Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 50 of 168
Found at i:14087604 original size:64 final size:64
Alignment explanation
Indices: 14087503--14087623 Score: 190
Period size: 64 Copynumber: 1.9 Consensus size: 64
14087493 GAGCCATATT
* *
14087503 AGGACGCTCACAAAGAACTGCGGTATGTCCGCAACACATGCAAGACCACTACCGATCATATAAC
1 AGGACGCTCACAAAGAACTACGGTATGTCCGCAACACATCCAAGACCACTACCGATCATATAAC
* *
14087567 AGGACGCTCACAAA-AAGCTATGGTATGTCCGCAACACATCCAGGACCACTACCGATC
1 AGGACGCTCACAAAGAA-CTACGGTATGTCCGCAACACATCCAAGACCACTACCGATC
14087624 GGGATGCTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
63 2 0.04
64 50 0.96
ACGTcount: A:0.35, C:0.31, G:0.19, T:0.16
Consensus pattern (64 bp):
AGGACGCTCACAAAGAACTACGGTATGTCCGCAACACATCCAAGACCACTACCGATCATATAAC
Found at i:14094116 original size:26 final size:25
Alignment explanation
Indices: 14094087--14094143 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
14094077 ATCCTCTCTC
*
14094087 GAGCCATATAA-AAGGAAGCTTACAAA
1 GAGCCAT-TAACAA-GAAGCTCACAAA
14094113 GAGCCATTAATCAAGAAGCTCACAAA
1 GAGCCATTAA-CAAGAAGCTCACAAA
14094139 GAGCC
1 GAGCC
14094144 TTTCAGGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 3 0.11
26 23 0.82
27 2 0.07
ACGTcount: A:0.46, C:0.21, G:0.19, T:0.14
Consensus pattern (25 bp):
GAGCCATTAACAAGAAGCTCACAAA
Found at i:14094223 original size:26 final size:26
Alignment explanation
Indices: 14094174--14094260 Score: 88
Period size: 26 Copynumber: 3.4 Consensus size: 26
14094164 ATGTATAACG
* **
14094174 GGAAGCTCACACAGAG-CCATAATCA
1 GGAAGCTCACAAAGAGTCTTTAATCA
* *
14094199 GGAAGTTTACAAAGAAGT-TTTAATCA
1 GGAAGCTCACAAAG-AGTCTTTAATCA
* *
14094225 GGAAGCTCACAAAGAGTCTTTAAACG
1 GGAAGCTCACAAAGAGTCTTTAATCA
14094251 GGAAGCTCAC
1 GGAAGCTCAC
14094261 GAAAAGCCAT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
25 14 0.28
26 36 0.72
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGTCTTTAATCA
Found at i:14097857 original size:76 final size:76
Alignment explanation
Indices: 14097759--14097926 Score: 275
Period size: 76 Copynumber: 2.2 Consensus size: 76
14097749 ACGCCCTGCG
* * *
14097759 CTAGCCAGATGAACTGATAGATATAAAGAGTGTGCGTAGCTCTAGTTAGATAAACTGACAGAAGT
1 CTAGTCAGATGAACCGATAGATATAAAGAGTGTGCGTAGCTCTAGTAAGATAAACTGACAGAAGT
14097824 TGCACCCAGTA
66 TGCACCCAGTA
*
14097835 CTAGTCAGATGAACCGATAGATATAAAGAGTGTGCGTAGCTCTAGTAAGATAAACTGACAGAATT
1 CTAGTCAGATGAACCGATAGATATAAAGAGTGTGCGTAGCTCTAGTAAGATAAACTGACAGAAGT
*
14097900 TGCACCCAGTG
66 TGCACCCAGTA
*
14097911 CTAGTCGGAT-AACCGA
1 CTAGTCAGATGAACCGA
14097927 CGATGGTTGT
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
75 6 0.07
76 80 0.93
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (76 bp):
CTAGTCAGATGAACCGATAGATATAAAGAGTGTGCGTAGCTCTAGTAAGATAAACTGACAGAAGT
TGCACCCAGTA
Found at i:14097977 original size:35 final size:35
Alignment explanation
Indices: 14097876--14098204 Score: 194
Period size: 35 Copynumber: 9.5 Consensus size: 35
14097866 GTGCGTAGCT
* * * * **
14097876 CTAGTAAGATAAACTGACAGAATTTGCACCCAGTG
1 CTAGTCAGATGAACTGACAGAAGTTGCGCCCAGCA
* * * *
14097911 CTAGTCGGAT-AACCGAC-GATGGTTGTGCCCAGCA
1 CTAGTCAGATGAACTGACAGA-AGTTGCGCCCAGCA
* *
14097945 CTAGTCAGATGAACTGATAGAAGTTGCGCCCAGCG
1 CTAGTCAGATGAACTGACAGAAGTTGCGCCCAGCA
* * *
14097980 CTAGTCAGAT-AA-TCGA-TGATAGTTGGGCCTAGCA
1 CTAGTCAGATGAACT-GACAGA-AGTTGCGCCCAGCA
* * *
14098014 CTAGTCAGATAAACTAACAGAAGTTGCGCCCAGCG
1 CTAGTCAGATGAACTGACAGAAGTTGCGCCCAGCA
* * * *
14098049 CTAGTCGGAT-AACCGAC-GATGGTTGAGCCCAGCA
1 CTAGTCAGATGAACTGACAGA-AGTTGCGCCCAGCA
* * * * *
14098083 CTAGTCATATGAACTAACAGAAGTTGCTCCTAGCG
1 CTAGTCAGATGAACTGACAGAAGTTGCGCCCAGCA
* * * * * *
14098118 CTAATCGGAT-AACCGACATG--GTTGTGCCTAACA
1 CTAGTCAGATGAACTGACA-GAAGTTGCGCCCAGCA
* *
14098151 CTAGTCAGATGAACTAACAGAAGTTGAGCCCAAG-A
1 CTAGTCAGATGAACTGACAGAAGTTGCGCCC-AGCA
* *
14098186 CTAGTCGGATGAACCGACA
1 CTAGTCAGATGAACTGACA
14098205 ATATCAATTA
Statistics
Matches: 220, Mismatches: 58, Indels: 32
0.71 0.19 0.10
Matches are distributed among these distances:
33 25 0.11
34 84 0.38
35 103 0.47
36 8 0.04
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (35 bp):
CTAGTCAGATGAACTGACAGAAGTTGCGCCCAGCA
Found at i:14097977 original size:69 final size:69
Alignment explanation
Indices: 14097876--14098203 Score: 408
Period size: 69 Copynumber: 4.8 Consensus size: 69
14097866 GTGCGTAGCT
* * * * * *
14097876 CTAGTAAGATAAACTGACAGAATTTGCACCCAGTGCTAGTCGGATAACCGACGATGGTTGTGCCC
1 CTAGTCAGATGAACTAACAGAAGTTGCGCCCAGCGCTAGTCGGATAACCGACGATGGTTGTGCCC
14097941 AGCA
66 AGCA
* * * * * * * *
14097945 CTAGTCAGATGAACTGATAGAAGTTGCGCCCAGCGCTAGTCAGATAATCGATGATAGTTGGGCCT
1 CTAGTCAGATGAACTAACAGAAGTTGCGCCCAGCGCTAGTCGGATAACCGACGATGGTTGTGCCC
14098010 AGCA
66 AGCA
* *
14098014 CTAGTCAGATAAACTAACAGAAGTTGCGCCCAGCGCTAGTCGGATAACCGACGATGGTTGAGCCC
1 CTAGTCAGATGAACTAACAGAAGTTGCGCCCAGCGCTAGTCGGATAACCGACGATGGTTGTGCCC
14098079 AGCA
66 AGCA
* * * * *
14098083 CTAGTCATATGAACTAACAGAAGTTGCTCCTAGCGCTAATCGGATAACCGAC-ATGGTTGTGCCT
1 CTAGTCAGATGAACTAACAGAAGTTGCGCCCAGCGCTAGTCGGATAACCGACGATGGTTGTGCCC
*
14098147 AACA
66 AGCA
* *
14098151 CTAGTCAGATGAACTAACAGAAGTTGAGCCCAAG-ACTAGTCGGATGAACCGAC
1 CTAGTCAGATGAACTAACAGAAGTTGCGCCC-AGCGCTAGTCGGAT-AACCGAC
14098204 AATATCAATT
Statistics
Matches: 222, Mismatches: 35, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
68 49 0.22
69 173 0.78
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (69 bp):
CTAGTCAGATGAACTAACAGAAGTTGCGCCCAGCGCTAGTCGGATAACCGACGATGGTTGTGCCC
AGCA
Found at i:14098274 original size:20 final size:20
Alignment explanation
Indices: 14098245--14098282 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14098235 ATCGTATGTC
14098245 ATAACCCAATATCACATTTT
1 ATAACCCAATATCACATTTT
* *
14098265 ATAACTCAATATTACATT
1 ATAACCCAATATCACATT
14098283 CACTTCAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (20 bp):
ATAACCCAATATCACATTTT
Found at i:14103397 original size:762 final size:759
Alignment explanation
Indices: 14101232--14103507 Score: 3239
Period size: 751 Copynumber: 3.0 Consensus size: 759
14101222 TTTACTATTT
* *
14101232 CTGCTTGAGCCACCCAGGTGGTGGAGCTTGGATGGGTTTCGAATTCTGTGGGAAATCTGATAGAA
1 CTGCTTGAGCCACCCAGGTGGT-GAGTTTGGATGGGTTTCGAATTCTATGGGAAATCTGATAGAA
* *
14101297 GTGAGTACCTAATATGGTGGAGTTAGTAGGGGAAATGGTTAGTGGTTTTTTTAAAAAAAAAGAAA
65 GTGGGTACCTAATTTGGTGGAGTTAGTAGGGGAAATGGTTAGTGGTTTTTTT----AAAAAGAAA
*
14101362 ATTTAATTA--TTTTTTTGAAATCCCCAAAAATTCTCTTTTATTTTCTAACGTCTAACGTTTTCT
126 ATTTAATTATTTTTTTTTGAAATCCCCAAAAATTCTCTTTTCTTTTCTAACGTCTAACGTTTTCT
* * *
14101425 TC-CTCCATTCTTAACCTTTGCTTTACAATTATTTCTTCTTCACACCATATTATATGTTTCTTTC
191 TCTC-CCATTCTTCATCTTTGCTTTTCAATTATTTCTTCTTCACACCATATTATATGTTTCTTTC
* * *
14101489 TTTTTGTTCCTTTCCATTTTGCTTTTACTTCTGTTTCAGTTCCCATCTTCTACACAGTCAATTGT
255 TTTTTGTTCCTTTCCCTTTT-CTTTTGCTTCTGTTTCAGTTCCCATCTTCTACACAGTCGATTGT
* * *
14101554 CGTACCTTGTTGGTAAGTGGTTGTGGTGTTTGTGTCAATGGTGGAATTATTTCCTTGTTGGTATA
319 CGTACCTTGTTGGTAAGTGGTTGTGGTGTTTTTGTCAGTGGTGGAATTATTTCCTTGTTGGTATG
**
14101619 GAGAATTATTATGTTCAGGTTGGTTGTAATTGTGGCGTAAGGTTGTTTGATTGCATTCTTTTCTG
384 GAGAATTATTATGTTCAGGTTGGTTGTAATTGTGGCGTAAGGTTGTTTGATTGGGTTCTTTTCTG
* * * * * *
14101684 TTATTAGGAGAAGATCGTGAAGCATTC-GACAACCCACAAGCAAATTAAATGTGGGTGATGACTG
449 TTATTAGGAGAAGACCGTGAAGCTTTCAG-CGACCCACAAGCAAATTAAGTGTGGGTGGTGGCTG
* *
14101748 TTCGTTTGGGTAAGTGATCGAACACCC-AAAAGGGGTTGAATTTCGGTTTAGTAAGGTGTATGTT
513 TTCGTTTGGGTAAGTGATCGAACACCCAAAAAGGGGTAGAATTTTGGTTTAGTAAGGTGTATGTT
** * *
14101812 AGTGTTTTTAATCATAAGTGTTAATTGGAATTAGTAAATTATTGCTAATTTGGAGGATTAATTAA
578 AGCATTTTTAATCATAAGTGTTAATTGGAATTAGTAAATCATTGCTAATTTGGAGGATTAATTGA
* * *
14101877 TGTTTTTAGGTTCTAGAAGCCTCATGGATGGATTCGCATAAAAAAAGCCAAGGTGTGTAACAAAA
643 TGTTTTTAGGTTCTGGAAGCCTCGTGG-TGGATTCGCATAAAAAAAGCCAAGGTGTGTAACGAAA
* * * *
14101942 ACTAGAAAAATTGA-GAACGGCTAAAAGCCGAAAAATTGGACTGTTGACGCCAC
707 ACTAGAAAAA-TCACGAATGGCTGAAAGCCGAAAAATTGGACTGTCGACGCCAC
* ** * *
14101995 CTCCTTGAGCTGCCCAGGTGGTGAAGTTTGGATAGGTTTCGAATTATATGGGAAATCTGATAGAA
1 CTGCTTGAGCCACCCAGGTGGTG-AGTTTGGATGGGTTTCGAATTCTATGGGAAATCTGATAGAA
* * *
14102060 GTGGGCACCTAATTTGGTGGAGTTAGTGGGGGAAATGGTTAATGGTTTTCTTTAAAAAGAAAATT
65 GTGGGTACCTAATTTGGTGGAGTTAGTAGGGGAAATGGTTAGTGGTTTT-TTTAAAAAGAAAATT
* * ** * *
14102125 TAGTAATTATTTTTTTGAAAT-CCTTAAAATT-TCTGTTCTTGTT-TTACGTCTAACGTTTTCTT
129 TAATTATT-TTTTTTTGAAATCCCCAAAAATTCTCTTTTCTT-TTCTAACGTCTAACGTTTTCTT
* * *
14102187 -TCCCCATTCTTCATCTTTGCTTTTCAATTTTTTCTTCTTTACACCATATTATTTGTTTCTTTCT
192 CT-CCCATTCTTCATCTTTGCTTTTCAATTATTTCTTCTTCACACCATATTATATGTTTCTTTCT
* * * *
14102251 TTTTGTTTCTTT-CC----CTTTTGCTTTTGTTTCAG-T----TCTTCTACATAGTCGATTGTTG
256 TTTTGTTCCTTTCCCTTTTCTTTTGCTTCTGTTTCAGTTCCCATCTTCTACACAGTCGATTGTCG
*
14102306 TACCTTGTTGGTAAGTGGTTGTGGTGTTTGTTGTCAGTGGTGGAATTATTTCCTTATTGGTATGG
321 TACCTTGTTGGTAAGTGGTTGTGGTGTTT-TTGTCAGTGGTGGAATTATTTCCTTGTTGGTATGG
* *
14102371 AGAATTATTATGTTCAGGTTGGTTGTAATTATGGTGTAAGGTTGTTTGATTGGGTT-TTTTCTGT
385 AGAATTATTATGTTCAGGTTGGTTGTAATTGTGGCGTAAGGTTGTTTGATTGGGTTCTTTTCTGT
* * * * * *
14102435 TACTAGGAGAAGACCGTGAAGTTTTCAGTGACCCACTAGCAAATTAAGTATGGGTGGTGGTTGTT
450 TATTAGGAGAAGACCGTGAAGCTTTCAGCGACCCACAAGCAAATTAAGTGTGGGTGGTGGCTGTT
* * *
14102500 CGTTTGGGCAAGTGATCGAACACCCAAAAAAGGGTAGAATTTTGGTTAAGTAAGGTGTATGTTAG
515 CGTTTGGGTAAGTGATCGAACACCCAAAAAGGGGTAGAATTTTGGTTTAGTAAGGTGTATGTTAG
* *
14102565 CATTTTTAATCATAAGTGTTAATTGGAATTAGTAAATCATTGATAATTTGGAGGATTAATTGACG
580 CATTTTTAATCATAAGTGTTAATTGGAATTAGTAAATCATTGCTAATTTGGAGGATTAATTGATG
*
14102630 TTTTTAGGTTCTGGAAGCCTCGTGAGTGGATTCGGATAAAAAAAGCCAAGGTGTGTAACGAAAAC
645 TTTTTAGGTTCTGGAAGCCTCGTG-GTGGATTCGCATAAAAAAAGCCAAGGTGTGTAACGAAAAC
* *
14102695 TAGAAAAATCACGAATGGCTGAAAGCCAAAAAATTGGATTGTCGACGCCAC
709 TAGAAAAATCACGAATGGCTGAAAGCCGAAAAATTGGACTGTCGACGCCAC
* * *
14102746 CTGCTTGAGCCACCTAGGTGGTAGAGTTTGCATGGGTTTCGAATTCTATGGGAAATCTAATAGAA
1 CTGCTTGAGCCACCCAGGTGGT-GAGTTTGGATGGGTTTCGAATTCTATGGGAAATCTGATAGAA
* * *
14102811 GTGGGTACCTAATTTGGTGAAGTTAGTAGGGGAAATGGTTAGTGGTTTTTTTAGAAAAGTAATTT
65 GTGGGTACCTAATTTGGTGGAGTTAGTAGGGGAAATGGTTAGTGGTTTTTTTA-AAAAGAAAATT
* * *
14102876 TAATTATTTTTTTTTGAAATCCCCAAAAATTCACTTTTCTTTTCTGACGTCTAATGTTTTCTTCT
129 TAATTATTTTTTTTTGAAATCCCCAAAAATTCTCTTTTCTTTTCTAACGTCTAACGTTTTCTTCT
** *
14102941 CCCATTCTTCATCTTCACTTTTCAATTATTCCTTCTTCACACCATATTATATGTTT-TTTCTTTT
194 CCCATTCTTCATCTTTGCTTTTCAATTATTTCTTCTTCACACCATATTATATGTTTCTTTCTTTT
14103005 TGTTCCTTTCCCTTTTTCTTTTGCTTCTGTTTCAGTTCCCATCTTCTACACAGTCGATTGTCGTA
259 TGTTCCTTTCCC-TTTTCTTTTGCTTCTGTTTCAGTTCCCATCTTCTACACAGTCGATTGTCGTA
* * *
14103070 GCTTGTTAGTAAGTGGTTTTGGTGTTTTTGTCAGTGGTGGAATTATTTCCTTGTTGGTATGGAGA
323 CCTTGTTGGTAAGTGGTTGTGGTGTTTTTGTCAGTGGTGGAATTATTTCCTTGTTGGTATGGAGA
* * *
14103135 ATTATTATGTTTAGGTTGGTTGTAATTGTGACGTAAGATTGTTTGATTGGGTTCTTTTCTGTTAT
388 ATTATTATGTTCAGGTTGGTTGTAATTGTGGCGTAAGGTTGTTTGATTGGGTTCTTTTCTGTTAT
* * * *
14103200 TAGGAGAAAACCATGAAGCTTTCAGCGACCTACCAGCAAATTAAGTGTGGGTGGTGGCTGTTCGT
453 TAGGAGAAGACCGTGAAGCTTTCAGCGACCCACAAGCAAATTAAGTGTGGGTGGTGGCTGTTCGT
*
14103265 TTGGGTAAGTGATCGAACACCCAAAAAGGGGTAGAATTTTGGTTTAGTAAGGTGTATGTTTGCAT
518 TTGGGTAAGTGATCGAACACCCAAAAAGGGGTAGAATTTTGGTTTAGTAAGGTGTATGTTAGCAT
* * * *
14103330 TTTTAATCATAAGTATTACTTGGAATTAATAAATCATTGCTAATTTAGATGG-TTAATTGATGTT
583 TTTTAATCATAAGTGTTAATTGGAATTAGTAAATCATTGCTAATTTGGA-GGATTAATTGATGTT
* *
14103394 TTTAGGTTTTGGAAGCCTCGTGGGTGGATTCGCATAAAAAAAACCAAGGTGTGTAACGAAAACTA
647 TTTAGGTTCTGGAAGCCTCGT-GGTGGATTCGCATAAAAAAAGCCAAGGTGTGTAACGAAAACTA
* * * *
14103459 GAAAAATCACAAATGGCTGAAAGCTGAAAAACTGGACTGTCGACACCAC
711 GAAAAATCACGAATGGCTGAAAGCCGAAAAATTGGACTGTCGACGCCAC
14103508 ATGACCGTGT
Statistics
Matches: 1338, Mismatches: 142, Indels: 67
0.86 0.09 0.04
Matches are distributed among these distances:
750 149 0.11
751 420 0.31
752 78 0.06
753 1 0.00
754 1 0.00
755 16 0.01
757 17 0.01
758 1 0.00
760 17 0.01
761 176 0.13
762 344 0.26
763 115 0.09
764 3 0.00
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (759 bp):
CTGCTTGAGCCACCCAGGTGGTGAGTTTGGATGGGTTTCGAATTCTATGGGAAATCTGATAGAAG
TGGGTACCTAATTTGGTGGAGTTAGTAGGGGAAATGGTTAGTGGTTTTTTTAAAAAGAAAATTTA
ATTATTTTTTTTTGAAATCCCCAAAAATTCTCTTTTCTTTTCTAACGTCTAACGTTTTCTTCTCC
CATTCTTCATCTTTGCTTTTCAATTATTTCTTCTTCACACCATATTATATGTTTCTTTCTTTTTG
TTCCTTTCCCTTTTCTTTTGCTTCTGTTTCAGTTCCCATCTTCTACACAGTCGATTGTCGTACCT
TGTTGGTAAGTGGTTGTGGTGTTTTTGTCAGTGGTGGAATTATTTCCTTGTTGGTATGGAGAATT
ATTATGTTCAGGTTGGTTGTAATTGTGGCGTAAGGTTGTTTGATTGGGTTCTTTTCTGTTATTAG
GAGAAGACCGTGAAGCTTTCAGCGACCCACAAGCAAATTAAGTGTGGGTGGTGGCTGTTCGTTTG
GGTAAGTGATCGAACACCCAAAAAGGGGTAGAATTTTGGTTTAGTAAGGTGTATGTTAGCATTTT
TAATCATAAGTGTTAATTGGAATTAGTAAATCATTGCTAATTTGGAGGATTAATTGATGTTTTTA
GGTTCTGGAAGCCTCGTGGTGGATTCGCATAAAAAAAGCCAAGGTGTGTAACGAAAACTAGAAAA
ATCACGAATGGCTGAAAGCCGAAAAATTGGACTGTCGACGCCAC
Found at i:14105962 original size:25 final size:26
Alignment explanation
Indices: 14105928--14105999 Score: 92
Period size: 27 Copynumber: 2.8 Consensus size: 26
14105918 TCTTGTACAT
14105928 GTATGCTCACACAAGCTGTG-AATCG
1 GTATGCTCACACAAGCTGTGAAATCG
* * *
14105953 GTATGCTCACACGAGCTATGAAAATGG
1 GTATGCTCACACAAGCTGTG-AAATCG
*
14105980 GTCTGCTCACACAAGCTGTG
1 GTATGCTCACACAAGCTGTG
14106000 GGTCAAAACG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 18 0.46
27 21 0.54
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (26 bp):
GTATGCTCACACAAGCTGTGAAATCG
Found at i:14107064 original size:22 final size:23
Alignment explanation
Indices: 14107039--14107087 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
14107029 CATACTTTGA
*
14107039 TTTTT-TTAGATGT-TTCTGTTGT
1 TTTTTCTTA-ATGTATTCTGGTGT
*
14107061 TTTTTCTTAATGTATTGTGGTGT
1 TTTTTCTTAATGTATTCTGGTGT
14107084 TTTT
1 TTTT
14107088 ATTTTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.10, C:0.04, G:0.18, T:0.67
Consensus pattern (23 bp):
TTTTTCTTAATGTATTCTGGTGT
Found at i:14110681 original size:17 final size:18
Alignment explanation
Indices: 14110659--14110696 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
14110649 TTTGGGCCGA
*
14110659 GTGGG-CCACACGGGCGT
1 GTGGGCCCACACAGGCGT
*
14110676 GTGGGCCCACATAGGCGT
1 GTGGGCCCACACAGGCGT
14110694 GTG
1 GTG
14110697 AGTCCATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.13, C:0.26, G:0.45, T:0.16
Consensus pattern (18 bp):
GTGGGCCCACACAGGCGT
Found at i:14112781 original size:61 final size:60
Alignment explanation
Indices: 14112639--14112799 Score: 197
Period size: 61 Copynumber: 2.6 Consensus size: 60
14112629 TTTTTCTAAT
* *
14112639 ATTATATATTATGATTTTTATT-AATTCATATTTTAATAATAATTATATTAAGAATGTTATTAA
1 ATTAT-TATTAT-ATTTTTATTAAATT-ATA-TTTAATAATAATTATATTAAGAATATGATTAA
*
14112702 ATTA-TA-TAT-TATTTTATTAAATTATATTTAATAATAATTATGTTAA-AATATGATTAA
1 ATTATTATTATAT-TTTTATTAAATTATATTTAATAATAATTATATTAAGAATATGATTAA
14112759 ATTATTTATGTATATTTTTATTAAATTATATTTAATAATAA
1 ATTA-TTAT-TATATTTTTATTAAATTATATTTAATAATAA
14112800 ACTTATTAAA
Statistics
Matches: 88, Mismatches: 3, Indels: 16
0.82 0.03 0.15
Matches are distributed among these distances:
57 13 0.15
58 20 0.23
59 12 0.14
60 7 0.08
61 31 0.35
62 1 0.01
63 4 0.05
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.53
Consensus pattern (60 bp):
ATTATTATTATATTTTTATTAAATTATATTTAATAATAATTATATTAAGAATATGATTAA
Found at i:14116122 original size:24 final size:24
Alignment explanation
Indices: 14116090--14116138 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14116080 GGTCCAATCT
14116090 ACTACAACGAATTGTGGCAGATCA
1 ACTACAACGAATTGTGGCAGATCA
14116114 ACTACAACGAATTGTGGCAGATCA
1 ACTACAACGAATTGTGGCAGATCA
14116138 A
1 A
14116139 ATTCCCACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (24 bp):
ACTACAACGAATTGTGGCAGATCA
Found at i:14119694 original size:33 final size:33
Alignment explanation
Indices: 14119657--14119723 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
14119647 TAGATCACAT
14119657 TGTTTCTCCCTATTCCACTCTGATTTTACAAAA
1 TGTTTCTCCCTATTCCACTCTGATTTTACAAAA
* *
14119690 TGTTTCTCTCTATTTCACTCTGATTTTACAAAA
1 TGTTTCTCCCTATTCCACTCTGATTTTACAAAA
14119723 T
1 T
14119724 CACTGTTACG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.24, G:0.06, T:0.46
Consensus pattern (33 bp):
TGTTTCTCCCTATTCCACTCTGATTTTACAAAA
Found at i:14128846 original size:27 final size:27
Alignment explanation
Indices: 14128816--14128868 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
14128806 TCCTTTTAAC
14128816 TTAATTACGATATATTTTCCACATAAT
1 TTAATTACGATATATTTTCCACATAAT
* * *
14128843 TTAATTATGGTATATTTTCCATATAA
1 TTAATTACGATATATTTTCCACATAA
14128869 ACCATTGTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (27 bp):
TTAATTACGATATATTTTCCACATAAT
Found at i:14137684 original size:17 final size:18
Alignment explanation
Indices: 14137649--14137687 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
14137639 GAAATCCTAC
*
14137649 CCATCCAGCCTCTACACT
1 CCATCCAGCCTCAACACT
14137667 CCATCCAGCC-CAACACT
1 CCATCCAGCCTCAACACT
14137684 CCAT
1 CCAT
14137688 GTGGGGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.26, C:0.51, G:0.05, T:0.18
Consensus pattern (18 bp):
CCATCCAGCCTCAACACT
Found at i:14141545 original size:9 final size:9
Alignment explanation
Indices: 14141533--14141568 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
14141523 AATTTTAAAT
14141533 ATTTAATCA
1 ATTTAATCA
14141542 ATTTAATCA
1 ATTTAATCA
14141551 ATTTAATC-
1 ATTTAATCA
*
14141559 ATTTACTCA
1 ATTTAATCA
14141568 A
1 A
14141569 AAACTAACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 7 0.28
9 18 0.72
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (9 bp):
ATTTAATCA
Found at i:14141554 original size:18 final size:17
Alignment explanation
Indices: 14141533--14141568 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14141523 AATTTTAAAT
14141533 ATTTAATCAATTTAATCA
1 ATTTAATC-ATTTAATCA
*
14141551 ATTTAATCATTTACTCA
1 ATTTAATCATTTAATCA
14141568 A
1 A
14141569 AAACTAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTTAATCATTTAATCA
Found at i:14142376 original size:43 final size:43
Alignment explanation
Indices: 14142313--14142514 Score: 219
Period size: 43 Copynumber: 4.7 Consensus size: 43
14142303 ATATTTTGGT
* *
14142313 ATATTCGATGATGCACTGTGTGTACCAGTATAGTTACTTCGAA
1 ATATCCGATGATGCACTGTGTGTACCAGTATAGTTACTTCGAG
* * * * *
14142356 ATATCTGATGATGCA-T-TGTGTGCCAATATAGTTACTTTGGG
1 ATATCCGATGATGCACTGTGTGTACCAGTATAGTTACTTCGAG
* * * *
14142397 ATATCCGATGATGCACTATTTGTGCCAGTATAGTTGCTTCGAG
1 ATATCCGATGATGCACTGTGTGTACCAGTATAGTTACTTCGAG
* ** * * * *
14142440 ATATCTGATTTTGCATTGTGTGTACCAGTATAATTGCTTCGAT
1 ATATCCGATGATGCACTGTGTGTACCAGTATAGTTACTTCGAG
*
14142483 ATATCCGATGATGCACTGTGTGTGCCAGTATA
1 ATATCCGATGATGCACTGTGTGTACCAGTATA
14142515 CATGATTTGG
Statistics
Matches: 130, Mismatches: 27, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
41 34 0.26
42 2 0.02
43 94 0.72
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (43 bp):
ATATCCGATGATGCACTGTGTGTACCAGTATAGTTACTTCGAG
Found at i:14142448 original size:84 final size:85
Alignment explanation
Indices: 14142307--14142514 Score: 274
Period size: 84 Copynumber: 2.4 Consensus size: 85
14142297 CATGTTATAT
* *
14142307 TTTGGTATATTCGATGATGCACTGTGTGTACCAGTATAGTTACTTCGAAATATCTGATGATGCAT
1 TTTGGTATATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGAAATATCTGATGATGCAT
*
14142372 TGTGTG-CCAATATAGTTAC
66 TGTGTGACCAATATAATTAC
* * * * * **
14142391 TTTGGGATATCCGATGATGCACTATTTGTGCCAGTATAGTTGCTTCGAGATATCTGATTTTGCAT
1 TTTGGTATATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGAAATATCTGATGATGCAT
* *
14142456 TGTGTGTACCAGTATAATTGC
66 TGTGTG-ACCAATATAATTAC
* *
14142477 TTCGATATATCCGATGATGCACTGTGTGTGCCAGTATA
1 TTTGGTATATCCGATGATGCACTGTGTGTGCCAGTATA
14142515 CATGATTTGG
Statistics
Matches: 105, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
84 62 0.59
86 43 0.41
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (85 bp):
TTTGGTATATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGAAATATCTGATGATGCAT
TGTGTGACCAATATAATTAC
Found at i:14144767 original size:2 final size:2
Alignment explanation
Indices: 14144760--14144816 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
14144750 GGTATTAGCA
*
14144760 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
14144802 TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG T
14144817 AAAGGATAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.02, C:0.00, G:0.47, T:0.51
Consensus pattern (2 bp):
TG
Found at i:14147802 original size:18 final size:18
Alignment explanation
Indices: 14147779--14147823 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
14147769 CTTAATGGAT
*
14147779 TTACAAGATCATCTAAGA
1 TTACAAAATCATCTAAGA
* *
14147797 TTACAAAATCTTCTAATA
1 TTACAAAATCATCTAAGA
14147815 TTACAAAAT
1 TTACAAAAT
14147824 ATTCACCCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (18 bp):
TTACAAAATCATCTAAGA
Found at i:14148906 original size:25 final size:25
Alignment explanation
Indices: 14148843--14148906 Score: 58
Period size: 25 Copynumber: 2.6 Consensus size: 25
14148833 GATTTAACCG
* * * *
14148843 ATTCATTCTATTATGTTATTTATTG
1 ATTCAATCTATTATGGTATTGATTA
* *
14148868 ATTTAATC-ATTTATGGTCTTGATTA
1 ATTCAATCTA-TTATGGTATTGATTA
14148893 ATTCAATCTATTAT
1 ATTCAATCTATTAT
14148907 TGTTTATAAG
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
24 1 0.03
25 28 0.93
26 1 0.03
ACGTcount: A:0.28, C:0.09, G:0.08, T:0.55
Consensus pattern (25 bp):
ATTCAATCTATTATGGTATTGATTA
Found at i:14152372 original size:13 final size:13
Alignment explanation
Indices: 14152321--14152385 Score: 87
Period size: 13 Copynumber: 5.1 Consensus size: 13
14152311 AGTTCTTCAT
14152321 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
14152334 TG-TTTTGAAAAG
1 TGCTTTTGAAAAG
* *
14152346 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
14152359 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
14152372 TACTTTTGAAAAG
1 TGCTTTTGAAAAG
14152385 T
1 T
14152386 TTGGTTTAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
12 12 0.27
13 32 0.73
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:14153844 original size:13 final size:13
Alignment explanation
Indices: 14153826--14153902 Score: 109
Period size: 13 Copynumber: 5.9 Consensus size: 13
14153816 AGTTCTTCAT
*
14153826 TGCTTTTGAGAAG
1 TGCTTTTCAGAAG
14153839 TGCTTTTCAGAAG
1 TGCTTTTCAGAAG
*
14153852 TGTTTTTCAGAAG
1 TGCTTTTCAGAAG
*
14153865 TGTTTTTCAGAAG
1 TGCTTTTCAGAAG
* *
14153878 TACTTTTGAGAAG
1 TGCTTTTCAGAAG
14153891 TGCTTTTCAGAA
1 TGCTTTTCAGAA
14153903 ATTTGAGTGT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 57 1.00
ACGTcount: A:0.25, C:0.10, G:0.23, T:0.42
Consensus pattern (13 bp):
TGCTTTTCAGAAG
Found at i:14156857 original size:14 final size:13
Alignment explanation
Indices: 14156833--14156890 Score: 57
Period size: 14 Copynumber: 4.5 Consensus size: 13
14156823 AATGAAAATA
*
14156833 TTTTTAATTTAAT
1 TTTTTATTTTAAT
14156846 TTATTTATTTTAAT
1 TT-TTTATTTTAAT
14156860 TTTTTAATTTT-AT
1 TTTTT-ATTTTAAT
*
14156873 CTTTT-TTTTAAT
1 TTTTTATTTTAAT
*
14156885 ATTTTA
1 TTTTTA
14156891 CTATACCTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
11 4 0.11
12 6 0.16
13 11 0.29
14 17 0.45
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTATTTTAAT
Found at i:14156869 original size:27 final size:25
Alignment explanation
Indices: 14156833--14156890 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
14156823 AATGAAAATA
*
14156833 TTTTTAATTTAATTTATTTATTTTAAT
1 TTTTTAATTTAATCT-TTT-TTTTAAT
*
14156860 TTTTTAATTTTATCTTTTTTTTAAT
1 TTTTTAATTTAATCTTTTTTTTAAT
*
14156885 ATTTTA
1 TTTTTA
14156891 CTATACCTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 12 0.43
26 3 0.11
27 13 0.46
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (25 bp):
TTTTTAATTTAATCTTTTTTTTAAT
Found at i:14159783 original size:4 final size:4
Alignment explanation
Indices: 14159774--14159809 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
14159764 TGAATTTTGA
14159774 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
14159810 ATCATCTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:14161607 original size:23 final size:22
Alignment explanation
Indices: 14161564--14161621 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
14161554 AAAGGGTATC
* *
14161564 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
14161585 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
14161608 TGCATATCATATCT
1 TACAAATCATATCT
14161622 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14162275 original size:44 final size:45
Alignment explanation
Indices: 14162227--14162849 Score: 166
Period size: 44 Copynumber: 14.5 Consensus size: 45
14162217 CTTCGATCTG
* * * ** *
14162227 CTCCACTACTGCTTAGAGAGATAAGATCT-GTAATTTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* *
14162271 CTCCATTGCTGCTCAGGGAGATAAGGTCTACAACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCT--AACAATCTTCAACCTA
**** * * *
14162318 CTCCACTGCTGCTCAGGGAGATAAG-TCT-AGTGGCTTAAATCTG
1 CTCCACTGCTGCTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * * * ** ** * * ** *
14162361 CTTCC-CTACTAC-CTTGAGAAGATAAGA-CTCGCCGTATTCGATTTT
1 C-TCCACTGCTGCTC-AG-GGAGATAAGATCTAACAATCTTCAACCTA
* ** * ** *
14162406 TTCCACTATTGCTTAGGGAGATAAGATCT-GTAATTTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * * *
14162450 CTCTACTGCTGCTCAGAGAGATAGGAT-TCACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* *
14162494 TTCCACTGCTGAC-CAGGGAGAT-AG-------GA--TTC-ACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * * *
14162528 TTCCACTGTTGACT-AGGGAGATAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * * * *
14162572 TTCCACTGTTGAC-CAGGGAGGTAGGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * *
14162616 TTCCACTGCTGAC-CAGGGAGATAGGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* *
14162660 TTCCACTGCTGAC-CAGGGAGAT-AG-------GA--TTC-ACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * *
14162694 TTCCACTGCTGAC-CAGGGAGATAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * * *
14162738 TTCCACTGCTGAC-CAGGGAGATAGGA-CTTACAATCTTTAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * * * * * *
14162782 TTCCACTGCTGAC-CAGAGAGGTAGGA-CTTATAATGTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* *
14162826 TTCCACTACTGACT-AGGGAGATAA
1 CTCCACTGCTG-CTCAGGGAGATAA
14162850 AGCTTTGTGA
Statistics
Matches: 464, Mismatches: 79, Indels: 72
0.75 0.13 0.12
Matches are distributed among these distances:
34 52 0.11
35 8 0.02
37 2 0.00
41 2 0.00
42 1 0.00
43 24 0.05
44 321 0.69
45 15 0.03
46 3 0.01
47 36 0.08
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (45 bp):
CTCCACTGCTGCTCAGGGAGATAAGATCTAACAATCTTCAACCTA
Found at i:14162450 original size:179 final size:177
Alignment explanation
Indices: 14162149--14162516 Score: 537
Period size: 179 Copynumber: 2.1 Consensus size: 177
14162139 TTTTCAACCT
* * *
14162149 ACTCAGGGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTACTACCTTTGGAAGATAAGATTCGC
1 ACTCAGGGAGATAAGACTAGTGGCTTAAATCTGCTTCCCTACTACCTTTGGAAGATAAGACTCGC
* *
14162214 CGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCATTG
66 CGTATTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTG
*
14162279 CTGCTCAGGGAGATAAGG-TCTACAACAATCTTCAACCTACTCCACTGCTG
131 CTGCTCAGAGAGAT-AGGAT-T-C-ACAATCTTCAACCTACTCCACTGCTG
*
14162329 -CTCAGGGAGATAAGTCTAGTGGCTTAAATCTGCTTCCCTACTACC-TTGAGAAGATAAGACTCG
1 ACTCAGGGAGATAAGACTAGTGGCTTAAATCTGCTTCCCTACTACCTTTG-GAAGATAAGACTCG
* ** * * *
14162392 CCGTATTCGATTTTTTCCACTATTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCTACT
65 CCGTATTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACT
*
14162457 GCTGCTCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTG
130 GCTGCTCAGAGAGATAGGATTCACAATCTTCAACCTACTCCACTGCTG
14162505 AC-CAGGGAGATA
1 ACTCAGGGAGATA
14162517 GGATTCACCT
Statistics
Matches: 171, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
176 35 0.20
177 2 0.01
178 7 0.04
179 127 0.74
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (177 bp):
ACTCAGGGAGATAAGACTAGTGGCTTAAATCTGCTTCCCTACTACCTTTGGAAGATAAGACTCGC
CGTATTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTG
CTGCTCAGAGAGATAGGATTCACAATCTTCAACCTACTCCACTGCTG
Found at i:14162499 original size:88 final size:86
Alignment explanation
Indices: 14162420--14162849 Score: 409
Period size: 88 Copynumber: 5.1 Consensus size: 86
14162410 ACTATTGCTT
* * *
14162420 AGGGAGATAAGATCTGTAATTTTCAACCTACTCTACTGCTG-CTCAGAGAGATAGGATTCACAAT
1 AGGGAGATAAGA-CTG-AA-TTTCAACCTATTCCACTGCTGACTCAGGGAGATAGGATTCACAAT
*
14162484 CTTCAACCTATTCCACTGCTGACC
63 CTTCAACCTATTCCACTGTTGACC
*
14162508 AGGGAGAT-AG---G-A-TTC-ACCTATTCCACTGTTGACT-AGGGAGATAGGACTT-ACAATCT
1 AGGGAGATAAGACTGAATTTCAACCTATTCCACTGCTGACTCAGGGAGATAGGA-TTCACAATCT
14162564 TCAACCTATTCCACTGTTGACC
65 TCAACCTATTCCACTGTTGACC
* * * *
14162586 AGGGAGGTAGGACTCACAATCTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTCACAAT
1 AGGGAGATAAGACT--GAAT-TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGATTCACAAT
*
14162650 CTTCAACCTATTCCACTGCTGACC
63 CTTCAACCTATTCCACTGTTGACC
14162674 AGGGAGAT-AG---G-A-TTC-ACCTATTCCACTGCTGAC-CAGGGAGATAGGACTT-ACAATCT
1 AGGGAGATAAGACTGAATTTCAACCTATTCCACTGCTGACTCAGGGAGATAGGA-TTCACAATCT
*
14162730 TCAACCTATTCCACTGCTGACC
65 TCAACCTATTCCACTGTTGACC
* * * * * *
14162752 AGGGAGATAGGACTTACAATCTTTAACCTATTCCACTGCTGAC-CAGAGAGGTAGGACTT-ATAA
1 AGGGAGATAAGAC-T-GAAT-TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGA-TTCACAA
* ** *
14162815 TGTTCAACCTATTCCACTACTGACT
62 TCTTCAACCTATTCCACTGTTGACC
14162840 AGGGAGATAA
1 AGGGAGATAA
14162850 AGCTTTGTGA
Statistics
Matches: 292, Mismatches: 25, Indels: 50
0.80 0.07 0.14
Matches are distributed among these distances:
78 127 0.43
79 13 0.04
81 2 0.01
83 1 0.00
85 2 0.01
87 9 0.03
88 138 0.47
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (86 bp):
AGGGAGATAAGACTGAATTTCAACCTATTCCACTGCTGACTCAGGGAGATAGGATTCACAATCTT
CAACCTATTCCACTGTTGACC
Found at i:14162623 original size:122 final size:114
Alignment explanation
Indices: 14162445--14162766 Score: 371
Period size: 122 Copynumber: 2.7 Consensus size: 114
14162435 GTAATTTTCA
* * * *
14162445 ACCTACTCTACTGCTG-CTCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCA
* *
14162509 GGGAGATAGGA-TTC-ACCTATTCCACTGTTGACTAGGGAGATAGGACTTACAATCTTC
65 GGGAGATAGGACTTCAACCTATTCCACTGCTGACCAGGGAGATAGG-------A--TTC
* *
14162566 AACCTATTCCACTGTTGACCAGGGAGGTAGGACTCACAATCTTCAACCTATTCCACTGCTGACCA
1 -ACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCA
14162631 GGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
65 GGGAGATAGG-------A-CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
*
14162689 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAG
14162754 GGAGATAGGACTT
66 GGAGATAGGACTT
14162767 ACAATCTTTA
Statistics
Matches: 178, Mismatches: 11, Indels: 30
0.81 0.05 0.14
Matches are distributed among these distances:
114 3 0.02
115 1 0.01
122 137 0.77
123 4 0.02
125 1 0.01
129 1 0.01
131 3 0.02
132 28 0.16
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (114 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAG
GGAGATAGGACTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
Found at i:14162680 original size:166 final size:166
Alignment explanation
Indices: 14162441--14162848 Score: 656
Period size: 166 Copynumber: 2.5 Consensus size: 166
14162431 ATCTGTAATT
* * *
14162441 TTCAACCTACTCTACTGCTG-CTCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTG
1 TTCAACCTATTCCACTGCTGAC-CAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTG
* *
14162505 ACCAGGGAGATAGGATTCACCTATTCCACTGTTGACTAGGGAGATAGGACTTACAATCTTCAACC
65 ACCAGGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACC
* *
14162570 TATTCCACTGTTGACCAGGGAGGTAGGACTCACAATC
130 TATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
*
14162607 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGA
14162672 CCAGGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCT
66 CCAGGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCT
*
14162737 ATTCCACTGCTGACCAGGGAGATAGGACTTACAATC
131 ATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
* * * * * *
14162773 TTTAACCTATTCCACTGCTGACCAGAGAGGTAGGACTTATAATGTTCAACCTATTCCACTACTGA
1 TTCAACCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGA
*
14162838 CTAGGGAGATA
66 CCAGGGAGATA
14162849 AAGCTTTGTG
Statistics
Matches: 224, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
166 223 1.00
167 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (166 bp):
TTCAACCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGA
CCAGGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCT
ATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
Found at i:14162784 original size:122 final size:122
Alignment explanation
Indices: 14162567--14162807 Score: 419
Period size: 122 Copynumber: 2.0 Consensus size: 122
14162557 ACAATCTTCA
* *
14162567 ACCTATTCCACTGTTGACCAGGGAGGTAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAG
*
14162632 GGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
66 GGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAGAGAGATAGGATTC
*
14162689 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAG
* * *
14162754 GGAGATAGGACTTACAATCTTTAACCTATTCCACTGCTGACCAGAGAGGTAGGA
66 GGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAGAGAGATAGGA
14162808 CTTATAATGT
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
122 112 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (122 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAG
GGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAGAGAGATAGGATTC
Found at i:14168939 original size:23 final size:22
Alignment explanation
Indices: 14168913--14168957 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14168903 AGATTAAATC
14168913 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
14168936 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
14168958 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:14169490 original size:23 final size:23
Alignment explanation
Indices: 14169459--14169509 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
14169449 ACCTACTTCC
* * *
14169459 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTATCGGGATA
14169482 TTACAGTAGTAATTATCGGGATA
1 TTACAGTAGTAATTATCGGGATA
14169505 TTACA
1 TTACA
14169510 CGGTGTACTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (23 bp):
TTACAGTAGTAATTATCGGGATA
Found at i:14171404 original size:21 final size:21
Alignment explanation
Indices: 14171378--14171420 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
14171368 CAACCCAACC
14171378 CAATAAAACTAAAACTAAAGT
1 CAATAAAACTAAAACTAAAGT
14171399 CAATAAAACTAAAACTAAAGT
1 CAATAAAACTAAAACTAAAGT
14171420 C
1 C
14171421 TACCCAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.60, C:0.16, G:0.05, T:0.19
Consensus pattern (21 bp):
CAATAAAACTAAAACTAAAGT
Found at i:14171613 original size:17 final size:17
Alignment explanation
Indices: 14171593--14171655 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
14171583 TAATTTCAAG
14171593 AATTATGTAATGTTTTT
1 AATTATGTAATGTTTTT
* ***
14171610 AATTATGTAGTGATTCAA
1 AATTATGTAATG-TTTTT
*
14171628 AGACTTATGTAATATTTTT
1 A-A-TTATGTAATGTTTTT
14171647 AATTATGTA
1 AATTATGTA
14171656 GTGATTCAAT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 18 0.53
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (17 bp):
AATTATGTAATGTTTTT
Found at i:14171617 original size:37 final size:37
Alignment explanation
Indices: 14171590--14171664 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
14171580 TGTTAATTTC
* *
14171590 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
* *
14171627 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
14171664 A
1 A
14171665 TTCGGGTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (37 bp):
AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
Found at i:14174798 original size:15 final size:16
Alignment explanation
Indices: 14174778--14174807 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14174768 ATATATAATT
14174778 TAATAAA-ATTCTTAA
1 TAATAAATATTCTTAA
14174793 TAATAAATATTCTTA
1 TAATAAATATTCTTA
14174808 TATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATAAATATTCTTAA
Found at i:14176325 original size:49 final size:49
Alignment explanation
Indices: 14176259--14176358 Score: 164
Period size: 49 Copynumber: 2.0 Consensus size: 49
14176249 AAAAATAAAC
* * **
14176259 TAAAATTAAGTTTAATATCATGAATCAAAAGGTGGACACTTTATAAAAT
1 TAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATAAAAT
14176308 TAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATAAAAT
1 TAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATAAAAT
14176357 TA
1 TA
14176359 TAACACATGA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.32
Consensus pattern (49 bp):
TAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATAAAAT
Found at i:14178442 original size:45 final size:45
Alignment explanation
Indices: 14178391--14178483 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
14178381 TTTGTAATGT
*
14178391 TAATTATAAT-TGTTGTAGCATTTGATTAGTTTTTAGTGTTAATTA
1 TAATTATAATGT-TTGTAGCATTTGATTAATTTTTAGTGTTAATTA
14178436 TAATTATAATGTTTGTAGCATTTGATTAATTTTTAGTGTTAATTA
1 TAATTATAATGTTTGTAGCATTTGATTAATTTTTAGTGTTAATTA
14178481 TAA
1 TAA
14178484 ATTTTAGTGT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
45 45 0.98
46 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.14, T:0.53
Consensus pattern (45 bp):
TAATTATAATGTTTGTAGCATTTGATTAATTTTTAGTGTTAATTA
Found at i:14178490 original size:19 final size:19
Alignment explanation
Indices: 14178466--14178502 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
14178456 TTTGATTAAT
14178466 TTTTAGTGTTAATTATAAA
1 TTTTAGTGTTAATTATAAA
14178485 TTTTAGTGTTAATTATAA
1 TTTTAGTGTTAATTATAA
14178503 TTATAATTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (19 bp):
TTTTAGTGTTAATTATAAA
Found at i:14178501 original size:64 final size:64
Alignment explanation
Indices: 14178421--14178547 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 64
14178411 TTTGATTAGT
14178421 TTTTAGTGTTAATTATAATTATAA-TGTTTGTAGCATTTGATTAATTTTTAGTGTTAATTATAAA
1 TTTTAGTGTTAATTATAATTATAATTG-TTGTAGCATTTGATTAATTTTTAGTGTTAATTATAAA
*
14178485 TTTTAGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAATTTTTCGTGTTAATTATAA
1 TTTTAGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAATTTTTAGTGTTAATTATAA
14178548 TTATAATTGT
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
64 59 0.97
65 2 0.03
ACGTcount: A:0.31, C:0.02, G:0.13, T:0.54
Consensus pattern (64 bp):
TTTTAGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAATTTTTAGTGTTAATTATAAA
Found at i:14178527 original size:109 final size:106
Alignment explanation
Indices: 14178360--14178592 Score: 364
Period size: 109 Copynumber: 2.2 Consensus size: 106
14178350 TTACTTTCTT
* *
14178360 TTTTTAGTGATAATTAT-AATTTTTGTAATGTTAATTATAATTGTTGTAGCATTTGATTAGTTTT
1 TTTTTAGTGTTAATTATAAATTTTTGTAATGTTAATTATAATTGTTGTAGCATTTGATTAATTTT
14178424 TAGTGTTAATTATAATTATAA-TGTTTGTAGCATTTGATTAA
66 TAGTGTTAATTATAATTATAATTG-TTGTAGCATTTGATTAA
14178465 TTTTTAGTGTTAATTATAAATTTTAGTGTTAAT-TATAATTATAATTGTTGTAGCATTTGATTAA
1 TTTTTAGTGTTAATTATAAATTTT--TG-TAATGT-TAATTATAATTGTTGTAGCATTTGATTAA
*
14178529 TTTTTCGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAA
62 TTTTTAGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAA
*
14178574 TTTTTCGTGTTAATTATAA
1 TTTTTAGTGTTAATTATAA
14178593 TTATAATGTT
Statistics
Matches: 118, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
105 16 0.14
106 6 0.05
108 3 0.03
109 91 0.77
110 2 0.02
ACGTcount: A:0.30, C:0.03, G:0.13, T:0.54
Consensus pattern (106 bp):
TTTTTAGTGTTAATTATAAATTTTTGTAATGTTAATTATAATTGTTGTAGCATTTGATTAATTTT
TAGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAA
Found at i:14178539 original size:26 final size:26
Alignment explanation
Indices: 14178510--14178584 Score: 65
Period size: 26 Copynumber: 3.2 Consensus size: 26
14178500 TAATTATAAT
14178510 TGTTGTAGCATTTGATTAATTTTTCG
1 TGTTGTAGCATTTGATTAATTTTTCG
* ***
14178536 TG-T-TA--A-TT-A-TAATTATAAT
1 TGTTGTAGCATTTGATTAATTTTTCG
14178555 TGTTGTAGCATTTGATTAATTTTTCG
1 TGTTGTAGCATTTGATTAATTTTTCG
14178581 TGTT
1 TGTT
14178585 AATTATAATT
Statistics
Matches: 34, Mismatches: 8, Indels: 14
0.61 0.14 0.25
Matches are distributed among these distances:
19 8 0.24
20 2 0.06
21 4 0.12
22 1 0.03
23 1 0.03
24 4 0.12
25 2 0.06
26 12 0.35
ACGTcount: A:0.24, C:0.05, G:0.16, T:0.55
Consensus pattern (26 bp):
TGTTGTAGCATTTGATTAATTTTTCG
Found at i:14178545 original size:45 final size:44
Alignment explanation
Indices: 14178485--14178701 Score: 295
Period size: 45 Copynumber: 5.0 Consensus size: 44
14178475 TAATTATAAA
14178485 TTTTAGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAAT
1 TTTTAGTGTTAATTATAATTATAA-TGTTGTAGCATTTGATTAAT
*
14178530 TTTTCGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAAT
1 TTTTAGTGTTAATTATAATTATAA-TGTTGTAGCATTTGATTAAT
*
14178575 TTTTCGTGTTAATTATAATTATAATGTTTGTAGCATTTGATTAAT
1 TTTTAGTGTTAATTATAATTATAATG-TTGTAGCATTTGATTAAT
* *
14178620 TTTTAGTGTTAATTATAAATTTTAGTG-T-TA--A-TT-A-TAAT
1 TTTTAGTGTTAATTAT-AATTATAATGTTGTAGCATTTGATTAAT
*
14178658 TTCTAGTGTTAATTATAATTATAATGTTTGTAGCATTTGATTAA
1 TTTTAGTGTTAATTATAATTATAATG-TTGTAGCATTTGATTAA
14178702 AAAACTTTTT
Statistics
Matches: 155, Mismatches: 7, Indels: 20
0.85 0.04 0.11
Matches are distributed among these distances:
37 8 0.05
38 19 0.12
39 2 0.01
40 4 0.03
41 1 0.01
42 1 0.01
43 4 0.03
44 4 0.03
45 104 0.67
46 8 0.05
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.53
Consensus pattern (44 bp):
TTTTAGTGTTAATTATAATTATAATGTTGTAGCATTTGATTAAT
Found at i:14178676 original size:19 final size:18
Alignment explanation
Indices: 14178620--14178677 Score: 98
Period size: 19 Copynumber: 3.1 Consensus size: 18
14178610 TTTGATTAAT
14178620 TTTTAGTGTTAATTATAAA
1 TTTTAGTGTTAATTAT-AA
14178639 TTTTAGTGTTAATTATAA
1 TTTTAGTGTTAATTATAA
14178657 TTTCTAGTGTTAATTATAA
1 TTT-TAGTGTTAATTATAA
14178676 TT
1 TT
14178678 ATAATGTTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.13
19 33 0.87
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (18 bp):
TTTTAGTGTTAATTATAA
Found at i:14178798 original size:47 final size:47
Alignment explanation
Indices: 14178746--14178845 Score: 139
Period size: 48 Copynumber: 2.1 Consensus size: 47
14178736 TAATTTTTGT
* * * *
14178746 ATTGTT-AATTATATTTTTTTATCAAACAATATAAGTAATATAAAAAC
1 ATTGTTCAAATATAATTTTTAATCAAAAAATATAAGTAATAT-AAAAC
*
14178793 ATTGTTCAAATATAATTTTTAATCAAAAAATTTAAGTAATATAAAAC
1 ATTGTTCAAATATAATTTTTAATCAAAAAATATAAGTAATATAAAAC
14178840 ATTGTT
1 ATTGTT
14178846 TGAAGACCAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 17 0.36
48 30 0.64
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.42
Consensus pattern (47 bp):
ATTGTTCAAATATAATTTTTAATCAAAAAATATAAGTAATATAAAAC
Found at i:14178959 original size:17 final size:17
Alignment explanation
Indices: 14178937--14178972 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14178927 GTTTTAAATG
14178937 AAACATATCGAAAATAA
1 AAACATATCGAAAATAA
* *
14178954 AAACATATTGAAACTAA
1 AAACATATCGAAAATAA
14178971 AA
1 AA
14178973 TATAACCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.64, C:0.11, G:0.06, T:0.19
Consensus pattern (17 bp):
AAACATATCGAAAATAA
Found at i:14179246 original size:10 final size:10
Alignment explanation
Indices: 14179231--14179269 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
14179221 CGTGGGATAC
14179231 CATACAGAAA
1 CATACAGAAA
14179241 CATACAGAAA
1 CATACAGAAA
* *
14179251 CATATAGAGA
1 CATACAGAAA
14179261 CATACAGAA
1 CATACAGAA
14179270 TATTAACATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.56, C:0.18, G:0.13, T:0.13
Consensus pattern (10 bp):
CATACAGAAA
Found at i:14179328 original size:25 final size:25
Alignment explanation
Indices: 14179248--14179338 Score: 110
Period size: 25 Copynumber: 3.6 Consensus size: 25
14179238 AAACATACAG
* *
14179248 AAACATATAGAGACATACAGAATAT
1 AAACATACAGAAACATACAGAATAT
* * *
14179273 TAACATACAGAAACGTAAATTGAATAT
1 AAACATACAGAAACATACA--GAATAT
*
14179300 AAACATATAGAAACATACAGAATAT
1 AAACATACAGAAACATACAGAATAT
14179325 AAACATACAGAAAC
1 AAACATACAGAAAC
14179339 CATTTCCACT
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 33 0.61
27 21 0.39
ACGTcount: A:0.57, C:0.13, G:0.10, T:0.20
Consensus pattern (25 bp):
AAACATACAGAAACATACAGAATAT
Found at i:14180980 original size:12 final size:12
Alignment explanation
Indices: 14180941--14180981 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
14180931 CAAAATAATT
14180941 ACAAAGATGCAA
1 ACAAAGATGCAA
*
14180953 ACAAACCAT-C-A
1 ACAAA-GATGCAA
14180964 ACAAAGATGCAA
1 ACAAAGATGCAA
14180976 ACAAAG
1 ACAAAG
14180982 CTGATGTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 2 0.08
11 7 0.29
12 13 0.54
13 2 0.08
ACGTcount: A:0.59, C:0.22, G:0.12, T:0.07
Consensus pattern (12 bp):
ACAAAGATGCAA
Found at i:14183162 original size:7 final size:7
Alignment explanation
Indices: 14183150--14183182 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
14183140 TAGTCGATTC
14183150 GTATTTA
1 GTATTTA
14183157 GTATTTA
1 GTATTTA
14183164 GTATTTA
1 GTATTTA
14183171 GTATTTA
1 GTATTTA
14183178 GTATT
1 GTATT
14183183 ATGTATTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:14186212 original size:126 final size:125
Alignment explanation
Indices: 14185987--14186403 Score: 683
Period size: 126 Copynumber: 3.3 Consensus size: 125
14185977 CAGGCCAAAT
* * *
14185987 AAGAACTACTGTAGCAAAATAGCGTTCACGTGGGAGCTTCTTTCAGTACTTTTGTTGACAAAGCA
1 AAGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAC-AAGCA
14186052 TCCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTC
65 TCCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTC
* * *
14186113 AAGAACTACTGTAGCAAAAGAACGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAGAGCT
1 AAGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACA-AGCA
*
14186178 TCCTACTTAAAGCGTTTTTAACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTC
65 TCCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTC
* * *
14186239 AGGAACTACTGTAGCAAAAGAGCTTCCACGTGGGAGCTTCTTTTAGTACTTTTGCTGACAATGCA
1 AAGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA-GCA
*
14186304 TCCTACTTAAAGCGTTTTTGACACTATTTACTCAGAAACGTCTTCTCGAAATTATTTTTT-
65 TCCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTC
*
14186364 TAGTAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
1 AAG-AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
14186404 TTTTAAATTA
Statistics
Matches: 270, Mismatches: 18, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
125 3 0.01
126 267 0.99
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (125 bp):
AAGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAGCAT
CCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTC
Found at i:14186575 original size:96 final size:96
Alignment explanation
Indices: 14186446--14186743 Score: 429
Period size: 96 Copynumber: 3.1 Consensus size: 96
14186436 CATAAACTCC
* * *
14186446 AAACCCTAATTTATTTTAGTTTGTCCTTAAAAACCTTAAACACTAAACCCTAATCTAATTTTTTT
1 AAACCCTAATTTATTTGAGTTTTTCCTTAAAAACCTTAAACACTAAACCCTAATCTAA-TTTTTA
14186511 AAAATTTATAATTAATTTACTCAAGTAACCCT
65 AAAATTTATAATTAATTTACTCAAGTAACCCT
* *
14186543 AAACCCTAATTTATTTGA-TTTTTCCTTAAAAACCCTT-AACCCTAAACCCTAATCTGATTTTTA
1 AAACCCTAATTTATTTGAGTTTTTCCTTAAAAA-CCTTAAACACTAAACCCTAATCTAATTTTTA
14186606 AAAATTTATAATTAATTTACTCAAGTAACCCT
65 AAAATTTATAATTAATTTACTCAAGTAACCCT
* * * * * *
14186638 AAACCCTAATTTAATTGATTTTTTCCTTAAAAACCATAAACACGAATCCCTAATCTAATTTTAAA
1 AAACCCTAATTTATTTGAGTTTTTCCTTAAAAACCTTAAACACTAAACCCTAATCTAATTTTTAA
* * * *
14186703 AAATTTATAATTAATTTAATTAAGAAACACT
66 AAATTTATAATTAATTTACTCAAGTAACCCT
14186734 AAACCCTAAT
1 AAACCCTAAT
14186744 CCCTTATTTA
Statistics
Matches: 182, Mismatches: 16, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
95 57 0.31
96 104 0.57
97 21 0.12
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.38
Consensus pattern (96 bp):
AAACCCTAATTTATTTGAGTTTTTCCTTAAAAACCTTAAACACTAAACCCTAATCTAATTTTTAA
AAATTTATAATTAATTTACTCAAGTAACCCT
Found at i:14186803 original size:6 final size:6
Alignment explanation
Indices: 14186794--14186827 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
14186784 AAAACTCAAA
*
14186794 AACCCT AACCCT AAACCCT AACCTT AACCCT AAC
1 AACCCT AACCCT -AACCCT AACCCT AACCCT AAC
14186828 GCAAAGAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.18
Consensus pattern (6 bp):
AACCCT
Found at i:14187833 original size:18 final size:17
Alignment explanation
Indices: 14187797--14187835 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
14187787 TAATGTATGA
14187797 TATTTAAAATTGTTTAT
1 TATTTAAAATTGTTTAT
* *
14187814 TATTTAGAATTTTATTAT
1 TATTTAAAATTGT-TTAT
14187832 TATT
1 TATT
14187836 AATGACAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
TATTTAAAATTGTTTAT
Found at i:14189284 original size:27 final size:25
Alignment explanation
Indices: 14189242--14189293 Score: 59
Period size: 27 Copynumber: 2.0 Consensus size: 25
14189232 CTCAATTATT
* **
14189242 AAAAAATTTCATTTTAGGCACCCAA
1 AAAAAATTTCAATTTAAACACCCAA
14189267 AAAAAAGTTTACAATTTAAACACCCAA
1 AAAAAA-TTT-CAATTTAAACACCCAA
14189294 GTTACATAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 6 0.27
26 3 0.14
27 13 0.59
ACGTcount: A:0.50, C:0.19, G:0.06, T:0.25
Consensus pattern (25 bp):
AAAAAATTTCAATTTAAACACCCAA
Found at i:14190919 original size:22 final size:22
Alignment explanation
Indices: 14190894--14190937 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14190884 GAGGAAGATA
14190894 GACGATGAGGGA-AGGGAGAGGG
1 GACGATGAGGGAGAGGGA-AGGG
* *
14190916 GACGGTGGGGGAGAGGGAAGGG
1 GACGATGAGGGAGAGGGAAGGG
14190938 ACAGTGACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.27, C:0.05, G:0.64, T:0.05
Consensus pattern (22 bp):
GACGATGAGGGAGAGGGAAGGG
Found at i:14192683 original size:21 final size:21
Alignment explanation
Indices: 14192653--14192692 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14192643 TTAATATTAA
14192653 TATTAATATAAAATTTAAATT
1 TATTAATATAAAATTTAAATT
* * *
14192674 TATTATTATATATTTTAAA
1 TATTAATATAAAATTTAAA
14192693 AAATATTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TATTAATATAAAATTTAAATT
Found at i:14193409 original size:29 final size:30
Alignment explanation
Indices: 14193366--14193432 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
14193356 ATAAAGAGAT
14193366 TAAATT-TTTAAAAATACAAATACAA-AGAC
1 TAAATTCTTTAAAAATACAAATACAAGA-AC
* * *
14193395 TAAATTCTTT-AAAATATAATTACATGAAC
1 TAAATTCTTTAAAAATACAAATACAAGAAC
14193424 TAAATTCTT
1 TAAATTCTT
14193433 AAATTTCGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 29 0.88
30 4 0.12
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.36
Consensus pattern (30 bp):
TAAATTCTTTAAAAATACAAATACAAGAAC
Found at i:14194877 original size:13 final size:13
Alignment explanation
Indices: 14194861--14194887 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14194851 CTTAAGTTTG
14194861 GCTTCAATGTTCA
1 GCTTCAATGTTCA
14194874 GCTTCAATGTTCA
1 GCTTCAATGTTCA
14194887 G
1 G
14194888 TTTGGTACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (13 bp):
GCTTCAATGTTCA
Found at i:14195911 original size:15 final size:16
Alignment explanation
Indices: 14195882--14195916 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
14195872 CCATGTTAGT
14195882 AAAAATAAAATAATAA
1 AAAAATAAAATAATAA
*
14195898 AAAAATCAAA-AATAA
1 AAAAATAAAATAATAA
14195913 AAAA
1 AAAA
14195917 TAATTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (16 bp):
AAAAATAAAATAATAA
Found at i:14196496 original size:19 final size:18
Alignment explanation
Indices: 14196414--14196504 Score: 73
Period size: 19 Copynumber: 4.9 Consensus size: 18
14196404 AAAAATGAAA
*
14196414 AAAAAGTACAAAAATATTT
1 AAAAATTACAAAAA-ATTT
14196433 AAAAATTACAAAAAATAATT
1 AAAAATTACAAAAAAT--TT
*
14196453 AAGGAAA-T--AAAAAATAT
1 AA--AAATTACAAAAAATTT
14196470 -AAAATTACAAAAAATTT
1 AAAAATTACAAAAAATTT
14196487 AAAAATTTACTAAAAAAT
1 AAAAA-TTAC-AAAAAAT
14196505 AAAAAATAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 19
0.73 0.04 0.23
Matches are distributed among these distances:
14 3 0.05
15 1 0.02
16 1 0.02
17 9 0.15
18 6 0.10
19 24 0.41
20 11 0.19
21 1 0.02
22 3 0.05
ACGTcount: A:0.67, C:0.04, G:0.03, T:0.25
Consensus pattern (18 bp):
AAAAATTACAAAAAATTT
Found at i:14196507 original size:18 final size:17
Alignment explanation
Indices: 14196460--14196523 Score: 64
Period size: 14 Copynumber: 3.8 Consensus size: 17
14196450 ATTAAGGAAA
14196460 TAAAAAATATAAAATTAC
1 TAAAAAATA-AAAATTAC
14196478 -AAAAAATTTAAAAATTTAC
1 TAAAAAA--TAAAAA-TTAC
14196497 TAAAAAATAAAAA--A-
1 TAAAAAATAAAAATTAC
14196511 TAAAAAATAAAAA
1 TAAAAAATAAAAA
14196524 ATATAATATT
Statistics
Matches: 42, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
14 13 0.31
15 1 0.02
17 6 0.14
18 10 0.24
19 6 0.14
20 6 0.14
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (17 bp):
TAAAAAATAAAAATTAC
Found at i:14196509 original size:19 final size:19
Alignment explanation
Indices: 14196460--14196511 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
14196450 ATTAAGGAAA
*
14196460 TAAAAAATATAAAA-TTAC
1 TAAAAAATAAAAAATTTAC
*
14196478 -AAAAAATTTAAAAATTTAC
1 TAAAAAA-TAAAAAATTTAC
14196497 TAAAAAATAAAAAAT
1 TAAAAAATAAAAAAT
14196512 AAAAAATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 6 0.21
18 5 0.18
19 11 0.39
20 6 0.21
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (19 bp):
TAAAAAATAAAAAATTTAC
Found at i:14196515 original size:6 final size:7
Alignment explanation
Indices: 14196497--14196526 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
14196487 AAAAATTTAC
14196497 TAAAAAA
1 TAAAAAA
14196504 TAAAAAA
1 TAAAAAA
14196511 TAAAAAA
1 TAAAAAA
14196518 TAAAAAA
1 TAAAAAA
14196525 TA
1 TA
14196527 TAATATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAAAAA
Found at i:14196733 original size:21 final size:21
Alignment explanation
Indices: 14196691--14196733 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
14196681 TTTTTTACAA
*
14196691 ATTATTTAAATAATGTTATTT
1 ATTATTTAAATAATATTATTT
* *
14196712 ATTATTTAAATATTATTTTTT
1 ATTATTTAAATAATATTATTT
14196733 A
1 A
14196734 GAAATAGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
ATTATTTAAATAATATTATTT
Found at i:14200702 original size:15 final size:15
Alignment explanation
Indices: 14200682--14200713 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
14200672 TTGGTGGTGA
14200682 TTAAGTCAAATTGGT
1 TTAAGTCAAATTGGT
14200697 TTAAGTCAAATTGGT
1 TTAAGTCAAATTGGT
14200712 TT
1 TT
14200714 TCTAAATAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (15 bp):
TTAAGTCAAATTGGT
Found at i:14200835 original size:5 final size:5
Alignment explanation
Indices: 14200825--14200849 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14200815 CTTGTTATTG
14200825 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
14200850 TGCCAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:14202651 original size:50 final size:50
Alignment explanation
Indices: 14202410--14202651 Score: 274
Period size: 50 Copynumber: 4.9 Consensus size: 50
14202400 GATAATAACA
* * * *
14202410 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA--TGTTTTCT-GTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCG--G
* * ** * *
14202459 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
* * * ** *
14202509 TGCCCATGTCATGTCCCAGACATTGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
* * *
14202559 TGCCAACGCCATGTCCCAGACATGTTCTTACATGAGACCTCTTATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
14202609 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
14202652 TACCCAAATG
Statistics
Matches: 160, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 34 0.21
50 121 0.76
51 4 0.03
52 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
Found at i:14205972 original size:21 final size:22
Alignment explanation
Indices: 14205939--14205979 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
14205929 TTTAAATTAA
*
14205939 TTTAAATTATTATTAAATATTT
1 TTTAAATTATTATAAAATATTT
14205961 TTTAAATT-TTATAAAATAT
1 TTTAAATTATTATAAAATAT
14205980 ATTCATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTAAATTATTATAAAATATTT
Found at i:14209706 original size:38 final size:38
Alignment explanation
Indices: 14209656--14209834 Score: 134
Period size: 38 Copynumber: 4.6 Consensus size: 38
14209646 ATAGTATTAT
*
14209656 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATTCATATAAGAATATTTA
**** *
14209693 ATATTAAGAATTTTATTAAA-TCATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTCATATAAGAATATT---TA
* * * *
14209733 ATATTTAATAATAATTATTTTAAATT-ATATTA-TATAGTATTA
1 ATA-TTAAGAAT--TT-TATTAAATTCATATAAGAATA-T-TTA
*
14209775 TATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATTCATATAAGAATATTTA
14209813 ATATTAAGAATTTTATTAAATT
1 ATATTAAGAATTTTATTAAATT
14209835 ATCTATTTTT
Statistics
Matches: 109, Mismatches: 18, Indels: 29
0.70 0.12 0.19
Matches are distributed among these distances:
37 25 0.23
38 35 0.32
39 8 0.07
40 7 0.06
41 9 0.08
42 4 0.04
43 8 0.07
44 11 0.10
45 2 0.02
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (38 bp):
ATATTAAGAATTTTATTAAATTCATATAAGAATATTTA
Found at i:14209720 original size:120 final size:120
Alignment explanation
Indices: 14209587--14210118 Score: 902
Period size: 120 Copynumber: 4.4 Consensus size: 120
14209577 CAAACTTTAG
14209587 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
*
14209652 TTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
* *
14209707 ATTAAATCATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTATATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
*
14209772 TTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
* *
14209827 ATTAAATTATCTATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
*
14209892 TTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
* *
14209947 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
* * * * * *
14210012 TCATATATTATTATTTTAGTAAATTCAGATAAAAATATTGATTATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
* *
14210067 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTAT-TTTAAAT
14210119 ATGATTAAAT
Statistics
Matches: 390, Mismatches: 21, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
120 385 0.99
121 5 0.01
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (120 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
Found at i:14209737 original size:16 final size:17
Alignment explanation
Indices: 14209703--14209738 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
14209693 ATATTAAGAA
14209703 TTTTATTAAATCATATAT
1 TTTTATTAAAT-ATATAT
14209721 TTTTATTAAAT-TATAT
1 TTTTATTAAATATATAT
14209737 TT
1 TT
14209739 AATAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
18 11 0.61
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTATTAAATATATAT
Found at i:14210090 original size:18 final size:17
Alignment explanation
Indices: 14210062--14210096 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14210052 ATTATTAAGA
*
14210062 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14210079 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14210097 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14210287 original size:39 final size:40
Alignment explanation
Indices: 14210244--14210348 Score: 104
Period size: 44 Copynumber: 2.5 Consensus size: 40
14210234 TTCCATTATG
14210244 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* * *** *
14210283 CTATTACGCCTATATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
14210328 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
14210349 ACACCTCTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
39 14 0.27
40 5 0.10
44 17 0.33
45 16 0.31
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:14210346 original size:45 final size:44
Alignment explanation
Indices: 14210242--14210351 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 44
14210232 TTTTCCATTA
14210242 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * * ***
14210281 TACTATTACGCCTATATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
14210326 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
14210352 CCTCTATTCC
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
39 15 0.27
40 1 0.02
44 16 0.29
45 24 0.43
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:14210351 original size:16 final size:16
Alignment explanation
Indices: 14210330--14210386 Score: 96
Period size: 16 Copynumber: 3.6 Consensus size: 16
14210320 TTGATTTGCT
14210330 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
14210346 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
14210362 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
14210378 AATACACCT
1 ATTACACCT
14210387 TTAATCCAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.30, C:0.37, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:14210391 original size:16 final size:16
Alignment explanation
Indices: 14210332--14210399 Score: 91
Period size: 16 Copynumber: 4.2 Consensus size: 16
14210322 GATTTGCTAT
* *
14210332 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
* *
14210348 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
14210364 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
14210380 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
14210396 TACA
1 TACA
14210400 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:14212952 original size:37 final size:37
Alignment explanation
Indices: 14212876--14212952 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 37
14212866 CATACATACG
*
14212876 TTTTATAATATATACATATACGTACACATTTTTTAATT
1 TTTTATAATATATACATATACG-ACACATTTTATAATT
* *
14212914 TTTTATAA-ATATATATATAC-ACATACTTTTATATATT
1 TTTTATAATATATACATATACGACACA-TTTTATA-ATT
14212951 TT
1 TT
14212953 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
35 4 0.12
36 6 0.18
37 16 0.47
38 8 0.24
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.52
Consensus pattern (37 bp):
TTTTATAATATATACATATACGACACATTTTATAATT
Found at i:14213060 original size:27 final size:27
Alignment explanation
Indices: 14213030--14213097 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 27
14213020 TATATTTTTT
14213030 ATTTTTTATAATTCACATACATATA-TA
1 ATTTTTTATAATT-ACATACATATATTA
* *
14213057 ATTTTCTTAT-ATGTACATATATATATTT
1 ATTTT-TTATAAT-TACATACATATATTA
*
14213085 ATATTTTATAATT
1 ATTTTTTATAATT
14213098 TTTATCTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
27 22 0.65
28 12 0.35
ACGTcount: A:0.37, C:0.07, G:0.01, T:0.54
Consensus pattern (27 bp):
ATTTTTTATAATTACATACATATATTA
Found at i:14213257 original size:3 final size:3
Alignment explanation
Indices: 14213251--14213304 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
14213241 TTATCTTTTC
14213251 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14213299 ATT ATT
1 ATT ATT
14213305 GTTCTTGACC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14216682 original size:14 final size:15
Alignment explanation
Indices: 14216658--14216690 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14216648 TCCCAAGCTG
*
14216658 GGAAGGACCTTATGT
1 GGAAGGACCTTATCT
14216673 GGAA-GACCTTATCT
1 GGAAGGACCTTATCT
14216687 GGAA
1 GGAA
14216691 AAGCGTCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.24
Consensus pattern (15 bp):
GGAAGGACCTTATCT
Found at i:14216791 original size:11 final size:11
Alignment explanation
Indices: 14216770--14216808 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
14216760 AAATATTAAA
14216770 AAAAAGCAAAAG
1 AAAAAG-AAAAG
14216782 AAAGAA-AAAAG
1 AAA-AAGAAAAG
14216793 AAAAAGAAAAG
1 AAAAAGAAAAG
14216804 AAAAA
1 AAAAA
14216809 TGAGAGGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.08
11 18 0.72
12 3 0.12
13 2 0.08
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:14216791 original size:17 final size:18
Alignment explanation
Indices: 14216769--14216808 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
14216759 AAAATATTAA
*
14216769 AAAAAAGCAAAAG-AAAG
1 AAAAAAGAAAAAGAAAAG
14216786 AAAAAAGAAAAAGAAAAG
1 AAAAAAGAAAAAGAAAAG
14216804 AAAAA
1 AAAAA
14216809 TGAGAGGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAAAAGAAAAG
Found at i:14218341 original size:92 final size:92
Alignment explanation
Indices: 14218184--14218369 Score: 266
Period size: 92 Copynumber: 2.0 Consensus size: 92
14218174 ATAGTGGAAT
* * * *
14218184 AGATTGAAGCCATAACAGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTCAAGCCACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACGA
* *
14218249 CAGCGAATCTTGTTTCTCCAACATTGC
66 CAGCGAATCTTGGTTCCCCAACATTGC
* *
14218276 AGATTCAAGCCACAAC-GACGAATCTTACTTCTCTAGCGGTGCAGTGGAATAGATTGAAGCTACG
1 AGATTCAAGCCACAACAG-CGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACG
* *
14218340 ACGGCGAATCTTGGTTCCCCTACATTGC
65 ACAGCGAATCTTGGTTCCCCAACATTGC
14218368 AG
1 AG
14218370 TCAAATAGAT
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
91 1 0.01
92 82 0.99
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (92 bp):
AGATTCAAGCCACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACGA
CAGCGAATCTTGGTTCCCCAACATTGC
Found at i:14218606 original size:29 final size:29
Alignment explanation
Indices: 14218550--14218606 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
14218540 GTCGAAACCG
* *
14218550 CTTTTTTGAAAACAAAAATTTAGTGTCGA
1 CTTTTTTGAAAACAAAAAATTAGAGTCGA
*
14218579 CTTTTTT-AAAACACAAAAATTGGAGTCG
1 CTTTTTTGAAAACA-AAAAATTAGAGTCG
14218607 CCACCTATCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (29 bp):
CTTTTTTGAAAACAAAAAATTAGAGTCGA
Found at i:14219442 original size:14 final size:14
Alignment explanation
Indices: 14219422--14219455 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
14219412 AAAAGTTAAA
*
14219422 AAAAAAATAAATTAG
1 AAAAAAA-AATTTAG
14219437 AAAAAAAAATTTAG
1 AAAAAAAAATTTAG
14219451 AAAAA
1 AAAAA
14219456 CGCATGAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (14 bp):
AAAAAAAAATTTAG
Found at i:14219553 original size:24 final size:22
Alignment explanation
Indices: 14219502--14219555 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
14219492 TTAAACTGTA
**
14219502 TATATATTAAAAATATGCATAT
1 TATATATGGAAAATATGCATAT
*
14219524 TATATATGGAAAATATGCGTAT
1 TATATATGGAAAATATGCATAT
14219546 GTACTATATG
1 -TA-TATATG
14219556 AAAGATGCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 19 0.70
23 2 0.07
24 6 0.22
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.39
Consensus pattern (22 bp):
TATATATGGAAAATATGCATAT
Found at i:14221135 original size:132 final size:132
Alignment explanation
Indices: 14220937--14222085 Score: 1636
Period size: 132 Copynumber: 8.7 Consensus size: 132
14220927 AAATCTGCTT
* * ** * *
14220937 TCTTCGATCGATTCCACTGCCGACCAGGGA-ATTAGAATTACTGGCTTCAATATACTCCACTGTA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTA
* * *
14221001 ACCTCAGAGAGGTAAAATCTACCATCTTCGATCTACTCCACTACTG-TCTAGGGAGATAAGATCT
65 ACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCT-TAGGGAGATAAGATCT
14221065 GTAA
129 GTAA
* * * *
14221069 TATTCAATCTATTCCACTGCTGCCTAGGAAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
** *
14221134 CCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGT
14221199 AA
131 AA
* * *
14221201 TCTTCAATTTATTGCACTGTTGCTCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * *
14221266 CCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGT
14221331 AA
131 AA
* * * * *
14221333 TCTTCGATCTATTCCACTATTACTCAGGGAGATAAAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
** * *
14221398 CCTCAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGT
14221463 AA
131 AA
* *
14221465 TCTTCAATCTATTCCACTATTGCTCAGGGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTA
* * ** *
14221529 ACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTATTTAGGGAGACAAGA----
65 ACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTG
14221590 -AA
130 TAA
* * *
14221592 TCTTCAATCTATTTCACTGCTGCCCAGGGCAG-TAGAATTACTGGCTTCAATGTACTCCATTGTA
1 TCTTCAATCTATTCCACTGTTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* * *
14221656 A-CTACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATAT
65 ACCT-CAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCT
*
14221720 GAAA
129 GTAA
* * *
14221724 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACCGGCGTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * * * *
14221789 CCACAAGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGACAATATCTGA
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGT
14221854 AA
131 AA
14221856 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * *
14221921 CCACAGGGAGGTAAAATCTGCCATCTTTGATCTTCTCCACTACTGCTTAGGGAGATAAGATCTGA
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGT
14221986 AA
131 AA
* *
14221988 TCTTCAATCTACTCCACTGTTGCCCAGGGA-AGTAGAATTATTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTA
*
14222052 ACCACAGGGAGGTAAAATCTGCCATCTTTGATCT
65 ACCTCAGGGAGGTAAAATCTGCCATCTTTGATCT
14222086 GTTTCACTGT
Statistics
Matches: 935, Mismatches: 68, Indels: 28
0.91 0.07 0.03
Matches are distributed among these distances:
126 1 0.00
127 114 0.12
128 1 0.00
131 4 0.00
132 812 0.87
133 3 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGT
AA
Found at i:14221271 original size:44 final size:44
Alignment explanation
Indices: 14220961--14221548 Score: 150
Period size: 44 Copynumber: 13.4 Consensus size: 44
14220951 CACTGCCGAC
*
14220961 CAGGGA-ATTAGAAT-TACTGGCTTCAATATACTCCACTGTAACCT
1 CAGGGAGA-TAGAATCTACTGGCTTCAATCTACTCCACTGT-ACCT
* * * *** * *
14221005 CAGAGAGGTAAAATCTACCATCTTCGATCTACTCCAC--TACTGT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAC-CT
* * * *
14221048 CTAGGGAGATA-AGATCTGTAAT--ATTCAATCTATTCCACTGCTGCCT
1 C-AGGGAGATAGA-ATC--TACTGGCTTCAATCTACTCCACTG-TACCT
* *
14221094 -AGGAAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAACCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGT-ACCT
* * * *** ** *
14221137 CAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCAC--TACTGCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAC--CT
* * * * * **
14221181 TAGGGAGATA-AGATCTGTAAT--CTTCAATTTATTGCACTGTTGCT
1 CAGGGAGATAGA-ATC--TACTGGCTTCAATCTACTCCACTGTACCT
*
14221225 CAGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAACCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGT-ACCT
* * ** *** * * *
14221269 CAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACT-GTACCT
* * * *
14221314 -AGGGAGATA-AGATCTGTAAT--CTTCGATCTATTCCACTATTA-CT
1 CAGGGAGATAGA-ATC--TACTGGCTTCAATCTACTCCACT-GTACCT
* *
14221357 CAGGGAGATAAAAT-TACTGGCTTCAATGTACTCCACTGTAACCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGT-ACCT
* * * *** * * *
14221401 CAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTGCCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACT-GTACCT
* * * **
14221446 -AGGGAGATA-AGATCTGTAAT--CTTCAATCTATTCCACTATTGCT
1 CAGGGAGATAGA-ATC--TACTGGCTTCAATCTACTCCACTGTACCT
* *
14221489 CAGGGA-AGTAGAAT-TACTGGCTTCAATGTACTCCACTGTAACCA
1 CAGGGAGA-TAGAATCTACTGGCTTCAATCTACTCCACTGT-ACCT
* *
14221533 CAGGGAGGTAAAATCT
1 CAGGGAGATAGAATCT
14221549 GCCATCTTTG
Statistics
Matches: 387, Mismatches: 106, Indels: 101
0.65 0.18 0.17
Matches are distributed among these distances:
41 12 0.03
42 6 0.02
43 79 0.20
44 205 0.53
45 75 0.19
46 8 0.02
47 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (44 bp):
CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTACCT
Found at i:14221731 original size:523 final size:524
Alignment explanation
Indices: 14220960--14222086 Score: 1729
Period size: 523 Copynumber: 2.1 Consensus size: 524
14220950 CCACTGCCGA
* * * * *
14220960 CCAGGGAATTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCA
1 CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA
* * * *
14221025 TCTTCGATCTACTCCACTACTGTCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCT
66 TCTTTGATCTGCTCCACTACTATCTAGGGAGACAAGA----TAATATTCAATCTATTCCACTGCT
*
14221090 GCCTAGGAAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCAC
127 GCCCAGGAAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCAC
* * * * *
14221155 CATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATTTATTGCACTG
192 CATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTG
* * * * * *
14221220 TTGCTCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
257 CTGCCCAGGGAGATAGAATTACCGGCGTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCC
* * *
14221285 GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCGATCTATTCCAC
322 GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCAC
* *
14221350 TATTACTCAGGGAGATAAAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAAT
387 TATTACCCAGGGAGATAAAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT
* *
14221415 CCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCC
452 CCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGAAATCTTCAATCTACTCC
14221480 ACTATTGC
517 ACTATTGC
*
14221488 TCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA
1 CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA
* * *
14221553 TCTTTGATCTGCTCCACTACTATTTAGGGAGACAAGA-AATCTTCAATCTATTTCACTGCTGCCC
66 TCTTTGATCTGCTCCACTACTATCTAGGGAGACAAGATAATATTCAATCTATTCCACTGCTGCCC
* * **
14221617 AGGGCAG-TAGAATTACTGGCTTCAATGTACTCCATTGTAA-CTACAGGGAGGTAAAATCTGCCA
131 A-GGAAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCT-CAGGGAGGTAAAATCCACCA
14221680 TCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCT
194 TCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCT
*
14221745 GCCCAGGGAGATAGAATTACCGGCGTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCTGC
259 GCCCAGGGAGATAGAATTACCGGCGTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCCGC
* * * *
14221810 CATCTTTGATCTACTCCACTACTGCTTAGGGAGACAATATCTGAAATCTTCAATCTATTCCACTG
324 CATCTTCGATCTACTCCACTACTGCCTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTA
* * *
14221875 TTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT
389 TTACCCAGGGAGATAAAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCC
* * * *
14221940 GCCATCTTTGATCTTCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTACTCCAC
454 ACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGAAATCTTCAATCTACTCCAC
*
14222005 TGTTGC
519 TATTGC
*
14222011 CCAGGGAAGTAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA
1 CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA
14222076 TCTTTGATCTG
66 TCTTTGATCTG
14222087 TTTCACTGTC
Statistics
Matches: 546, Mismatches: 51, Indels: 9
0.90 0.08 0.01
Matches are distributed among these distances:
522 2 0.00
523 449 0.82
524 4 0.01
528 91 0.17
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (524 bp):
CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA
TCTTTGATCTGCTCCACTACTATCTAGGGAGACAAGATAATATTCAATCTATTCCACTGCTGCCC
AGGAAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATC
TTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCTGC
CCAGGGAGATAGAATTACCGGCGTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCCGCCA
TCTTCGATCTACTCCACTACTGCCTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTATT
ACCCAGGGAGATAAAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCAC
CATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTA
TTGC
Found at i:14221885 original size:44 final size:43
Alignment explanation
Indices: 14221705--14222017 Score: 150
Period size: 44 Copynumber: 7.1 Consensus size: 43
14221695 ACTACTGCTT
* * * *
14221705 AGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAA-ATCTGAAATCTTCAATCTACTCCACTGTTGCCC
*** * * **
14221749 AGGGAGATAGAAT-T-ACCGGCGTCAATGTACTCCACTGTAACCAC
1 AGGGAGATA-AATCTGA-AATCTTCAATCTACTCCACTGTTGCC-C
* * ** ** ** **
14221793 AAGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTT
1 AGGGAGAT-AAATCTGAAATCTTCAATCTACTCCACTGTTGCCC
* *
14221837 AGGGAGACAATATCTGAAATCTTCAATCTATTCCACTGTTGCCC
1 AGGGAGATAA-ATCTGAAATCTTCAATCTACTCCACTGTTGCCC
* * **
14221881 AGGGAGATAGAATTACTG---GCTTCAATGTACTCCACTGTAACCAC
1 AGGGAGATA-AA-T-CTGAAATCTTCAATCTACTCCACTGTTGCC-C
* ** ** * ** **
14221925 AGGGAGGTAAAATCTGCCATCTTTGATCTTCTCCACTACTGCTT
1 AGGGAGAT-AAATCTGAAATCTTCAATCTACTCCACTGTTGCCC
14221969 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGTTGCCC
1 AGGGAGATAA-ATCTGAAATCTTCAATCTACTCCACTGTTGCCC
14222013 AGGGA
1 AGGGA
14222018 AGTAGAATTA
Statistics
Matches: 188, Mismatches: 65, Indels: 32
0.66 0.23 0.11
Matches are distributed among these distances:
42 4 0.02
43 42 0.22
44 104 0.55
45 35 0.19
46 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
AGGGAGATAAATCTGAAATCTTCAATCTACTCCACTGTTGCCC
Found at i:14221916 original size:43 final size:43
Alignment explanation
Indices: 14221857--14222050 Score: 117
Period size: 44 Copynumber: 4.4 Consensus size: 43
14221847 TATCTGAAAT
*
14221857 CTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGG
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAGAATTACTGG
* ** * * * ***
14221900 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAGAAT-TACTGG
** * ** ** *
14221945 CTTTGATCTTCTCCACTACTGCTTAGGGAGATA-AGA-T-CTGAAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAGA-ATTACTG---G
*
14221989 CTTCAATCTACTCCACTGTTGCCCAGGGA-AGTAGAATTATTGG
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGA-TAGAATTACTGG
*
14222032 CTTCAATGTACTCCACTGT
1 CTTCAATCTACTCCACTGT
14222051 AACCACAGGG
Statistics
Matches: 108, Mismatches: 33, Indels: 20
0.67 0.20 0.12
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 39 0.36
44 47 0.44
45 18 0.17
46 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGTTGCCCAGGGAGATAGAATTACTGG
Found at i:14223460 original size:14 final size:15
Alignment explanation
Indices: 14223437--14223473 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
14223427 AGCCTCTCCA
*
14223437 TTTTCCTTTTTCAT-
1 TTTTCATTTTTCATC
14223451 TTTTCA-TTTTCATC
1 TTTTCATTTTTCATC
14223465 TTTTCATTT
1 TTTTCATTT
14223474 CTCACATCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 7 0.35
14 11 0.55
15 2 0.10
ACGTcount: A:0.11, C:0.19, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTCATTTTTCATC
Found at i:14226400 original size:19 final size:19
Alignment explanation
Indices: 14226360--14226401 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
14226350 ATAATCTTTG
* *
14226360 ATGCATATGATGTAATGTA
1 ATGCAAATGATGAAATGTA
14226379 ATGCAAATGCATGAAATG-A
1 ATGCAAATG-ATGAAATGTA
14226398 ATGC
1 ATGC
14226402 GAAAAGAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (19 bp):
ATGCAAATGATGAAATGTA
Found at i:14226450 original size:13 final size:13
Alignment explanation
Indices: 14226432--14226457 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14226422 GTTCAATTTT
14226432 TTTACTAGAAAAC
1 TTTACTAGAAAAC
14226445 TTTACTAGAAAAC
1 TTTACTAGAAAAC
14226458 AAATCTCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
TTTACTAGAAAAC
Found at i:14227497 original size:29 final size:29
Alignment explanation
Indices: 14227440--14227497 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
14227430 TGTCGAAACC
* *
14227440 ACTTTTTTGAAAACAAAAATTTAGTGTCG
1 ACTTTTTTGAAAACAAAAAATTAGAGTCG
*
14227469 ACTTTTTT-AAAACACAAAAATTGGAGTCG
1 ACTTTTTTGAAAACA-AAAAATTAGAGTCG
14227498 CCACCGATCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (29 bp):
ACTTTTTTGAAAACAAAAAATTAGAGTCG
Found at i:14228449 original size:24 final size:22
Alignment explanation
Indices: 14228398--14228451 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
14228388 AAACTGTATA
**
14228398 TATATATTAAAAATATGCATAT
1 TATATATGGAAAATATGCATAT
*
14228420 TATATATGGAAAATATGCGTAT
1 TATATATGGAAAATATGCATAT
14228442 GTACTATATG
1 -TA-TATATG
14228452 AAAGATGCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 19 0.70
23 2 0.07
24 6 0.22
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.39
Consensus pattern (22 bp):
TATATATGGAAAATATGCATAT
Found at i:14228485 original size:3 final size:3
Alignment explanation
Indices: 14228477--14228515 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
14228467 TAAATATGGC
14228477 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14228516 GCTAATAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14229612 original size:50 final size:50
Alignment explanation
Indices: 14229558--14229792 Score: 200
Period size: 50 Copynumber: 4.9 Consensus size: 50
14229548 TTTGGCATTA
* *
14229558 TAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAACAGTG
1 TAGTGGAACAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAACAGTG
* * **
14229608 TAGTGGAACAGATTGAAGCTACGACGGTGAATCTTGTTTCTCC-AACA---
1 TAGTGGAACAGATTGAAGCCACAACGGTGAATCTTACTTC-CCTAACAGTG
* * *
14229655 T--T-G--CAGATTGAAGCCACAACGGTGAATCTTACTTCTCTAGCGGTG
1 TAGTGGAACAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAACAGTG
* * ** * *
14229700 TAGTGGAACAGATTGAAGCTACGACGGTGAATCTTGGTTCCCCAACATTG
1 TAGTGGAACAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAACAGTG
* ** * * **
14229750 CAGTCAAATAGATTGAAGCCAAAATAGTGAATCTTACTTCCCT
1 TAGTGGAACAGATTGAAGCCACAACGGTGAATCTTACTTCCCT
14229793 GACGTTATAG
Statistics
Matches: 141, Mismatches: 34, Indels: 20
0.72 0.17 0.10
Matches are distributed among these distances:
41 1 0.01
42 30 0.21
44 1 0.01
45 2 0.01
47 2 0.01
48 1 0.01
50 102 0.72
51 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (50 bp):
TAGTGGAACAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAACAGTG
Found at i:14229724 original size:92 final size:92
Alignment explanation
Indices: 14229567--14229752 Score: 318
Period size: 92 Copynumber: 2.0 Consensus size: 92
14229557 ATAGTGGAAT
14229567 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTAACAGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTAACAGTGTAGTGGAACAGATTGAAGCTACGA
* *
14229632 CGGTGAATCTTGTTTCTCCAACATTGC
66 CGGTGAATCTTGGTTCCCCAACATTGC
* * * *
14229659 AGATTGAAGCCACAACGGTGAATCTTACTTCTCTAGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTAACAGTGTAGTGGAACAGATTGAAGCTACGA
14229724 CGGTGAATCTTGGTTCCCCAACATTGC
66 CGGTGAATCTTGGTTCCCCAACATTGC
14229751 AG
1 AG
14229753 TCAAATAGAT
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 88 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (92 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCTAACAGTGTAGTGGAACAGATTGAAGCTACGA
CGGTGAATCTTGGTTCCCCAACATTGC
Found at i:14230040 original size:168 final size:168
Alignment explanation
Indices: 14229745--14230128 Score: 583
Period size: 168 Copynumber: 2.3 Consensus size: 168
14229735 GGTTCCCCAA
**
14229745 CATTGCAGTCAAATAGATTGAAGCCAAAATAGTGAATCTTACTTCCCTGACGTTATAGCGGAGCA
1 CATTGCAGTCAAATAGATTGAAGCCAAAACGGTGAATCTTACTTCCCTGACGTTATAGCGGAGCA
* * * * *
14229810 GGTTAAAGCTGAGGGTAGCGAATCTTATTTCCTTGGCGTTAGGACTTGAAATAGTAGAAGTGGAG
66 GATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGTAGAAGTGGAG
* * *
14229875 CGAATTGAAGCTGTGGGCAGCGAATCCTATCTCTTTGG
131 CAAATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTGG
*
14229913 CATTGCATTCAAATAGATTGAAGCCAAAACGGTGAATCTTACTTCCCTGACGTTATAGCGGAGCA
1 CATTGCAGTCAAATAGATTGAAGCCAAAACGGTGAATCTTACTTCCCTGACGTTATAGCGGAGCA
*
14229978 GATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTT-AGATTAGCT-GAAGTGG
66 GATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGA-AATAG-TAGAAGTGG
14230041 AGCAAATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTGG
129 AGCAAATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTGG
* ** * *
14230081 CATTACAGTGGAATAGATTGAAGCCACAACGATGAATCTTACTTCCCT
1 CATTGCAGTCAAATAGATTGAAGCCAAAACGGTGAATCTTACTTCCCT
14230129 AGCGGTGTAG
Statistics
Matches: 196, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
167 1 0.01
168 194 0.99
169 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (168 bp):
CATTGCAGTCAAATAGATTGAAGCCAAAACGGTGAATCTTACTTCCCTGACGTTATAGCGGAGCA
GATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGTAGAAGTGGAG
CAAATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTGG
Found at i:14230168 original size:50 final size:50
Alignment explanation
Indices: 14230087--14230369 Score: 208
Period size: 50 Copynumber: 5.7 Consensus size: 50
14230077 TTGGCATTAC
* ** *
14230087 AGTGGAATAGATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAACGGTGT
* * ** ** *
14230137 AGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCTCC-AACATTGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTC-CCTAACGGTGT
** * * *
14230187 AGTTAAATAGATTGAAGCCACAACTGCGAATCTTACTTCCCTATCGGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAACGGTGT
* * * * * ** ** **
14230237 AGTAGAACAGATTGAAGCTACGACGGTGAATTTTGTTTCCCTAACATTAC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAACGGTGT
** * * * *** *
14230287 AGTTAAATAGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTGGTCT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAACGGTGT
* *
14230337 AGTGGAACAGATTGAAGCTACGACGGCGAATCT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCT
14230370 GGTTTCCCCG
Statistics
Matches: 170, Mismatches: 61, Indels: 4
0.72 0.26 0.02
Matches are distributed among these distances:
49 2 0.01
50 166 0.98
51 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (50 bp):
AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAACGGTGT
Found at i:14230222 original size:100 final size:99
Alignment explanation
Indices: 14230092--14230409 Score: 476
Period size: 100 Copynumber: 3.2 Consensus size: 99
14230082 ATTACAGTGG
14230092 AATAGATTGAAGCCACAAC-GATGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCT
1 AATAGATTGAAGCCACAACTG-TGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCT
14230156 ACGACGGCGAATCTTGTTTCTCCAACATTGCAGTTA
65 ACGACGGCGAATCTTGTTTC-CCAACATTGCAGTTA
* * *
14230192 AATAGATTGAAGCCACAACTGCGAATCTTACTTCCCTATCGGTGTAGTAGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACTGTGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTA
* * *
14230257 CGACGGTGAATTTTGTTTCCCTAACATTACAGTTA
66 CGACGGCGAATCTTGTTTCCC-AACATTGCAGTTA
* * *
14230292 AATAGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTGGTCTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACTGTGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTA
* * *
14230357 CGACGGCGAATCTGGTTTCCCCGACATTGTAGTTA
66 CGACGGCGAATCTTGTTT-CCCAACATTGCAGTTA
*
14230392 AATAGATTAAAGCCACAA
1 AATAGATTGAAGCCACAA
14230410 TGGCAAATCT
Statistics
Matches: 196, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
99 2 0.01
100 190 0.97
101 4 0.02
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (99 bp):
AATAGATTGAAGCCACAACTGTGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTA
CGACGGCGAATCTTGTTTCCCAACATTGCAGTTA
Found at i:14230399 original size:50 final size:50
Alignment explanation
Indices: 14230145--14230404 Score: 180
Period size: 50 Copynumber: 5.2 Consensus size: 50
14230135 GTAGTGGAAC
* *
14230145 AGATTGAAGCTACGACGGCGAATCTTGTTTCTCCAACATTGCAGTTAAAT
1 AGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACATTGTAGTTAAAT
* * * ** * * ** *
14230195 AGATTGAAGCCACAACTGCGAATCTTACTTCCCTATCGGTGTAG-TAGAAC
1 AGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACATTGTAGTTA-AAT
* * * **
14230245 AGATTGAAGCTACGACGGTGAATTTTGTTTCCCTAACATTACAGTTAAAT
1 AGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACATTGTAGTTAAAT
* * * * ** ****** * ** *
14230295 AGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTGGTCTAGTGGAAC
1 AGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACATTGTAGTTAAAT
* *
14230345 AGATTGAAGCTACGACGGCGAATCTGGTTTCCCCGACATTGTAGTTAAAT
1 AGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACATTGTAGTTAAAT
*
14230395 AGATTAAAGC
1 AGATTGAAGC
14230405 CACAATGGCA
Statistics
Matches: 150, Mismatches: 58, Indels: 4
0.71 0.27 0.02
Matches are distributed among these distances:
49 2 0.01
50 146 0.97
51 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (50 bp):
AGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACATTGTAGTTAAAT
Found at i:14230443 original size:200 final size:200
Alignment explanation
Indices: 14230081--14230456 Score: 524
Period size: 200 Copynumber: 1.9 Consensus size: 200
14230071 ATCTCTTTGG
* *
14230081 CATTACAGTGGAATAGATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGTAGTGGAACA
1 CATTACAGTGAAATAGATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTCTAGTGGAACA
* * *
14230146 GATTGAAGCTACGACGGCGAATCTTGTTTCTCCAACATTGCAGTTAAATAGATTGAAGCCACAAC
66 GATTGAAGCTACGACGGCGAATCTGGTTTCCCCAACATTGCAGTTAAATAGATTAAAGCCACAAC
* * * ** * *
14230211 TGCGAATCTTACTTCCCTATCGGTGTAGTAGAACAGATTGAAGCTACGACGGTGAATTTTGTTTC
131 TGCAAATCTTACTTCCCTAGCAGTACAGTAGAACAAATTAAAGCTACGACGGTGAATTTTGTTTC
14230276 CCTAA
196 CCTAA
* * *
14230281 CATTACAGTTAAATAGATTGAAGCCACAACTG-TGAATCTTACTTCCCTGGTGGTCTAGTGGAAC
1 CATTACAGTGAAATAGATTGAAGCCACAAC-GATGAATCTTACTTCCCTAGCGGTCTAGTGGAAC
* *
14230345 AGATTGAAGCTACGACGGCGAATCTGGTTTCCCCGACATTGTAGTTAAATAGATTAAAGCCACAA
65 AGATTGAAGCTACGACGGCGAATCTGGTTTCCCCAACATTGCAGTTAAATAGATTAAAGCCACAA
* * *
14230410 -TGGCAAATCTTA-TCTCCTTGGCATTACAGTAGAACAAATTAAAGCTA
130 CT-GCAAATCTTACT-TCCCTAGCAGTACAGTAGAACAAATTAAAGCTA
14230457 AAGGTAGCGA
Statistics
Matches: 153, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
199 2 0.01
200 150 0.98
201 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (200 bp):
CATTACAGTGAAATAGATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTCTAGTGGAACA
GATTGAAGCTACGACGGCGAATCTGGTTTCCCCAACATTGCAGTTAAATAGATTAAAGCCACAAC
TGCAAATCTTACTTCCCTAGCAGTACAGTAGAACAAATTAAAGCTACGACGGTGAATTTTGTTTC
CCTAA
Found at i:14230445 original size:100 final size:99
Alignment explanation
Indices: 14230092--14230478 Score: 401
Period size: 100 Copynumber: 3.9 Consensus size: 99
14230082 ATTACAGTGG
* * *
14230092 AATAGATTGAAGCCACAAC-GATG-AATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGC
1 AATAGATTGAAGCCACAACTG--GCAATCTTACTTCCCTGGCGGT-CAGTAGAACAGATTGAAGC
*
14230155 TACGACGGCGAATCTTGTTTCTCCAACATTGCAGTTA
63 TACGACGGCGAATCTTGTTTCCCCAACATTGCAGTTA
** *
14230192 AATAGATTGAAGCCACAACT-GCGAATCTTACTTCCCTATCGGTGTAGTAGAACAGATTGAAGCT
1 AATAGATTGAAGCCACAACTGGC-AATCTTACTTCCCTGGCGGT-CAGTAGAACAGATTGAAGCT
* * * *
14230256 ACGACGGTGAATTTTGTTTCCCTAACATTACAGTTA
64 ACGACGGCGAATCTTGTTTCCCCAACATTGCAGTTA
* *
14230292 AATAGATTGAAGCCACAACTGTG-AATCTTACTTCCCTGGTGGTCTAGTGGAACAGATTGAAGCT
1 AATAGATTGAAGCCACAACTG-GCAATCTTACTTCCCTGGCGGTC-AGTAGAACAGATTGAAGCT
* * *
14230356 ACGACGGCGAATCTGGTTTCCCCGACATTGTAGTTA
64 ACGACGGCGAATCTTGTTTCCCCAACATTGCAGTTA
* * ** * *
14230392 AATAGATTAAAGCCACAA-TGGCAAATCTTA-TCTCCTTGGCATTACAGTAGAACAAATTAAAGC
1 AATAGATTGAAGCCACAACTGGC-AATCTTACT-TCCCTGGCGGT-CAGTAGAACAGATTGAAGC
* *
14230455 TA-AAGGTAGCGAATCTTGTTTCCC
63 TACGACG--GCGAATCTTGTTTCCC
14230479 TGGCATTGCA
Statistics
Matches: 245, Mismatches: 30, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
98 2 0.01
99 5 0.02
100 221 0.90
101 16 0.07
102 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (99 bp):
AATAGATTGAAGCCACAACTGGCAATCTTACTTCCCTGGCGGTCAGTAGAACAGATTGAAGCTAC
GACGGCGAATCTTGTTTCCCCAACATTGCAGTTA
Found at i:14231309 original size:22 final size:22
Alignment explanation
Indices: 14231249--14231306 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
14231239 AATCTTTAAG
14231249 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
14231268 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
14231290 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
14231307 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:14231553 original size:23 final size:23
Alignment explanation
Indices: 14231509--14231553 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
14231499 TCTTATTTTG
* *
14231509 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
14231532 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
14231554 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:14232250 original size:3 final size:3
Alignment explanation
Indices: 14232244--14232297 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
14232234 TTATCTTTTC
14232244 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14232292 ATT ATT
1 ATT ATT
14232298 GTTCTTGATC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14239726 original size:7 final size:7
Alignment explanation
Indices: 14239700--14239738 Score: 62
Period size: 7 Copynumber: 5.6 Consensus size: 7
14239690 GTGATGTGAG
14239700 AAAATGA
1 AAAATGA
14239707 AAAGATG-
1 AAA-ATGA
14239714 AAAATGA
1 AAAATGA
14239721 AAAATGA
1 AAAATGA
14239728 AAAATGA
1 AAAATGA
14239735 AAAA
1 AAAA
14239739 GTAAAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 3 0.10
7 24 0.80
8 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (7 bp):
AAAATGA
Found at i:14239726 original size:21 final size:21
Alignment explanation
Indices: 14239700--14239746 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
14239690 GTGATGTGAG
*
14239700 AAAATGAAAAGATGAAAATG-A
1 AAAATGAAAA-ATGAAAAAGTA
14239721 AAAATGAAAAATGAAAAAGTA
1 AAAATGAAAAATGAAAAAGTA
14239742 AAAAT
1 AAAAT
14239747 AGAGAGGCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (21 bp):
AAAATGAAAAATGAAAAAGTA
Found at i:14239744 original size:14 final size:14
Alignment explanation
Indices: 14239700--14239746 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
14239690 GTGATGTGAG
*
14239700 AAAATG-AAAAGATG
1 AAAATGAAAAAG-TA
14239714 AAAATGAAAAA-TGA
1 AAAATGAAAAAGT-A
14239728 AAAATGAAAAAGTA
1 AAAATGAAAAAGTA
14239742 AAAAT
1 AAAAT
14239747 AGAGAGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
13 1 0.03
14 23 0.79
15 5 0.17
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
AAAATGAAAAAGTA
Found at i:14241089 original size:44 final size:44
Alignment explanation
Indices: 14241022--14242129 Score: 1019
Period size: 44 Copynumber: 25.0 Consensus size: 44
14241012 GCTAAAAAGC
*** * *
14241022 AGCAGATCTTGTCTTCATGTATTGGTGTGAAGTATATCAAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
*** ***
14241066 AGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATT-GACATGAAGTAGATCGAAGAT
***
14241111 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
* *
14241155 AGCAGATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
*** * *
14241199 AATGGGTCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGGT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
*** * *
14241243 AATGGGTCTTGTCTTCATGTATTGACATAAAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
* * *
14241287 AACAAATTTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
* * * ***
14241331 AGCAGATATTGTCTTCCCAT-AATGGTGGTGAAGTAGATCGAAGA-
1 AGCAGATCTTGTCTT--CATGTATTGACATGAAGTAGATCGAAGAT
* * *
14241375 A-CATGGATCCTATCTTCATGTATTGACATGGAGTAGATC-AGAGAT
1 AGCA--GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
*
14241420 AGCAGATCTTGTCTTCATGTATTGACATGAACTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
* * *
14241464 AGTAGATCTTATCTTCATGTATTGACATGAAGTAGATCGAATAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
*
14241508 -G-ATGGATCTTGTCTTCATGTATTGACATGAAGTAAATC-AGAGAT
1 AGCA--GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
* * *
14241552 AGCAGATCTTGTCTTCATGTACT-AGCGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGA-CATGAAGTAGATCGAAGAT
** * * *
14241596 AATAGATCTTGTCTTCATGTACT-AGCGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGA-CATGAAGTAGATCGAAGAT
* * * * *
14241640 AGCAAATCTTGTCTTTATGTATTGGCGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
* * * * * * * *
14241684 AACAGATCTTGTCTTCCTCTACTGGCAGCGAAGTAGATCAAATAT
1 AGCAGATCTTGTCTTCATGTATTGACA-TGAAGTAGATCGAAGAT
* *
14241729 AACAGATCTTGTCTTCATGTATTGACATGAAATAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
* * * **
14241773 AGCAGATCATGTCTTCATGTATTGGCTTGGTGTAGATCGAAGAAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAG-AT
* *
14241818 GGCAGATCTTGTCTTCATGTATTGACACGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
* *** ***
14241862 AGCAAATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATT-GACATGAAGTAGATCGAAGAT
***
14241907 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
14241951 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
* *** *
14241995 AGCAGATCTTGTCTTTCCA--TACTGGTGGTGAAGAAGATCGAAGAT
1 AGCAGATCTTGTC-TT-CATGTA-TTGACATGAAGTAGATCGAAGAT
***
14242040 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
* * *
14242084 AGCAGATCTTGTCTTCCTGTA-TCAGCAGTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCATGTATTGA-CA-TGAAGTAGATCGAAGAT
14242129 A
1 A
14242130 CAAGTCTTAT
Statistics
Matches: 881, Mismatches: 147, Indels: 71
0.80 0.13 0.06
Matches are distributed among these distances:
42 1 0.00
43 17 0.02
44 634 0.72
45 219 0.25
46 10 0.01
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (44 bp):
AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
Found at i:14241419 original size:133 final size:133
Alignment explanation
Indices: 14241022--14242129 Score: 1154
Period size: 133 Copynumber: 8.3 Consensus size: 133
14241012 GCTAAAAAGC
*** * *
14241022 AGCAGATCTTGTCTTCATGTATTGGTGTGAAGTATATCAAAGATAGCAGATCTTGTCTTCCCATA
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCCATA
* *
14241087 TTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGA
66 ATGGTCGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGA
14241152 GAT
131 GAT
* * *** *
14241155 AGCAGATCTTATCTTCATGTATTGACATGAAGTAGATC-GAAGGTAATGGGTCTTGTCTT--CAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCCCAT
* * * * * * *
14241217 GTATTGACATGAAGTAGATCGAAGGTAATGGGTCTTGTCTTCATGTATTGACATAAAGTAGATCA
65 -AATGGTCGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCA
14241282 GAGAT
129 GAGAT
* * * *
14241287 AACAAATTTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATATTGTCTTCCCATA
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCCATA
* * * *
14241352 ATGGTGGTGAAGTAGATCGAAGA-ACATGGATCCTATCTTCATGTATTGACATGGAGTAGATCAG
66 ATGGTCGTGAAGTAGATCGAAGATA-ATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG
14241416 AGAT
130 AGAT
* * *
14241420 AGCAGATCTTGTCTTCATGTATTGACATGAACTAGATCAGAGATAGTAGATCTTATCTT--CATG
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCCAT-
* * * * * * *
14241483 TATTGACATGAAGTAGATCGAATATGATGGATCTTGTCTTCATGTATTGACATGAAGTAAATCAG
65 AATGGTCGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG
14241548 AGAT
130 AGAT
* * * ** ***
14241552 AGCAGATCTTGTCTTCATGTACT-AGCGTGAAGTAGATC-GAAGAAAATAGATCTTGTCTTCATG
1 AGCAGATCTTGTCTTCATGTATTGA-CATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCCCA
* * * * * *
14241615 TACTAG-CGTGAAGTAGATCGAAGA-AA-GCAAATCTTGTCTTTATGTATTGGCGTGAAGTAGAT
64 TAATGGTCGTGAAGTAGATCGAAGATAATG--GATCTTGTCTTCATGTATTGACATGAAGTAGAT
*
14241677 C-GAAGAA
127 CAG-AGAT
* * * * * * * * *
14241684 AACAGATCTTGTCTTCCTCTACTGGCAGCGAAGTAGATCAAATATAACAGATCTTGTCTT--CAT
1 AGCAGATCTTGTCTTCATGTATTGACA-TGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCCAT
* * * * * *** * * * **
14241747 GTATTGACATGAAATAGATCGAAGATAGCAGATCATGTCTTCATGTATTGGCTTGGTGTAGATC-
65 -AATGGTCGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCA
14241811 GAAGAAT
129 G-AG-AT
* * *
14241818 GGCAGATCTTGTCTTCATGTATTGACACGAAGTAGATC-GAAGATAGCAAATCTTGTCTTCCCAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCCCAT
* *
14241882 ATTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG
65 AATGGTCGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG
14241947 AGAT
130 AGAT
*
14241951 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATC-GAAGATAGCAGATCTTGTCTTTCCAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCCCAT
* * *
14242015 ACTGGTGGTGAAGAAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG
65 AATGGTCGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG
14242080 AGAT
130 AGAT
* * *
14242084 AGCAGATCTTGTCTTCCTGTA-TCAGCAGTGAAGTAGATCAAAGATA
1 AGCAGATCTTGTCTTCATGTATTGA-CA-TGAAGTAGATCAGAGATA
14242130 CAAGTCTTAT
Statistics
Matches: 806, Mismatches: 139, Indels: 59
0.80 0.14 0.06
Matches are distributed among these distances:
130 1 0.00
131 11 0.01
132 287 0.36
133 410 0.51
134 93 0.12
135 4 0.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (133 bp):
AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCCATA
ATGGTCGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGA
GAT
Found at i:14241587 original size:309 final size:309
Alignment explanation
Indices: 14241095--14242122 Score: 1081
Period size: 309 Copynumber: 3.3 Consensus size: 309
14241085 TATTGGTGGT
* ** *
14241095 GAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAG
1 GAAGTAGATCAAAGATAACAGATCTTGTCTTCATGTATTGACATGAAATAGATCAGAGATAGCAG
** * *
14241160 ATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAATGGGTCTTGTCTTCATGTATTGAC
66 ATCTTATCTTCATGTATTGACATGAAGTAGATCGAAAATGATGGATCTTGTCTTCATGTATTGAC
* *** * * * *
14241225 ATGAAGTAGATCGAAGGTAATGGGTCTTGTCTTCATGTATTGACATAAAGTAGATC-AGAGATAA
131 ATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATAGACGTGAAGTAGATCGA-AGATAA
* * * * *
14241289 CAAATTTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATATTGTCTTCCCATAAT
195 TAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCACATAAT
* * ** * *
14241354 GGTGGTGAAGTAGATCGAAGAACATGGATCCTATCTTCATGTATTGACATG-
260 GG-CGTGAAGTAGATCGAAGAAAACAGATCCTATCTTCATCTACTGACA-GC
* * * *
14241405 G-AGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGACATGAACTAGATCAGAGATAGTAG
1 GAAGTAGATCAAAGATAACAGATCTTGTCTTCATGTATTGACATGAAATAGATCAGAGATAGCAG
*
14241469 ATCTTATCTTCATGTATTGACATGAAGTAGATCGAATATGATGGATCTTGTCTTCATGTATTGAC
66 ATCTTATCTTCATGTATTGACATGAAGTAGATCGAAAATGATGGATCTTGTCTTCATGTATTGAC
* *
14241534 ATGAAGTAAATC-AGAGATAGCAGATCTTGTCTTCATGTACTAG-CGTGAAGTAGATCGAAGAAA
131 ATGAAGTAGATCGA-AGATAGCAGATCTTGTCTTCATGTA-TAGACGTGAAGTAGATCGAAGATA
* * * * * **
14241597 ATAGATCTTGTCTTCATGTACT-AGCGTGAAGTAGATC-GAAGAAAGCAAATCTTGTCTTTATGT
194 ATAGATCTTGTCTTCATGTATTGA-CATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCACAT
* * * * *
14241660 ATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTCTACTGGCAGC
257 AATGGCGTGAAGTAGATCGAAGAAAACAGATCCTATCTTCATCTACTGACAGC
*
14241713 GAAGTAGATCAAATATAACAGATCTTGTCTTCATGTATTGACATGAAATAGATC-GAAGATAGCA
1 GAAGTAGATCAAAGATAACAGATCTTGTCTTCATGTATTGACATGAAATAGATCAG-AGATAGCA
* * * * ** ***
14241777 GATCATGTCTTCATGTATTGGCTTGGTGTAGATCGAAGAATGGCAGATCTTGTCTTCATGTATTG
65 GATCTTATCTTCATGTATTGACATGAAGTAGATCGAA-AATGATGGATCTTGTCTTCATGTATTG
* * * * **
14241842 ACACGAAGTAGATCGAAGATAGCAAATCTTGTCTTCCCATAT-TGGTGGTGAAGTAGATCGAAGA
129 ACATGAAGTAGATCGAAGATAGCAGATCTTGTCTT--CATGTATAGACGTGAAGTAGATCGAAGA
* **
14241906 TAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGT
192 TAATAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCACAT
* * * * * * * *** *
14241971 ATTGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTT--TCCATACTGGTGGT
257 AATGGCGTGAAGTAGATCGAAGAAAACAGATCCTATCTTCAT-C-TACTGACAGC
* * ** *
14242024 GAAGAAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAG
1 GAAGTAGATCAAAGATAACAGATCTTGTCTTCATGTATTGACATGAAATAGATCAGAGATAGCAG
* * *
14242089 ATCTTGTCTTCCTGTA-TCAGCAGTGAAGTAGATC
66 ATCTTATCTTCATGTATTGA-CA-TGAAGTAGATC
14242123 AAAGATACAA
Statistics
Matches: 606, Mismatches: 92, Indels: 38
0.82 0.12 0.05
Matches are distributed among these distances:
307 1 0.00
308 41 0.07
309 301 0.50
310 61 0.10
311 186 0.31
312 16 0.03
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32
Consensus pattern (309 bp):
GAAGTAGATCAAAGATAACAGATCTTGTCTTCATGTATTGACATGAAATAGATCAGAGATAGCAG
ATCTTATCTTCATGTATTGACATGAAGTAGATCGAAAATGATGGATCTTGTCTTCATGTATTGAC
ATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATAGACGTGAAGTAGATCGAAGATAAT
AGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCACATAATG
GCGTGAAGTAGATCGAAGAAAACAGATCCTATCTTCATCTACTGACAGC
Done.