indices: 13817093--13817275 Score: 226
Period size: 27 Copynumber: 6.8 Consensus size: 27
13817083 TGCTATTCGT
*
13817093 GGGTAAAATGACTGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*
13817120 GGGTAAAATGACCGAAATACCTTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*
13817147 AGGTAAAATGACCGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* *
13817174 GGATAAAATGACCAAAATA-CCTCCGAA
1 GGGTAAAATGACCGAAATACCCT-CGAA
** *
13817201 GGGTAAAATGATTGAAATACCC-CTATA
1 GGGTAAAATGACCGAAATACCCTCGA-A
* *
13817228 GGGTAAAATGAACGAAATACCCCCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
**
13817255 GGGTAAAATGACTAAAATACC
1 GGGTAAAATGACCGAAATACC
13817276 ACCATAAGGT
Statistics
Matches: 134, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.04
27 125 0.93
28 4 0.03
ACGTcount: A:0.44, C:0.19, G:0.20, T:0.17
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCTCGAA
Found at i:13817158 original size:54 final size:54
Alignment explanation
Indices: 13817093--13817275 Score: 260
Period size: 54 Copynumber: 3.4 Consensus size: 54
13817083 TGCTATTCGT
*
13817093 GGGTAAAATGACTGAAATACCCTCGAAGGGTAAAATGACCGAAATACCTTCGAA
1 GGGTAAAATGACTGAAATACCCTCGAAGGGTAAAATGACCGAAATACCTCCGAA
* * * *
13817147 AGGTAAAATGACCGAAATACCCTCGAAGGATAAAATGACCAAAATACCTCCGAA
1 GGGTAAAATGACTGAAATACCCTCGAAGGGTAAAATGACCGAAATACCTCCGAA
* * * *
13817201 GGGTAAAATGATTGAAATACCC-CTATAGGGTAAAATGAACGAAATACCCCCGAA
1 GGGTAAAATGACTGAAATACCCTCGA-AGGGTAAAATGACCGAAATACCTCCGAA
*
13817255 GGGTAAAATGACTAAAATACC
1 GGGTAAAATGACTGAAATACC
13817276 ACCATAAGGT
Statistics
Matches: 113, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
53 2 0.02
54 111 0.98
ACGTcount: A:0.44, C:0.19, G:0.20, T:0.17
Consensus pattern (54 bp):
GGGTAAAATGACTGAAATACCCTCGAAGGGTAAAATGACCGAAATACCTCCGAA
Found at i:13817293 original size:81 final size:81
Alignment explanation
Indices: 13817096--13817306 Score: 230
Period size: 81 Copynumber: 2.6 Consensus size: 81
13817086 TATTCGTGGG
** * ** * * * *
13817096 TAAAATGACTGAAATACC-CTCGAAGGGTAAAATGACCGAAATACCTTCGA-AAGGTAAAATGAC
1 TAAAATGACCAAAATACCAC-CGAAAGGTAAAATGATTGAAATACC-CCTATAGGGTAAAATGAA
*
13817159 CGAAATACCCTCGAAGGA
64 CGAAATACCCCCGAAGGA
* *
13817177 TAAAATGACCAAAATACCTCCGAAGGGTAAAATGATTGAAATACCCCTATAGGGTAAAATGAACG
1 TAAAATGACCAAAATACCACCGAAAGGTAAAATGATTGAAATACCCCTATAGGGTAAAATGAACG
*
13817242 AAATACCCCCGAAGGG
66 AAATACCCCCGAAGGA
* **
13817258 TAAAATGACTAAAATACCACC-ATAAGGTAAAATGATTGTTATACCCCTA
1 TAAAATGACCAAAATACCACCGA-AAGGTAAAATGATTGAAATACCCCTA
13817307 GGAGATGAAA
Statistics
Matches: 112, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
80 3 0.03
81 108 0.96
82 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.19
Consensus pattern (81 bp):
TAAAATGACCAAAATACCACCGAAAGGTAAAATGATTGAAATACCCCTATAGGGTAAAATGAACG
AAATACCCCCGAAGGA
Found at i:13819532 original size:140 final size:140
Alignment explanation
Indices: 13819307--13820107 Score: 898
Period size: 140 Copynumber: 5.8 Consensus size: 140
13819297 TAAAACTGAG
* **
13819307 TCTTATTTAAGCATTGCCTTAGGCATGCATATCCCAAC-CTTTATGCAAAGAGTTGGCCAAAGCA
1 TCTTATTTAAGCATTGCCTTAGGCATGCATATCCCAACTC-TTATACAAAGAGTTGGCCAAAGTG
* * * * *
13819371 TATGTC-AGCAATTTTATCCCAACATTTAGGAAAGTGTTGGCCCAAAAGTGTCGGCATAGTGTTG
65 TATATCGA-CAAGTCTATCCCAACACTTAGGAAAGTGTTAGCCCAAAAGTGTCGGCATAGTGTTG
** *
13819435 GACAAAGTTGAA
129 GACAAAGCCGAC
* * * * * **
13819447 TCTTATTTAAGTATTGCCTTAGGCATGTATATACCAATTTTTATACAAAGAGTTGGCCAAAACGT
1 TCTTATTTAAGCATTGCCTTAGGCATGCATATCCCAACTCTTATACAAAGAGTTGGCCAAAGTGT
** * *
13819512 ATGCCGACAAGTCTATCCCAACAC-----------TTAG--C-AAAGTGTCGGCATGGTGTTGAA
66 ATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTTAGCCCAAAAGTGTCGGCATAGTGTTGGA
*
13819563 CAAAGCAGAC
131 CAAAGCCGAC
* * * * *
13819573 TCTGAATTAAGCATTGTCTCAGGCATGCATATCCCAACTCTTATACAAAGGGTTGGCCAAAGTGT
1 TCTTATTTAAGCATTGCCTTAGGCATGCATATCCCAACTCTTATACAAAGAGTTGGCCAAAGTGT
* * *
13819638 ATATCAACAAGTCTATCCCAACACTTAGGAAACTGTTAGCCCAAAAGTGTAGGCATAGTGTTGGA
66 ATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTTAGCCCAAAAGTGTCGGCATAGTGTTGGA
* *
13819703 CAAAGTCGGC
131 CAAAGCCGAC
* ** * *
13819713 TCTTATTTCAGTGTTGCCTTAGGCATGCATATCCCAACTCTTATATAAAAAGTTGGCCAAAGTGT
1 TCTTATTTAAGCATTGCCTTAGGCATGCATATCCCAACTCTTATACAAAGAGTTGGCCAAAGTGT
* *
13819778 ATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTAAGCCCAAAAATGTCGGCATAGTGTTGGA
66 ATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTTAGCCCAAAAGTGTCGGCATAGTGTTGGA
13819843 CAAAGCCGAC
131 CAAAGCCGAC
* * * * *
13819853 TCTTATTTAAG-AGTTGCCTTAGGCATGCATATCCCAAATCCTATATAGAGAATTGGCCAAAGTG
1 TCTTATTTAAGCA-TTGCCTTAGGCATGCATATCCCAACTCTTATACAAAGAGTTGGCCAAAGTG
** * * * * * *
13819917 TATATCGGGAAGTCTATCCTAACACTTTGGAAAGTGTTGGCCTAAAAGTTTTGGCATAGTGTTGG
65 TATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTTAGCCCAAAAGTGTCGGCATAGTGTTGG
13819982 ACAAAGCCGAC
130 ACAAAGCCGAC
** *
13819993 TAATATTTAAGCATTGCCTTAGGCATGCATATCCCAACTCTTATACAAAGAGTTAGCCAAAGTGT
1 TCTTATTTAAGCATTGCCTTAGGCATGCATATCCCAACTCTTATACAAAGAGTTGGCCAAAGTGT
* * * * * *
13820058 ATGTCGACATGTCTATCCCAACACTTAGAAAAGTGTCACCCCAAATGTGT
66 ATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTTAGCCCAAAAGTGT
13820108 TGCAGTAGGT
Statistics
Matches: 549, Mismatches: 94, Indels: 36
0.81 0.14 0.05
Matches are distributed among these distances:
126 101 0.18
127 1 0.00
129 3 0.01
137 4 0.01
139 1 0.00
140 437 0.80
141 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (140 bp):
TCTTATTTAAGCATTGCCTTAGGCATGCATATCCCAACTCTTATACAAAGAGTTGGCCAAAGTGT
ATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTTAGCCCAAAAGTGTCGGCATAGTGTTGGA
CAAAGCCGAC
Found at i:13827154 original size:128 final size:129
Alignment explanation
Indices: 13826898--13827299 Score: 502
Period size: 129 Copynumber: 3.1 Consensus size: 129
13826888 AAAAACAAAT
* * * * * *
13826898 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCCTTTATATTTTAACTAGAATTAATAAATAT
1 TATATTATTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATAT
* * * *
13826963 AATTATTTATATTAGTAAA-TCTAGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCA
66 AACTACTTATATTAATAAATTC-GGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCA
* **
13827027 TATATTATTTCCAAAAGAATATTAATTCCCACATCTTTTATATTTTGACCAAAATTAATTAATAT
1 TATATTATTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATAT
*
13827092 AACTACTT-TATTAATAAATTCGGTAAAATATATACAATGAATATTTTGTATGAATCAAATTCAT
66 AACTACTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTC--
13827156 A
129 A
* * * * *
13827157 TATTAGTTATATTCGTTCCAAAAGAATTTTAATTTTCATGTCTTATATATTTTGATCGAAATTAA
1 TA-TA--T-TA-T--TTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAA
* * *
13827222 TTAACATAACTTCTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCA
59 TTAATATAACTACTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCA
13827287 AATTCA
124 AATTCA
13827293 TATATTA
1 TATATTA
13827300 ATTATATTCT
Statistics
Matches: 236, Mismatches: 26, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
128 48 0.20
129 64 0.27
130 3 0.01
131 2 0.01
132 2 0.01
133 2 0.01
134 2 0.01
135 3 0.01
136 3 0.01
137 55 0.23
138 52 0.22
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (129 bp):
TATATTATTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATAT
AACTACTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCA
Found at i:13827189 original size:137 final size:138
Alignment explanation
Indices: 13827035--13827308 Score: 424
Period size: 138 Copynumber: 2.0 Consensus size: 138
13827025 CATATATTAT
* *
13827035 TTCCAAAAGAATATTAATTCCCACATCTTTTATATTTTGACCAAAATTAATTAATATAACTACTT
1 TTCCAAAAGAATATTAATTCCCACATCTTATATATTTTGACCAAAATTAATTAACATAACTACTT
* *
13827100 -TATTAATAAATTCGGTAAAATATATACAATGAATATTTTGTATGAATCAAATTCATATATTAGT
66 ATATTAATAAATTCGATAAAATATATACAATGAATATTTTGTATGAATCAAATTCATATATTAAT
13827164 TATATTCG
131 TATATTCG
* ** ** * * *
13827172 TTCCAAAAGAATTTTAATTTTCATGTCTTATATATTTTGATCGAAATTAATTAACATAACTTCTT
1 TTCCAAAAGAATATTAATTCCCACATCTTATATATTTTGACCAAAATTAATTAACATAACTACTT
*
13827237 ATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAAATTCATATATTAAT
66 ATATTAATAAATTCGATAAAATATATACAATGAATATTTTGTATGAATCAAATTCATATATTAAT
13827302 TATATTC
131 TATATTC
13827309 TTTTTAAAAA
Statistics
Matches: 123, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
137 55 0.45
138 68 0.55
ACGTcount: A:0.41, C:0.11, G:0.06, T:0.43
Consensus pattern (138 bp):
TTCCAAAAGAATATTAATTCCCACATCTTATATATTTTGACCAAAATTAATTAACATAACTACTT
ATATTAATAAATTCGATAAAATATATACAATGAATATTTTGTATGAATCAAATTCATATATTAAT
TATATTCG
Found at i:13828694 original size:49 final size:49
Alignment explanation
Indices: 13828523--13828709 Score: 200
Period size: 50 Copynumber: 3.8 Consensus size: 49
13828513 GGGTAAAGAG
* * * *
13828523 ATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGACATGAAAC
* ** *
13828573 GTCCCCCGTAAGACCATGTCTGGGACATGGCA-TGGACACCGATATGAGAAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGG-CA-CGACATGA-AAC
* * *
13828624 -TCCCATGTAAGACCATATCTGGGATATGGCATTGGTA-GTACATGAAAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACG-ACATGAAAC
*
13828672 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
13828710 TGCTATTATC
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
48 4 0.03
49 41 0.36
50 66 0.57
51 4 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (49 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGACATGAAAC
Found at i:13830076 original size:234 final size:234
Alignment explanation
Indices: 13829667--13830140 Score: 894
Period size: 234 Copynumber: 2.0 Consensus size: 234
13829657 CCATATGAAA
*
13829667 ATCCTACAATGAGAAAACTTATTTTTAGTGGCAAGAGGTCAGGACAGTCGAGTGGTGAAATAGGG
1 ATCCTACAATGAGAAAACTTATTTTTAGTGGCAAGAGGTCAGGACAGCCGAGTGGTGAAATAGGG
*
13829732 GAGACTTTAACTAATAAATTGTACTAATTGGCTCAACCGAAAATTCTAAAAAACTTATGGTAAGA
66 GAGACTTTAACTAATAAATTGTACTAATTGGCTAAACCGAAAATTCTAAAAAACTTATGGTAAGA
*
13829797 TGATATATAAGCCTAGTTTCAGGGAAAATTTACTGATTTAAATTTTGAATTCTGTAGCTCGAGTT
131 TGATATATAAGCCTAGTTTCAGGGAAAATTTACGGATTTAAATTTTGAATTCTGTAGCTCGAGTT
13829862 ATAAATGATTTAGTGACTGCTGCGCGAGTGGACAGCTTT
196 ATAAATGATTTAGTGACTGCTGCGCGAGTGGACAGCTTT
13829901 ATCCTACAATGAGAAAACTTATTTTTAGTGGCAAGAGGTCAGGACAGCCGAGTGGTGAAATAGGG
1 ATCCTACAATGAGAAAACTTATTTTTAGTGGCAAGAGGTCAGGACAGCCGAGTGGTGAAATAGGG
* *
13829966 GAGACTTTAACTAATAAATTGTACTAATTGGCTAAACCGAGAATTCTGAAAAACTTATGGTAAGA
66 GAGACTTTAACTAATAAATTGTACTAATTGGCTAAACCGAAAATTCTAAAAAACTTATGGTAAGA
*
13830031 TGATATATAAGTCTAGTTTCAGGGAAAATTTACGGATTTAAATTTTGAATTCTGTAGCTCGAGTT
131 TGATATATAAGCCTAGTTTCAGGGAAAATTTACGGATTTAAATTTTGAATTCTGTAGCTCGAGTT
13830096 ATAAATGATTTAGTGACTGCTGCGCGAGTGGACAGCTTT
196 ATAAATGATTTAGTGACTGCTGCGCGAGTGGACAGCTTT
13830135 ATCCTA
1 ATCCTA
13830141 AATAGTGAGA
Statistics
Matches: 234, Mismatches: 6, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
234 234 1.00
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (234 bp):
ATCCTACAATGAGAAAACTTATTTTTAGTGGCAAGAGGTCAGGACAGCCGAGTGGTGAAATAGGG
GAGACTTTAACTAATAAATTGTACTAATTGGCTAAACCGAAAATTCTAAAAAACTTATGGTAAGA
TGATATATAAGCCTAGTTTCAGGGAAAATTTACGGATTTAAATTTTGAATTCTGTAGCTCGAGTT
ATAAATGATTTAGTGACTGCTGCGCGAGTGGACAGCTTT
Found at i:13834802 original size:20 final size:20
Alignment explanation
Indices: 13834765--13834834 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
13834755 CACCATAGTA
*
13834765 CAAACAG-GGACACCGAAGTG
1 CAAACAGAGGA-ATCGAAGTG
* * *
13834785 TATACAGAGGAATTGAAGTG
1 CAAACAGAGGAATCGAAGTG
*
13834805 CAAACAGAGGCATCGAAGTG
1 CAAACAGAGGAATCGAAGTG
*
13834825 CAAAAAGAGG
1 CAAACAGAGG
13834835 CACCAAAGTG
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 37 0.93
21 3 0.08
ACGTcount: A:0.43, C:0.16, G:0.30, T:0.11
Consensus pattern (20 bp):
CAAACAGAGGAATCGAAGTG
Found at i:13834843 original size:20 final size:20
Alignment explanation
Indices: 13834800--13834848 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
13834790 AGAGGAATTG
* * *
13834800 AAGTGCAAACAGAGGCATCG
1 AAGTGCAAAAAGAGGCACCA
13834820 AAGTGCAAAAAGAGGCACCA
1 AAGTGCAAAAAGAGGCACCA
13834840 AAGTG-AAAA
1 AAGTGCAAAA
13834849 TCCCATGCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.49, C:0.16, G:0.27, T:0.08
Consensus pattern (20 bp):
AAGTGCAAAAAGAGGCACCA
Found at i:13842082 original size:21 final size:22
Alignment explanation
Indices: 13842043--13842083 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
13842033 CCAATAAATT
13842043 AATTTAACAAAATTAATTAATC
1 AATTTAACAAAATTAATTAATC
13842065 AATTT-ACATAAA-TAATTAA
1 AATTTAACA-AAATTAATTAA
13842084 ACCCAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (22 bp):
AATTTAACAAAATTAATTAATC
Found at i:13856186 original size:44 final size:45
Alignment explanation
Indices: 13856083--13856555 Score: 465
Period size: 44 Copynumber: 10.7 Consensus size: 45
13856073 AGGCTAAAAA
* * * *
13856083 ATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * * *
13856127 ATAACATATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAG
1 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * * * * *
13856172 AT-GCAGATCTTGTCTTCCCATAATAGTGGCGAAGTAGATTGAAA
1 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * * * *
13856216 ATAACAGATCTTGTCTTCATGTATTGG-GGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * * *
13856260 ATAACAGATCCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAG
1 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * *
13856305 AT-GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * * * * *
13856349 AAAGCATATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * *
13856393 ATAACAGATCATGTCTTCCTATATTGGTAGCGAAGTGGATCGAAG
1 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* *
13856438 AT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * * * * * * *
13856482 AAAGCAAATCTTGTCTTCATTTATTGG-CGTGAAGTGGATCGAAA
1 ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * *
13856526 ATAGCAGATCCTATCTTCTTATATTGGTAG
1 ATAGCAGATCTTGTCTTCCTATATTGGTAG
13856556 TGAGGCAGAC
Statistics
Matches: 345, Mismatches: 77, Indels: 13
0.79 0.18 0.03
Matches are distributed among these distances:
44 238 0.69
45 107 0.31
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (45 bp):
ATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
Found at i:13856318 original size:133 final size:133
Alignment explanation
Indices: 13856085--13856555 Score: 773
Period size: 133 Copynumber: 3.5 Consensus size: 133
13856075 GCTAAAAAAT
*
13856085 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACATATCCTGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
* *
13856150 TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAATAGTGGCGAAGTAGATTGAA
66 TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAATGGTGGCGAAGTAGATCGAA
13856215 -AA
131 GAA
* *
13856217 TAACAGATCTTGTCTTCATGTATTGGGGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
1 -AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
* *
13856282 ATTGGTAGTGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
65 ATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAATGGTGGCGAAGTAGATCGA
13856347 AGAA
130 AGAA
* *
13856351 AGCATATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCATGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
*
13856416 TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAA
66 TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAATGGTGGCGAAGTAGATCGAA
13856481 GAA
131 GAA
* * * * * * *
13856484 AGCAAATCTTGTCTTCATTTATTGGCGTGAAGTGGATCGAAAATAGCAGATCCTATCTTCTTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
13856549 TTGGTAG
66 TTGGTAG
13856556 TGAGGCAGAC
Statistics
Matches: 316, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
133 314 0.99
134 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (133 bp):
AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAATGGTGGCGAAGTAGATCGAA
GAA
Found at i:13856543 original size:89 final size:89
Alignment explanation
Indices: 13856083--13856553 Score: 468
Period size: 89 Copynumber: 5.3 Consensus size: 89
13856073 AGGCTAAAAA
* * * * * *
13856083 ATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAACATATCCTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGA-AACAGATCTTGTCTTCCT
13856147 ATATTGGTAGCGAAGTGGATCGAAG
65 ATATTGGTAGCGAAGTGGATCGAAG
* * * * * *
13856172 AT-GCAGATCTTGTCTTCCCATAATAGTGGCGAAGTAGATTGAAAATAACAGATCTTGTCTTCAT
1 ATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGA-AACAGATCTTGTCTTCCT
* * * *
13856236 GTATTGG-GGTGAAGTAGATCGAAG
65 ATATTGGTAGCGAAGTGGATCGAAG
* * * * * ** *
13856260 ATAACAGATCCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
1 ATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAACAGATCTTGTCTTCCTA
* * *
13856325 TACTGGTGGCGAAGTAGATCGAAG
66 TATTGGTAGCGAAGTGGATCGAAG
* * * * * * *
13856349 AAAGCATATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAACAGATCATGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGA-AACAGATCTTGTCTTCCT
13856413 ATATTGGTAGCGAAGTGGATCGAAG
65 ATATTGGTAGCGAAGTGGATCGAAG
* * *
13856438 AT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAAATCTTGTCTTCAT
1 ATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAA-CAGATCTTGTCTTCCT
* * * *
13856502 TTATTGG-CGTGAAGTGGATCGAAA
65 ATATTGGTAGCGAAGTGGATCGAAG
* * *
13856526 ATAGCAGATCCTATCTTCTTATATTGGT
1 ATAGCAGATCTTGTCTTCCTATATTGGT
13856554 AGTGAGGCAG
Statistics
Matches: 309, Mismatches: 66, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
88 108 0.35
89 201 0.65
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (89 bp):
ATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAACAGATCTTGTCTTCCTA
TATTGGTAGCGAAGTGGATCGAAG
Found at i:13858529 original size:20 final size:20
Alignment explanation
Indices: 13858512--13858565 Score: 54
Period size: 22 Copynumber: 2.6 Consensus size: 20
13858502 ATGAATATTC
13858512 TTTTATATTTATATATATAT
1 TTTTATATTTATATATATAT
* * *
13858532 ATTCGTATATATATATATATGT
1 -TT-TTATATTTATATATATAT
*
13858554 TTTTTTATTTAT
1 TTTTATATTTAT
13858566 TTTCAAAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
20 7 0.27
21 4 0.15
22 15 0.58
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (20 bp):
TTTTATATTTATATATATAT
Found at i:13858622 original size:19 final size:20
Alignment explanation
Indices: 13858580--13858622 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
13858570 AAAAAAAATG
*
13858580 TTTAACTACCTATTTATATT
1 TTTAACTACATATTTATATT
13858600 TTTAAC-ACATATTT-TATT
1 TTTAACTACATATTTATATT
13858618 ATTTA
1 -TTTA
13858623 TGTATATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 11 0.52
20 6 0.29
ACGTcount: A:0.33, C:0.12, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTAACTACATATTTATATT
Found at i:13868460 original size:21 final size:18
Alignment explanation
Indices: 13868434--13868482 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 18
13868424 TTATTAACAT
13868434 AAAAAATTAAAATTTAGACA
1 AAAAAATTAAAATTTA-A-A
* *
13868454 AAGAAAATGAAATTTTAAA
1 AA-AAAATTAAAATTTAAA
13868473 AAAAAATTAA
1 AAAAAATTAA
13868483 GTCTTGATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
18 7 0.28
19 3 0.12
20 3 0.12
21 12 0.48
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.24
Consensus pattern (18 bp):
AAAAAATTAAAATTTAAA
Found at i:13876499 original size:27 final size:28
Alignment explanation
Indices: 13876459--13876734 Score: 297
Period size: 27 Copynumber: 10.2 Consensus size: 28
13876449 ATTAGTGGGC
* ** *
13876459 AAATAACC-GAAATACCCTTGAAGGGCA
1 AAATGACCAGAAATACCCTCAAAGGGTA
13876486 AAATGACCAG-AATACCCTCAAAGGGTA
1 AAATGACCAGAAATACCCTCAAAGGGTA
*
13876513 AAATGA--ATGAAATACCCTCGAAGGGTA
1 AAATGACCA-GAAATACCCTCAAAGGGTA
* *
13876540 AAATGA-TAGAAATACCTTCAAAGGGTA
1 AAATGACCAGAAATACCCTCAAAGGGTA
13876567 AAATGACCA-AAATACCCTCAAAGGGTA
1 AAATGACCAGAAATACCCTCAAAGGGTA
*
13876594 AAATGACC-GAAATACCCTCGAAGGGTA
1 AAATGACCAGAAATACCCTCAAAGGGTA
*
13876621 AAAGGACC-GAAATACCCTCAAAGGGTA
1 AAATGACCAGAAATACCCTCAAAGGGTA
** *
13876648 AAATGA-TTGAAATACCCTCGAAGGGTA
1 AAATGACCAGAAATACCCTCAAAGGGTA
*
13876675 AAATGA-CTGAAATACGCC-CAAAGGGTA
1 AAATGACCAGAAATAC-CCTCAAAGGGTA
* * **
13876702 AAATGA-CTGAAATACCCCCATTGGGTA
1 AAATGACCAGAAATACCCTCAAAGGGTA
13876729 AAATGA
1 AAATGA
13876735 TTGATATACA
Statistics
Matches: 221, Mismatches: 19, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.00
26 3 0.01
27 212 0.96
28 5 0.02
ACGTcount: A:0.44, C:0.19, G:0.20, T:0.17
Consensus pattern (28 bp):
AAATGACCAGAAATACCCTCAAAGGGTA
Found at i:13876606 original size:81 final size:80
Alignment explanation
Indices: 13876467--13876734 Score: 340
Period size: 81 Copynumber: 3.3 Consensus size: 80
13876457 GCAAATAACC
** * * *
13876467 GAAATACCCTTGAAGGGCAAAATGACCAGAATACCCTCAAAGGGTAAAATGAATGAAATACCCTC
1 GAAATACCCTCAAAGGGTAAAATGACCAAAATACCCTCAAAGGGTAAAATGACTGAAATACCCTC
13876532 GAAGGGTAAAATGAT
66 GAAGGGTAAAATGAT
* *
13876547 AGAAATACCTTCAAAGGGTAAAATGACCAAAATACCCTCAAAGGGTAAAATGACCGAAATACCCT
1 -GAAATACCCTCAAAGGGTAAAATGACCAAAATACCCTCAAAGGGTAAAATGACTGAAATACCCT
* *
13876612 CGAAGGGTAAAAGGACC
65 CGAAGGGTAAAATGA-T
*** *
13876629 GAAATACCCTCAAAGGGTAAAATGATTGAAATACCCTCGAAGGGTAAAATGACTGAAATACGCC-
1 GAAATACCCTCAAAGGGTAAAATGACCAAAATACCCTCAAAGGGTAAAATGACTGAAATAC-CCT
*
13876693 CAAAGGGTAAAATGACT
65 CGAAGGGTAAAATGA-T
* **
13876710 GAAATACCCCCATTGGGTAAAATGA
1 GAAATACCCTCAAAGGGTAAAATGA
13876735 TTGATATACA
Statistics
Matches: 164, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
81 162 0.99
82 2 0.01
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.17
Consensus pattern (80 bp):
GAAATACCCTCAAAGGGTAAAATGACCAAAATACCCTCAAAGGGTAAAATGACTGAAATACCCTC
GAAGGGTAAAATGAT
Found at i:13876946 original size:26 final size:26
Alignment explanation
Indices: 13876903--13876953 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
13876893 GCCACATATA
*
13876903 CTATTACTGGCAGCTTTGCTGCGATT
1 CTATTACTAGCAGCTTTGCTGCGATT
* * *
13876929 CTATTACTATCAGTTTTGTTGCGAT
1 CTATTACTAGCAGCTTTGCTGCGAT
13876954 ATTGTTGTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.43
Consensus pattern (26 bp):
CTATTACTAGCAGCTTTGCTGCGATT
Found at i:13880044 original size:27 final size:26
Alignment explanation
Indices: 13880005--13880252 Score: 230
Period size: 27 Copynumber: 9.3 Consensus size: 26
13879995 ATTCATGGGC
13880005 AAATGACCGAAATACACCCGAAGGGTA
1 AAATGACCGAAATAC-CCCGAAGGGTA
** **
13880032 AAATGACATAAATACCCTTAAAGGGTA
1 AAATGACCGAAATACCC-CGAAGGGTA
* * *
13880059 AAACGACTGAAATACCCCCAAAGGGTA
1 AAATGACCGAAATA-CCCCGAAGGGTA
* * * *
13880086 AAATGA-CTAGAATTCCCTTGAAAGGTA
1 AAATGACCGA-AATACCC-CGAAGGGTA
*
13880113 AAATGACCGAAATACCCCCAAGGGTA
1 AAATGACCGAAATACCCCGAAGGGTA
* * *
13880139 AAATGATCAAAATACCCCGGAAGGTTA
1 AAATGACCGAAATACCCC-GAAGGGTA
*
13880166 AAATGACCGAAATACCCTCAAAGGGTA
1 AAATGACCGAAATACCC-CGAAGGGTA
**
13880193 AAATGATTGAAATACCCCTGAAGGGTA
1 AAATGACCGAAATACCCC-GAAGGGTA
*
13880220 AAATGACCGAAATATCCC-ATAGGGTA
1 AAATGACCGAAATACCCCGA-AGGGTA
13880246 AAATGAC
1 AAATGAC
13880253 TGTTATACCC
Statistics
Matches: 178, Mismatches: 34, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.01
26 42 0.24
27 129 0.72
28 6 0.03
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.17
Consensus pattern (26 bp):
AAATGACCGAAATACCCCGAAGGGTA
Found at i:13880104 original size:54 final size:54
Alignment explanation
Indices: 13880005--13880253 Score: 276
Period size: 54 Copynumber: 4.6 Consensus size: 54
13879995 ATTCATGGGC
* * *
13880005 AAATGACCGAAATACACCCGAAGGGTAAAATGACATA-AATACCCTTAAAGGGTA
1 AAATGACCGAAATACCCCCAAAGGGTAAAATGAC-TAGAATACCCCTAAAGGGTA
* * * *
13880059 AAACGACTGAAATACCCCCAAAGGGTAAAATGACTAGAATTCCCTTGAAA-GGTA
1 AAATGACCGAAATACCCCCAAAGGGTAAAATGACTAGAATACCCCT-AAAGGGTA
* ** *
13880113 AAATGACCGAAATACCCCC-AAGGGTAAAATGA-TCAAAATACCCCGGAAGGTTA
1 AAATGACCGAAATACCCCCAAAGGGTAAAATGACT-AGAATACCCCTAAAGGGTA
* * *
13880166 AAATGACCGAAATACCCTCAAAGGGTAAAATGA-TTGAAATACCCCTGAAGGGTA
1 AAATGACCGAAATACCCCCAAAGGGTAAAATGACTAG-AATACCCCTAAAGGGTA
* *
13880220 AAATGACCGAAATA-TCCCATAGGGTAAAATGACT
1 AAATGACCGAAATACCCCCAAAGGGTAAAATGACT
13880254 GTTATACCCC
Statistics
Matches: 167, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
52 3 0.02
53 58 0.35
54 103 0.62
55 3 0.02
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.18
Consensus pattern (54 bp):
AAATGACCGAAATACCCCCAAAGGGTAAAATGACTAGAATACCCCTAAAGGGTA
Found at i:13880192 original size:107 final size:107
Alignment explanation
Indices: 13880005--13880252 Score: 322
Period size: 107 Copynumber: 2.3 Consensus size: 107
13879995 ATTCATGGGC
* ** *
13880005 AAATGACCGAAATACACCCGAAGGGTAAAATGACATAAATACCCTTAAAGGGTAAAACGACTGAA
1 AAATGACCGAAATAC-CCCCAAGGGTAAAATGACATAAATACCCCGAAAGGGTAAAACGACCGAA
* *
13880070 ATACCCCCAAAGGGTAAAATGACTAG-AATTCCCTTGAAAGGTA
65 ATACCCCCAAAGGGTAAAATGA-TAGAAATACCCCTGAAAGGTA
* * *
13880113 AAATGACCGAAATACCCCCAAGGGTAAAATGATCA-AAATACCCCGGAAGGTTAAAATGACCGAA
1 AAATGACCGAAATACCCCCAAGGGTAAAATGA-CATAAATACCCCGAAAGGGTAAAACGACCGAA
* * *
13880177 ATACCCTCAAAGGGTAAAATGATTGAAATACCCCTGAAGGGTA
65 ATACCCCCAAAGGGTAAAATGATAGAAATACCCCTGAAAGGTA
*
13880220 AAATGACCGAAATA-TCCCATAGGGTAAAATGAC
1 AAATGACCGAAATACCCCCA-AGGGTAAAATGAC
13880253 TGTTATACCC
Statistics
Matches: 124, Mismatches: 13, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
106 7 0.06
107 100 0.81
108 17 0.14
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.17
Consensus pattern (107 bp):
AAATGACCGAAATACCCCCAAGGGTAAAATGACATAAATACCCCGAAAGGGTAAAACGACCGAAA
TACCCCCAAAGGGTAAAATGATAGAAATACCCCTGAAAGGTA
Found at i:13880467 original size:26 final size:26
Alignment explanation
Indices: 13880438--13880500 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
13880428 ACTGTTATTG
*
13880438 GCAGCTTTGCTGCGTTACTATTACTA
1 GCAGCTTTGCTGCGTCACTATTACTA
* *
13880464 GCAGCTTTGTTGTGTCACTATTACTA
1 GCAGCTTTGCTGCGTCACTATTACTA
13880490 GCAGCTTTGCT
1 GCAGCTTTGCT
13880501 ACGATATTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (26 bp):
GCAGCTTTGCTGCGTCACTATTACTA
Found at i:13880691 original size:33 final size:32
Alignment explanation
Indices: 13880606--13880691 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 32
13880596 ATTATTGCAT
* *
13880606 TGCACTGATTACTGTATTGGGCTAAAGTCCGCA
1 TGCACTGA-TACTGTATAGGGCTAAAGCCCGCA
* * *
13880639 --CATTGTTACTGTA-ATGGGCTAAGGCCCGCA
1 TGCACTGATACTGTATA-GGGCTAAAGCCCGCA
13880669 CTGCACTGATACTGTATAGGGCT
1 -TGCACTGATACTGTATAGGGCT
13880692 TTGGCGCAGA
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
30 20 0.49
31 4 0.10
33 16 0.39
34 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (32 bp):
TGCACTGATACTGTATAGGGCTAAAGCCCGCA
Found at i:13882632 original size:60 final size:60
Alignment explanation
Indices: 13882559--13882672 Score: 210
Period size: 60 Copynumber: 1.9 Consensus size: 60
13882549 TGTTGTTAAC
13882559 GATAGCTTGTAACATGCATTTTATCTCTGTTTAAGCTCCACAACGAGGAGATGTGTCAAT
1 GATAGCTTGTAACATGCATTTTATCTCTGTTTAAGCTCCACAACGAGGAGATGTGTCAAT
* *
13882619 GATAGCTTGTAACATGCATTTTATCTTTGTTTTAGCTCCACAACGAGGAGATGT
1 GATAGCTTGTAACATGCATTTTATCTCTGTTTAAGCTCCACAACGAGGAGATGT
13882673 CATCTTTAAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (60 bp):
GATAGCTTGTAACATGCATTTTATCTCTGTTTAAGCTCCACAACGAGGAGATGTGTCAAT
Found at i:13885021 original size:50 final size:50
Alignment explanation
Indices: 13884915--13885010 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 50
13884905 TTATTAAGGT
* * * * *
13884915 TATGAGAGGTCCAACGTAAGACCATGTCTGGGACATGGCGTTGGCATCAA
1 TATGAGAGGTCCAACGTAAGACCATATCTAGGACATAGCATGGGCATCAA
* **
13884965 GATGAGAGGTCCCCCGTAAGACCATATCTAGGACATAGCATGGGCA
1 TATGAGAGGTCCAACGTAAGACCATATCTAGGACATAGCATGGGCA
13885011 CTGATATGAG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 38 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (50 bp):
TATGAGAGGTCCAACGTAAGACCATATCTAGGACATAGCATGGGCATCAA
Found at i:13885337 original size:20 final size:20
Alignment explanation
Indices: 13885312--13885350 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
13885302 TGAGTTTTTT
13885312 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAA-CAGAGTAAGTAAAC
*
13885332 AAGTAATAGAGTAAGTAAA
1 AAGTAACAGAGTAAGTAAA
13885351 GAAGAAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.18
Consensus pattern (20 bp):
AAGTAACAGAGTAAGTAAAC
Found at i:13889621 original size:10 final size:10
Alignment explanation
Indices: 13889606--13889631 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
13889596 CTCAACGACC
13889606 TTAAATGTTA
1 TTAAATGTTA
13889616 TTAAATGTTA
1 TTAAATGTTA
13889626 TTAAAT
1 TTAAAT
13889632 TAAATAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (10 bp):
TTAAATGTTA
Found at i:13891530 original size:13 final size:13
Alignment explanation
Indices: 13891512--13891556 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
13891502 GAGCACACGT
*
13891512 AAAACATATTTTG
1 AAAACATATCTTG
*
13891525 AAAACATAACTTG
1 AAAACATATCTTG
*
13891538 GAAACATATCTTG
1 AAAACATATCTTG
13891551 AAAACA
1 AAAACA
13891557 GAATATCAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.51, C:0.13, G:0.09, T:0.27
Consensus pattern (13 bp):
AAAACATATCTTG
Found at i:13901934 original size:54 final size:51
Alignment explanation
Indices: 13901865--13902008 Score: 139
Period size: 54 Copynumber: 2.7 Consensus size: 51
13901855 CCAAATATTT
*
13901865 GTAAAATGGTCGTAATACCCCTGTAGGGTAAAATGACCGAAAA-ACCCCCT-TAGG
1 GTAAAAT-GTCGTAATACCCCTG-AGGGT-AAATGACC-AAAATA-CCCCTATAAG
* *
13901919 GTAAAATGTCTGTAATACCCCCTAAAGGTTAAATGACCAAAATACCCCTATAAG
1 GTAAAATGTC-GTAATA-CCCCT-GAGGGTAAATGACCAAAATACCCCTATAAG
* *
13901973 GTAAAATGACCGTAATGCCCCTAGAGGGTAAATGAC
1 GTAAAATG-TCGTAATACCCCT-GAGGGTAAATGAC
13902009 TATTTTGCCC
Statistics
Matches: 77, Mismatches: 7, Indels: 13
0.79 0.07 0.13
Matches are distributed among these distances:
53 29 0.38
54 38 0.49
55 10 0.13
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.22
Consensus pattern (51 bp):
GTAAAATGTCGTAATACCCCTGAGGGTAAATGACCAAAATACCCCTATAAG
Found at i:13901993 original size:27 final size:27
Alignment explanation
Indices: 13901865--13902008 Score: 123
Period size: 27 Copynumber: 5.4 Consensus size: 27
13901855 CCAAATATTT
** *
13901865 GTAAAATGGTCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* *
13901892 GTAAAATGACCGAAAAACCCCCT-TAGG
1 GTAAAATGACCGTAATA-CCCCTATAGG
* * *
13901919 GTAAAATGTCTGTAATACCCCCTA-AAG
1 GTAAAATGACCGTAATA-CCCCTATAGG
* ** *
13901946 GTTAAATGACCAAAATACCCCTATAAG
1 GTAAAATGACCGTAATACCCCTATAGG
* *
13901973 GTAAAATGACCGTAATGCCCCTAGAGG
1 GTAAAATGACCGTAATACCCCTATAGG
13902000 GT-AAATGAC
1 GTAAAATGAC
13902009 TATTTTGCCC
Statistics
Matches: 94, Mismatches: 20, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
26 13 0.14
27 76 0.81
28 5 0.05
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTATAGG
Found at i:13902064 original size:13 final size:13
Alignment explanation
Indices: 13902046--13902087 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
13902036 TATTTGTCCG
*
13902046 TGATTTATATGAC
1 TGATTTGTATGAC
*
13902059 TGATTTGTCTG--
1 TGATTTGTATGAC
13902070 TGATTTGTATGAC
1 TGATTTGTATGAC
13902083 TGATT
1 TGATT
13902088 CTAAGCATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
11 10 0.42
13 14 0.58
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.50
Consensus pattern (13 bp):
TGATTTGTATGAC
Found at i:13902064 original size:24 final size:24
Alignment explanation
Indices: 13902037--13902087 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
13902027 TAAATGATTT
13902037 ATTTGTCCGTGATTTATATGACTG
1 ATTTGTCCGTGATTTATATGACTG
* *
13902061 ATTTGTCTGTGATTTGTATGACTG
1 ATTTGTCCGTGATTTATATGACTG
13902085 ATT
1 ATT
13902088 CTAAGCATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.10, G:0.22, T:0.49
Consensus pattern (24 bp):
ATTTGTCCGTGATTTATATGACTG
Found at i:13902673 original size:25 final size:25
Alignment explanation
Indices: 13902643--13902693 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
13902633 TTTCGTCAGT
13902643 TAGGGGTAAAATGGTAATTTTACCC
1 TAGGGGTAAAATGGTAATTTTACCC
*** *
13902668 TAGGGGTATTTTGGTCATTTTACCC
1 TAGGGGTAAAATGGTAATTTTACCC
13902693 T
1 T
13902694 TCGAGGGTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.39
Consensus pattern (25 bp):
TAGGGGTAAAATGGTAATTTTACCC
Found at i:13915759 original size:41 final size:42
Alignment explanation
Indices: 13915641--13915760 Score: 154
Period size: 41 Copynumber: 2.9 Consensus size: 42
13915631 AATGGAAATT
* *
13915641 TTCAAACTTAAAGTCTAGCAGGCTTAAGGCCGGT-AATATAA
1 TTCAAACTTTAAGTCTAGCAGGCTTAATGCCGGTGAATATAA
* * *
13915682 TTCAGACTTTATGTCCAGCAGGCTTAATGCCGGTGAA-ATAA
1 TTCAAACTTTAAGTCTAGCAGGCTTAATGCCGGTGAATATAA
* * *
13915723 TTCAAACTTTAAGTCTAGCAGGCTCATTGCCAGTGAAT
1 TTCAAACTTTAAGTCTAGCAGGCTTAATGCCGGTGAAT
13915761 TGAATCAGGT
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 64 0.97
42 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (42 bp):
TTCAAACTTTAAGTCTAGCAGGCTTAATGCCGGTGAATATAA
Found at i:13927439 original size:168 final size:168
Alignment explanation
Indices: 13927151--13927473 Score: 438
Period size: 168 Copynumber: 1.9 Consensus size: 168
13927141 CGAACTTGGT
* *
13927151 CATCTTGGGAATCTAGATATAGTGATACCCATACTTGGTATAGCGATATCACTGGAGTTGGCCTC
1 CATCTTGGGAATCTAGATATAGTGATACCCATACTTGGTATAGCGATATCACTGCAGTTGGCCAC
* * * *
13927216 AATTCTCTTCACTTTAGGACTATCAGGGGTATCATCACTTCTATATTTCAGTATCACGATACCCC
66 AATTCTCTTCACTTTAAGACTATCAGGGGTATCAACACTTCTAGATTTCAGTATCACAATACCCC
** *
13927281 CTTCTGAGTGATGTTTTCCTCAAGTCCTCAAGCTTGAA
131 CTTAGGAGTAATGTTTTCCTCAAGTCCTCAAGCTTGAA
* * *
13927319 CATCTTTGGAATCTCGATATCA-TGATACCCATACTTGGTATTGCGATATCACTAGCA-TTGGCC
1 CATCTTGGGAATCTAGATAT-AGTGATACCCATACTTGGTATAGCGATATCACT-GCAGTTGGCC
* * *
13927382 ACAATTCTCTTCACTTTAATACTGTCAGGGGTATCAAGACTT-TCAGGATTT-AGTATCACAATA
64 ACAATTCTCTTCACTTTAAGACTATCAGGGGTATCAACACTTCT-A-GATTTCAGTATCACAATA
*
13927445 CCCCCTTAGGAGTAATGTTTTCTTCAAGT
127 CCCCCTTAGGAGTAATGTTTTCCTCAAGT
13927474 TCGTGCTATT
Statistics
Matches: 135, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
167 1 0.01
168 127 0.94
169 7 0.05
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (168 bp):
CATCTTGGGAATCTAGATATAGTGATACCCATACTTGGTATAGCGATATCACTGCAGTTGGCCAC
AATTCTCTTCACTTTAAGACTATCAGGGGTATCAACACTTCTAGATTTCAGTATCACAATACCCC
CTTAGGAGTAATGTTTTCCTCAAGTCCTCAAGCTTGAA
Found at i:13940404 original size:13 final size:14
Alignment explanation
Indices: 13940381--13940411 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
13940371 CATGATTGCC
13940381 AAATATTTAAAAAA
1 AAATATTTAAAAAA
13940395 AAAT-TTTAAAAAA
1 AAATATTTAAAAAA
13940408 AAAT
1 AAAT
13940412 GATGATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAATATTTAAAAAA
Found at i:13940860 original size:25 final size:26
Alignment explanation
Indices: 13940814--13940875 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 26
13940804 TAAACATATG
13940814 AATTATAAAACATGAAAATATA-AAT
1 AATTATAAAACATGAAAATATATAAT
* **
13940839 AATTATAAAATATGAATGTATATAAT
1 AATTATAAAACATGAAAATATATAAT
13940865 ATATATATAAA
1 A-AT-TATAAA
13940876 CTATATACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.61
26 4 0.13
27 2 0.06
28 6 0.19
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.34
Consensus pattern (26 bp):
AATTATAAAACATGAAAATATATAAT
Found at i:13941057 original size:13 final size:14
Alignment explanation
Indices: 13941016--13941057 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
13941006 TAATTAACAG
13941016 AAATAAAC-AATAA
1 AAATAAACTAATAA
*
13941029 AAATAAAATAATAA
1 AAATAAACTAATAA
13941043 AAATAAACTAA-AA
1 AAATAAACTAATAA
13941056 AA
1 AA
13941058 CAAATGAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.17
Consensus pattern (14 bp):
AAATAAACTAATAA
Found at i:13942772 original size:132 final size:131
Alignment explanation
Indices: 13942533--13943265 Score: 1137
Period size: 132 Copynumber: 5.6 Consensus size: 131
13942523 CATCAGTCTA
* * * * * * * * *
13942533 CTCCACTACTGCTTAGGGAGATAAGATCTGCTATTCTTCGATCGATTCCACTGTCGACCAAGGAG
1 CTCCACTAATGCCTAGGGAGATAAGATCTG-AAATCTTCAATCTATTCCACTGCCAACCAGGGAG
13942598 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACCCCAGGGAGGTAAAATCTGCCATCTTCGAT
65 ATAGAATTACTGGCTTCAATGTACTCCACTGTAA-CCCAGGGAGGTAAAATCTGCCATCTTCGAT
13942663 CTG
129 CTG
* * *
13942666 CTCCACTAATGCTTAGGGAAATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGGGA
1 CTCCACTAATGCCTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGA
*
13942731 TAGAATTACTGGCTTTAATGTACTCCACTGTAACCCTAGGGAGGTAAAAT-TCGCCATCTTCGAT
66 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCC-AGGGAGGTAAAATCT-GCCATCTTCGAT
13942795 CTG
129 CTG
** * ** * *
13942798 CTCCACTACCGCTTAAAGAGATAAGATCTGAAATCTTCAATCTATTCCGCTGCCAACTAGGGAGA
1 CTCCACTAATGCCTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGA
*
13942863 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
66 TAGAATTACTGGCTTCAATGTACTCCACTGTAACC-CAGGGAGGTAAAATCTGCCATCTTCGATC
*
13942928 TA
130 TG
* * * *
13942930 CTCTACTAATGCCTAAGGAGATAAGATCTGAAATCTTCAATCTATTCTACTGCCAACCAGAGAGA
1 CTCCACTAATGCCTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGA
13942995 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATC
66 TAGAATTACTGGCTTCAATGTACTCCACTGTAACC-CAGGGAGGTAAAATCTGCCATCTTCGATC
13943060 TG
130 TG
*
13943062 CTCGACTAATGCCTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGA
1 CTCCACTAATGCCTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGA
13943127 TAGAATTAC-GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATC
66 TAGAATTACTGGCTTCAATGTACTCCACTGTAACC-CAGGGAGGTAAAATCTGCCATCTTCGATC
13943191 TG
130 TG
*
13943193 CTCCACTAATGCCTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACTAGGGAGA
1 CTCCACTAATGCCTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGA
13943258 TAGAATTA
66 TAGAATTA
13943266 GTATCTTCGA
Statistics
Matches: 556, Mismatches: 40, Indels: 10
0.92 0.07 0.02
Matches are distributed among these distances:
131 132 0.24
132 394 0.71
133 30 0.05
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (131 bp):
CTCCACTAATGCCTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGA
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCCAGGGAGGTAAAATCTGCCATCTTCGATCT
G
Found at i:13943124 original size:44 final size:44
Alignment explanation
Indices: 13942611--13943259 Score: 168
Period size: 44 Copynumber: 14.8 Consensus size: 44
13942601 GAATTACTGG
* * * * **
13942611 CTTCAATGTACTCCACTGTAACCCCAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCAA-CCCAGGGAGATAAGATCTGAAAT
* * ** *
13942656 CTTCGATCTGCTCCACT--AATGCTTAGGGAAATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGCAA--CCCAGGGAGATAAGATCTGAAAT
* * *
13942700 CTTCAATCTATTCCACTGCCAA-CCAGGGGGAT-AGAATTACTG---G
1 CTTCAATCTACTCCACTG-CAACCCAGGGAGATAAG-A-T-CTGAAAT
* * * * * **
13942743 CTTTAATGTACTCCACTGTAACCCTAGGGAGGTAAAAT-TCGCCAT
1 CTTCAATCTACTCCACTGCAACCC-AGGGAGATAAGATCT-GAAAT
* * * ** ** **
13942788 CTTCGATCTGCTCCACTACCGCTTAAAGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGCAACCCAGGGAGATAAGATCTGAAAT
* * * *
13942832 CTTCAATCTATTCCGCTGCCAA-CTAGGGAGAT-AGAATTACTG---G
1 CTTCAATCTACTCCACTG-CAACCCAGGGAGATAAG-A-T-CTGAAAT
* * * * **
13942875 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCAACC-CAGGGAGATAAGATCTGAAAT
** * * *
13942920 CTTTGATCTACTCTACT--AATGCCTAAGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGCAA--CCCAGGGAGATAAGATCTGAAAT
* * * *
13942964 CTTCAATCTATTCTACTGCCAA-CCAGAGAGAT-AGAATTACTG---G
1 CTTCAATCTACTCCACTG-CAACCCAGGGAGATAAG-A-T-CTGAAAT
* * * * **
13943007 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCAACC-CAGGGAGATAAGATCTGAAAT
* * * *
13943052 CTTCGATCTGCTCGACT--AATGCCTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGCAA--CCCAGGGAGATAAGATCTGAAAT
* ***
13943096 CTTCAATCTATTCCACTGCCAA-CCAGGGAGAT-AGAAT-T-ACGG
1 CTTCAATCTACTCCACTG-CAACCCAGGGAGATAAG-ATCTGAAAT
* * * * **
13943138 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCAACC-CAGGGAGATAAGATCTGAAAT
* * *
13943183 CTTCGATCTGCTCCACT--AATGCCTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTGCAA--CCCAGGGAGATAAGATCTGAAAT
* *
13943227 CTTCAATCTATTCCACTGCCAA-CTAGGGAGATA
1 CTTCAATCTACTCCACTG-CAACCCAGGGAGATA
13943260 GAATTAGTAT
Statistics
Matches: 426, Mismatches: 123, Indels: 111
0.65 0.19 0.17
Matches are distributed among these distances:
41 3 0.01
42 31 0.07
43 79 0.19
44 213 0.50
45 83 0.19
46 9 0.02
47 8 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCAACCCAGGGAGATAAGATCTGAAAT
Found at i:13945141 original size:16 final size:16
Alignment explanation
Indices: 13945120--13945171 Score: 52
Period size: 19 Copynumber: 3.1 Consensus size: 16
13945110 CCCAGCGGGG
13945120 TTCTTTTTCTTTTTTT
1 TTCTTTTTCTTTTTTT
13945136 TTCTTTTTCCCCTTTTTTT
1 TTCTTTTT---CTTTTTTT
* *
13945155 GT-TTTTTGTTTTTTT
1 TTCTTTTTCTTTTTTT
13945170 TT
1 TT
13945172 TGTTTTCTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
15 8 0.27
16 8 0.27
18 5 0.17
19 9 0.30
ACGTcount: A:0.00, C:0.13, G:0.04, T:0.83
Consensus pattern (16 bp):
TTCTTTTTCTTTTTTT
Found at i:13949453 original size:25 final size:26
Alignment explanation
Indices: 13949407--13949458 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
13949397 TAAACATATG
13949407 AATTATAAAACATGAAAATATA-AAT
1 AATTATAAAACATGAAAATATATAAT
* **
13949432 AATTATAAAATATGAATGTATATAAT
1 AATTATAAAACATGAAAATATATAAT
13949458 A
1 A
13949459 TATATATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (26 bp):
AATTATAAAACATGAAAATATATAAT
Found at i:13954840 original size:48 final size:47
Alignment explanation
Indices: 13954759--13954918 Score: 194
Period size: 48 Copynumber: 3.3 Consensus size: 47
13954749 AAGCTATTTA
** *
13954759 TCGTATAGGTTTAACCTTGACAAGTAACCAGGCACTATTATTCATTAT
1 TCGTATAGGTTTAACCTAAACAGGT-ACCAGGCACTATTATTCATTAT
*
13954807 TTGTATAGGTTTAACCTAAACAGGTACCTAGGCACTATTATTCATTAT
1 TCGTATAGGTTTAACCTAAACAGGTACC-AGGCACTATTATTCATTAT
* * ** *
13954855 TCGTGTAGGTTTAACCCAAATCAGAAACCAAGCACTATTATTCATTAT
1 TCGTATAGGTTTAACCTAAA-CAGGTACCAGGCACTATTATTCATTAT
* *
13954903 TCATGTAGGTTTAACC
1 TCGTATAGGTTTAACC
13954919 CAAATGAGTA
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
47 3 0.03
48 90 0.91
49 6 0.06
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (47 bp):
TCGTATAGGTTTAACCTAAACAGGTACCAGGCACTATTATTCATTAT
Found at i:13954919 original size:48 final size:48
Alignment explanation
Indices: 13954784--13954933 Score: 203
Period size: 48 Copynumber: 3.1 Consensus size: 48
13954774 CTTGACAAGT
* * * *
13954784 AACCAGGCACTATTATTCATTATTTGTATAGGTTTAACCTAAA-CAGG
1 AACCAGGCACTATTATTCATTATTCGTGTAGGTTTAACCCAAATCAGA
*
13954831 TACCTAGGCACTATTATTCATTATTCGTGTAGGTTTAACCCAAATCAGA
1 AACC-AGGCACTATTATTCATTATTCGTGTAGGTTTAACCCAAATCAGA
* * * *
13954880 AACCAAGCACTATTATTCATTATTCATGTAGGTTTAACCCAAATGAGT
1 AACCAGGCACTATTATTCATTATTCGTGTAGGTTTAACCCAAATCAGA
13954928 AACCAG
1 AACCAG
13954934 ACATTATTTT
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
47 3 0.03
48 81 0.90
49 6 0.07
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (48 bp):
AACCAGGCACTATTATTCATTATTCGTGTAGGTTTAACCCAAATCAGA
Found at i:13955745 original size:17 final size:17
Alignment explanation
Indices: 13955723--13955760 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
13955713 TTAAAAGTTA
13955723 GTTA-TTTATTTTTAATT
1 GTTATTTTA-TTTTAATT
13955740 GTTATTTTATTTTAATT
1 GTTATTTTATTTTAATT
13955757 -TTAT
1 GTTAT
13955761 AAAACTAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 4 0.20
17 12 0.60
18 4 0.20
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (17 bp):
GTTATTTTATTTTAATT
Found at i:13964626 original size:25 final size:24
Alignment explanation
Indices: 13964596--13964643 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
13964586 AAAATATCTT
13964596 AAATTTTCAAAAAAA-TATATAAAAC
1 AAATTTT-AAAAAAATTAT-TAAAAC
13964621 AAATTTTAAAAAAATTATTAAAA
1 AAATTTTAAAAAAATTATTAAAA
13964644 TTACATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (24 bp):
AAATTTTAAAAAAATTATTAAAAC
Found at i:13965788 original size:14 final size:14
Alignment explanation
Indices: 13965769--13965854 Score: 84
Period size: 14 Copynumber: 6.2 Consensus size: 14
13965759 CTCAATCATA
*
13965769 AATCCTAAATTCTC
1 AATCCTCAATTCTC
*
13965783 AATCCTCAATTTTC
1 AATCCTCAATTCTC
*
13965797 AATCCTCAATCCTC
1 AATCCTCAATTCTC
* * *
13965811 -ATCCCCAATTTTT
1 AATCCTCAATTCTC
*
13965824 AATCCTCAATCCTC
1 AATCCTCAATTCTC
* *
13965838 AATCATTAATTCTC
1 AATCCTCAATTCTC
13965852 AAT
1 AAT
13965855 TTTCAATTAT
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
13 9 0.16
14 47 0.84
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.37
Consensus pattern (14 bp):
AATCCTCAATTCTC
Found at i:13965790 original size:7 final size:7
Alignment explanation
Indices: 13965752--13965841 Score: 74
Period size: 7 Copynumber: 13.0 Consensus size: 7
13965742 TTCTTTTCAA
*
13965752 CTCAATA
1 CTCAATC
13965759 CTCAATC
1 CTCAATC
* *
13965766 ATAAATC
1 CTCAATC
* *
13965773 CTAAATT
1 CTCAATC
13965780 CTCAATC
1 CTCAATC
*
13965787 CTCAATT
1 CTCAATC
*
13965794 TTCAATC
1 CTCAATC
13965801 CTCAATC
1 CTCAATC
13965808 CTC-ATC
1 CTCAATC
* *
13965814 CCCAATT
1 CTCAATC
* *
13965821 TTTAATC
1 CTCAATC
13965828 CTCAATC
1 CTCAATC
13965835 CTCAATC
1 CTCAATC
13965842 ATTAATTCTC
Statistics
Matches: 63, Mismatches: 19, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
6 5 0.08
7 58 0.92
ACGTcount: A:0.32, C:0.33, G:0.00, T:0.34
Consensus pattern (7 bp):
CTCAATC
Found at i:13965821 original size:27 final size:27
Alignment explanation
Indices: 13965769--13965838 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
13965759 CTCAATCATA
* * *
13965769 AATCCTAAATTCTCAATCCTCAATTTTC
1 AATCCTCAATCCTC-ATCCCCAATTTTC
*
13965797 AATCCTCAATCCTCATCCCCAATTTTT
1 AATCCTCAATCCTCATCCCCAATTTTC
13965824 AATCCTCAATCCTCA
1 AATCCTCAATCCTCA
13965839 ATCATTAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 26 0.68
28 12 0.32
ACGTcount: A:0.30, C:0.34, G:0.00, T:0.36
Consensus pattern (27 bp):
AATCCTCAATCCTCATCCCCAATTTTC
Found at i:13965840 original size:21 final size:21
Alignment explanation
Indices: 13965804--13965854 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
13965794 TTCAATCCTC
**
13965804 AATCCTC-ATCCCCAATTTTT
1 AATCCTCAATCCCCAATCATT
*
13965824 AATCCTCAATCCTCAATCATT
1 AATCCTCAATCCCCAATCATT
*
13965845 AATTCTCAAT
1 AATCCTCAAT
13965855 TTTCAATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.37
Consensus pattern (21 bp):
AATCCTCAATCCCCAATCATT
Found at i:13965922 original size:20 final size:20
Alignment explanation
Indices: 13965884--13965922 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
13965874 CATTTTCTAA
*
13965884 ATTTTATTCTCTTTGATTTT
1 ATTTTATTCTCTTTCATTTT
13965904 ATTTTATTC-CTTATCATTT
1 ATTTTATTCTCTT-TCATTT
13965923 GTAAAATGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.18, C:0.13, G:0.03, T:0.67
Consensus pattern (20 bp):
ATTTTATTCTCTTTCATTTT
Found at i:13966579 original size:22 final size:22
Alignment explanation
Indices: 13966554--13966625 Score: 117
Period size: 22 Copynumber: 3.3 Consensus size: 22
13966544 AGTCTAAACC
13966554 CTCATGGCTAACGTACTAAGCT
1 CTCATGGCTAACGTACTAAGCT
13966576 CTCATGGCTAACGTACTAAGCT
1 CTCATGGCTAACGTACTAAGCT
** *
13966598 CTCATGTTTCACGTACTAAGCT
1 CTCATGGCTAACGTACTAAGCT
13966620 CTCATG
1 CTCATG
13966626 TTTGAACAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.31
Consensus pattern (22 bp):
CTCATGGCTAACGTACTAAGCT
Found at i:13971141 original size:19 final size:19
Alignment explanation
Indices: 13971113--13971152 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
13971103 TATTTTCAAG
*
13971113 AATTTAATTAT-GAAATAT
1 AATTTAATTATAGAAAAAT
13971131 AATTGTAATTATAGAAAAAT
1 AATT-TAATTATAGAAAAAT
13971151 AA
1 AA
13971153 AAATAAACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 7 0.37
20 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (19 bp):
AATTTAATTATAGAAAAAT
Found at i:13974229 original size:21 final size:20
Alignment explanation
Indices: 13974205--13974255 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
13974195 ATTTATAACA
*
13974205 TATTCAATTCTCATCACTTGC
1 TATTCAAATCTCAT-ACTTGC
*
13974226 TATTTCAAATCTCATACTTTC
1 TA-TTCAAATCTCATACTTGC
*
13974247 TATACAAAT
1 TATTCAAAT
13974256 AGCTTTTCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 6 0.23
21 9 0.35
22 11 0.42
ACGTcount: A:0.31, C:0.24, G:0.02, T:0.43
Consensus pattern (20 bp):
TATTCAAATCTCATACTTGC
Found at i:13974232 original size:22 final size:21
Alignment explanation
Indices: 13974207--13974249 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
13974197 TTATAACATA
*
13974207 TTCAATTCTCATCACTTGCTAT
1 TTCAAATCTCAT-ACTTGCTAT
*
13974229 TTCAAATCTCATACTTTCTAT
1 TTCAAATCTCATACTTGCTAT
13974250 ACAAATAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.26, C:0.26, G:0.02, T:0.47
Consensus pattern (21 bp):
TTCAAATCTCATACTTGCTAT
Found at i:13974536 original size:41 final size:40
Alignment explanation
Indices: 13974423--13974549 Score: 134
Period size: 37 Copynumber: 3.2 Consensus size: 40
13974413 GTACCTAGTA
* *
13974423 CCTCATCGGATAATTCGAAGTAATAAATTGACACCCAGTG
1 CCTCATCGAATAATCCGAAGTAATAAATTGACACCCAGTG
* ** * * *
13974463 TCTCATCGGCTAAACCGAAG---TAAATGGGCACCCAGTG
1 CCTCATCGAATAATCCGAAGTAATAAATTGACACCCAGTG
13974500 CCTCATCGAATTAATCCGAAGTAATAAATTGACACCCAGTG
1 CCTCATCGAA-TAATCCGAAGTAATAAATTGACACCCAGTG
* *
13974541 TCTTATCGA
1 CCTCATCGA
13974550 CTCAAAGTCG
Statistics
Matches: 69, Mismatches: 14, Indels: 7
0.77 0.16 0.08
Matches are distributed among these distances:
37 22 0.32
38 9 0.13
40 16 0.23
41 22 0.32
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (40 bp):
CCTCATCGAATAATCCGAAGTAATAAATTGACACCCAGTG
Found at i:13975419 original size:21 final size:21
Alignment explanation
Indices: 13975395--13975457 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 21
13975385 GAAACCCTAA
13975395 CTTTTCTCCTTCTTTCTTTCT
1 CTTTTCTCCTTCTTTCTTTCT
*
13975416 CTTTCTCTTTCCTTTCTTTCCTTCT
1 CTTT-TC--TCC-TTCTTTCTTTCT
13975441 CTATTT-TCCTTCTTTCT
1 CT-TTTCTCCTTCTTTCT
13975458 CTCCTTCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
21 11 0.31
22 5 0.14
24 3 0.09
25 14 0.40
26 2 0.06
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (21 bp):
CTTTTCTCCTTCTTTCTTTCT
Found at i:13975455 original size:25 final size:25
Alignment explanation
Indices: 13975404--13975471 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
13975394 ACTTTTCTCC
* *
13975404 TTCTTTCTTTCTCTTTCTCTTTCCT
1 TTCTTTCCTTCTCTTTCTCCTTCCT
*
13975429 TTCTTTCCTTCTCTATTTTCCTT-CT
1 TTCTTTCCTTCTCT-TTCTCCTTCCT
* *
13975454 TTCTCTCCTTCTTTTTCT
1 TTCTTTCCTTCTCTTTCT
13975472 ATTTCTATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
24 3 0.08
25 27 0.75
26 6 0.17
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.66
Consensus pattern (25 bp):
TTCTTTCCTTCTCTTTCTCCTTCCT
Found at i:13975468 original size:21 final size:21
Alignment explanation
Indices: 13975401--13975468 Score: 57
Period size: 21 Copynumber: 3.0 Consensus size: 21
13975391 CTAACTTTTC
*
13975401 TCCTTCTTTCTTTCTCTTTCTCTT
1 TCCTTCTTTC--TCTCCTTCT-TT
* *
13975425 TCCTTTCTTTC-CTTCTCTATTT
1 TCC-TTCTTTCTCTCCT-TCTTT
13975447 TCCTTCTTTCTCTCCTTCTTT
1 TCCTTCTTTCTCTCCTTCTTT
13975468 T
1 T
13975469 TCTATTTCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
21 12 0.33
22 12 0.33
23 2 0.06
24 3 0.08
25 7 0.19
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.65
Consensus pattern (21 bp):
TCCTTCTTTCTCTCCTTCTTT
Found at i:13975512 original size:5 final size:5
Alignment explanation
Indices: 13975502--13975539 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
13975492 ATTATTTTAG
13975502 TATAA TATAA TATAA TATAA TATAA TATAA TAT-A TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
13975540 CTTAAAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:13975589 original size:38 final size:37
Alignment explanation
Indices: 13975522--13975601 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
13975512 TATAATATAA
13975522 TATAATATAATATATATACTTAAAATTTAAGTTTTAT
1 TATAATATAATATATATACTTAAAATTTAAGTTTTAT
* * * *
13975559 TATAATATTATATTATATATTTTAACTTTAAGTTTTAT
1 TATAATATAATA-TATATACTTAAAATTTAAGTTTTAT
*
13975597 AATAA
1 TATAA
13975602 AATACACTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
37 11 0.30
38 26 0.70
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (37 bp):
TATAATATAATATATATACTTAAAATTTAAGTTTTAT
Found at i:13983103 original size:16 final size:15
Alignment explanation
Indices: 13983082--13983125 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
13983072 TTTTAAAGGT
*
13983082 TAATTAAGTAATTTGA
1 TAATTAAGTAA-ATGA
*
13983098 TAATTAAGTTAAATGT
1 TAATTAAG-TAAATGA
13983114 TAATTAAGTAAA
1 TAATTAAGTAAA
13983126 AGATGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 4 0.16
16 18 0.72
17 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (15 bp):
TAATTAAGTAAATGA
Found at i:13983935 original size:40 final size:40
Alignment explanation
Indices: 13983880--13984103 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
13983870 AATTATTGTA
* * *
13983880 TGATTGCACAAACGTGCCCTTGTTTGTACTTTGGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
13983920 TGATTGCATATACGTGCCCTTGTTTGTACTTTGATACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
13983960 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGAACCCG
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
*
13984000 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
*
13984040 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTA-CTC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * **
13984079 TGAATGCACTTTTGTGCCCCTGTTT
1 TGATTGCACATACGTGCCCCTGTTT
13984104 ATACCCCGAT
Statistics
Matches: 167, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 22 0.13
40 145 0.87
ACGTcount: A:0.16, C:0.28, G:0.20, T:0.36
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:13983981 original size:20 final size:20
Alignment explanation
Indices: 13983916--13984061 Score: 84
Period size: 20 Copynumber: 7.3 Consensus size: 20
13983906 TACTTTGGTA
*
13983916 CCCCTGATTGCATATACGTG
1 CCCCTGATTGCACATACGTG
* * * ** *
13983936 CCCTTGTTTGTAC-TTTGATA
1 CCCCTGATTGCACATACG-TG
13983956 CCCCTGATTGCACATACGTG
1 CCCCTGATTGCACATACGTG
* * *
13983976 CCCCTGTTTGTAC-TTCG-G
1 CCCCTGATTGCACATACGTG
*
13983994 AACCCGTGATTGCACATACGTG
1 --CCCCTGATTGCACATACGTG
* * * *
13984016 CCCCTGTTTGTAC-TTCGGTA
1 CCCCTGATTGCACATAC-GTG
*
13984036 CCCTTGATTGCACATACGTG
1 CCCCTGATTGCACATACGTG
13984056 CCCCTG
1 CCCCTG
13984062 TTTGTACTTC
Statistics
Matches: 87, Mismatches: 31, Indels: 16
0.65 0.23 0.12
Matches are distributed among these distances:
18 1 0.01
19 7 0.08
20 71 0.82
21 7 0.08
22 1 0.01
ACGTcount: A:0.16, C:0.31, G:0.20, T:0.33
Consensus pattern (20 bp):
CCCCTGATTGCACATACGTG
Found at i:13990135 original size:5 final size:5
Alignment explanation
Indices: 13990125--13990150 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
13990115 ACCTTGCGTG
13990125 AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
13990151 TTTAAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:13994651 original size:33 final size:33
Alignment explanation
Indices: 13994607--13994679 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
13994597 TCCTCCATTT
13994607 TTCCCTTGTCCATACGTTAGGCTTCGGGTTCTTC
1 TTCCC-TGTCCATACGTTAGGCTTCGGGTTCTTC
13994641 TTCCCTGTCCATACGTTAGGCTTCGGGTTCTTC
1 TTCCCTGTCCATACGTTAGGCTTCGGGTTCTTC
13994674 TTCCCT
1 TTCCCT
13994680 CTTTTCTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
33 34 0.87
34 5 0.13
ACGTcount: A:0.08, C:0.32, G:0.19, T:0.41
Consensus pattern (33 bp):
TTCCCTGTCCATACGTTAGGCTTCGGGTTCTTC
Found at i:13996180 original size:15 final size:17
Alignment explanation
Indices: 13996157--13996199 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
13996147 TAATCATAAT
13996157 TAATATATTAAT-AAATA
1 TAAT-TATTAATAAAATA
13996174 -AATTATTAAATAAAATA
1 TAATTATT-AATAAAATA
13996191 TAATTATTA
1 TAATTATTA
13996200 TAGTTGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 4 0.17
16 6 0.26
17 6 0.26
18 7 0.30
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TAATTATTAATAAAATA
Found at i:13996797 original size:20 final size:20
Alignment explanation
Indices: 13996772--13996818 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
13996762 CGCAGGTTAA
* *
13996772 TTTCTTTTACATTTTCATCT
1 TTTCTTTTACATTTCCATAT
*
13996792 TTTCTTTTTCATTTCCATAT
1 TTTCTTTTACATTTCCATAT
13996812 TTT-TTTT
1 TTTCTTTT
13996819 GTCTTTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTCTTTTACATTTCCATAT
Found at i:13998962 original size:9 final size:9
Alignment explanation
Indices: 13998948--13998990 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
13998938 TTACTTGAGT
*
13998948 TTAAAAATA
1 TTAAAAAAA
13998957 TTAAAAAAA
1 TTAAAAAAA
13998966 TTAAAGAAAA
1 TTAAA-AAAA
*
13998976 GTAGAAAAAA
1 TTA-AAAAAA
13998986 TTAAA
1 TTAAA
13998991 TTGAAGTAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 15 0.52
10 12 0.41
11 2 0.07
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (9 bp):
TTAAAAAAA
Found at i:14000226 original size:18 final size:18
Alignment explanation
Indices: 14000181--14000217 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14000171 AATTAATTCT
* *
14000181 AAAAGGATAAAATAATTA
1 AAAAAGATAAAATAAGTA
14000199 AAAAAGATAAAATAAGTA
1 AAAAAGATAAAATAAGTA
14000217 A
1 A
14000218 TCAAAATAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.11, T:0.19
Consensus pattern (18 bp):
AAAAAGATAAAATAAGTA
Found at i:14003608 original size:27 final size:27
Alignment explanation
Indices: 14003569--14003620 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
14003559 GGGATCCTCA
* * *
14003569 TGTTTATTGTCCCGATGGACTATCTCG
1 TGTTTAGTATCCCGACGGACTATCTCG
14003596 TGTTTAGTATCCCGACGGACTATCT
1 TGTTTAGTATCCCGACGGACTATCT
14003621 ATGATGCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
TGTTTAGTATCCCGACGGACTATCTCG
Found at i:14011691 original size:20 final size:20
Alignment explanation
Indices: 14011666--14011772 Score: 81
Period size: 20 Copynumber: 5.3 Consensus size: 20
14011656 TTGTACGGGA
*
14011666 TTTGCACTTCGGTGCCTCTG
1 TTTGCACTTCGGTGCCCCTG
**
14011686 TTTGCACTTTAGTGCCCCTG
1 TTTGCACTTCGGTGCCCCTG
* * ** *
14011706 TATACACTTCCATGTCCCTG
1 TTTGCACTTCGGTGCCCCTG
* *
14011726 TTTGCACATT-TGTGCCCCTA
1 TTTGCAC-TTCGGTGCCCCTG
* *
14011746 TCTGCACTTCGGTGCCCTTG
1 TTTGCACTTCGGTGCCCCTG
14011766 TTATGCA
1 TT-TGCA
14011773 TCTATGATGC
Statistics
Matches: 64, Mismatches: 20, Indels: 5
0.72 0.22 0.06
Matches are distributed among these distances:
19 2 0.03
20 56 0.88
21 6 0.09
ACGTcount: A:0.12, C:0.31, G:0.19, T:0.38
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCCCTG
Found at i:14023059 original size:29 final size:29
Alignment explanation
Indices: 14023024--14023182 Score: 96
Period size: 29 Copynumber: 5.4 Consensus size: 29
14023014 CCATCGATGA
*
14023024 ATGAAAAGGGATAGCTTCGGCTATCGAA-C
1 ATGAAAAGGGATAGCTTCGACTATC-AATC
* *
14023053 ATGAAAAGGGATATCTTCGACTATCAATT
1 ATGAAAAGGGATAGCTTCGACTATCAATC
* * * *
14023082 ATGAAAAGGGA-CGGTGACGACCATCAA-C
1 ATGAAAAGGGATAGCT-TCGACTATCAATC
* * *
14023110 AATGAAAAGGGAT-GGTGAT-GACCATTGAA-C
1 -ATGAAAAGGGATAGCT--TCGACTA-TCAATC
* *
14023140 TATGAAAAGAGATAGCTTCGACTATCAAATT
1 -ATGAAAAGGGATAGCTTCGACTATC-AATC
14023171 ATGAAAAGGGAT
1 ATGAAAAGGGAT
14023183 GGTGACGACC
Statistics
Matches: 101, Mismatches: 19, Indels: 19
0.73 0.14 0.14
Matches are distributed among these distances:
28 3 0.03
29 64 0.63
30 32 0.32
31 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGACTATCAATC
Found at i:14023147 original size:30 final size:30
Alignment explanation
Indices: 14023081--14023242 Score: 150
Period size: 30 Copynumber: 5.4 Consensus size: 30
14023071 GACTATCAAT
* *
14023081 TATGAAAAGGGACGGTGACGACCATC-AAC
1 TATGAAAAGGGATGGTGATGACCATCAAAC
* **
14023110 AATGAAAAGGGATGGTGATGACCATTGAAC
1 TATGAAAAGGGATGGTGATGACCATCAAAC
* * * *
14023140 TATGAAAAGAGATAGCT--TCGACTATCAAAT
1 TATGAAAAGGGAT-GGTGAT-GACCATCAAAC
* *
14023170 TATGAAAAGGGATGGTGACGACCATCGAAC
1 TATGAAAAGGGATGGTGATGACCATCAAAC
* * *
14023200 AATGAAAATGGATGGTGATGACCATCAAAT
1 TATGAAAAGGGATGGTGATGACCATCAAAC
*
14023230 TATGAAAATGGAT
1 TATGAAAAGGGAT
14023243 AACTTTGGCT
Statistics
Matches: 105, Mismatches: 23, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
29 25 0.24
30 78 0.74
31 2 0.02
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGATGACCATCAAAC
Found at i:14023227 original size:60 final size:59
Alignment explanation
Indices: 14023082--14023242 Score: 168
Period size: 60 Copynumber: 2.7 Consensus size: 59
14023072 ACTATCAATT
* * * * *
14023082 ATGAAAAGGGACGGTGACGACCATCAACA--ATGAAAAGGGATGGTGATGACCATTGAACT
1 ATGAAAA-GGATGGTGATGACCATCAA-ATTATGAAAAGGGATGGTGACGACCATCGAACA
* *
14023141 ATGAAAAGAGATAGCT--TCGACTATCAAATTATGAAAAGGGATGGTGACGACCATCGAACA
1 ATGAAAAG-GAT-GGTGAT-GACCATCAAATTATGAAAAGGGATGGTGACGACCATCGAACA
*
14023201 ATGAAAATGGATGGTGATGACCATCAAATTATGAAAATGGAT
1 ATGAAAA-GGATGGTGATGACCATCAAATTATGAAAAGGGAT
14023243 AACTTTGGCT
Statistics
Matches: 84, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
58 2 0.02
59 19 0.23
60 61 0.73
61 2 0.02
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.20
Consensus pattern (59 bp):
ATGAAAAGGATGGTGATGACCATCAAATTATGAAAAGGGATGGTGACGACCATCGAACA
Found at i:14023288 original size:30 final size:30
Alignment explanation
Indices: 14023230--14023288 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
14023220 ACCATCAAAT
* *
14023230 TATGAAAATGGATAACTTTGGCTGTCGAAC
1 TATGAAAATGGATAACTTCGGCTATCGAAC
* * *
14023260 TATGGAAATGGATAGCTTCGGTTATCGAA
1 TATGAAAATGGATAACTTCGGCTATCGAA
14023289 TTACGTAATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (30 bp):
TATGAAAATGGATAACTTCGGCTATCGAAC
Found at i:14025738 original size:30 final size:30
Alignment explanation
Indices: 14025702--14025758 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
14025692 ACGAGCCTTG
14025702 GGCAAAAGTGTAAATCTGCAAAAGTTTACA
1 GGCAAAAGTGTAAATCTGCAAAAGTTTACA
* * * *
14025732 GGCAAAATTGTAATTTTGCCAAAGTTT
1 GGCAAAAGTGTAAATCTGCAAAAGTTT
14025759 GAGTCAAGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (30 bp):
GGCAAAAGTGTAAATCTGCAAAAGTTTACA
Found at i:14026227 original size:23 final size:23
Alignment explanation
Indices: 14026197--14026295 Score: 108
Period size: 23 Copynumber: 4.3 Consensus size: 23
14026187 AGTGTTATTG
14026197 ATCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
* ** * *
14026220 ATCTGTGGTAGCTTTGACTAAAT
1 ATCAGTGGTAGCTACGGCTACAT
* * *
14026243 TTCAATGGTAGCTACGGCTACGT
1 ATCAGTGGTAGCTACGGCTACAT
* *
14026266 ATCAGTGGTAGCTTCGGGTACAT
1 ATCAGTGGTAGCTACGGCTACAT
14026289 ATCAGTG
1 ATCAGTG
14026296 TGGAACTTAT
Statistics
Matches: 58, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTACGGCTACAT
Found at i:14029579 original size:23 final size:23
Alignment explanation
Indices: 14029544--14029642 Score: 117
Period size: 23 Copynumber: 4.3 Consensus size: 23
14029534 AGTATTATTG
*
14029544 ATCAATGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
* * *
14029567 ATCTGTGGTAGCTTCGGCTAAAT
1 ATCAGTGGTAGCTACGGCTACAT
* *
14029590 TTCAGTGGTAGCTACGGCTACGT
1 ATCAGTGGTAGCTACGGCTACAT
* * *
14029613 ATCAGTAGTAGCTTCAGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
14029636 ATCAGTG
1 ATCAGTG
14029643 TGGCACTTAT
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTACGGCTACAT
Found at i:14029624 original size:46 final size:46
Alignment explanation
Indices: 14029544--14029642 Score: 135
Period size: 46 Copynumber: 2.2 Consensus size: 46
14029534 AGTATTATTG
* * * *
14029544 ATCAATGGTAGCTACGGCTACATATCTGTGGTAGCTTCGGCTAAAT
1 ATCAGTGGTAGCTACGGCTACATATCAGTAGTAGCTTCAGCTAAAT
* * *
14029590 TTCAGTGGTAGCTACGGCTACGTATCAGTAGTAGCTTCAGCTACAT
1 ATCAGTGGTAGCTACGGCTACATATCAGTAGTAGCTTCAGCTAAAT
14029636 ATCAGTG
1 ATCAGTG
14029643 TGGCACTTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (46 bp):
ATCAGTGGTAGCTACGGCTACATATCAGTAGTAGCTTCAGCTAAAT
Found at i:14032045 original size:18 final size:17
Alignment explanation
Indices: 14032012--14032050 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
14032002 TTTTATAAAT
14032012 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
14032030 TGTGAATTAT-TATTGAA
1 TGTGAATTATAT-TTGAA
14032047 TGTG
1 TGTG
14032051 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:14032306 original size:23 final size:23
Alignment explanation
Indices: 14032276--14032374 Score: 135
Period size: 23 Copynumber: 4.3 Consensus size: 23
14032266 AGTGTTATTG
*
14032276 ATCAGTGGTAGCTACAGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
* *
14032299 ATCTGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
* *
14032322 TTCAGTGGTAGCTACGGCTACGT
1 ATCAGTGGTAGCTACGGCTACAT
* *
14032345 ATCAGTGGTAGCTTCGGCTGCAT
1 ATCAGTGGTAGCTACGGCTACAT
14032368 ATCAGTG
1 ATCAGTG
14032375 TGGCACTTAT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 65 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTACGGCTACAT
Found at i:14032353 original size:46 final size:46
Alignment explanation
Indices: 14032276--14032374 Score: 153
Period size: 46 Copynumber: 2.2 Consensus size: 46
14032266 AGTGTTATTG
*
14032276 ATCAGTGGTAGCTACAGCTACATATCTGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACAGCTACATATCAGTGGTAGCTTCGGCTACAT
* * * *
14032322 TTCAGTGGTAGCTACGGCTACGTATCAGTGGTAGCTTCGGCTGCAT
1 ATCAGTGGTAGCTACAGCTACATATCAGTGGTAGCTTCGGCTACAT
14032368 ATCAGTG
1 ATCAGTG
14032375 TGGCACTTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
ATCAGTGGTAGCTACAGCTACATATCAGTGGTAGCTTCGGCTACAT
Found at i:14035319 original size:16 final size:16
Alignment explanation
Indices: 14035298--14035329 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14035288 AAAAATAAGG
*
14035298 AATCATGGGAATTAGA
1 AATCATGGAAATTAGA
14035314 AATCATGGAAATTAGA
1 AATCATGGAAATTAGA
14035330 TTAAGGTCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.22, T:0.25
Consensus pattern (16 bp):
AATCATGGAAATTAGA
Found at i:14036325 original size:425 final size:424
Alignment explanation
Indices: 14035510--14036355 Score: 1370
Period size: 425 Copynumber: 2.0 Consensus size: 424
14035500 TCTCTCCTCT
* *
14035510 TTTCTCTTCAATTTTCTTTCTTTTTCCCATGTGTGTTGCCGCCCAAGCCACCAAAATTCACCATT
1 TTTCTCTTCAACTTTCTTTCTTTTTCCCATGTGTGCTGCCGCCCAAGCCACCAAAATTCACCATT
*
14035575 AATTTCTCTTCTTTTTACAGTGGGTTCTTGCACCATTCTCTTCATCTTCTTGCTATCATTTTATC
66 AATTTCTCTTCTTTTTACAGCGGGTTCTTGCACCATTCTCTTCATCTTCTTGCTATCATTTTATC
* * * * **
14035640 ATAAAATTTCCAGCCTTAAATCTAAAATTTTATCAATCAAAATTGACCTCCATTGTTGCCCCAAA
131 ATAAAACTTCCAGCCTTAAATCTAAAATTTTAGCAATCAAAATCGACCTCCACTAATGCCCCAAA
* * * *
14035705 AGAAATCCATTGCCGCCCATATCTTCTTGCTTGAGTAGGTGTCATTTTCTTTCAATTTTCTTGAT
196 AGAAATCCATTACCACCCATATCTTCTTACTTGAATAGGTGTCATTTTCTTTCAATTTTCTTGAT
*
14035770 GGATCTTTCAATAAAATAACCAATTTTATAGATCTAGAATTGGGATAATATTTAAAGATTTAATA
261 GGATCTTTCAATAAAATAACCAATTTTATAGATCTAAAATTGGGATAATATTTAAAGATTTAATA
* *
14035835 ATTATTTTTCTAGCCTTTAAAGCAATTTTAAATGTTGTTTTAAATTAGCCCCAATTTGGCCACCG
326 ATTATATTTCTAGCCTTTAAAGCAATTTTAAATGTTGTTTTAAATCAGCCCCAATTTGGCCACCG
*
14035900 TTGGTGGTGGTGTGTGCGCCTAAGGGCTAGATTC
391 TTGGTGGTGGTGTGTGCGCCTAAAGGCTAGATTC
* *
14035934 TTTCTTTTCAACTTTCTTTCATTTTTCCCTTGTGTGCTGCCGCCCAAGCCACCAAAATTCACCAT
1 TTTCTCTTCAACTTTCTTTC-TTTTTCCCATGTGTGCTGCCGCCCAAGCCACCAAAATTCACCAT
* * * *
14035999 TAATTTCTTTTCTTTTTACAGCGTGTTCTTGCACCATTCTTTTCATCTTCTTGCTATCGTTTTAT
65 TAATTTCTCTTCTTTTTACAGCGGGTTCTTGCACCATTCTCTTCATCTTCTTGCTATCATTTTAT
* * *
14036064 CATAAAACTTCCAGCCTTAAATCTGAAATTTTAGCACTCAAAATCGACCTCCACTAATGCCCTGA
130 CATAAAACTTCCAGCCTTAAATCTAAAATTTTAGCAATCAAAATCGACCTCCACTAATGCCC-CA
* * * *
14036129 AAA-AAATCCATTACTACCCCTATTTTCTTACTTGAATAGGTGTCATTTTCTTTCATTTTTCTTG
194 AAAGAAATCCATTACCACCCATATCTTCTTACTTGAATAGGTGTCATTTTCTTTCAATTTTCTTG
* *
14036193 ATGGATCTTTCAATAAAATAACCAATTTTATAGATCTAAAATTGGGGTAATTTTTAAAGATTTAA
259 ATGGATCTTTCAATAAAATAACCAATTTTATAGATCTAAAATTGGGATAATATTTAAAGATTTAA
*
14036258 TAATTATATTTCTAGCCTTTAAAGCAATTTTAAATGTTGTTTTAAATCAGCCCCAATTTGTCCAC
324 TAATTATATTTCTAGCCTTTAAAGCAATTTTAAATGTTGTTTTAAATCAGCCCCAATTTGGCCAC
14036323 CGTTGGTGGTGGTGTGTGCGCCTAAAGGCTAGA
389 CGTTGGTGGTGGTGTGTGCGCCTAAAGGCTAGA
14036356 AAAGGGGTTT
Statistics
Matches: 387, Mismatches: 33, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
424 18 0.05
425 365 0.94
426 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (424 bp):
TTTCTCTTCAACTTTCTTTCTTTTTCCCATGTGTGCTGCCGCCCAAGCCACCAAAATTCACCATT
AATTTCTCTTCTTTTTACAGCGGGTTCTTGCACCATTCTCTTCATCTTCTTGCTATCATTTTATC
ATAAAACTTCCAGCCTTAAATCTAAAATTTTAGCAATCAAAATCGACCTCCACTAATGCCCCAAA
AGAAATCCATTACCACCCATATCTTCTTACTTGAATAGGTGTCATTTTCTTTCAATTTTCTTGAT
GGATCTTTCAATAAAATAACCAATTTTATAGATCTAAAATTGGGATAATATTTAAAGATTTAATA
ATTATATTTCTAGCCTTTAAAGCAATTTTAAATGTTGTTTTAAATCAGCCCCAATTTGGCCACCG
TTGGTGGTGGTGTGTGCGCCTAAAGGCTAGATTC
Found at i:14052374 original size:19 final size:19
Alignment explanation
Indices: 14052350--14052517 Score: 246
Period size: 19 Copynumber: 8.8 Consensus size: 19
14052340 AATCTTCAGG
14052350 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14052369 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
14052388 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14052407 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14052426 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* ** *
14052445 AATATATAATATTAGATAT
1 GATATGCAATCTTAGATAT
14052464 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
** *
14052483 GATATATAATATTAGATAT
1 GATATGCAATCTTAGATAT
14052502 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14052518 AGATATAATT
Statistics
Matches: 129, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 129 1.00
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14052424 original size:57 final size:57
Alignment explanation
Indices: 14052350--14052517 Score: 273
Period size: 57 Copynumber: 2.9 Consensus size: 57
14052340 AATCTTCAGG
14052350 GATATGCAATCTTAGATATGATATGCAATCTTAGATATAATATATAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATATAATATATAATCTTAGATAT
*
14052407 GATATGCAATCTTAGATATGATATGCAATCTTAGATATAATATATAATATTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATATAATATATAATCTTAGATAT
** * * **
14052464 GATATGCAATCTTAGATATGATATATAATATTAGATATGATATGCAATCTTAGA
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATATAATATATAATCTTAGA
14052518 AGATATAATT
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 103 1.00
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATGCAATCTTAGATATAATATATAATCTTAGATAT
Found at i:14052701 original size:44 final size:45
Alignment explanation
Indices: 14052647--14052847 Score: 121
Period size: 44 Copynumber: 4.6 Consensus size: 45
14052637 TACTTCCCTG
*
14052647 GACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
1 GACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
* ** * ** * * **
14052692 G-CAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTCT
1 GACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
*** * * * *
14052736 GGTTATAGTGGAGTACATTGAAG---CCAGTAAT-TCTA-CTTCCC-AG
1 GACAATAGTGGAATAGATTGAAGATTTCAG--ATCT-TATC-TCCCTAA
*
14052779 GACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
1 GACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
* *
14052824 G-CAATAGTGGAACAGATCGAAGAT
1 GACAATAGTGGAATAGATTGAAGAT
14052848 GGCGGATTTT
Statistics
Matches: 114, Mismatches: 31, Indels: 23
0.68 0.18 0.14
Matches are distributed among these distances:
42 3 0.03
43 19 0.17
44 69 0.61
45 20 0.18
46 3 0.03
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (45 bp):
GACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
Found at i:14053085 original size:44 final size:44
Alignment explanation
Indices: 14053037--14053217 Score: 104
Period size: 44 Copynumber: 4.1 Consensus size: 44
14053027 TAATTCTACT
14053037 TCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
1 TCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
* ** ** * ** * * *
14053081 TCCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACC
1 TCCCTGGA-CAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
*** * * * *
14053125 TCCCTGTGGTTATAGTGGAGTACATTGAAG---CCAGTAAT-TCTA-C
1 TCCCTG-GACAACAGTGGAATAGATTGAAGATTTCAG--ATCT-TATC
14053168 TTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
1 -TCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
14053213 TCCCT
1 TCCCT
14053218 AAGCAGTAGT
Statistics
Matches: 97, Mismatches: 28, Indels: 24
0.65 0.19 0.16
Matches are distributed among these distances:
42 2 0.02
43 20 0.21
44 55 0.57
45 17 0.18
46 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (44 bp):
TCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
Found at i:14053347 original size:132 final size:132
Alignment explanation
Indices: 14052573--14053332 Score: 1308
Period size: 132 Copynumber: 5.8 Consensus size: 132
14052563 ACAGCGAAGT
*
14052573 AGATCGAAGATGGCGGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
14052638 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
66 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
14052703 GC
131 GC
* * *
14052705 AGATCGAAGATGGCAGATTTTACCTCCCTCTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* *
14052770 ACTTCCCAGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAATAGTGGA
66 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
*
14052835 AC
131 GC
*
14052837 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * *
14052902 ACTTCCCTGGACAACAGTGGAATAGATTGTAGATTTCAGGTCTTATCTCCCTAAGCAGTAGGGGA
66 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
14052967 GC
131 GC
*
14052969 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGGAGCCAGTAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
14053034 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
66 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
14053099 GC
131 GC
*
14053101 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
14053166 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
66 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
14053231 GC
131 GC
* * *
14053233 AGATTGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGCGGAGTACATTGAAGCCAGTAA-TCA
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC-
* * **
14053297 TA-TCTCCCTGGTCAGCAGTGGAATAGGCTGAAGATT
65 TACT-TCCCTGGACAACAGTGGAATAGATTGAAGATT
14053333 GTAAGTCCTA
Statistics
Matches: 596, Mismatches: 30, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
131 3 0.01
132 593 0.99
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
GC
Found at i:14053686 original size:19 final size:19
Alignment explanation
Indices: 14053662--14053772 Score: 168
Period size: 19 Copynumber: 5.8 Consensus size: 19
14053652 AATCTTCAGG
14053662 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14053681 GATATGCAATGTTAGATAT
1 GATATGCAATCTTAGATAT
* ** *
14053700 AATATATAATCATAGATAT
1 GATATGCAATCTTAGATAT
14053719 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14053738 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14053757 AATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14053773 AGATATGATT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 81 1.00
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14055126 original size:30 final size:30
Alignment explanation
Indices: 14055058--14055129 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
14055048 ATCGACGACC
**
14055058 ATCAAATTATGAAAAGGGATGGCTTCAGCA
1 ATCAAATTATGAAAAGGGATAACTTCAGCA
* * * *
14055088 ATCGAATTATGTAAAGGGATAACTTCGGCT
1 ATCAAATTATGAAAAGGGATAACTTCAGCA
14055118 ATCAAATTATGA
1 ATCAAATTATGA
14055130 TAGTGAAAAG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATAACTTCAGCA
Found at i:14055230 original size:29 final size:30
Alignment explanation
Indices: 14055133--14055262 Score: 124
Period size: 30 Copynumber: 4.4 Consensus size: 30
14055123 ATTATGATAG
* *
14055133 TGAAAAGGGATGGTGACGACCATCAAATTA
1 TGAAAAGGGATGGTGACTACCATCAAAATA
* * ** *
14055163 TGAAAATGGATGGCTTTGGCT---ATTGAATTA
1 TGAAAAGGGATGG---TGACTACCATCAAAATA
* *
14055193 TGAATAGGGATGGTGACTACCATCAACA-A
1 TGAAAAGGGATGGTGACTACCATCAAAATA
14055222 TGAAAAGGGATGGTGACTACCATCAAAATA
1 TGAAAAGGGATGGTGACTACCATCAAAATA
14055252 TGAAAAGGGAT
1 TGAAAAGGGAT
14055263 AACTTCGACT
Statistics
Matches: 79, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
27 4 0.05
29 27 0.34
30 45 0.57
33 3 0.04
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (30 bp):
TGAAAAGGGATGGTGACTACCATCAAAATA
Found at i:14055304 original size:89 final size:89
Alignment explanation
Indices: 14055133--14055305 Score: 213
Period size: 89 Copynumber: 1.9 Consensus size: 89
14055123 ATTATGATAG
* * ** * * ** * *
14055133 TGAAAAGGGATGGTGACGACCATCAAATTATGAAAATGGATGGCTTTGGCTATTGAATTATGAAT
1 TGAAAAGGGATGGTGACGACCATCAAAATATGAAAAGGGATAACTTCGACTACCGAACTATGAAA
* *
14055198 AGGGATGGTGACTACCATCAACAA
66 AGGGATGGTAACAACCATCAACAA
*
14055222 TGAAAAGGGATGGTGACTACCATCAAAATATGAAAAGGGATAACTTCGACTACCGAACTATGAAA
1 TGAAAAGGGATGGTGACGACCATCAAAATATGAAAAGGGATAACTTCGACTACCGAACTATGAAA
14055287 ATGGG-TGGTAACAACCATC
66 A-GGGATGGTAACAACCATC
14055306 GTGATTTTTC
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
89 67 0.96
90 3 0.04
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (89 bp):
TGAAAAGGGATGGTGACGACCATCAAAATATGAAAAGGGATAACTTCGACTACCGAACTATGAAA
AGGGATGGTAACAACCATCAACAA
Found at i:14069331 original size:16 final size:17
Alignment explanation
Indices: 14069310--14069357 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 17
14069300 CTCATATCCA
14069310 ATTATAGTAAAAATAG-
1 ATTATAGTAAAAATAGC
*
14069326 ATTATAGTATTACAA-AGC
1 ATTATAGTA--AAAATAGC
14069344 ATTATAGTAAAAAT
1 ATTATAGTAAAAAT
14069358 GTAACTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
16 12 0.46
17 2 0.08
18 12 0.46
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.33
Consensus pattern (17 bp):
ATTATAGTAAAAATAGC
Found at i:14070578 original size:60 final size:59
Alignment explanation
Indices: 14070514--14070630 Score: 162
Period size: 59 Copynumber: 2.0 Consensus size: 59
14070504 AAGCCTACTA
* *
14070514 GGCACAGAGCCTAAATAACACCGGCATAAAGCCTGCTAGGCACAAAGCCTAAATAACACC
1 GGCACAAAGCCTAAATAACACCGGCAT-AAGCCTGCTAGGCACAAAGCATAAATAACACC
* * * * *
14070574 GGCACAAAGCCTGAATAACATCGGCATAAGCCTGCTAGGTAGAAAGCATGAATAACA
1 GGCACAAAGCCTAAATAACACCGGCATAAGCCTGCTAGGCACAAAGCATAAATAACA
14070631 TTATACTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
59 26 0.52
60 24 0.48
ACGTcount: A:0.40, C:0.26, G:0.21, T:0.14
Consensus pattern (59 bp):
GGCACAAAGCCTAAATAACACCGGCATAAGCCTGCTAGGCACAAAGCATAAATAACACC
Found at i:14070586 original size:38 final size:38
Alignment explanation
Indices: 14070477--14070586 Score: 166
Period size: 38 Copynumber: 2.9 Consensus size: 38
14070467 TAATACACCA
* * * *
14070477 GCACAAAGCCTGAATAACACTGACACAAAGCCTACTAG
1 GCACAAAGCCTAAATAACACCGGCACAAAGCCTGCTAG
* *
14070515 GCACAGAGCCTAAATAACACCGGCATAAAGCCTGCTAG
1 GCACAAAGCCTAAATAACACCGGCACAAAGCCTGCTAG
14070553 GCACAAAGCCTAAATAACACCGGCACAAAGCCTG
1 GCACAAAGCCTAAATAACACCGGCACAAAGCCTG
14070587 AATAACATCG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.40, C:0.30, G:0.18, T:0.12
Consensus pattern (38 bp):
GCACAAAGCCTAAATAACACCGGCACAAAGCCTGCTAG
Found at i:14070606 original size:21 final size:22
Alignment explanation
Indices: 14070471--14070607 Score: 84
Period size: 22 Copynumber: 6.8 Consensus size: 22
14070461 AAATTTTAAT
*
14070471 ACACCAGCACAAAGCCTGAATA
1 ACACCGGCACAAAGCCTGAATA
* * *
14070493 ACACTGACACAAAGCCT-ACT-
1 ACACCGGCACAAAGCCTGAATA
* *
14070513 --A--GGCACAGAGCCTAAATA
1 ACACCGGCACAAAGCCTGAATA
* *
14070531 ACACCGGCATAAAGCCTG-CT-
1 ACACCGGCACAAAGCCTGAATA
*
14070551 --A--GGCACAAAGCCTAAATA
1 ACACCGGCACAAAGCCTGAATA
14070569 ACACCGGCACAAAGCCTGAATA
1 ACACCGGCACAAAGCCTGAATA
* *
14070591 ACATCGGCA-TAAGCCTG
1 ACACCGGCACAAAGCCTG
14070608 CTAGGTAGAA
Statistics
Matches: 86, Mismatches: 17, Indels: 25
0.67 0.13 0.20
Matches are distributed among these distances:
16 21 0.24
17 3 0.03
18 2 0.02
20 2 0.02
21 10 0.12
22 48 0.56
ACGTcount: A:0.40, C:0.30, G:0.18, T:0.12
Consensus pattern (22 bp):
ACACCGGCACAAAGCCTGAATA
Found at i:14072730 original size:18 final size:19
Alignment explanation
Indices: 14072693--14072730 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14072683 AAAGTTAGGA
* *
14072693 AAAAGATTATATTCTTTCC
1 AAAAGAATATAATCTTTCC
14072712 AAAAGAATATAAT-TTTCC
1 AAAAGAATATAATCTTTCC
14072730 A
1 A
14072731 TGTCCTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.45, C:0.13, G:0.05, T:0.37
Consensus pattern (19 bp):
AAAAGAATATAATCTTTCC
Found at i:14074545 original size:14 final size:14
Alignment explanation
Indices: 14074524--14074557 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
14074514 TGGTATGGGT
14074524 TTAT-GGGTTTTGG
1 TTATAGGGTTTTGG
14074537 TTATAGGGTTTTGG
1 TTATAGGGTTTTGG
14074551 TTATAGG
1 TTATAGG
14074558 CAAATGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (14 bp):
TTATAGGGTTTTGG
Found at i:14078191 original size:1 final size:1
Alignment explanation
Indices: 14078185--14078213 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
14078175 ACACACACAC
14078185 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14078214 CCTATTACGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:14079148 original size:16 final size:16
Alignment explanation
Indices: 14079114--14079148 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14079104 AGTATTACGA
*
14079114 TAACATTTCAAACATT
1 TAACATTTCAAACAAT
*
14079130 TAACATTTCATACAAT
1 TAACATTTCAAACAAT
14079146 TAA
1 TAA
14079149 ATATTCAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (16 bp):
TAACATTTCAAACAAT
Found at i:14080605 original size:69 final size:68
Alignment explanation
Indices: 14080482--14080728 Score: 273
Period size: 69 Copynumber: 3.6 Consensus size: 68
14080472 ATATAAAGAG
* * * * *
14080482 TGTGCCCAACACTAGTCAGATAAATTGAGAGAAGTTGCACCCAGCGCTAGTCGGATAACCGACGA
1 TGTG-CCAGCACTAGTAAGATAAACTGACAGAAGTTGCACCTAGCGCTAGTCGGATAACCGACGA
14080547 TGGT
65 TGGT
* * * * * *
14080551 TCTGCTCAGCACTAGTAAGATGAACTAACAGATGTTGCACCTAGCACTAGTCGGATAACCGACAA
1 TGTGC-CAGCACTAGTAAGATAAACTGACAGAAGTTGCACCTAGCGCTAGTCGGATAACCGACGA
14080616 TGGT
65 TGGT
* * **
14080620 TGTGCCCAGCACTAGTCAA-ATAAACTGACAAAAGTTG-AGCCTAGCGCTAGTCGAATAACTAAC
1 TGTG-CCAGCACTAGT-AAGATAAACTGACAGAAGTTGCA-CCTAGCGCTAGTCGGATAACCGAC
*
14080683 GATAGT
63 GATGGT
*
14080689 TGTGCCTAGCACTAGTTAGATAAACTGACAGAAGTTGCAC
1 TGTGCC-AGCACTAGTAAGATAAACTGACAGAAGTTGCAC
14080729 TGGTTGTGCC
Statistics
Matches: 147, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
68 5 0.03
69 138 0.94
70 4 0.03
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (68 bp):
TGTGCCAGCACTAGTAAGATAAACTGACAGAAGTTGCACCTAGCGCTAGTCGGATAACCGACGAT
GGT
Found at i:14080670 original size:35 final size:35
Alignment explanation
Indices: 14080590--14080725 Score: 114
Period size: 34 Copynumber: 3.9 Consensus size: 35
14080580 AGATGTTGCA
** * ** *
14080590 CCTAGCACTAGTCGGAT-AACCGACAATGGTTGTG
1 CCTAGCACTAGTCAAATAAACTGACAAAAGTTGAG
*
14080624 CCCAGCACTAGTCAAATAAACTGACAAAAGTTGAG
1 CCTAGCACTAGTCAAATAAACTGACAAAAGTTGAG
* * * * * *
14080659 CCTAGCGCTAGTCGAAT-AACTAACGATAGTTGTG
1 CCTAGCACTAGTCAAATAAACTGACAAAAGTTGAG
* * *
14080693 CCTAGCACTAGTTAGATAAACTGACAGAAGTTG
1 CCTAGCACTAGTCAAATAAACTGACAAAAGTTG
14080726 CACTGGTTGT
Statistics
Matches: 78, Mismatches: 22, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
34 40 0.51
35 38 0.49
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (35 bp):
CCTAGCACTAGTCAAATAAACTGACAAAAGTTGAG
Found at i:14080753 original size:44 final size:44
Alignment explanation
Indices: 14080687--14080772 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
14080677 ACTAACGATA
*
14080687 GTTGTGCCTAGCACTAGTTAGATAAACTGACAGAAGTTGCACTG
1 GTTGTGCCCAGCACTAGTTAGATAAACTGACAGAAGTTGCACTG
* *
14080731 GTTGTGCCCAGCACT-GTGTAGATAAATTGATAGAAGTTGCAC
1 GTTGTGCCCAGCACTAGT-TAGATAAACTGACAGAAGTTGCAC
14080773 CAAGCGCTAG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 2 0.05
44 36 0.95
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (44 bp):
GTTGTGCCCAGCACTAGTTAGATAAACTGACAGAAGTTGCACTG
Found at i:14080828 original size:113 final size:113
Alignment explanation
Indices: 14080616--14080838 Score: 270
Period size: 113 Copynumber: 2.0 Consensus size: 113
14080606 TAACCGACAA
* *
14080616 TGGTTGTGCCCAGCACTAGTCAAATAAACTGACAAAAGTTGAGCCTAGCGCTAGTCGAATAACTA
1 TGGTTGTGCCCAGCACTAGTCAAATAAACTGACAAAAGTTGAGCCAAGCGCTAGTCGAATAACCA
* * * * *
14080681 ACGATAGTTGTGCCTAGCACTAGTTAGATAAACTGACAGAAGTTGCAC
66 ACGATAGTTGTGCCCAACACCAGTCAGAGAAACTGACAGAAGTTGCAC
* * * * * *
14080729 TGGTTGTGCCCAGCACT-GTGTAGATAAATTGATAGAAGTTGCA-CCAAGCGCTAGTCGGATAAC
1 TGGTTGTGCCCAGCACTAGT-CAAATAAACTGACAAAAGTTG-AGCCAAGCGCTAGTCGAATAAC
* * *
14080792 CGACGATGGTTGTGCCCAACACCAGTCAGAGGAACTGACAGAAGTTG
64 CAACGATAGTTGTGCCCAACACCAGTCAGAGAAACTGACAGAAGTTG
14080839 TGCCCAGCGC
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
112 2 0.02
113 89 0.97
114 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (113 bp):
TGGTTGTGCCCAGCACTAGTCAAATAAACTGACAAAAGTTGAGCCAAGCGCTAGTCGAATAACCA
ACGATAGTTGTGCCCAACACCAGTCAGAGAAACTGACAGAAGTTGCAC
Found at i:14080848 original size:69 final size:69
Alignment explanation
Indices: 14080762--14080924 Score: 236
Period size: 69 Copynumber: 2.4 Consensus size: 69
14080752 ATAAATTGAT
* * *
14080762 AGAAGTTGCACCAAGCGCTAGTCGGATAACCGACGATGGTTGTGCCCAACACCAGTCAGAGGAAC
1 AGAAGTTGCGCCCAGCGCTAGTCGGATAACCGACAATGGTTGTGCCCAACACCAGTCAGAGGAAC
*
14080827 TGAC
66 TAAC
* * * * *
14080831 AGAAGTTGTGCCCAGCGCTAGTCGGATAACCGACAATGGTTGTGCCCAGCACTAGTTAGATGAAC
1 AGAAGTTGCGCCCAGCGCTAGTCGGATAACCGACAATGGTTGTGCCCAACACCAGTCAGAGGAAC
14080896 TAAC
66 TAAC
*
14080900 AGAAGTTGCGCCCAGCGTTAGTCGG
1 AGAAGTTGCGCCCAGCGCTAGTCGG
14080925 GTGAACCAAC
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 83 1.00
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.19
Consensus pattern (69 bp):
AGAAGTTGCGCCCAGCGCTAGTCGGATAACCGACAATGGTTGTGCCCAACACCAGTCAGAGGAAC
TAAC
Found at i:14080991 original size:20 final size:20
Alignment explanation
Indices: 14080966--14081013 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
14080956 AGTCCATAAA
14080966 ATCACATTTCACAACCCAAT
1 ATCACATTTCACAACCCAAT
* *
14080986 ATCACATTTCATAACTCAAT
1 ATCACATTTCACAACCCAAT
14081006 ATCACATT
1 ATCACATT
14081014 CACTTCAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.40, C:0.29, G:0.00, T:0.31
Consensus pattern (20 bp):
ATCACATTTCACAACCCAAT
Found at i:14085284 original size:18 final size:18
Alignment explanation
Indices: 14085261--14085296 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
14085251 GCTGCAAGGA
14085261 TAGGTTTTTGAATAATAG
1 TAGGTTTTTGAATAATAG
14085279 TAGGTTTTTGAATAATAG
1 TAGGTTTTTGAATAATAG
14085297 CAGGATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (18 bp):
TAGGTTTTTGAATAATAG
Found at i:14087055 original size:23 final size:24
Alignment explanation
Indices: 14087028--14087074 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
14087018 ATTCCATGTT
14087028 CATATAGCAT-TATC-TCATATTTC
1 CATATAGCATGTATCATCAT-TTTC
*
14087051 CATATATCATGTATCATCATTTTC
1 CATATAGCATGTATCATCATTTTC
14087075 ATGTATTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
24 8 0.38
25 4 0.19
ACGTcount: A:0.30, C:0.21, G:0.04, T:0.45
Consensus pattern (24 bp):
CATATAGCATGTATCATCATTTTC
Found at i:14087296 original size:26 final size:25
Alignment explanation
Indices: 14087267--14087322 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
14087257 ATCCTCTCTC
14087267 GAGCCATATAA-AAGGAAGCTCACAAA
1 GAGCCAT-TAACAA-GAAGCTCACAAA
14087293 GAGCCATTAATCAAGAAGCTCACAAA
1 GAGCCATTAA-CAAGAAGCTCACAAA
14087319 GAGC
1 GAGC
14087323 ATTTCAGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 3 0.11
26 23 0.82
27 2 0.07
ACGTcount: A:0.46, C:0.21, G:0.20, T:0.12
Consensus pattern (25 bp):
GAGCCATTAACAAGAAGCTCACAAA
Done.