Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 52 of 168
Found at i:14554442 original size:29 final size:28
Alignment explanation
Indices: 14554405--14554470 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 28
14554395 TAGATAATGA
14554405 AAAAGGATAGCTTCGGCTATCTAATGTG
1 AAAAGGATAGCTTCGGCTATCTAATGTG
14554433 AAAAGCGATAGCTTCGGCTATCTAATGTG
1 AAAAG-GATAGCTTCGGCTATCTAATGTG
14554462 AAAACGGAT
1 AAAA-GGAT
14554471 GGTGACGACC
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
28 5 0.14
29 30 0.83
30 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (28 bp):
AAAAGGATAGCTTCGGCTATCTAATGTG
Found at i:14555223 original size:22 final size:22
Alignment explanation
Indices: 14555195--14555239 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
14555185 GACTTTAGTA
14555195 TGAGATGACAGAGAATCAGTGC
1 TGAGATGACAGAGAATCAGTGC
14555217 TGAGATGACAGAGAATCAGTGC
1 TGAGATGACAGAGAATCAGTGC
14555239 T
1 T
14555240 AAAAAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.13, G:0.31, T:0.20
Consensus pattern (22 bp):
TGAGATGACAGAGAATCAGTGC
Found at i:14555384 original size:50 final size:50
Alignment explanation
Indices: 14555300--14555575 Score: 392
Period size: 50 Copynumber: 5.5 Consensus size: 50
14555290 ATTTGGGTAA
* * * * *
14555300 AGAGATCCAATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGACG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
*
14555350 AGAGGTCTCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
* *
14555400 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
14555450 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
* * * *
14555500 AGAGATCCC-TCGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCAT-GTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
* ** *
14555550 GGAGGTCCCCCGTTAGACCATGTTTG
1 AGAGGTCCCATGTAAGACCATGTTTG
14555576 TAACATCCCG
Statistics
Matches: 205, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
49 1 0.00
50 204 1.00
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
Found at i:14556395 original size:50 final size:50
Alignment explanation
Indices: 14556313--14556603 Score: 282
Period size: 50 Copynumber: 5.8 Consensus size: 50
14556303 TTTTGGGTAA
* * *
14556313 AGAGATCCCATGTAAGATCATGTCTGGTACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
14556363 AGAGGTCCCATGTTAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * *
14556413 AGAGGTCTCATTTAAGACCATGTCTAGGACATGGCGTTGCCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* ** * *
14556463 ATAGGTCCCCCGTAAGACCATGTCTGGGACATGGC-ATGGACACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGG-CACCGAGATG
** * ** * * * * *
14556513 AGAACTCCCATGTAAGTCCACATCTAGGATATGGCATTGGCA--GTAAAGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGATG
* ** * * *
14556562 AAACATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
14556604 TGTTATTATC
Statistics
Matches: 196, Mismatches: 42, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
48 1 0.01
49 36 0.18
50 156 0.80
51 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:14562303 original size:50 final size:49
Alignment explanation
Indices: 14562226--14562459 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 49
14562216 TAAAGAGATC
*
14562226 CCATGTAAGATCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
* *
14562275 CTTATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGGT
1 C-CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
* *
14562325 CCCATGAAAGAACATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
1 -CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
** * * * * **
14562375 CCCCGTAAGACCATGTCTGGGACATGACATGGGCACCGATATGAGAACT
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
* * * * *
14562424 CCCATGTAAGACAATATCTAGGATATGGCATTGGCA
1 -CCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
14562460 GTAAAGGAAA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 40 0.25
50 116 0.74
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (49 bp):
CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
Found at i:14562452 original size:99 final size:100
Alignment explanation
Indices: 14562224--14562459 Score: 298
Period size: 99 Copynumber: 2.4 Consensus size: 100
14562214 GGTAAAGAGA
* *
14562224 TCCCATGTAAGATC-ATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTTATGTAAGACC
1 TCCCATGTAAGA-CAATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCACGTAAGACC
* * * * **
14562288 ATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGG
65 ATGTCTGGGACATGACATGGGCACCGAGATGAGAAC
* *
14562324 TCCCATGAAAGA-ACATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTC-CCCGTAAGACC
1 TCCCATGTAAGACA-ATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCACGTAAGACC
*
14562387 ATGTCTGGGACATGACATGGGCACCGATATGAGAAC
65 ATGTCTGGGACATGACATGGGCACCGAGATGAGAAC
* * * *
14562423 TCCCATGTAAGACAATATCTAGGATATGGCATTGGCA
1 TCCCATGTAAGACAATGTCTGGGACATGGCGTTGGCA
14562460 GTAAAGGAAA
Statistics
Matches: 117, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
99 67 0.57
100 50 0.43
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (100 bp):
TCCCATGTAAGACAATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCACGTAAGACCA
TGTCTGGGACATGACATGGGCACCGAGATGAGAAC
Found at i:14565157 original size:791 final size:792
Alignment explanation
Indices: 14563634--14565220 Score: 2926
Period size: 791 Copynumber: 2.0 Consensus size: 792
14563624 CTTACCATGT
14563634 GATGATATTATTAACTTATGTGTTTAATCACTAGCTTGTGATTATGATAAATGTTCAATATGAAC
1 GATGATATTATTAACTTATGTGTTTAATCACTAGCTTGTGATTATGATAAATGTTCAATATGAAC
*
14563699 CAAGACATGTGTGTATGAAATTTATTAAAACGGTGTTACTTAGAAAACATGATATGTTATGAAGA
66 CAAGACATGTGTGTATGAAATTTATTAAAACGGTGTTACATAGAAAACATGATATGTTATGAAGA
*
14563764 ATGATAAATCCAATTGAATCATGTTTAAGTATAGTAGTTATCTATGTCAAATTCATATGAATTAT
131 ATGATAAATCCAATTGAATCATGTTTAAGTATAGTAGTTATCGATGTCAAATTCATATGAA-TAT
* *
14563829 TTTTAAATGAACTAAGATGTGTTATTGATATGCTTAGGCTTGTGCTAAGCTATAAGTTGGATTGT
195 TCTTAAATGAACTAACATGTGTTATTGATATGCTTAGGCTTGTGCTAAGCTATAAGTTGGATTGT
14563894 ATTATGTTAGTTTTAAAGAAATGCATCGAAATGGTAATTAACCAAATGGAAAGATGTTTAGGGCA
260 ATTATGTTAGTTTTAAAGAAATGCATCGAAATGGTAATTAACCAAATGGAAAGATGTTTAGGGCA
14563959 TGAAAGGGTGGTAAGAATCAAAGTATTCAATTTCTTATGAAATGATTTATTGTATAGTTTATTTT
325 TGAAAGGGTGGTAAGAATCAAAGTATTCAATTTCTTATGAAATGATTTATTGTATAGTTTATTTT
14564024 AAAAGAGTCATACTTAAATGCACTAGGTTGTGGTTATAATTGATGTTTATGCTCATGTTTTGTGT
390 AAAAGAGTCATACTTAAATGCACTAGGTTGTGGTTATAATTGATGTTTATGCTCATGTTTTGTGT
14564089 GTTATACAAATGAAACGATTGAGAATGGGTAAATGAAATGGTAAGTAAGTGAATGAAATGGATTA
455 GTTATACAAATGAAACGATTGAGAATGGGTAAATGAAATGGTAAGTAAGTGAATGAAATGGATTA
*
14564154 CCGTTTTAAGAAAAGGGAGATGATTATGCAATTCAATGTATGAGACATTATTCTGTTATACATGG
520 CCGTTTTAAGAAAAGGGAGATGATTATGCAATTCAATGTATGAGACATTATTATGTTATACATGG
*
14564219 AAAGTGTTCGGGTTGGTAATGAAGCTATTCATTTTTGAGATGATATTTATATAGATTGGTAAATA
585 AAAGTGTTCGGGTTGGTAATGAAGCTATTCATTTGTGAGATGATATTTATATAGATTGGTAAATA
14564284 TTGAAGCATTGATATAGGTTTATTCATGACATATAAAGTTCATATTTGAAATGAAATGTTATGTT
650 TTGAAGCATTGATATAGGTTTATTCATGACATATAAAGTTCATATTTGAAATGAAATGTTATGTT
*
14564349 TAAAGTTTATGCGAGCTTACTAAGCATTCATTGCTTGCGTGGTTGTCATTTTCTTATTTTACAGA
715 TAAAGTTTATGCGAGCTTACTAAGCATTCATTGCTTGCGTGGTTGTCATTTTCTTACTTTACAGA
*
14564414 TTATCGAAAGCTC
780 TTATCAAAAGCTC
* *
14564427 GATGATATTATTAAGTTATGTGTTTAATCACTAGCTTGTGATTATGGTAAATGTTCAATATGAAC
1 GATGATATTATTAACTTATGTGTTTAATCACTAGCTTGTGATTATGATAAATGTTCAATATGAAC
* *
14564492 CATGACATGTGTGTATGAAATTTATTAAAATGGTGTTACATAGAAAACATGATATGTTATGAAGA
66 CAAGACATGTGTGTATGAAATTTATTAAAACGGTGTTACATAGAAAACATGATATGTTATGAAGA
*
14564557 ATGATAAATCTAATTGAATCATGTTTAAGTATAGTAGTTATCGATGTCAAATT-ATTATGAA-AT
131 ATGATAAATCCAATTGAATCATGTTTAAGTATAGTAGTTATCGATGTCAAATTCA-TATGAATAT
* * *
14564620 TCTTAAATGAACTAACATGTGTTGTTGATGTGCTTAGGCTTGTGCTAAGCTATAGGTTGGATTGT
195 TCTTAAATGAACTAACATGTGTTATTGATATGCTTAGGCTTGTGCTAAGCTATAAGTTGGATTGT
* * *
14564685 GTTATGTTAGTTTTAAAGAAATGCATCGAATTGGTAATTGACCAAATGGAAAGATGTTTAGGGCA
260 ATTATGTTAGTTTTAAAGAAATGCATCGAAATGGTAATTAACCAAATGGAAAGATGTTTAGGGCA
* *
14564750 TGAAATGGTGGTAAGAATCAAAGTATTCAATTTCTTATGAAATGATTTATTGTATATTTTATTTT
325 TGAAAGGGTGGTAAGAATCAAAGTATTCAATTTCTTATGAAATGATTTATTGTATAGTTTATTTT
*
14564815 AAAAGAGTCATACTTAAATGCACTAGTTTGTGGTTATAATTGATGTTTATGCTCATGTTTTGTGT
390 AAAAGAGTCATACTTAAATGCACTAGGTTGTGGTTATAATTGATGTTTATGCTCATGTTTTGTGT
14564880 GTTATACAAATGAAACGATTGAGAATGGGTAAATGAAATGGTAAGTAAGTGAATGAAATGGATTA
455 GTTATACAAATGAAACGATTGAGAATGGGTAAATGAAATGGTAAGTAAGTGAATGAAATGGATTA
14564945 CCGTTTTAAGAAAAGGGAGATGATTATGCAATTCAATGTATGAGACATTATTATGTTATACATGG
520 CCGTTTTAAGAAAAGGGAGATGATTATGCAATTCAATGTATGAGACATTATTATGTTATACATGG
*
14565010 AAAGTGTTCGGGTTGGTAATGAAGCTATTCATTTGTGAGATGATATTTATATAGATTGGTAAATC
585 AAAGTGTTCGGGTTGGTAATGAAGCTATTCATTTGTGAGATGATATTTATATAGATTGGTAAATA
*
14565075 TTGAAGCATTGATATAGGTTTATTCATGACATATAAAGTTCATATTTGAAATGGAATGTTATGTT
650 TTGAAGCATTGATATAGGTTTATTCATGACATATAAAGTTCATATTTGAAATGAAATGTTATGTT
14565140 TAAAGTTTATGCGAGCTTACTAAGCATTCATTGCTTGCGTGGTTGTCATTTTCTTACTTTACAGA
715 TAAAGTTTATGCGAGCTTACTAAGCATTCATTGCTTGCGTGGTTGTCATTTTCTTACTTTACAGA
14565205 TTATCAAAAGCTC
780 TTATCAAAAGCTC
14565218 GAT
1 GAT
14565221 CGGGTTGTAA
Statistics
Matches: 769, Mismatches: 24, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
791 586 0.76
792 1 0.00
793 182 0.24
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (792 bp):
GATGATATTATTAACTTATGTGTTTAATCACTAGCTTGTGATTATGATAAATGTTCAATATGAAC
CAAGACATGTGTGTATGAAATTTATTAAAACGGTGTTACATAGAAAACATGATATGTTATGAAGA
ATGATAAATCCAATTGAATCATGTTTAAGTATAGTAGTTATCGATGTCAAATTCATATGAATATT
CTTAAATGAACTAACATGTGTTATTGATATGCTTAGGCTTGTGCTAAGCTATAAGTTGGATTGTA
TTATGTTAGTTTTAAAGAAATGCATCGAAATGGTAATTAACCAAATGGAAAGATGTTTAGGGCAT
GAAAGGGTGGTAAGAATCAAAGTATTCAATTTCTTATGAAATGATTTATTGTATAGTTTATTTTA
AAAGAGTCATACTTAAATGCACTAGGTTGTGGTTATAATTGATGTTTATGCTCATGTTTTGTGTG
TTATACAAATGAAACGATTGAGAATGGGTAAATGAAATGGTAAGTAAGTGAATGAAATGGATTAC
CGTTTTAAGAAAAGGGAGATGATTATGCAATTCAATGTATGAGACATTATTATGTTATACATGGA
AAGTGTTCGGGTTGGTAATGAAGCTATTCATTTGTGAGATGATATTTATATAGATTGGTAAATAT
TGAAGCATTGATATAGGTTTATTCATGACATATAAAGTTCATATTTGAAATGAAATGTTATGTTT
AAAGTTTATGCGAGCTTACTAAGCATTCATTGCTTGCGTGGTTGTCATTTTCTTACTTTACAGAT
TATCAAAAGCTC
Found at i:14566648 original size:50 final size:50
Alignment explanation
Indices: 14566523--14566771 Score: 300
Period size: 50 Copynumber: 4.8 Consensus size: 50
14566513 ATTTGGGTGA
* *
14566523 AGAGATCCCATGTAAGACCCTGTCTGGGACATGGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATG
* * * *
14566579 AGAGGTTCCATCTAAGACCATGTCTGGGACGTGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
14566629 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
14566679 AGATGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
14566729 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
14566772 TGTTATGATC
Statistics
Matches: 171, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
50 95 0.56
51 35 0.20
53 3 0.02
55 2 0.01
56 36 0.21
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:14583439 original size:22 final size:23
Alignment explanation
Indices: 14583414--14583470 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
14583404 TGTGAAGCAT
*
14583414 TTGTGGCGTATTATGTGATGC-C
1 TTGTGGTGTATTATGTGATGCTC
* * *
14583436 TTGTGATGTATTTTGTGATGCTT
1 TTGTGGTGTATTATGTGATGCTC
14583459 TTGTGGTGTATT
1 TTGTGGTGTATT
14583471 TTATAACACC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 18 0.62
23 11 0.38
ACGTcount: A:0.12, C:0.07, G:0.30, T:0.51
Consensus pattern (23 bp):
TTGTGGTGTATTATGTGATGCTC
Found at i:14583468 original size:23 final size:22
Alignment explanation
Indices: 14583402--14583472 Score: 79
Period size: 23 Copynumber: 3.1 Consensus size: 22
14583392 AGGAAAGTTA
* *
14583402 TTTGTGAAGCATTTGTGGCGTAT
1 TTTGTGATGC-TTTGTGGTGTAT
* * *
14583425 TATGTGATGCCTTGTGATGTAT
1 TTTGTGATGCTTTGTGGTGTAT
14583447 TTTGTGATGCTTTTGTGGTGTAT
1 TTTGTGATGC-TTTGTGGTGTAT
14583470 TTT
1 TTT
14583473 ATAACACCCT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 18 0.46
23 21 0.54
ACGTcount: A:0.14, C:0.07, G:0.28, T:0.51
Consensus pattern (22 bp):
TTTGTGATGCTTTGTGGTGTAT
Found at i:14585371 original size:67 final size:67
Alignment explanation
Indices: 14585263--14585431 Score: 239
Period size: 67 Copynumber: 2.5 Consensus size: 67
14585253 TTTATGCTAT
* *
14585263 CATAGTCGAGCTATGGTCTTACACATCATGCCCCATGTTTAATGTCATGGCAGACTCTCTATGTT
1 CATAGTCGAGCTATGGTCTTACACATTATACCCCATGTTTAATGTCATGGCAGACTCTCTATGTT
14585328 GC
66 GC
* * * *
14585330 CATAGTCGAGCTACGGTCTTACACATTATTCCCCATGTTTAATGTCTTGGCGGACTCTCTATGTT
1 CATAGTCGAGCTATGGTCTTACACATTATACCCCATGTTTAATGTCATGGCAGACTCTCTATGTT
*
14585395 GT
66 GC
* * * *
14585397 CGTATTTGAGCTATGGTCTTACAAATTATACCCCA
1 CATAGTCGAGCTATGGTCTTACACATTATACCCCA
14585432 CCAGACTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
67 90 1.00
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (67 bp):
CATAGTCGAGCTATGGTCTTACACATTATACCCCATGTTTAATGTCATGGCAGACTCTCTATGTT
GC
Found at i:14585528 original size:120 final size:120
Alignment explanation
Indices: 14585313--14585551 Score: 361
Period size: 120 Copynumber: 2.0 Consensus size: 120
14585303 AATGTCATGG
* *
14585313 CAGACTCTCTATGTTGCCATAGTCGAGCTACGGTCTTACACATTATTCCCCATGTTTAATGTCTT
1 CAGACTCTCTATATTGCCATAGTCGAGCTACGGTCTTACACATTATTCCCCATGTTTAATGTCCT
* * * * *
14585378 GGCGGACTCTCTATGTTGTCGTATTTGAGCTATGGTCTTACAAATTATACCCCAC
66 AGCGGACTCTCTATGTTGCCATAGTCGAGCTATGGTCTTACAAATTATACCCCAC
* * **
14585433 CAGACTCTTTATATTTCCATAGTCGAGCTGTGGTCTTACACATTATTCCCCATGTTTAATGTCCT
1 CAGACTCTCTATATTGCCATAGTCGAGCTACGGTCTTACACATTATTCCCCATGTTTAATGTCCT
* *
14585498 AGCGGACTCTCTATGTTGCCATAGTCGAGCTATGGTCTTACACATTATTCCCCA
66 AGCGGACTCTCTATGTTGCCATAGTCGAGCTATGGTCTTACAAATTATACCCCA
14585552 TTACAGCCCA
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 106 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.36
Consensus pattern (120 bp):
CAGACTCTCTATATTGCCATAGTCGAGCTACGGTCTTACACATTATTCCCCATGTTTAATGTCCT
AGCGGACTCTCTATGTTGCCATAGTCGAGCTATGGTCTTACAAATTATACCCCAC
Found at i:14587213 original size:18 final size:18
Alignment explanation
Indices: 14587190--14587224 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14587180 GGCTAAGGTT
14587190 AAAAGAACGGGAAGGAAG
1 AAAAGAACGGGAAGGAAG
* *
14587208 AAAAGAAGGGGGAGGAA
1 AAAAGAACGGGAAGGAA
14587225 AGGAGAATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.03, G:0.43, T:0.00
Consensus pattern (18 bp):
AAAAGAACGGGAAGGAAG
Found at i:14590284 original size:54 final size:54
Alignment explanation
Indices: 14590225--14590569 Score: 308
Period size: 54 Copynumber: 6.4 Consensus size: 54
14590215 TGCGTTTCGT
* *
14590225 GGGTAAAATGACCGAAATACCCTCGAAAGGTTAAATGACCAAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAAAGGTAAAATGACCGAAATACCCTCGAA
* * * * *
14590279 GGGTAAAATAACCAAAATACCCTC-AAAGAGTAAAATAATCGAAAT-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCTCGAAAG-GTAAAATGACCGAAATACCCTCGAA
* * ** *
14590332 GGGTAAAATGACCAAAATACCCTCGAAGGGTAAAATGAATGAAATATCCC-CGAT
1 GGGTAAAATGACCGAAATACCCTCGAAAGGTAAAATGACCGAAATA-CCCTCGAA
* * * *
14590386 GGGTAAAATGACCGAAATACCCTCG-AAGAGTAAAATGACTGAAATTCCC-CCAGT
1 GGGTAAAATGACCGAAATACCCTCGAAAG-GTAAAATGACCGAAATACCCTCGA-A
** * * *
14590440 GGGTAAAATGATTGAAATAACCTC-AAAGGGTAAAATGACCGCAATA-CCTCCGAT
1 GGGTAAAATGACCGAAATACCCTCGAAA-GGTAAAATGACCGAAATACCCT-CGAA
* * * * ** * **
14590494 GGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATAACTAAAATATCCTAAAA
1 GGGTAAAATGACCGAAATACCCTCGAAAGGTAAAATGACCGAAATACCCTCGAA
*
14590548 GGGTAATATGACCGAAATACCC
1 GGGTAAAATGACCGAAATACCC
14590570 CCATAGAGTA
Statistics
Matches: 238, Mismatches: 41, Indels: 24
0.79 0.14 0.08
Matches are distributed among these distances:
53 56 0.24
54 171 0.72
55 11 0.05
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (54 bp):
GGGTAAAATGACCGAAATACCCTCGAAAGGTAAAATGACCGAAATACCCTCGAA
Found at i:14590447 original size:81 final size:80
Alignment explanation
Indices: 14590225--14590585 Score: 349
Period size: 81 Copynumber: 4.5 Consensus size: 80
14590215 TGCGTTTCGT
* *
14590225 GGGTAAAATGACCGAAATACCCTCGAA-AGGTTAAATGACCAAAATACCCTCGAAGGGTAAAATA
1 GGGTAAAATGACCGAAATACCCTCGAAGA-GTAAAATGACCAAAATACCCCCGAAGGGTAAAATA
**
14590289 ACCAAA-ATACCCTCAAA
65 ATGAAATAT-CCC-CAAA
* * * * * *
14590306 GAGTAAAATAATCGAAAT-CCCTCAAAGGGTAAAATGACCAAAATACCCTCGAAGGGTAAAATGA
1 GGGTAAAATGACCGAAATACCCTCGAAGAGTAAAATGACCAAAATACCCCCGAAGGGTAAAAT-A
* *
14590370 ATGAAATATCCCCGAT
65 ATGAAATATCCCCAAA
** * *
14590386 GGGTAAAATGACCGAAATACCCTCGAAGAGTAAAATGACTGAAATTCCCCC-AGTGGGTAAAATG
1 GGGTAAAATGACCGAAATACCCTCGAAGAGTAAAATGACCAAAATACCCCCGA-AGGGTAAAAT-
* * *
14590450 ATTGAAATAACCTCAAA
64 AATGAAATATCCCCAAA
* * *
14590467 GGGTAAAATGACCGCAATA-CCTCCGATGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATA
1 GGGTAAAATGACCGAAATACCCT-CGAAGAGTAAAATGACCAAAATACCCCCGAAGGGTAAAATA
* **
14590531 ACTAAAATATCCTAAAA
65 A-TGAAATATCCCCAAA
* *
14590548 GGGTAATATGACCGAAATACCC-CCATAGAGT-AAATGAC
1 GGGTAAAATGACCGAAATACCCTCGA-AGAGTAAAATGAC
14590586 TATTATACCC
Statistics
Matches: 229, Mismatches: 41, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
80 71 0.31
81 153 0.67
82 5 0.02
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (80 bp):
GGGTAAAATGACCGAAATACCCTCGAAGAGTAAAATGACCAAAATACCCCCGAAGGGTAAAATAA
TGAAATATCCCCAAA
Found at i:14590580 original size:27 final size:27
Alignment explanation
Indices: 14590225--14590585 Score: 278
Period size: 27 Copynumber: 13.4 Consensus size: 27
14590215 TGCGTTTCGT
*
14590225 GGGTAAAATGACCGAAATACCCTCGAAA
1 GGGTAAAATGACCGAAATACCC-CCAAA
* * * *
14590253 -GGTTAAATGACCAAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * *
14590279 GGGTAAAATAACCAAAATACCCTCAAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * * *
14590306 GAGTAAAATAATCGAAAT-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * *
14590332 GGGTAAAATGACCAAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCCCAAA
** * * *
14590359 GGGTAAAATGAATGAAATATCCCCGAT
1 GGGTAAAATGACCGAAATACCCCCAAA
* *
14590386 GGGTAAAATGACCGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * * **
14590413 GAGTAAAATGACTGAAATTCCCCCAGT
1 GGGTAAAATGACCGAAATACCCCCAAA
** * *
14590440 GGGTAAAATGATTGAAATAACCTCAAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * * *
14590467 GGGTAAAATGACCGCAATACCTCCGAT
1 GGGTAAAATGACCGAAATACCCCCAAA
* *
14590494 GGGTAAAATGACCAAAATACCCCCGAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* ** * **
14590521 GGGTAAAATAACTAAAATATCCTAAAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* *
14590548 GGGTAATATGACCGAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCCAAA
*
14590575 GAGT-AAATGAC
1 GGGTAAAATGAC
14590586 TATTATACCC
Statistics
Matches: 262, Mismatches: 69, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
26 30 0.11
27 232 0.89
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCCAAA
Found at i:14590953 original size:27 final size:29
Alignment explanation
Indices: 14590914--14590971 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 29
14590904 ACTGCATTGT
*
14590914 ACTGATTACTGTATTGGACTAA-GCCCAC
1 ACTGATTACTGTAATGGACTAAGGCCCAC
*
14590942 ACTG-TTACTGTAATGGGCTAAGGCCCAC
1 ACTGATTACTGTAATGGACTAAGGCCCAC
14590970 AC
1 AC
14590972 CATACCGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 15 0.56
28 12 0.44
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (29 bp):
ACTGATTACTGTAATGGACTAAGGCCCAC
Found at i:14597761 original size:27 final size:27
Alignment explanation
Indices: 14597723--14597971 Score: 290
Period size: 27 Copynumber: 9.3 Consensus size: 27
14597713 TACGATTCGT
*
14597723 GGGTAAAATGACCGAAATACCGTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*
14597750 GGGTAAAATGACCGAAATACCGTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* *
14597777 GGGTAAAATGATCGAAATA-CCTTGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*
14597803 GGGTAAAATGACCGAAATACCC-CTGAT
1 GGGTAAAATGACCGAAATACCCTC-GAA
* *
14597830 GGGTAAAATGACTGAAATACCCTCAAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* * * *
14597857 AGGTAAAATGAACAAAATGCCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* *
14597884 GGGTAAAATGACCGAAATACCCCCGAT
1 GGGTAAAATGACCGAAATACCCTCGAA
* * *
14597911 GGTTAAAATGACCAAAATA-CGTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* *
14597937 GGGTAAAATAACCGAAATACCC-CCATA
1 GGGTAAAATGACCGAAATACCCTCGA-A
14597964 GGGTAAAA
1 GGGTAAAA
14597972 GACTGTTATA
Statistics
Matches: 186, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
26 45 0.24
27 140 0.75
28 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.17
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCTCGAA
Found at i:14597941 original size:107 final size:107
Alignment explanation
Indices: 14597723--14597958 Score: 294
Period size: 107 Copynumber: 2.2 Consensus size: 107
14597713 TACGATTCGT
* * * * * *
14597723 GGGTAAAATGACCGAAATACCGTCGAAGGGTAAAATGACCGAAATACCGTCGAAGGGTAAAATGA
1 GGGTAAAATGACCGAAATACCCTCAAAAGGTAAAATGAACAAAATACCCTCGAAGGGTAAAATGA
* ** * *
14597788 TCGAAATACCTTGAAGGGTAAAATGACCGAAATACCCCTGAT
66 CCGAAATACCCCGAAGGGTAAAATGACCAAAATACCCCTGAA
* *
14597830 GGGTAAAATGACTGAAATACCCTCAAAAGGTAAAATGAACAAAATGCCCTCGAAGGGTAAAATGA
1 GGGTAAAATGACCGAAATACCCTCAAAAGGTAAAATGAACAAAATACCCTCGAAGGGTAAAATGA
* * **
14597895 CCGAAATACCCCCGATGGTTAAAATGACCAAAATACGTC-GAA
66 CCGAAATA-CCCCGAAGGGTAAAATGACCAAAATACCCCTGAA
*
14597937 GGGTAAAATAACCGAAATACCC
1 GGGTAAAATGACCGAAATACCC
14597959 CCATAGGGTA
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
107 86 0.79
108 23 0.21
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.17
Consensus pattern (107 bp):
GGGTAAAATGACCGAAATACCCTCAAAAGGTAAAATGAACAAAATACCCTCGAAGGGTAAAATGA
CCGAAATACCCCGAAGGGTAAAATGACCAAAATACCCCTGAA
Found at i:14600878 original size:21 final size:21
Alignment explanation
Indices: 14600854--14600895 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
14600844 TTAATTCAAT
14600854 TTATTAATTTAGATAGTAAAA
1 TTATTAATTTAGATAGTAAAA
14600875 TTATTAATTTAGATAGTAAAA
1 TTATTAATTTAGATAGTAAAA
14600896 AAATTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (21 bp):
TTATTAATTTAGATAGTAAAA
Found at i:14600907 original size:22 final size:21
Alignment explanation
Indices: 14600856--14600905 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
14600846 AATTCAATTT
**
14600856 ATTAATTTAGATAGTAAAATT
1 ATTAATTTAGATAGTAAAAAA
14600877 ATTAATTTAGATAGTAAAAAA
1 ATTAATTTAGATAGTAAAAAA
*
14600898 ATTTATTT
1 ATTAATTT
14600906 TAAGCAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (21 bp):
ATTAATTTAGATAGTAAAAAA
Found at i:14602235 original size:21 final size:21
Alignment explanation
Indices: 14602206--14602245 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14602196 CAATCGATTT
*
14602206 AAATTAGTTACAATCAATTCA
1 AAATCAGTTACAATCAATTCA
14602227 AAATCAGTTACAATCAATT
1 AAATCAGTTACAATCAATT
14602246 TAAGTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (21 bp):
AAATCAGTTACAATCAATTCA
Found at i:14602278 original size:20 final size:21
Alignment explanation
Indices: 14602194--14602273 Score: 76
Period size: 20 Copynumber: 3.9 Consensus size: 21
14602184 TCAAATGTGC
*
14602194 TACAATCGATTTAAAT-TAGT
1 TACAATCAATTTAAATCTAGT
*
14602214 TACAATCAATTCAAAATC-AGT
1 TACAATCAATT-TAAATCTAGT
* *
14602235 TACAATCAATTTAAGTTTA-T
1 TACAATCAATTTAAATCTAGT
* *
14602255 TTCAATCGATTTAAATCTA
1 TACAATCAATTTAAATCTA
14602274 TTTCATATTT
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
20 29 0.60
21 19 0.40
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (21 bp):
TACAATCAATTTAAATCTAGT
Found at i:14605846 original size:13 final size:13
Alignment explanation
Indices: 14605825--14605855 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
14605815 GCTTAGATCA
*
14605825 TCATCAAATAAAT
1 TCATAAAATAAAT
14605838 TCATAAAATAAAT
1 TCATAAAATAAAT
14605851 TCATA
1 TCATA
14605856 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:14619999 original size:74 final size:69
Alignment explanation
Indices: 14619870--14620036 Score: 160
Period size: 74 Copynumber: 2.3 Consensus size: 69
14619860 GTGGTGGATG
** * * * *
14619870 AATATAACTTTTTGTATGCCATAG-AGGGTTGTCACTTTTTGCATGTCTTAATGGGT-TGGGTCC
1 AATATAACTTTTTGTATGTAATTGCA-AGTTGTCACTTTTTGCATATCGTAATGGGTGT-GGT--
14619933 AGTGGTGAACT
62 --T-GTGAACT
* *
14619944 AATATCACTTTTTGTATGTAATTGCAAGTTGTCACTTTTTGTATAT-GTAATTGGGTGTGGTTGT
1 AATATAACTTTTTGTATGTAATTGCAAGTTGTCACTTTTTGCATATCGTAA-TGGGTGTGGTTGT
*
14620008 GAAGT
65 GAACT
14620013 AATATAACTTTTTGTATGTAATTG
1 AATATAACTTTTTGTATGTAATTG
14620037 TAGGTTGATA
Statistics
Matches: 80, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
69 29 0.36
70 1 0.01
73 3 0.04
74 45 0.56
75 2 0.03
ACGTcount: A:0.24, C:0.10, G:0.23, T:0.44
Consensus pattern (69 bp):
AATATAACTTTTTGTATGTAATTGCAAGTTGTCACTTTTTGCATATCGTAATGGGTGTGGTTGTG
AACT
Found at i:14626956 original size:2 final size:2
Alignment explanation
Indices: 14626949--14627000 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
14626939 GCGTACATTC
14626949 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14626991 TA TA TA TA TA
1 TA TA TA TA TA
14627001 AATCCTTGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14631483 original size:25 final size:26
Alignment explanation
Indices: 14631423--14631492 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 26
14631413 AACTCGAGAA
*
14631423 TTCTCTAGAAAGCCTTTGTGGTGAAC
1 TTCTCTAGAAAACCTTTGTGGTGAAC
* * *
14631449 TT-TTTGGAAAACCATTGTGGTG-AC
1 TTCTCTAGAAAACCTTTGTGGTGAAC
14631473 TTCTCTAGAAAACCTTTGTG
1 TTCTCTAGAAAACCTTTGTG
14631493 AGGAATTATC
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
24 4 0.11
25 30 0.83
26 2 0.06
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.37
Consensus pattern (26 bp):
TTCTCTAGAAAACCTTTGTGGTGAAC
Found at i:14645659 original size:27 final size:27
Alignment explanation
Indices: 14645629--14645680 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
14645619 TCAACATGTA
14645629 ACCATGTACTCAATTTGGCCAAATAAT
1 ACCATGTACTCAATTTGGCCAAATAAT
14645656 ACCATGTACTCAATTTGGCCAAATA
1 ACCATGTACTCAATTTGGCCAAATA
14645681 CTAATCACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.29
Consensus pattern (27 bp):
ACCATGTACTCAATTTGGCCAAATAAT
Found at i:14646373 original size:39 final size:39
Alignment explanation
Indices: 14646330--14646502 Score: 186
Period size: 39 Copynumber: 4.4 Consensus size: 39
14646320 CATGGCATGA
* * *
14646330 AAGTGCTATCAAGAGTACCAAAGTACAATAGGGGCACGT
1 AAGTGCTATCAGGGGTACCAAAGTACAACAGGGGCACGT
* * * *
14646369 AAGTGCTATCAGGGGTACCAAAGTACAACATGAGAATGT
1 AAGTGCTATCAGGGGTACCAAAGTACAACAGGGGCACGT
* * * *
14646408 AAGTGCGATCAGGGGTACCGAAGTACGATAGGGGCACGT
1 AAGTGCTATCAGGGGTACCAAAGTACAACAGGGGCACGT
* ** *
14646447 AAGTG-TGATCAGGGGTACCGAAGTATGACAAGGGCACGT
1 AAGTGCT-ATCAGGGGTACCAAAGTACAACAGGGGCACGT
*
14646486 AAGTGCAATCAGGGGTA
1 AAGTGCTATCAGGGGTA
14646503 TAATTATACA
Statistics
Matches: 112, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.34, C:0.16, G:0.32, T:0.18
Consensus pattern (39 bp):
AAGTGCTATCAGGGGTACCAAAGTACAACAGGGGCACGT
Found at i:14646392 original size:20 final size:20
Alignment explanation
Indices: 14646329--14646392 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
14646319 CCATGGCATG
* *
14646329 AAAGTGCTATCAAGAGTACC
1 AAAGTGCTATCAGGGGTACC
* * * *
14646349 AAAGTACAAT-AGGGGCACG
1 AAAGTGCTATCAGGGGTACC
*
14646368 TAAGTGCTATCAGGGGTACC
1 AAAGTGCTATCAGGGGTACC
14646388 AAAGT
1 AAAGT
14646393 ACAACATGAG
Statistics
Matches: 31, Mismatches: 12, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
19 12 0.39
20 19 0.61
ACGTcount: A:0.38, C:0.17, G:0.27, T:0.19
Consensus pattern (20 bp):
AAAGTGCTATCAGGGGTACC
Found at i:14646436 original size:20 final size:20
Alignment explanation
Indices: 14646408--14646471 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
14646398 ATGAGAATGT
*
14646408 AAGTGCGATCAGGGGTACCG
1 AAGTACGATCAGGGGTACCG
*
14646428 AAGTACGAT-AGGGGCA-CG
1 AAGTACGATCAGGGGTACCG
**
14646446 TAAGTGTGATCAGGGGTACCG
1 -AAGTACGATCAGGGGTACCG
14646467 AAGTA
1 AAGTA
14646472 TGACAAGGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 2 0.06
19 13 0.37
20 18 0.51
21 2 0.06
ACGTcount: A:0.30, C:0.16, G:0.38, T:0.17
Consensus pattern (20 bp):
AAGTACGATCAGGGGTACCG
Found at i:14646450 original size:19 final size:21
Alignment explanation
Indices: 14646406--14646500 Score: 67
Period size: 20 Copynumber: 4.8 Consensus size: 21
14646396 ACATGAGAAT
* *
14646406 GTAAGTGCGATCAGGGGTACC
1 GTAAGTACGATCAGGGGCACC
14646427 G-AAGTACGAT-AGGGGCA-C
1 GTAAGTACGATCAGGGGCACC
** *
14646445 GTAAGTGTGATCAGGGGTACC
1 GTAAGTACGATCAGGGGCACC
* *
14646466 G-AAGTATGA-CAAGGGCA-C
1 GTAAGTACGATCAGGGGCACC
* *
14646484 GTAAGTGCAATCAGGGG
1 GTAAGTACGATCAGGGG
14646501 TATAATTATA
Statistics
Matches: 57, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
18 4 0.07
19 24 0.42
20 26 0.46
21 3 0.05
ACGTcount: A:0.29, C:0.16, G:0.38, T:0.17
Consensus pattern (21 bp):
GTAAGTACGATCAGGGGCACC
Found at i:14646480 original size:20 final size:19
Alignment explanation
Indices: 14646417--14646476 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
14646407 TAAGTGCGAT
*
14646417 CAGGGGTACCGAAGTACGA
1 CAGGGGTACCGAAGTATGA
* * *
14646436 TAGGGGCA-CGTAAGTGTGA
1 CAGGGGTACCG-AAGTATGA
14646455 TCAGGGGTACCGAAGTATGA
1 -CAGGGGTACCGAAGTATGA
14646475 CA
1 CA
14646477 AGGGCACGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
18 2 0.06
19 14 0.45
20 13 0.42
21 2 0.06
ACGTcount: A:0.30, C:0.17, G:0.37, T:0.17
Consensus pattern (19 bp):
CAGGGGTACCGAAGTATGA
Found at i:14646488 original size:78 final size:78
Alignment explanation
Indices: 14646330--14646502 Score: 213
Period size: 78 Copynumber: 2.2 Consensus size: 78
14646320 CATGGCATGA
* * *
14646330 AAGTGCTATCAAGAGTACCAAAGTACAATAGGGGCACGTAAGTGCTATCAGGGGTACCAAAGTAC
1 AAGTGCAATCAGGGGTACCAAAGTACAATAGGGGCACGTAAGTGCTATCAGGGGTACCAAAGTAC
* *
14646395 AACATGAGAATGT
66 AACAAGAGAACGT
* * * *
14646408 AAGTGCGATCAGGGGTACCGAAGTACGATAGGGGCACGTAAGTG-TGATCAGGGGTACCGAAGTA
1 AAGTGCAATCAGGGGTACCAAAGTACAATAGGGGCACGTAAGTGCT-ATCAGGGGTACCAAAGTA
** * *
14646472 TGACAAGGGCACGT
65 CAACAAGAGAACGT
14646486 AAGTGCAATCAGGGGTA
1 AAGTGCAATCAGGGGTA
14646503 TAATTATACA
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
77 1 0.01
78 80 0.99
ACGTcount: A:0.34, C:0.16, G:0.32, T:0.18
Consensus pattern (78 bp):
AAGTGCAATCAGGGGTACCAAAGTACAATAGGGGCACGTAAGTGCTATCAGGGGTACCAAAGTAC
AACAAGAGAACGT
Found at i:14646794 original size:19 final size:19
Alignment explanation
Indices: 14646767--14646805 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
14646757 CCCTGTTTTA
*
14646767 CCCTCTGCCTCTTCTGTTC
1 CCCTCTGCCTCTTATGTTC
*
14646786 CCCTTTGCCTCTTATGTTC
1 CCCTCTGCCTCTTATGTTC
14646805 C
1 C
14646806 TTCCTTCTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.03, C:0.44, G:0.10, T:0.44
Consensus pattern (19 bp):
CCCTCTGCCTCTTATGTTC
Found at i:14650442 original size:15 final size:15
Alignment explanation
Indices: 14650407--14650458 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14650397 TTAAGAATTT
*
14650407 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14650421 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14650435 TATTTAATAATAAT-
1 TATTTAATTATAATA
14650449 TATGTTAATT
1 TAT-TTAATT
14650459 TAAATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14650466 original size:59 final size:59
Alignment explanation
Indices: 14650394--14650574 Score: 190
Period size: 59 Copynumber: 3.0 Consensus size: 59
14650384 AGAATATTAA
*
14650394 TTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG
1 TTATTAAAAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG
* * * * * * * * *
14650453 TTAATT-TAAATTTTA-TAGTATCATATATTATGATT-TGAGTAAATTCATATAAGAA-TATTG
1 TT-ATTAAAAATTTTATTA-AATTATATATTTTAATTAT-AATATATTTA-ATAATAATTA-TG
14650513 ATTATTAAAAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG
1 -TTATTAAAAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG
14650573 TT
1 TT
14650575 TAAATATGAT
Statistics
Matches: 93, Mismatches: 19, Indels: 20
0.70 0.14 0.15
Matches are distributed among these distances:
58 3 0.03
59 33 0.35
60 22 0.24
61 32 0.34
62 3 0.03
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (59 bp):
TTATTAAAAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG
Found at i:14650488 original size:120 final size:120
Alignment explanation
Indices: 14650356--14650574 Score: 420
Period size: 120 Copynumber: 1.8 Consensus size: 120
14650346 AACACGATTT
*
14650356 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
14650421 TTTTAATTATAATATATTTAATAATAATTATGTTAATTTAAATTTTATAGTATCA
66 TTTTAATTATAATATATTTAATAATAATTATGTTAATTTAAATTTTATAGTATCA
*
14650476 TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAAAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
14650541 TTTTAATTATAATATATTTAATAATAATTATGTT
66 TTTTAATTATAATATATTTAATAATAATTATGTT
14650575 TAAATATGAT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 97 1.00
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.49
Consensus pattern (120 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATTATGTTAATTTAAATTTTATAGTATCA
Found at i:14650527 original size:61 final size:60
Alignment explanation
Indices: 14650356--14650542 Score: 177
Period size: 61 Copynumber: 3.1 Consensus size: 60
14650346 AACACGATTT
* * *
14650356 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAAAATTTTA-TAAATCA
* * * * * * * *
14650417 TATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATT-TAAATTTTATAGTATCA
1 TATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAAAATTTTATA-AATCA
*
14650476 TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAAAATTTTATTAAATTA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAAAATTTTA-TAAATCA
14650537 TATATT
1 TATATT
14650543 TTAATTATAA
Statistics
Matches: 96, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 30 0.31
60 23 0.24
61 37 0.39
62 3 0.03
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (60 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAAAATTTTATAAATCA
Found at i:14650557 original size:16 final size:16
Alignment explanation
Indices: 14650536--14650577 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14650526 TTATTAAATT
*
14650536 ATATATTTTAATTATA
1 ATATATTTTAATAATA
14650552 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
14650567 AT-TATGTTTAA
1 ATATAT-TTTAA
14650578 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:14650562 original size:15 final size:15
Alignment explanation
Indices: 14650527--14650568 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14650517 TTAAAAATTT
*
14650527 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14650541 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14650555 TATTTAATAATAAT
1 TATTTAATTATAAT
14650569 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14650817 original size:16 final size:16
Alignment explanation
Indices: 14650792--14650845 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
14650782 TTGATTTGCT
14650792 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
14650808 ATTGCACCTCTATTCC
1 ATTACACCTCTATTCC
* *
14650824 ATTACGCCTCTAATCC
1 ATTACACCTCTATTCC
*
14650840 AATACA
1 ATTACA
14650846 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.28, C:0.35, G:0.04, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:14657735 original size:26 final size:25
Alignment explanation
Indices: 14657701--14657760 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
14657691 TTTTAGCAAA
* *
14657701 GGTAAAATCGTAAAAAATTTTACTGG
1 GGTAAAATCAT-AAAAATTTTACCGG
* *
14657727 GGTAGAATCATCAAAATTTTACCGG
1 GGTAAAATCATAAAAATTTTACCGG
14657752 GGCTAAAAT
1 GG-TAAAAT
14657761 AAAGATGAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (25 bp):
GGTAAAATCATAAAAATTTTACCGG
Found at i:14661030 original size:38 final size:38
Alignment explanation
Indices: 14660931--14661048 Score: 191
Period size: 38 Copynumber: 3.0 Consensus size: 38
14660921 GGCGAATGAG
14660931 ATAAGTTTTGAATAGGTAGTGTTAGAACTATACTATGT
1 ATAAGTTTTGAATAGGTAGTGTTAGAACTATACTATGT
*
14660969 ATAAGAACCCTTTGAATAGGTAGTGTTAGAACTATACTATGT
1 ATAAG----TTTTGAATAGGTAGTGTTAGAACTATACTATGT
14661011 ATAAGTTTTGAATAGGTAGTGTTAGAACTATACTATGT
1 ATAAGTTTTGAATAGGTAGTGTTAGAACTATACTATGT
14661049 GCCAAGTGTG
Statistics
Matches: 74, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
38 37 0.50
42 37 0.50
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (38 bp):
ATAAGTTTTGAATAGGTAGTGTTAGAACTATACTATGT
Found at i:14662125 original size:29 final size:29
Alignment explanation
Indices: 14662093--14662166 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 29
14662083 TTTTTAAAAG
*
14662093 GAAGCCTTTGTGGTGATCTCTGTTAT-ATA
1 GAAGCCATTGTGGTGATCTCTGTTATGA-A
* ** * *
14662122 GAAGCCCTTGTGACGATCTTTGTTATGAG
1 GAAGCCATTGTGGTGATCTCTGTTATGAA
14662151 GAAGCCATTGTGGTGA
1 GAAGCCATTGTGGTGA
14662167 CCTGATCGGC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
29 35 0.97
30 1 0.03
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (29 bp):
GAAGCCATTGTGGTGATCTCTGTTATGAA
Found at i:14664741 original size:18 final size:18
Alignment explanation
Indices: 14664720--14664768 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
14664710 TCATTTTTAG
*
14664720 CAACTTTTTCTTCAGCAA
1 CAACTTCTTCTTCAGCAA
* * *
14664738 CAACTTCCTCTCCTGCAA
1 CAACTTCTTCTTCAGCAA
14664756 CAACTTCTTCTTC
1 CAACTTCTTCTTC
14664769 TACAGCATCA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.22, C:0.37, G:0.04, T:0.37
Consensus pattern (18 bp):
CAACTTCTTCTTCAGCAA
Found at i:14664765 original size:21 final size:21
Alignment explanation
Indices: 14664741--14664783 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
14664731 TCAGCAACAA
* *
14664741 CTTCCTCTCCTGCAACAACTT
1 CTTCCTCTACAGCAACAACTT
* *
14664762 CTTCTTCTACAGCATCAACTT
1 CTTCCTCTACAGCAACAACTT
14664783 C
1 C
14664784 CTTCTCAGCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.40, G:0.05, T:0.35
Consensus pattern (21 bp):
CTTCCTCTACAGCAACAACTT
Found at i:14664792 original size:18 final size:19
Alignment explanation
Indices: 14664727--14664794 Score: 68
Period size: 18 Copynumber: 3.6 Consensus size: 19
14664717 TAGCAACTTT
*
14664727 TTCTTCAGCAACAACTTCC
1 TTCTACAGCAACAACTTCC
* *
14664746 -TCTCCTGCAACAACTTCTTC
1 TTCTACAGCAACAACTTC--C
*
14664766 TTCTACAGCATCAACTTCC
1 TTCTACAGCAACAACTTCC
14664785 TTCT-CAGCAA
1 TTCTACAGCAA
14664795 TAGTGTCCTC
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
18 20 0.50
19 5 0.12
20 1 0.03
21 14 0.35
ACGTcount: A:0.25, C:0.37, G:0.06, T:0.32
Consensus pattern (19 bp):
TTCTACAGCAACAACTTCC
Found at i:14677153 original size:46 final size:46
Alignment explanation
Indices: 14677038--14677205 Score: 214
Period size: 46 Copynumber: 3.7 Consensus size: 46
14677028 GATCGGAGGG
* * * *
14677038 TGCCATGGTGTCTTTCAACCATGGTCTTATTTATTTTCCA-CTTGC
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTAATTTTCCATCATGT
*
14677083 TGCCATAGTGTCTTTCAACCATGGTCTTATTAATTTTCCATCGTGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTAATTTTCCATCATGT
** *
14677129 TGCCATAGTGTCTTTC-ACCTATGGTCTTATCCATTTTCCGTCATGT
1 TGCCATAGTGTCTTTCAACC-ATGGTCTTATTAATTTTCCATCATGT
* * *
14677175 TGCCATAGCGTCTTTCAACTATGGTATTATT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATT
14677206 CGTTTGATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
45 41 0.38
46 65 0.60
47 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.43
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTATTAATTTTCCATCATGT
Found at i:14677224 original size:91 final size:91
Alignment explanation
Indices: 14677038--14677248 Score: 221
Period size: 91 Copynumber: 2.3 Consensus size: 91
14677028 GATCGGAGGG
* ** * *
14677038 TGCCATGGTGTCTTTCAACC-ATGGTCTTATTTATTTTCCACTTGCTGCCATAGTGTCTTTCAAC
1 TGCCATAGTGTCTTTC-ACCTATGGTCTTATCCATTTTCCACATGCTGCCATAGCGTCTTTCAAC
* * *
14677102 CATGGTCTTATTAATTTTCCATCGTGT
65 CATGGTATTATTAAGTTTCCATCGTGA
* *
14677129 TGCCATAGTGTCTTTCACCTATGGTCTTATCCATTTTCCGTCATGTTGCCATAGCGTCTTTCAAC
1 TGCCATAGTGTCTTTCACCTATGGTCTTATCCATTTTCC-ACATGCTGCCATAGCGTCTTTCAAC
* * * *
14677194 TATGGTATTATT-CGTTT-GATTTGTGA
65 CATGGTATTATTAAGTTTCCA-TCGTGA
** *
14677220 TGCCATAGCCTCTTTCAGCTATGGTCTTA
1 TGCCATAGTGTCTTTCACCTATGGTCTTA
14677249 CTCGATAAAA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
90 4 0.04
91 65 0.65
92 31 0.31
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.43
Consensus pattern (91 bp):
TGCCATAGTGTCTTTCACCTATGGTCTTATCCATTTTCCACATGCTGCCATAGCGTCTTTCAACC
ATGGTATTATTAAGTTTCCATCGTGA
Found at i:14677263 original size:45 final size:45
Alignment explanation
Indices: 14677175--14677342 Score: 201
Period size: 45 Copynumber: 3.7 Consensus size: 45
14677165 TCCGTCATGT
* * * * * * *
14677175 TGCCATAGCGTCTTTCAACTATGGTATTATTCGTTTGATTTGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATTGTGA
* * *
14677220 TGCCATAGCCTCTTTCAGCTATGGTCTTACTCGATAAAATTGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATTGTGA
* * *
14677265 TTCCATAACGTCTTTCAGTTATGGTCTTACTCGATAGAATCGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATTGTGA
* *
14677310 TGCAATAACGTCTTTCAGCTATGGCCTTACTCG
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCG
14677343 TTTCTAGAAT
Statistics
Matches: 105, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 105 1.00
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (45 bp):
TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATTGTGA
Found at i:14678827 original size:56 final size:56
Alignment explanation
Indices: 14678767--14678915 Score: 221
Period size: 56 Copynumber: 2.7 Consensus size: 56
14678757 TTTAAGGATG
* *
14678767 CCTTTGTGGCAAAACT-GTAGAAAGGTAAGCCTTGTGGAAAACCTATTAACATACAA
1 CCTTTGTGG-AAAAATAATAGAAAGGTAAGCCTTGTGGAAAACCTATTAACATACAA
*
14678823 CCTTTGTGGAAAAATAATGGAAAGGTAAGCCTTGTGGAAAACCTATTAACATACAA
1 CCTTTGTGGAAAAATAATAGAAAGGTAAGCCTTGTGGAAAACCTATTAACATACAA
* *
14678879 CC-TTATGGAAAAATAATGGAAAGGTAAGCCTTTGTGG
1 CCTTTGTGGAAAAATAATAGAAAGGTAAGCC-TTGTGG
14678916 CGAACTTTGT
Statistics
Matches: 87, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
55 32 0.37
56 55 0.63
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (56 bp):
CCTTTGTGGAAAAATAATAGAAAGGTAAGCCTTGTGGAAAACCTATTAACATACAA
Found at i:14678829 original size:28 final size:27
Alignment explanation
Indices: 14678796--14678890 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 27
14678786 GAAAGGTAAG
14678796 CCTTGTGGAAAACCTATTAACATACAA
1 CCTTGTGGAAAACCTATTAACATACAA
* * *
14678823 CCTTTGTGGAAAA-ATAATGGAA-AGGTA-AG
1 CC-TTGTGGAAAACCT-AT-TAACA--TACAA
14678852 CCTTGTGGAAAACCTATTAACATACAA
1 CCTTGTGGAAAACCTATTAACATACAA
*
14678879 CCTTATGGAAAA
1 CCTTGTGGAAAA
14678891 ATAATGGAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 16
0.70 0.09 0.21
Matches are distributed among these distances:
26 2 0.04
27 17 0.32
28 26 0.49
29 6 0.11
30 2 0.04
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (27 bp):
CCTTGTGGAAAACCTATTAACATACAA
Found at i:14678910 original size:28 final size:28
Alignment explanation
Indices: 14678829--14678910 Score: 73
Period size: 27 Copynumber: 3.0 Consensus size: 28
14678819 ACAACCTTTG
*
14678829 TGGAAAAATAATGGAAAGGTAAGCCTTG
1 TGGAAAAATAATGGAAAGGTAAGCCTTA
* * *
14678857 TGGAAAACCT-AT-TAACA--TACAACCTTA
1 TGGAAAA-ATAATGGAA-AGGTA-AGCCTTA
14678884 TGGAAAAATAATGGAAAGGTAAGCCTT
1 TGGAAAAATAATGGAAAGGTAAGCCTT
14678911 TGTGGCGAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
26 3 0.08
27 17 0.43
28 17 0.43
29 3 0.08
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.23
Consensus pattern (28 bp):
TGGAAAAATAATGGAAAGGTAAGCCTTA
Found at i:14678931 original size:29 final size:28
Alignment explanation
Indices: 14678898--14679086 Score: 86
Period size: 27 Copynumber: 6.7 Consensus size: 28
14678888 AAAATAATGG
14678898 AAAGGTAAGCCTTTGTGGCGAACTTTGTT
1 AAAGG-AAGCCTTTGTGGCGAACTTTGTT
* * *
14678927 AAAGGCA-CCTTTTGTGGCAAAACTTTG-G
1 AAAGGAAGCC-TTTGTGGC-GAACTTTGTT
* * *
14678955 AAACGGAAACCTTTGTGGCAAAC-CTGTT
1 AAA-GGAAGCCTTTGTGGCGAACTTTGTT
* ** * *
14678983 AAAGGAAAACCTTTGTGGTAAAAATCTAG--
1 AAAGG-AAGCCTTTGTGG-CGAACT-TTGTT
* * *
14679012 AAGGGTAAGCCTTTGTAGCGAACCTT-TT
1 AAAGG-AAGCCTTTGTGGCGAACTTTGTT
* * * *
14679040 AAAGGATGCCTTTGTGGTGAACCTT-CT
1 AAAGGAAGCCTTTGTGGCGAACTTTGTT
*
14679067 AAAGGACGCCTTTGTGGCGA
1 AAAGGAAGCCTTTGTGGCGA
14679087 GACGCTGAAA
Statistics
Matches: 123, Mismatches: 26, Indels: 24
0.71 0.15 0.14
Matches are distributed among these distances:
27 43 0.35
28 37 0.30
29 40 0.33
30 2 0.02
31 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (28 bp):
AAAGGAAGCCTTTGTGGCGAACTTTGTT
Found at i:14679025 original size:57 final size:56
Alignment explanation
Indices: 14678767--14679045 Score: 214
Period size: 56 Copynumber: 4.9 Consensus size: 56
14678757 TTTAAGGATG
* * * * *
14678767 CCTTTGTGGCAAAACTGTAGAAAGGTAAGCC-TTGTGGAAAACCTATTAACA-TACAA
1 CCTTTGTGG-AAAAATATGGAAAGGTAAGCCTTTGTGGCAAACCTATTAA-AGGACAA
* *
14678823 CCTTTGTGGAAAAATAATGGAAAGGTAAGCC-TTGTGGAAAACCTATTAACA-TACAA
1 CCTTTGTGGAAAAAT-ATGGAAAGGTAAGCCTTTGTGGCAAACCTATTAA-AGGACAA
* * * *
14678879 CC-TTATGGAAAAATAATGGAAAGGTAAGCCTTTGTGGCGAACTTTGTTAAAGG-C-A
1 CCTTTGTGGAAAAAT-ATGGAAAGGTAAGCCTTTGTGGCAAAC-CTATTAAAGGACAA
* * * * *
14678934 CCTTTTGTGGCAAAACTTTGGAAACGG-AAACCTTTGTGGCAAACCTGTTAAAGGAAAA
1 CC-TTTGTGG-AAAAATATGGAAA-GGTAAGCCTTTGTGGCAAACCTATTAAAGGACAA
* * * * * *
14678992 CCTTTGTGGTAAAAATCTAGAAGGGTAAGCCTTTGTAGCGAACCTTTTAAAGGA
1 CCTTTGTGG-AAAAATATGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGA
14679046 TGCCTTTGTG
Statistics
Matches: 187, Mismatches: 25, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
55 35 0.19
56 71 0.38
57 71 0.38
58 10 0.05
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (56 bp):
CCTTTGTGGAAAAATATGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGACAA
Found at i:14679061 original size:27 final size:27
Alignment explanation
Indices: 14679020--14679086 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
14679010 AGAAGGGTAA
* * *
14679020 GCCTTTGTAGCGAACCTTTTAAAGGAT
1 GCCTTTGTGGCGAACCTTCTAAAGGAC
*
14679047 GCCTTTGTGGTGAACCTTCTAAAGGAC
1 GCCTTTGTGGCGAACCTTCTAAAGGAC
14679074 GCCTTTGTGGCGA
1 GCCTTTGTGGCGA
14679087 GACGCTGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (27 bp):
GCCTTTGTGGCGAACCTTCTAAAGGAC
Found at i:14679982 original size:24 final size:24
Alignment explanation
Indices: 14679937--14679982 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
14679927 GCTGTGTCGC
*
14679937 AGCCCGCGCCCCAGGCCGTGTGAT
1 AGCCCGCGCCCCAGGCAGTGTGAT
* * *
14679961 AGCCCGTGCCCTAGGCATTGTG
1 AGCCCGCGCCCCAGGCAGTGTG
14679983 CTCCATAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (24 bp):
AGCCCGCGCCCCAGGCAGTGTGAT
Found at i:14690852 original size:8 final size:8
Alignment explanation
Indices: 14690841--14690868 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
14690831 TATTTGATAA
14690841 TTTGCTCT
1 TTTGCTCT
14690849 TTTGCTCT
1 TTTGCTCT
14690857 TTTGCTCT
1 TTTGCTCT
14690865 TTTG
1 TTTG
14690869 TTATAACTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.21, G:0.14, T:0.64
Consensus pattern (8 bp):
TTTGCTCT
Found at i:14699596 original size:53 final size:54
Alignment explanation
Indices: 14699520--14699622 Score: 154
Period size: 53 Copynumber: 1.9 Consensus size: 54
14699510 GCAATGGAAG
* *
14699520 ACCATATTGTGTAAGACCATAACTGGTGGATTATGGCATCATAT-GGGAAGAAT
1 ACCATACTGTGTAAGACCATAACTGGTGGATTATCGCATCATATAGGGAAGAAT
* * *
14699573 ACCATACTGTGTAAGATCGTAACTGGTGGGTTATCGCATCATATAGGGAA
1 ACCATACTGTGTAAGACCATAACTGGTGGATTATCGCATCATATAGGGAA
14699623 AATTAAGGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 39 0.89
54 5 0.11
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (54 bp):
ACCATACTGTGTAAGACCATAACTGGTGGATTATCGCATCATATAGGGAAGAAT
Found at i:14699839 original size:61 final size:61
Alignment explanation
Indices: 14699703--14699903 Score: 210
Period size: 61 Copynumber: 3.3 Consensus size: 61
14699693 GTGTGAGTCT
* * * **
14699703 AGGAAAGCCTTTGTGCAT-AGTCATGGATGTAAAGGAAAACCTTCATGG-AAAAATCTAGAC
1 AGGAAAGCCTTTGTG-GTGAGTAATGGATGTAAAGGAAAACCTTTATGGCAAATCTCTAGAC
* * * *
14699763 AGGAAAGCCTTTGTGGTGAGTAATGGATGTAAAGCACAACCTTTGTGGCAAATCTCTGGAC
1 AGGAAAGCCTTTGTGGTGAGTAATGGATGTAAAGGAAAACCTTTATGGCAAATCTCTAGAC
* * * * * * *
14699824 AGGAAAGCCTATGTGGCGAGTACTAGATGTAAAGGATAGCCTTTATGGCAAATCTCTA-AA
1 AGGAAAGCCTTTGTGGTGAGTAATGGATGTAAAGGAAAACCTTTATGGCAAATCTCTAGAC
*
14699884 ATGAAACGCCTTTGTGGTGA
1 AGGAAA-GCCTTTGTGGTGA
14699904 TCTTTTCCAA
Statistics
Matches: 116, Mismatches: 22, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
59 1 0.01
60 46 0.40
61 69 0.59
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25
Consensus pattern (61 bp):
AGGAAAGCCTTTGTGGTGAGTAATGGATGTAAAGGAAAACCTTTATGGCAAATCTCTAGAC
Found at i:14712397 original size:2 final size:2
Alignment explanation
Indices: 14712390--14712416 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14712380 TCAGTACATT
14712390 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
14712417 CTCAAATGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14712815 original size:41 final size:41
Alignment explanation
Indices: 14712799--14712919 Score: 206
Period size: 41 Copynumber: 3.0 Consensus size: 41
14712789 CCGAAATGTA
* *
14712799 TCACCGGTATTAAGCCTACTAGACGTAAAGTCTGAATTATT
1 TCACCGGAATCAAGCCTACTAGACGTAAAGTCTGAATTATT
*
14712840 TCACCGGCATCAAGCCTACTAGACGTAAAGTCTGAATTATT
1 TCACCGGAATCAAGCCTACTAGACGTAAAGTCTGAATTATT
*
14712881 TCACCGGAATCAAGCCTACTAGACGTAAAGTCTGTATTA
1 TCACCGGAATCAAGCCTACTAGACGTAAAGTCTGAATTA
14712920 CATCCGATCA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (41 bp):
TCACCGGAATCAAGCCTACTAGACGTAAAGTCTGAATTATT
Found at i:14716008 original size:47 final size:47
Alignment explanation
Indices: 14715852--14716001 Score: 237
Period size: 47 Copynumber: 3.2 Consensus size: 47
14715842 ATAGTAATGT
*
14715852 AGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTTTGC
1 AGATAAACTACCACTTAATAATATTGTGGACAAGCCACCACTTTTGC
* *
14715899 ATATAAACTACCACTTAATAAAATTGTGGACAAGCCACCACTTTTGC
1 AGATAAACTACCACTTAATAATATTGTGGACAAGCCACCACTTTTGC
* * **
14715946 AGATAAACTACCACTTTATAATATTGTGGACAAGCCAACACTTTTAT
1 AGATAAACTACCACTTAATAATATTGTGGACAAGCCACCACTTTTGC
14715993 AGATAAACT
1 AGATAAACT
14716002 GTCACTTCTT
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 94 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (47 bp):
AGATAAACTACCACTTAATAATATTGTGGACAAGCCACCACTTTTGC
Found at i:14717092 original size:16 final size:17
Alignment explanation
Indices: 14717061--14717099 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
14717051 TCACTCACTT
*
14717061 AAAAGAGAATAAATAAG
1 AAAAGGGAATAAATAAG
14717078 AAAAGGGAA-AAATAAG
1 AAAAGGGAATAAATAAG
14717094 AAAAGG
1 AAAAGG
14717100 AGAGGAGTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.69, C:0.00, G:0.23, T:0.08
Consensus pattern (17 bp):
AAAAGGGAATAAATAAG
Found at i:14718677 original size:15 final size:15
Alignment explanation
Indices: 14718659--14718710 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
14718649 TACTAAAAAC
14718659 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
14718674 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
14718693 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
14718708 ATT
1 ATT
14718711 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:14718982 original size:14 final size:13
Alignment explanation
Indices: 14718950--14718981 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14718940 ACATATAAGC
*
14718950 TTTTTTGGGCACT
1 TTTTTTAGGCACT
14718963 TTTTTTAGGCACT
1 TTTTTTAGGCACT
14718976 TTTTTT
1 TTTTTT
14718982 TTTTTAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.09, C:0.12, G:0.16, T:0.62
Consensus pattern (13 bp):
TTTTTTAGGCACT
Found at i:14721240 original size:24 final size:24
Alignment explanation
Indices: 14721209--14721266 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
14721199 CTAAACTAAT
14721209 CAAAGTTTAATTAAAACAAATAAA
1 CAAAGTTTAATTAAAACAAATAAA
* *
14721233 CAAAGTTTGATTGAAACAAATAAA
1 CAAAGTTTAATTAAAACAAATAAA
* *
14721257 TAGAGTTTAA
1 CAAAGTTTAA
14721267 CTGGAAGACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (24 bp):
CAAAGTTTAATTAAAACAAATAAA
Found at i:14722314 original size:24 final size:26
Alignment explanation
Indices: 14722272--14722320 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
14722262 CAATCTAGAA
14722272 AAAACATATAAATTATAAAAAAATAT
1 AAAACATATAAATTATAAAAAAATAT
*
14722298 AAAA-ATA-AAATTTTAAAAAAATA
1 AAAACATATAAATTATAAAAAAATA
14722321 CATAATTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 15 0.68
25 3 0.14
26 4 0.18
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (26 bp):
AAAACATATAAATTATAAAAAAATAT
Found at i:14722382 original size:10 final size:9
Alignment explanation
Indices: 14722360--14722401 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
14722350 ATAATATTAC
*
14722360 TAAAAAATG
1 TAAAAAATT
14722369 TAAAAAATTT
1 TAAAAAA-TT
14722379 TAAAAAAATT
1 T-AAAAAATT
14722389 T-AAAAATT
1 TAAAAAATT
14722397 TAAAA
1 TAAAA
14722402 TAAATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
8 8 0.28
9 10 0.34
10 5 0.17
11 6 0.21
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (9 bp):
TAAAAAATT
Found at i:14722384 original size:11 final size:10
Alignment explanation
Indices: 14722361--14722406 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
14722351 TAATATTACT
*
14722361 AAAAAATGTA
1 AAAAAATTTA
*
14722371 AAAAATTTTA
1 AAAAAATTTA
14722381 AAAAAATTT-
1 AAAAAATTTA
14722390 -AAAAATTTA
1 AAAAAATTTA
14722399 AAATAAAT
1 AAA-AAAT
14722407 ATTTTTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
8 8 0.27
10 18 0.60
11 4 0.13
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (10 bp):
AAAAAATTTA
Found at i:14722393 original size:19 final size:19
Alignment explanation
Indices: 14722361--14722406 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
14722351 TAATATTACT
14722361 AAAAAATGTAAAAAATTTTA
1 AAAAAATGTAAAAAA-TTTA
*
14722381 AAAAAAT-TTAAAAATTTA
1 AAAAAATGTAAAAAATTTA
14722399 AAATAAAT
1 AAA-AAAT
14722407 ATTTTTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 7 0.29
19 10 0.42
20 7 0.29
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAAAATGTAAAAAATTTA
Found at i:14722530 original size:19 final size:17
Alignment explanation
Indices: 14722482--14722530 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
14722472 GAAATTTAAA
*
14722482 TATATATTTTTTATTTT
1 TATATATTTTTTATTCT
*
14722499 TATAACATTTTTTAATTCT
1 TAT-ATATTTTTT-ATTCT
14722518 TATATATTATTTT
1 TATATATT-TTTT
14722531 GACTTTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 3 0.12
18 12 0.46
19 11 0.42
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (17 bp):
TATATATTTTTTATTCT
Found at i:14727770 original size:12 final size:12
Alignment explanation
Indices: 14727753--14727777 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14727743 ATCGTAAAGA
14727753 ATTGATAAATTG
1 ATTGATAAATTG
14727765 ATTGATAAATTG
1 ATTGATAAATTG
14727777 A
1 A
14727778 ATATGATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (12 bp):
ATTGATAAATTG
Found at i:14732370 original size:21 final size:20
Alignment explanation
Indices: 14732342--14732380 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14732332 GGAAAGTTGA
14732342 TTCCTTTGAATCAATTGTCT
1 TTCCTTTGAATCAATTGTCT
*
14732362 TTCCGTTTGAATCGATTGT
1 TTCC-TTTGAATCAATTGT
14732381 TTTTTTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (20 bp):
TTCCTTTGAATCAATTGTCT
Found at i:14732480 original size:105 final size:105
Alignment explanation
Indices: 14732286--14732485 Score: 276
Period size: 105 Copynumber: 1.9 Consensus size: 105
14732276 CGTTTTTCTA
* *
14732286 TTAGAATCGATTCATTATTGTTATTGATGTATTTGTGGAAAATGTTGGAAAGTTGATTCCTTTGA
1 TTAGAATCGATTCATTATTGTTATTGATGTATTTGTAGAAAATGTTGGAAAATTGATTCCTTTGA
* *
14732351 ATCAATTGTCTTTCCGTTTGAATCGATTGTTTTTTTTTTG
66 ATCAATTGTCTTTCCATTTAAATCGATTGTTTTTTTTTTG
* * * *
14732391 TTAGAATTGATTCCTTATTGTTATTGATGTATTTGTAG-AAATGGTTGGAAAATTGCTTCTTTTG
1 TTAGAATCGATTCATTATTGTTATTGATGTATTTGTAGAAAAT-GTTGGAAAATTGATTCCTTTG
** **
14732455 AATTGATTGTCTTTGTATTTAAATCGATTGT
65 AATCAATTGTCTTTCCATTTAAATCGATTGT
14732486 CTTTCTAGTT
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
104 4 0.05
105 78 0.95
ACGTcount: A:0.24, C:0.07, G:0.19, T:0.49
Consensus pattern (105 bp):
TTAGAATCGATTCATTATTGTTATTGATGTATTTGTAGAAAATGTTGGAAAATTGATTCCTTTGA
ATCAATTGTCTTTCCATTTAAATCGATTGTTTTTTTTTTG
Found at i:14733351 original size:26 final size:25
Alignment explanation
Indices: 14733323--14733396 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 25
14733313 CAAATCCCTA
*
14733323 TTTAGCCCTTAGTAAAATTTTGATGAT
1 TTTA-CCC-TAGTAAAATTTTGATAAT
*
14733350 TTTACCCTCGATAAAATTTTGATAAT
1 TTTACCCTAG-TAAAATTTTGATAAT
*
14733376 TTTACCCTGGTAAAATTTTGA
1 TTTACCCTAGTAAAATTTTGA
14733397 GAAAATATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
25 13 0.30
26 26 0.60
27 4 0.09
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (25 bp):
TTTACCCTAGTAAAATTTTGATAAT
Found at i:14733395 original size:25 final size:26
Alignment explanation
Indices: 14733334--14733396 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
14733324 TTAGCCCTTA
*
14733334 GTAAAATTTTGATGATTTTACCCTCG
1 GTAAAATTTTGATAATTTTACCCTCG
*
14733360 ATAAAATTTTGATAATTTTACCCT-G
1 GTAAAATTTTGATAATTTTACCCTCG
14733385 GTAAAATTTTGA
1 GTAAAATTTTGA
14733397 GAAAATATGT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 12 0.35
26 22 0.65
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (26 bp):
GTAAAATTTTGATAATTTTACCCTCG
Found at i:14737068 original size:5 final size:5
Alignment explanation
Indices: 14737058--14737083 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14737048 CTCAACTAAC
14737058 AAATA AAATA AAATA AAATA AAATA A
1 AAATA AAATA AAATA AAATA AAATA A
14737084 TAAAAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:14744480 original size:8 final size:8
Alignment explanation
Indices: 14744469--14744503 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
14744459 ATCAAAAATC
14744469 AAAAAG-A
1 AAAAAGAA
14744476 AAAAAGAA
1 AAAAAGAA
14744484 AAAAAGAAA
1 AAAAAG-AA
14744493 AAAAAGAA
1 AAAAAGAA
14744501 AAA
1 AAA
14744504 TCAAAATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 6 0.23
8 12 0.46
9 8 0.31
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:14744480 original size:15 final size:14
Alignment explanation
Indices: 14744469--14744503 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
14744459 ATCAAAAATC
14744469 AAAAAGAAAAAAGAA
1 AAAAAGAAAAAA-AA
14744484 AAAAAGAAAAAAAA
1 AAAAAGAAAAAAAA
14744498 GAAAAA
1 -AAAAA
14744504 TCAAAATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 2 0.11
15 17 0.89
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAAA
Found at i:14744494 original size:9 final size:9
Alignment explanation
Indices: 14744475--14744503 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14744465 AATCAAAAAG
14744475 AAAAAAG-A
1 AAAAAAGAA
14744483 AAAAAAGAA
1 AAAAAAGAA
14744492 AAAAAAGAA
1 AAAAAAGAA
14744501 AAA
1 AAA
14744504 TCAAAATCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.35
9 13 0.65
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:14747166 original size:132 final size:132
Alignment explanation
Indices: 14746729--14747228 Score: 756
Period size: 131 Copynumber: 3.8 Consensus size: 132
14746719 TCGGTGAAAT
* *
14746729 CACAAGTCTTATGTCCCTGGTCAGCAGTGGAGTAGGATGGAAATTACAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* * * *
14746794 CAGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTGCCCT-AGGAGTAGGGAAACAAATTTAA
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCTCAGGAGTAGGGAAACAGATTTAA
14746858 GC
131 GC
* *
14746860 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTAGAAATTATAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* * * *
14746925 CAGTAGCGGAGCAGATCGAAGAAGACGAATCTTATCTTCCC-CAAGAGTAGGGAAACAGATTTAA
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCTCAGGAGTAGGGAAACAGATTTAA
*
14746989 GT
131 GC
* *
14746991 CACAAGTCCTATGTCCCTAGTCAGCAGTGGAGTAGGTTGGAAATTACAAATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* *
14747056 CAATAGCGGAGCAGATCGAATACGGCGAATCTTATCTTCCCTCAGGAGTATGGAAACAGATTTAA
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCTCAGGAGTAGGGAAACAGATTTAA
14747121 GC
131 GC
* *
14747123 CACAAGTCCTATGTCCCTGGTCAACAGTGGAGTAGGTTGGAAATTACAGATCTTATCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* * * *
14747188 CAATAGTGGAGCTA-ATCGAAAATGGTGAATCTTATC-TCCCT
66 CAATAGCGGAGC-AGATCGAAGACGGCGAATCTTATCTTCCCT
14747229 GAGATTACAG
Statistics
Matches: 336, Mismatches: 30, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
131 222 0.66
132 113 0.34
133 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (132 bp):
CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCTCAGGAGTAGGGAAACAGATTTAA
GC
Found at i:14747263 original size:44 final size:41
Alignment explanation
Indices: 14747216--14747984 Score: 359
Period size: 44 Copynumber: 17.8 Consensus size: 41
14747206 AAAATGGTGA
*
14747216 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGC-AG
* * * **
14747258 TAATCTTATCTCCTTGAGATTACAGTGGAGCGGATTAAAATAAAGG
1 --ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAA-GCA-G
* * * * * *
14747304 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCAG
* * *
14747345 GTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA-G
* * * * * **
14747387 ATCCTATCTCCTTGA-AGTTATAGTGGAGTAGATTAAAATAAAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATT-GAA-GCA-G
* * * * * *
14747431 ATCTTATCTCTCTGA-ATTTACAGTAGAGTAGATCGCATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCAG
* * * ** *
14747472 GTCTTATCTCCTTGAGGTTACAGTGGATTAGATCGAAGAATTTCAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-----CAG
14747518 ATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTGAAGCCAGAG
1 ATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAG-C--AG
* * * *
14747562 ATCTTATCTCCTTGAAATTACAGCGGAGTAGATTGAAGCTAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGC-AG
* * * **
14747604 TAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGG
1 --ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAA-GCA-G
** * * * * *
14747650 ATCTTATCTCTTTGA-ATTTACAGTAGAGTAGATCGCATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCAG
* * *
14747691 TTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA-G
* * * * * **
14747733 ATCCTATCTCCCTGA-AGTTATAGTGAAGTAGATTAAAATAAAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATT-GAA-GCA-G
* * * * * *
14747777 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCAG
* * * **
14747818 GTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-----CAG
14747864 ATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTGAAGCCAGAG
1 ATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAG-C--AG
* * * *
14747908 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGACACT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CA-G
* *
14747951 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATT
14747985 AAAATAAAAG
Statistics
Matches: 546, Mismatches: 137, Indels: 85
0.71 0.18 0.11
Matches are distributed among these distances:
41 124 0.23
42 64 0.12
43 40 0.07
44 239 0.44
45 6 0.01
46 71 0.13
47 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (41 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAG
Found at i:14747445 original size:127 final size:129
Alignment explanation
Indices: 14747217--14747494 Score: 454
Period size: 127 Copynumber: 2.2 Consensus size: 129
14747207 AAATGGTGAA
* *
14747217 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCTTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTACTAATCCTATCTCCTTGAGATTACA
*
14747282 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
*
14747346 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-ACT-ATCCTATCTCCTTGA-AGTTAT
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTACTAATCCTATCTCCTTGAGA-TTAC
* *
14747408 AGTGGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
14747473 TCTTATCTCCTTGAGGTTACAG
1 TCTTATCTCCCTGAGATTACAG
14747495 TGGATTAGAT
Statistics
Matches: 140, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
126 1 0.01
127 99 0.71
128 2 0.01
129 38 0.27
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (129 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTACTAATCCTATCTCCTTGAGATTACA
GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
Found at i:14747551 original size:173 final size:172
Alignment explanation
Indices: 14747341--14747902 Score: 665
Period size: 173 Copynumber: 3.2 Consensus size: 172
14747331 GTAGATCGCA
*
14747341 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTT
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTT
14747406 ATAGTGGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCA
66 ATAGTGGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAA-TTACAGTAGAGTAGATCGCATCA
*
14747471 GGTCTTATCTCCTTGAGGTTACAGTGGATTAGATCGAAGAATT
130 GGTCTTATCTCCTTGAGGTTACAGTGGAGTAGATCGAAGAATT
* ** *
14747514 TCAGATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCTTGAA
1 TCAGATCTTATCTCCCTGA-GATTACAGCGGAGCAGATTGAAG-CA-CTATCCTATCTCCTTGAA
* * * ** * * * * ** *
14747578 ATTACAGCGGAGTAGATTGAAGCT--AGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTA
63 GTTATAGTGGAGTAGATT-AAAATAAAG-GATCTTATCTCTCTGA-ATTACAGTAGAGTAGA-TC
** * * ** * *
14747641 AAATAAAGGATCTTATCTCTTTGAATTTACAGTAGAGTAGATC---GCA--
124 GCAT-CAGG-TCTTATCTCCTTGAGGTTACAGTGGAGTAGATCGAAGAATT
* *
14747687 TCAGTTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTT
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTT
*
14747752 ATAGTGAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
66 ATAGTGGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAA-TTACAGTAGAGTAGATCGCATCA
* *
14747817 GGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATT
130 GGTCTTATCTCCTTGAGGTTACAGTGGAGTAGATCGAAGAATT
*
14747860 TCAGATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTGAAGC
1 TCAGATCTTATCTCCCTGA-GATTACAGCGGAGCAGATTGAAGC
14747903 CAGAGATCTT
Statistics
Matches: 313, Mismatches: 57, Indels: 38
0.77 0.14 0.09
Matches are distributed among these distances:
168 27 0.09
169 3 0.01
170 7 0.02
171 55 0.18
172 5 0.02
173 115 0.37
174 6 0.02
175 57 0.18
176 7 0.02
177 3 0.01
178 28 0.09
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (172 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTT
ATAGTGGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAATTACAGTAGAGTAGATCGCATCAG
GTCTTATCTCCTTGAGGTTACAGTGGAGTAGATCGAAGAATT
Found at i:14747649 original size:219 final size:214
Alignment explanation
Indices: 14747303--14747713 Score: 590
Period size: 219 Copynumber: 1.9 Consensus size: 214
14747293 TAAAATAAAG
* * * * *
14747303 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
1 GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAACCAGGTCTTATCTCCCTGAAATTACAG
* * *
14747368 CGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTTATAGTGGAGTAGATTAAAATAAAGGAT
66 CGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGAT
* *
14747433 CTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTTGAGGTTACAGTGG
131 CTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGG
14747498 ATTAGATCGAAGAATTTCA
196 ATTAGATCGAAGAATTTCA
* * * *
14747517 GATCTTATCTCCCTGATGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCTTGAAATTA
1 GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAA-CCAG-G-TCTTATCTCCCTGAAATTA
* * *
14747582 CAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTG-AGATTACAGTGGAGCGGATTAAAATA
63 CAGCGGAGCAGATTGAAGC-ACT-ATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATA
* *
14747646 AAGGATCTTATCTCTTTGAATTTACAGTAGAGTAGATCGCATCAGTTCTTATCTCCCTGAGATTA
125 AAGGATCTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA
14747711 CAG
190 CAG
14747714 CGGAGCAGAT
Statistics
Matches: 172, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
214 32 0.19
215 3 0.02
216 1 0.01
217 35 0.20
218 4 0.02
219 97 0.56
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (214 bp):
GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAACCAGGTCTTATCTCCCTGAAATTACAG
CGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGAT
CTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGG
ATTAGATCGAAGAATTTCA
Found at i:14747779 original size:127 final size:129
Alignment explanation
Indices: 14747517--14747845 Score: 421
Period size: 127 Copynumber: 2.5 Consensus size: 129
14747507 AAGAATTTCA
* * * * * * * * *
14747517 GATCTTATCTCCCTGATGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCTTGAAATTA
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA-TCAG-G-TCTTATCTCCCTGAGATTA
* * * *
14747582 CAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAA
63 CAGCGGAGCAGATTGAAGCTACTAATCCTATCTCCCTGAGATTACAGTGAAGCAGATTAAAATAA
14747647 AG
128 AG
* * *
14747649 GATCTTATCTCTTTGAATTTACAGTAGAGTAGATCGCATCAGTTCTTATCTCCCTGAGATTACAG
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
* *
14747714 CGGAGCAGATTGAAGC-ACT-ATCCTATCTCCCTGA-AGTTATAGTGAAGTAGATTAAAATAAAG
66 CGGAGCAGATTGAAGCTACTAATCCTATCTCCCTGAGA-TTACAGTGAAGCAGATTAAAATAAAG
*
14747776 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAG
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
*
14747841 TGGAG
66 CGGAG
14747846 TAGACCGAAG
Statistics
Matches: 173, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
126 1 0.01
127 102 0.59
128 2 0.01
129 35 0.20
131 3 0.02
132 30 0.17
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (129 bp):
GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
CGGAGCAGATTGAAGCTACTAATCCTATCTCCCTGAGATTACAGTGAAGCAGATTAAAATAAAG
Found at i:14747802 original size:346 final size:346
Alignment explanation
Indices: 14747216--14748063 Score: 1477
Period size: 346 Copynumber: 2.5 Consensus size: 346
14747206 AAAATGGTGA
* * *
14747216 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCTTGAGATTAC
1 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
*
14747281 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCAGG
*
14747346 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTTATAGT
131 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTATAGT
* *
14747411 GGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGGTCT
196 GAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* * *
14747476 TATCTCCTTGAGGTTACAGTGGATTAGATCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
261 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
14747541 TGGAGCAGATTGAAGCCAGAG
326 TGGAGCAGATTGAAGCCAGAG
* *
14747562 ATCTTATCTCCTTGAAATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* *
14747627 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAATTTACAGTAGAGTAGATCGCATCAGT
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCAGG
14747692 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTATAGT
131 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTATAGT
14747757 GAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
196 GAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
14747822 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
261 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
14747887 TGGAGCAGATTGAAGCCAGAG
326 TGGAGCAGATTGAAGCCAGAG
* *
14747908 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGAC-ACT-ATCCTATCTCCCTGA-AGTT
1 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAG-CTAGTAATCCTATCTCCCTGAGA-TT
* *
14747970 ACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATTA
64 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCA
* *
14748035 GGTCTTATCTCCCTGAGGTTACAGTGGAG
129 GGTCTTATCTCCCTGAGATTACAGCGGAG
14748064 TAGACCGAAG
Statistics
Matches: 476, Mismatches: 24, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
344 1 0.00
345 105 0.22
346 369 0.78
347 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (346 bp):
ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTATAGT
GAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
TGGAGCAGATTGAAGCCAGAG
Found at i:14747988 original size:218 final size:217
Alignment explanation
Indices: 14747692--14748086 Score: 700
Period size: 218 Copynumber: 1.8 Consensus size: 217
14747682 TCGCATCAGT
* * *
14747692 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTATAGT
1 TCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGCACTATCCTATCTCCCTGAAGTTACAGT
* *
14747757 GAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAAGCAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
14747822 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
131 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
14747887 TGGAGCAGATTGAAGCCAGAGA
196 TGGAGCAGATTGAAGCCAGAGA
14747909 TCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGACACTATCCTATCTCCCTGAAGTTACAG
1 TCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAG-CACTATCCTATCTCCCTGAAGTTACAG
* * * *
14747974 TGGAGCGGATTAAAATAAAAGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTC
65 TGAAGCAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
14748039 TTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
130 TTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
14748087 TGAAGTTACA
Statistics
Matches: 168, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
217 35 0.21
218 133 0.79
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (217 bp):
TCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGCACTATCCTATCTCCCTGAAGTTACAGT
GAAGCAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
TGGAGCAGATTGAAGCCAGAGA
Found at i:14748056 original size:41 final size:41
Alignment explanation
Indices: 14747305--14748147 Score: 313
Period size: 44 Copynumber: 19.8 Consensus size: 41
14747295 AAATAAAGGA
* * *
14747305 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
* * * *
14747346 TCTTATCTCCCTG-AGATTACAGCGGAGCAGATTGAAGCACTA--
1 TCTTATCTCCCTGAAG-TTACAGTGGAGTAGA-T--CGCATTAGG
* * * *** *
14747388 TCCTATCTCCTTGAAGTTATAGTGGAGTAGATTAAAATAAAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGA-TCGCAT-TAGG
* * * *
14747431 ATCTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGG
1 -TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
* * * * *
14747473 TCTTATCTCCTTGAGGTTACAGTGGATTAGATCGAAGAATTTCAGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATC---GCA-TT-AGG
* * * * **
14747519 TCTTATCTCCCTGATGTTACAGTGGAGCAGATTGAAGCCAGAG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCA-TTAG-G
* * * * * * *
14747562 ATCTTATCTCCTTGAAATTACAGCGGAGTAGATTGAAGCTAGTAA
1 -TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCA-TTAG--G
* ** *** *
14747607 TCCTATCTCCCTG-AGATTACAGTGGAGCGGATTAAAATAAAGG
1 TCTTATCTCCCTGAAG-TTACAGTGGAGTAGA-TCGCAT-TAGG
** * * * *
14747650 ATCTTATCTCTTTGAATTTACAGTAGAGTAGATCGCATCAGT
1 -TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
* * * *
14747692 TCTTATCTCCCTG-AGATTACAGCGGAGCAGATTGAAGCACTA--
1 TCTTATCTCCCTGAAG-TTACAGTGGAGTAGA-T--CGCATTAGG
* * * *** *
14747734 TCCTATCTCCCTGAAGTTATAGTGAAGTAGATTAAAATAAAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGA-TCGCAT-TAGG
* * *
14747777 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
1 -TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
* * * *
14747819 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATC---GCA-TT-AGG
* * * * **
14747865 TCTTATCTCCCTGATGTTACAGTGGAGCAGATTGAAGCCAGAG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCA-TTAG-G
* * * * *
14747908 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGACACTA--
1 -TCTTATCTCCCTGAAGTTACAGTGGAGTAGA-T--CG-CATTAGG
* ** *** * *
14747952 TCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAAGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGA-TCGCAT--TAGG
** *
14747996 TCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATTAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
* * * ** **
14748037 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATT
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
** *
14748078 TCAGATCT--TTGAAGTTACAGTGGAGTAGATCGCATTAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
*
14748117 TCTTATCTCCCTGATGTTACAGTGGAGTAGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGA
14748148 CCGAAGAATT
Statistics
Matches: 589, Mismatches: 165, Indels: 96
0.69 0.19 0.11
Matches are distributed among these distances:
39 29 0.05
40 8 0.01
41 164 0.28
42 65 0.11
43 52 0.09
44 196 0.33
45 10 0.02
46 61 0.10
47 3 0.01
48 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (41 bp):
TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
Found at i:14748100 original size:39 final size:39
Alignment explanation
Indices: 14748052--14748166 Score: 122
Period size: 41 Copynumber: 2.9 Consensus size: 39
14748042 TCTCCCTGAG
14748052 GTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTTGAA
1 GTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTTGAA
* * ** ** ** * *
14748091 GTTACAGTGGAGTAGATCGCATTAGGTCTTATCTCCCTGAT
1 GTTACAGTGGAGTAGACCGAAGAATTTCAGATCT--TTGAA
14748132 GTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
1 GTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
14748167 ATCTCCCTAA
Statistics
Matches: 55, Mismatches: 19, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
39 26 0.47
41 29 0.53
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (39 bp):
GTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTTGAA
Found at i:14748136 original size:80 final size:80
Alignment explanation
Indices: 14748003--14748166 Score: 310
Period size: 80 Copynumber: 2.0 Consensus size: 80
14747993 AGATCTTATC
14748003 TCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGA
1 TCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGA
14748068 CCGAAGAATTTCAGA
66 CCGAAGAATTTCAGA
* *
14748083 TCTTTGAAGTTACAGTGGAGTAGATCGCATTAGGTCTTATCTCCCTGATGTTACAGTGGAGTAGA
1 TCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGA
14748148 CCGAAGAATTTCAGA
66 CCGAAGAATTTCAGA
14748163 TCTT
1 TCTT
14748167 ATCTCCCTAA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (80 bp):
TCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGA
CCGAAGAATTTCAGA
Found at i:14748144 original size:298 final size:298
Alignment explanation
Indices: 14747789--14748326 Score: 751
Period size: 298 Copynumber: 1.8 Consensus size: 298
14747779 CTTATCTCTC
14747789 TGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGA
1 TGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGA
* * * * *
14747854 AGAATTTCAGATCTTATCTCCCTGATGTTA-CAGTGGAGCAGATTGAAGCCA-GAGATCTTATCT
66 AGAATTTCAGATCTTATCTCCCT-AAG-CAGCAGTGGAGCAGATCGAAGACACCA-ATCTTATCT
**
14747917 CCCTGAAATTACAGCGGAGCAGATTA-AAGACA-CTATCCTATCTCCCTGAAGTTACAGTGGAGC
128 CCCTGAAATTACAGCGGAGCAGA-TAGAAGACAGAAATCCTATCTCCCTGAAGTTACAGTGGAGC
* * * * *
14747980 GGATTAAAATAAAAGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTTATCT
192 GGATCAAAATAAAAGATCTCATCCCTCTGAAGTTACAGTAGAGCAGATCGCATTAGGTCTTATCT
14748045 CCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
257 CCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
* * *
14748087 TGAAGTTACAGTGGAGTAGATCGCATTAGGTCTTATCTCCCTGATGTTACAGTGGAGTAGACCGA
1 TGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGA
* * * *
14748152 AGAATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGATACCAATCTTATTTCCC
66 AGAATTTCAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACACCAATCTTATCTCCC
* * * * **
14748217 TGAGATTACAGCGGAGCAGATAGAAGCCAGAAATCTTATTTCCCTGAAGTTGTAGTGGAGCGGAT
131 TGAAATTACAGCGGAGCAGATAGAAGACAGAAATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT
* ** *
14748282 CAAAATGATGGATCTCATCCCTCTGAAGTTGCAGTAGAGCAGATC
196 CAAAATAAAAGATCTCATCCCTCTGAAGTTACAGTAGAGCAGATC
14748327 TCATCAGACT
Statistics
Matches: 207, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
296 3 0.01
297 53 0.26
298 151 0.73
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (298 bp):
TGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGA
AGAATTTCAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACACCAATCTTATCTCCC
TGAAATTACAGCGGAGCAGATAGAAGACAGAAATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT
CAAAATAAAAGATCTCATCCCTCTGAAGTTACAGTAGAGCAGATCGCATTAGGTCTTATCTCCCT
GAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
Found at i:14753922 original size:19 final size:18
Alignment explanation
Indices: 14753877--14753912 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
14753867 CCGTGTGACC
14753877 CTTATTTTCCAAAATTTT
1 CTTATTTTCCAAAATTTT
14753895 CTTATTTTCCAAAATTTT
1 CTTATTTTCCAAAATTTT
14753913 TATACTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.56
Consensus pattern (18 bp):
CTTATTTTCCAAAATTTT
Found at i:14765834 original size:17 final size:18
Alignment explanation
Indices: 14765812--14765848 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
14765802 TGATGTAATA
*
14765812 AACATT-ATATACACTTT
1 AACATTAATATACAATTT
14765829 AACATTAATATACAATTT
1 AACATTAATATACAATTT
14765847 AA
1 AA
14765849 AAAAGTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.38
Consensus pattern (18 bp):
AACATTAATATACAATTT
Found at i:14767605 original size:19 final size:19
Alignment explanation
Indices: 14767578--14767617 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
14767568 CAGTCATAAA
14767578 AATTGATTTAAACTTAT-AT
1 AATTGATTTAAA-TTATGAT
*
14767597 AATTTATTTAAATTATGAT
1 AATTGATTTAAATTATGAT
14767616 AA
1 AA
14767618 GCTACTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (19 bp):
AATTGATTTAAATTATGAT
Found at i:14768224 original size:18 final size:17
Alignment explanation
Indices: 14768201--14768234 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
14768191 CTATATTATT
14768201 AATTTTCAATGAATTTAA
1 AATTTTCAATG-ATTTAA
14768219 AATTTTCAATGATTTA
1 AATTTTCAATGATTTA
14768235 TCAAAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (17 bp):
AATTTTCAATGATTTAA
Found at i:14773742 original size:14 final size:14
Alignment explanation
Indices: 14773725--14773755 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14773715 CTTCCTTTGG
14773725 GTATGATCCTTGAA
1 GTATGATCCTTGAA
*
14773739 GTATGATCCTTGGA
1 GTATGATCCTTGAA
14773753 GTA
1 GTA
14773756 CTTCCAGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (14 bp):
GTATGATCCTTGAA
Found at i:14776187 original size:51 final size:50
Alignment explanation
Indices: 14776028--14776214 Score: 214
Period size: 51 Copynumber: 3.7 Consensus size: 50
14776018 TATTATCATT
* * * *
14776028 CGATACACGTAGTAGCCTTCAAATAGTACTACACACGTGATCAAACTTTC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAAACTTTC
* * * * *
14776078 CGGTTCACGTAGTAGCTTCCACATAGTACTACACATGTGACCAAAACCTTC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACC-AAACTTTC
* * * *
14776129 CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTA-TTTAT
1 CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCA-AACTTT-C
*
14776180 CGATACACGTAGTAGCCTGCACTTAGTACTACACA
1 CGATACACGTAGTAGCCTGCACATAGTACTACACA
14776215 CGTGTTTATA
Statistics
Matches: 116, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
50 38 0.33
51 78 0.67
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAAACTTTC
Found at i:14783847 original size:51 final size:50
Alignment explanation
Indices: 14783730--14783911 Score: 195
Period size: 51 Copynumber: 3.6 Consensus size: 50
14783720 TCAATACATG
* * * * *
14783730 TAGTAGCCTTCACATAGTACTACACACGTGATCAAACTTTTCGGTTCACG
1 TAGTAGCCTGCACATAGTACTACACACGTGATCAAACCTTCCGGTACACA
* *
14783780 TAGTAGCCTGCACATAGTACTACACACTTGATTAAAGCCTTCCGGTACACA
1 TAGTAGCCTGCACATAGTACTACACACGTGATCAAA-CCTTCCGGTACACA
* * * * * **
14783831 TAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTAT-CGATACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGATCA-AACCT-TCCGGTACACA
*
14783882 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACATAGTACTACACACGTG
14783912 TTTATAGGCA
Statistics
Matches: 111, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
50 33 0.30
51 76 0.68
52 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGATCAAACCTTCCGGTACACA
Found at i:14794512 original size:122 final size:122
Alignment explanation
Indices: 14794275--14794635 Score: 361
Period size: 122 Copynumber: 3.0 Consensus size: 122
14794265 AGAGGTTACA
* * * * ** * *
14794275 ACAAAGGCTTTCTTGTCCT-GATTTTTTCCACAAAGATTGTCCTTTACATTTAGTACTCGCTACA
1 ACAAAGGCTTTCCTGT-CTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTAATACTCGCCACA
* * * * * * *
14794339 AAGGCTTTCATGTCTAGAGTTGTGCCATAAAGACTGTCCTTTACATTCAGTACTCACC
65 AAGGCTTTCTTGTCAAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
* * * *
14794397 ATAAAGTCTTTCTTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTATTACTCGCCACAA
1 ACAAAGGCTTTCCTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTAATACTCGCCACAA
* * * *
14794462 AGGTTTTCTTGTCAAAAGTTGTGCCA-AAAGGGCTATCATTTATATCCAGTACTCGCC
66 AGGCTTTCTTGTCAAGAGTTGTGCCACAAA-GGCTATCCTTTATATCCAGTACTCACC
* * * * ** * *
14794519 ACAAAGGCTTTCCTGTCTAGATTTGTGCCACAAAGGCT-TCATTTATATCCAATACTCACCGCAA
1 ACAAAGGCTTTCCTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTAATACTCGCCACAA
* * *
14794583 AGGCTTTCTTGT-ACAGAGTTGTACCACAAAGGTTATCCTTTATATCTAGTACT
66 AGGCTTTCTTGTCA-AGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACT
14794636 TGTTGGATCA
Statistics
Matches: 198, Mismatches: 37, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
120 1 0.01
121 65 0.33
122 132 0.67
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (122 bp):
ACAAAGGCTTTCCTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTAATACTCGCCACAA
AGGCTTTCTTGTCAAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
Found at i:14794584 original size:60 final size:61
Alignment explanation
Indices: 14794275--14794635 Score: 316
Period size: 61 Copynumber: 5.9 Consensus size: 61
14794265 AGAGGTTACA
* * * ** * * ** * *
14794275 ACAAAGGCTTTCTTGTCCT-GATTTTTTCCACAAAGATTGTCCTTTACATTTAGTACTCGCT
1 ACAAAGGCTTTCTTGT-CTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
* * * * * *
14794336 ACAAAGGCTTTCATGTCTAGAGTTGTGCCATAAAGACTGTCCTTTACATTCAGTACTCACC
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
* * * * * ** * *
14794397 ATAAAGTCTTTCTTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTATTACTCGCC
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
* * * * *
14794458 ACAAAGGTTTTCTTGTCAAAAGTTGTGCCA-AAAGGGCTATCATTTATATCCAGTACTCGCC
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAA-GGCTATCCTTTATATCCAGTACTCACC
* * * *
14794519 ACAAAGGCTTTCCTGTCTAGATTTGTGCCACAAAGGCT-TCATTTATATCCAATACTCACC
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
* * * *
14794579 GCAAAGGCTTTCTTGTAC-AGAGTTGTACCACAAAGGTTATCCTTTATATCTAGTACT
1 ACAAAGGCTTTCTTGT-CTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACT
14794636 TGTTGGATCA
Statistics
Matches: 250, Mismatches: 45, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
60 56 0.22
61 191 0.76
62 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (61 bp):
ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
Found at i:14803974 original size:14 final size:14
Alignment explanation
Indices: 14803940--14803968 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14803930 AAATCTAGTG
14803940 TATGGTTGTAACGT
1 TATGGTTGTAACGT
14803954 TATGGTTGTAACGT
1 TATGGTTGTAACGT
14803968 T
1 T
14803969 TAGGTTTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.28, T:0.45
Consensus pattern (14 bp):
TATGGTTGTAACGT
Found at i:14818738 original size:196 final size:195
Alignment explanation
Indices: 14818392--14818782 Score: 613
Period size: 196 Copynumber: 2.0 Consensus size: 195
14818382 AAACTTCCTT
* * * *
14818392 TTCATAAATTCACAACATATGTTATTTGAACACTTATCGTTCATTTCCTTTTCATGCCAGTTGAA
1 TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCCTTTTCATACCAGTTGAA
* * *
14818457 CCATTTAGAATAACATCGGATACGCGAGAAAGCTCACACGAAGTGTGCTAAACATATGGTCCTAA
66 CCATTTAGAATAACATCGGATACGCGAGAAAGATCACACGAAGTGTGCTAAAAATATAGTCCTAA
14818522 CATTTCCTTTTCCCTTACATCGTCGCTCACTCGAGC-TGCAAAATGAGTCTGCTCACACAAGCTA
131 CATTTCCTTTTCCCTTACATCGTCGCTCACTCGAGCATG--AAATGAGTCTGCTCACACAAGCTA
14818586 AA
194 AA
* *
14818588 TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCTTTTTCATACCCGTTGAA
1 TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCCTTTTCATACCAGTTGAA
* **
14818653 CCATTTAGAATAACATCGGATACGCGGGAAAGATCACACGAAGTGTGCTAAAAATATAGTTGTAA
66 CCATTTAGAATAACATCGGATACGCGAGAAAGATCACACGAAGTGTGCTAAAAATATAGTCCTAA
* * *
14818718 CATTTCCTTTTCCTTTACATCGTGGCTCACTTGAGCAATGAAATGAGTCTGCTCACACAAGCTAA
131 CATTTCCTTTTCCCTTACATCGTCGCTCACTCGAGC-ATGAAATGAGTCTGCTCACACAAGCTAA
14818783 CTGTAACACC
Statistics
Matches: 178, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
196 176 0.99
198 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (195 bp):
TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCCTTTTCATACCAGTTGAA
CCATTTAGAATAACATCGGATACGCGAGAAAGATCACACGAAGTGTGCTAAAAATATAGTCCTAA
CATTTCCTTTTCCCTTACATCGTCGCTCACTCGAGCATGAAATGAGTCTGCTCACACAAGCTAAA
Found at i:14820143 original size:15 final size:15
Alignment explanation
Indices: 14820123--14820152 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14820113 CATCCCATGA
14820123 TAAGATAAGTTTCAT
1 TAAGATAAGTTTCAT
14820138 TAAGATAAGTTTCAT
1 TAAGATAAGTTTCAT
14820153 GAACATAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
TAAGATAAGTTTCAT
Found at i:14820160 original size:15 final size:15
Alignment explanation
Indices: 14820127--14820160 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14820117 CCATGATAAG
* *
14820127 ATAAGTTTCATTAAG
1 ATAAGTTTCATGAAC
14820142 ATAAGTTTCATGAAC
1 ATAAGTTTCATGAAC
14820157 ATAA
1 ATAA
14820161 CATACTTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (15 bp):
ATAAGTTTCATGAAC
Found at i:14823734 original size:19 final size:19
Alignment explanation
Indices: 14823722--14823762 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
14823712 TAAATAAAAT
14823722 AAAATGAAATAAAAGAAAG
1 AAAATGAAATAAAAGAAAG
* *
14823741 CAAATGAAATAAACGAAAG
1 AAAATGAAATAAAAGAAAG
14823760 AAA
1 AAA
14823763 GAAACAGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.71, C:0.05, G:0.15, T:0.10
Consensus pattern (19 bp):
AAAATGAAATAAAAGAAAG
Found at i:14823826 original size:18 final size:18
Alignment explanation
Indices: 14823805--14823839 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14823795 GAAACAGGGG
*
14823805 AGAAAGAAAGAAAGAAAA
1 AGAAAAAAAGAAAGAAAA
*
14823823 AGAAAAAAAGAGAGAAA
1 AGAAAAAAAGAAAGAAA
14823840 GAAAAAACTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAGAAAGAAAA
Found at i:14824475 original size:16 final size:16
Alignment explanation
Indices: 14824454--14824492 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
14824444 TTATGCGTAT
14824454 GGTAAG-CAAATAATAA
1 GGTAAGTCAAAT-ATAA
*
14824470 GGTAAGTGAAATATAA
1 GGTAAGTCAAATATAA
14824486 GGTAAGT
1 GGTAAGT
14824493 ATTATTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.49, C:0.03, G:0.26, T:0.23
Consensus pattern (16 bp):
GGTAAGTCAAATATAA
Found at i:14837214 original size:37 final size:37
Alignment explanation
Indices: 14837164--14837239 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
14837154 TCGGGTCTCC
*
14837164 TGTCTGATAATAACATGCCAAAGCCATGTCCTAGACA
1 TGTCTGATAATAACATGCCAAAGCCATGTCCCAGACA
14837201 TGTCTGATAATAACATGCCAAAGCCATGTCCCAGACA
1 TGTCTGATAATAACATGCCAAAGCCATGTCCCAGACA
14837238 TG
1 TG
14837240 GTCTTACATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (37 bp):
TGTCTGATAATAACATGCCAAAGCCATGTCCCAGACA
Found at i:14837365 original size:50 final size:50
Alignment explanation
Indices: 14837304--14837410 Score: 160
Period size: 50 Copynumber: 2.1 Consensus size: 50
14837294 ACATGAAAGT
* * *
14837304 TCTCATATCGGTGCCCATGCCATGTCCCAGACATAGTCTTACGGGGGACC
1 TCTCATATCGGTACCAACGCCATGTCCCAGACATAGTCTTACGGGGGACC
* * *
14837354 TCTCATCTCGGTACCAACGCCATGTCCCAGACATGGTCTTACGTGGGACC
1 TCTCATATCGGTACCAACGCCATGTCCCAGACATAGTCTTACGGGGGACC
14837404 TCTCATA
1 TCTCATA
14837411 ACCTCAATAA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (50 bp):
TCTCATATCGGTACCAACGCCATGTCCCAGACATAGTCTTACGGGGGACC
Found at i:14837441 original size:56 final size:50
Alignment explanation
Indices: 14837320--14837457 Score: 159
Period size: 50 Copynumber: 2.6 Consensus size: 50
14837310 ATCGGTGCCC
* * **
14837320 ATGCCATGTCCCAGACATAGTCTTACGGGGGACCTCTCATCTCGGTACCA
1 ATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATCTCAATACCA
* *
14837370 ACGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAACCTCAATAATTCTA
1 ATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCAT---CTCAAT-A--CCA
*
14837426 ATGCCATGTCCCAGACATGGTCTTACATGGGA
1 ATGCCATGTCCCAGACATGGTCTTACGTGGGA
14837458 TCTCATTCCC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
50 37 0.50
53 4 0.05
54 1 0.01
56 32 0.43
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATCTCAATACCA
Found at i:14839833 original size:109 final size:107
Alignment explanation
Indices: 14839612--14839939 Score: 392
Period size: 109 Copynumber: 3.0 Consensus size: 107
14839602 ATGACAATGA
* * * * * *
14839612 TATATGGTGTAAGACCATAGATAAAAGATGCTATAGTAGTATGGTATGAAGTACATAGCTAAGAC
1 TATATGGCGTAAGACCATAGATGAAAGAGGCTATGGTAGTCTGGTATGAAGTACGTAGCTAAGAC
*
14839677 CATGGATGAAAGATGTCATG-GCGTTATGGTA-AATGGTATAAGG
66 CATGGATGAAAGATGTCATGAG-G-AATGGTACAA-GGTATAAGG
* *
14839720 TATATGGCGTAAGACCATAGATGAAAGAGGCTATGGCAGTCTGCTATGAAGTACGTAGCATAAGA
1 TATATGGCGTAAGACCATAGATGAAAGAGGCTATGGTAGTCTGGTATGAAGTACGTAGC-TAAGA
* *
14839785 CTATAGATGAAAGATGTCATAGAGGAATGGTACAAGGTATAAGG
65 CCATGGATGAAAGATGTCAT-GAGGAATGGTACAAGGTATAAGG
* ** * * *
14839829 TATATGGCATAAGGTCATAGATGAAAGAGACTATGGTAGTCTGGT-TAAAGGTACGTAGTGTAAG
1 TATATGGCGTAAGACCATAGATGAAAGAGGCTATGGTAGTCTGGTATGAA-GTACGTAG-CTAAG
* *
14839893 ACCATGGATGAAAGATGTCATGATGGCATGGTACAAGGTATATGG
64 ACCATGGATGAAAGATGTCATGA-GGAATGGTACAAGGTATAAGG
14839938 TA
1 TA
14839940 ATAACTCTTG
Statistics
Matches: 190, Mismatches: 23, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
108 56 0.29
109 129 0.68
110 4 0.02
111 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.26
Consensus pattern (107 bp):
TATATGGCGTAAGACCATAGATGAAAGAGGCTATGGTAGTCTGGTATGAAGTACGTAGCTAAGAC
CATGGATGAAAGATGTCATGAGGAATGGTACAAGGTATAAGG
Found at i:14843348 original size:17 final size:18
Alignment explanation
Indices: 14843323--14843356 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14843313 GGTGAACTCC
*
14843323 AGGATTTGGCGGACTCTA
1 AGGATTTGGCAGACTCTA
14843341 AGGA-TTGGCAGACTCT
1 AGGATTTGGCAGACTCT
14843357 TCTGTTAAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (18 bp):
AGGATTTGGCAGACTCTA
Found at i:14845695 original size:7 final size:7
Alignment explanation
Indices: 14845683--14845734 Score: 86
Period size: 7 Copynumber: 7.1 Consensus size: 7
14845673 TGCATAAATA
14845683 AAACCCT
1 AAACCCT
14845690 AAACCCT
1 AAACCCT
14845697 AAACCCT
1 AAACCCT
14845704 AAAACCCT
1 -AAACCCT
14845712 AAACCCT
1 AAACCCT
14845719 AAAACCCT
1 -AAACCCT
14845727 AAACCCT
1 AAACCCT
14845734 A
1 A
14845735 TAAGAATTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
7 29 0.67
8 14 0.33
ACGTcount: A:0.46, C:0.40, G:0.00, T:0.13
Consensus pattern (7 bp):
AAACCCT
Found at i:14845699 original size:15 final size:15
Alignment explanation
Indices: 14845683--14845734 Score: 97
Period size: 15 Copynumber: 3.5 Consensus size: 15
14845673 TGCATAAATA
14845683 AAACCCT-AAACCCT
1 AAACCCTAAAACCCT
14845697 AAACCCTAAAACCCT
1 AAACCCTAAAACCCT
14845712 AAACCCTAAAACCCT
1 AAACCCTAAAACCCT
14845727 AAACCCTA
1 AAACCCTA
14845735 TAAGAATTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
14 7 0.19
15 30 0.81
ACGTcount: A:0.46, C:0.40, G:0.00, T:0.13
Consensus pattern (15 bp):
AAACCCTAAAACCCT
Found at i:14845706 original size:22 final size:23
Alignment explanation
Indices: 14845681--14845734 Score: 94
Period size: 22 Copynumber: 2.4 Consensus size: 23
14845671 GATGCATAAA
14845681 TAAAACCCTAAACCCT-AAACCC
1 TAAAACCCTAAACCCTAAAACCC
14845703 TAAAACCCTAAACCCTAAAACCC
1 TAAAACCCTAAACCCTAAAACCC
14845726 T-AAACCCTA
1 TAAAACCCTA
14845735 TAAGAATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 24 0.77
23 7 0.23
ACGTcount: A:0.46, C:0.39, G:0.00, T:0.15
Consensus pattern (23 bp):
TAAAACCCTAAACCCTAAAACCC
Found at i:14851087 original size:22 final size:22
Alignment explanation
Indices: 14851061--14851108 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
14851051 ATAAAAGGGC
14851061 AAATAA-AACTAATAATAATAAT
1 AAATAATAA-TAATAATAATAAT
* *
14851083 AAATAATAATAATGATGATAAT
1 AAATAATAATAATAATAATAAT
14851105 AAAT
1 AAAT
14851109 GCTAATACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (22 bp):
AAATAATAATAATAATAATAAT
Found at i:14851089 original size:13 final size:13
Alignment explanation
Indices: 14851071--14851095 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14851061 AAATAAAACT
14851071 AATAATAATAATA
1 AATAATAATAATA
14851084 AATAATAATAAT
1 AATAATAATAAT
14851096 GATGATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AATAATAATAATA
Done.