Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 53 of 168
Found at i:14854935 original size:22 final size:22
Alignment explanation
Indices: 14854909--14854953 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
14854899 AGATCAACAC
14854909 AAATAT-AATCACATACATATCA
1 AAATATCAATCACAT-CATATCA
*
14854931 AAATATCAATCTCATCATATCA
1 AAATATCAATCACATCATATCA
14854953 A
1 A
14854954 TCATCACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.29
Consensus pattern (22 bp):
AAATATCAATCACATCATATCA
Found at i:14858707 original size:23 final size:23
Alignment explanation
Indices: 14858632--14858716 Score: 81
Period size: 23 Copynumber: 3.8 Consensus size: 23
14858622 TACATCTTTT
14858632 AACTCATCATTCCCTTTTATTTC
1 AACTCATCATTCCCTTTTATTTC
* * *
14858655 -A-TCAT-ATTTCATTTT-TTTGGT
1 AACTCATCATTCCCTTTTATTT--C
14858676 AAC-CAATCATTCCCTTTTATTTC
1 AACTC-ATCATTCCCTTTTATTTC
14858699 AACTCATCATTCCCTTTT
1 AACTCATCATTCCCTTTT
14858717 CTTTGGCAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 16
0.69 0.09 0.23
Matches are distributed among these distances:
19 3 0.06
20 8 0.17
21 4 0.08
22 3 0.06
23 18 0.38
24 9 0.19
25 3 0.06
ACGTcount: A:0.22, C:0.26, G:0.02, T:0.49
Consensus pattern (23 bp):
AACTCATCATTCCCTTTTATTTC
Found at i:14868023 original size:24 final size:25
Alignment explanation
Indices: 14867957--14868028 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 25
14867947 GAGCGTCTCA
*
14867957 TTAT-TAGCTCTTAT-GAGCTTCTCG
1 TTATATAGCTCTT-TGGAGCTTCCCG
* *
14867981 TTATATGGTTC-TTGCGAGCTTCCCG
1 TTATATAGCTCTTTG-GAGCTTCCCG
*
14868006 TTA-ATAGCTCTTTGGAGCATCCC
1 TTATATAGCTCTTTGGAGCTTCCC
14868029 AATTGGTTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
23 1 0.03
24 18 0.47
25 19 0.50
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.40
Consensus pattern (25 bp):
TTATATAGCTCTTTGGAGCTTCCCG
Found at i:14868135 original size:27 final size:25
Alignment explanation
Indices: 14868092--14868162 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 25
14868082 CCTAATATAT
*
14868092 GGCTCTTTAGAGCTTCCCGATTAAA
1 GGCTCTTTAGAGCTTCCCAATTAAA
*
14868117 GGCTCTTTCATGAGCTTCCCAATTAATT
1 GGCTCTTT-A-GAGCTTCCCAATTAA-A
* *
14868145 GGCTCTCTAGGGCTTCCC
1 GGCTCTTTAGAGCTTCCC
14868163 TATATTGGCT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
25 8 0.21
26 9 0.23
27 15 0.38
28 7 0.18
ACGTcount: A:0.18, C:0.28, G:0.20, T:0.34
Consensus pattern (25 bp):
GGCTCTTTAGAGCTTCCCAATTAAA
Found at i:14877684 original size:30 final size:30
Alignment explanation
Indices: 14877650--14877818 Score: 132
Period size: 30 Copynumber: 5.7 Consensus size: 30
14877640 AACCTCAGTT
14877650 ATCAAATTATGAAAAGGGATGGTGACGACC
1 ATCAAATTATGAAAAGGGATGGTGACGACC
* * *
14877680 ATC-AATGAGGAAAAGGGATGGTGACGAGC
1 ATCAAATTATGAAAAGGGATGGTGACGACC
* * * ** * *
14877709 ATCAGA-CAGTGAAAAGGGATAGCT-TTGGCT
1 ATCAAATTA-TGAAAAGGGAT-GGTGACGACC
* * * *
14877739 GTCAAATTATGAAAAGGGATAGCT-TC-AGCT
1 ATCAAATTATGAAAAGGGAT-GGTGACGA-CC
14877769 ATCAAATTATGAAAAGGGATGGTGACGACC
1 ATCAAATTATGAAAAGGGATGGTGACGACC
*
14877799 ATCAAATAATGAAAAGGGAT
1 ATCAAATTATGAAAAGGGAT
14877819 AGTTTTGGCT
Statistics
Matches: 110, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
29 29 0.26
30 77 0.70
31 4 0.04
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.21
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATGGTGACGACC
Found at i:14877818 original size:90 final size:91
Alignment explanation
Indices: 14877609--14877853 Score: 264
Period size: 90 Copynumber: 2.7 Consensus size: 91
14877599 ACGGTGTACG
* * * ** * *
14877609 TGGTGACGACCATCAACTAATGAAAAGGGATAACCTCAGTTATCAAATTATGAAAAGGGAT-G-G
1 TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATTATGAAAAGGGATAGCT
*
14877672 TGACGACCATCAATGAGGAAAAGGGA
66 TCACGACCATCAATGAGGAAAAGGGA
* * * * *
14877698 TGGTGACGAGCATCAGACAGTGAAAAGGGATAGCTTTGGCTGTCAAATTATGAAAAGGGATAGCT
1 TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATTATGAAAAGGGATAGCT
* * *
14877763 TCA-G-CTATCAAATTATGAAAAGGGA
66 TCACGACCATC-AATGAGGAAAAGGGA
* *** *
14877788 TGGTGACGACCATCAAATAATGAAAAGGGATAGTTTTGGCTATCGGGTAATGAAAAGGGATAGCT
1 TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATTATGAAAAGGGATAGCT
14877853 T
66 T
14877854 TGGCTATCGA
Statistics
Matches: 127, Mismatches: 26, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
89 54 0.43
90 71 0.56
91 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (91 bp):
TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATTATGAAAAGGGATAGCT
TCACGACCATCAATGAGGAAAAGGGA
Found at i:14877831 original size:60 final size:60
Alignment explanation
Indices: 14877609--14877820 Score: 200
Period size: 60 Copynumber: 3.5 Consensus size: 60
14877599 ACGGTGTACG
* * * *
14877609 TGGTGACGACCATCAACTAATGAAAAGGGATAACCTCAGTTATCAAATTATGAAAAGGGA
1 TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTCAGCTATCAAATTATGAAAAGGGA
* * * * * *
14877669 TGGTGACGACCATC-AATGAGGAAAAGGGAT-GGTGACGAGC-ATCAGA-CAGTGAAAAGGGA
1 TGGTGACGACCATCAAATAATGAAAAGGGATAGCT-TC-AGCTATCAAATTA-TGAAAAGGGA
* ** * ** *
14877728 TAGCT-TTGGCTGTCAAATTATGAAAAGGGATAGCTTCAGCTATCAAATTATGAAAAGGGA
1 T-GGTGACGACCATCAAATAATGAAAAGGGATAGCTTCAGCTATCAAATTATGAAAAGGGA
14877788 TGGTGACGACCATCAAATAATGAAAAGGGATAG
1 TGGTGACGACCATCAAATAATGAAAAGGGATAG
14877821 TTTTGGCTAT
Statistics
Matches: 114, Mismatches: 29, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
58 1 0.01
59 39 0.34
60 71 0.62
61 3 0.03
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (60 bp):
TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTCAGCTATCAAATTATGAAAAGGGA
Found at i:14877839 original size:30 final size:30
Alignment explanation
Indices: 14877805--14877862 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
14877795 GACCATCAAA
*
14877805 TAATGAAAAGGGATAGTTTTGGCTATCGGG
1 TAATGAAAAGGGATAGCTTTGGCTATCGGG
14877835 TAATGAAAAGGGATAGCTTTGGCTATCG
1 TAATGAAAAGGGATAGCTTTGGCTATCG
14877863 AGCTATAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (30 bp):
TAATGAAAAGGGATAGCTTTGGCTATCGGG
Found at i:14877890 original size:90 final size:90
Alignment explanation
Indices: 14877690--14877891 Score: 217
Period size: 90 Copynumber: 2.2 Consensus size: 90
14877680 ATCAATGAGG
* * * * * * *
14877690 AAAAGGGATGGTGACGAGCATCAGACAGTGAAAAGGGATAGCTTTGGCTGTCAAATTATGAAAAG
1 AAAAGGGATGGTGACAACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATAATGAAAAG
* *
14877755 GGATAGCTTCAGCTATCAAATTATG
66 GGATAGCTTCAGCTATCAAACTATA
* * ***
14877780 AAAAGGGATGGTGACGACCATCAAATAATGAAAAGGGATAGTTTTGGCTATCGGGTAATGAAAAG
1 AAAAGGGATGGTGACAACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATAATGAAAAG
** * *
14877845 GGATAGCTTTGGCTATCGAGCTATAA
66 GGATAGCTTCAGCTATCAAACTAT-A
*
14877871 AAAAGGGTTGG-GACAACCATC
1 AAAAGGGATGGTGACAACCATC
14877892 GTGATTTTAC
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 83 0.89
91 10 0.11
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (90 bp):
AAAAGGGATGGTGACAACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATAATGAAAAG
GGATAGCTTCAGCTATCAAACTATA
Found at i:14878079 original size:21 final size:22
Alignment explanation
Indices: 14878036--14878079 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
14878026 TCTCATGTTG
*
14878036 GATTGATGCATATGTATTCTAA
1 GATTGATGCATATGTATTATAA
14878058 GATT-ATGCA-ATGTATTGATAA
1 GATTGATGCATATGTATT-ATAA
14878079 G
1 G
14878080 CATAGTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 9 0.45
22 4 0.20
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39
Consensus pattern (22 bp):
GATTGATGCATATGTATTATAA
Found at i:14879611 original size:22 final size:22
Alignment explanation
Indices: 14879586--14879629 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14879576 AATTATTAAC
* *
14879586 ATATTGAATTTTAATTACTTTT
1 ATATTAAATTTTAATTAATTTT
*
14879608 ATATTAAATTTTGATTAATTTT
1 ATATTAAATTTTAATTAATTTT
14879630 GATTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (22 bp):
ATATTAAATTTTAATTAATTTT
Found at i:14889497 original size:25 final size:25
Alignment explanation
Indices: 14889469--14889519 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
14889459 GATGCTTATC
*
14889469 GATATTCAGCTCACATGAGCTTACT
1 GATATTCAGATCACATGAGCTTACT
**
14889494 GATATTCAGATCGTATGAGCTTACT
1 GATATTCAGATCACATGAGCTTACT
14889519 G
1 G
14889520 TTTACAGCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (25 bp):
GATATTCAGATCACATGAGCTTACT
Found at i:14889562 original size:25 final size:25
Alignment explanation
Indices: 14889483--14889566 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
14889473 TTCAGCTCAC
*
14889483 ATGAGCTTACTGATATTCAGA--TCGT
1 ATGAGCATACTG--ATTCAGAGCTCGT
* * * *
14889508 ATGAGCTTACTG-TTTACAGCTTGT
1 ATGAGCATACTGATTCAGAGCTCGT
*
14889532 AAGAGCATACTGATTCAGAGCTCGT
1 ATGAGCATACTGATTCAGAGCTCGT
14889557 ATGAGCATAC
1 ATGAGCATAC
14889567 ATGTAGAAGA
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
22 4 0.09
24 13 0.28
25 30 0.64
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (25 bp):
ATGAGCATACTGATTCAGAGCTCGT
Found at i:14892945 original size:24 final size:24
Alignment explanation
Indices: 14892913--14892973 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
14892903 ATCCCTAAAA
*
14892913 CAATGAAAAGGTTC-AAAAGGATAT
1 CAATGAAAAGG-TCGAAAAGGATAG
*
14892937 CAATGAAAAGGTCGAAAATGATAG
1 CAATGAAAAGGTCGAAAAGGATAG
14892961 CAATG-AAAGGTCG
1 CAATGAAAAGGTCG
14892974 CTATCTCATC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 10 0.29
24 24 0.71
ACGTcount: A:0.48, C:0.10, G:0.25, T:0.18
Consensus pattern (24 bp):
CAATGAAAAGGTCGAAAAGGATAG
Found at i:14898991 original size:51 final size:49
Alignment explanation
Indices: 14898914--14899016 Score: 143
Period size: 51 Copynumber: 2.1 Consensus size: 49
14898904 AAACATGGTA
* *
14898914 GTTATAATTTTTTTTGGAAAGAATATAACATGTTTTTAATACTTTCCATAT
1 GTTATAATTCTTTTTGGAAAGAATATAAC--GTGTTTAATACTTTCCATAT
* * *
14898965 GTTATAATTCTTTTTGGAAAGGATATAACGTGTTTAATTCTTTCCTTAT
1 GTTATAATTCTTTTTGGAAAGAATATAACGTGTTTAATACTTTCCATAT
14899014 GTT
1 GTT
14899017 CTCTATAAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
49 20 0.43
51 27 0.57
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.50
Consensus pattern (49 bp):
GTTATAATTCTTTTTGGAAAGAATATAACGTGTTTAATACTTTCCATAT
Found at i:14905886 original size:50 final size:49
Alignment explanation
Indices: 14905810--14905911 Score: 141
Period size: 50 Copynumber: 2.1 Consensus size: 49
14905800 AAAAATGGTA
* ** *
14905810 GTTATAATTCTTTTTGGAAAGAATATAACGTTTTTTAATACTTTCCATAT
1 GTTATAATTCTTTTTGAAAAGAATATAA-AATGTTTAATACTTTCCATAT
* *
14905860 GTTATAATTCTTTTTGAAAAGTATATAAAATGTTTAATTCTTTCCATAT
1 GTTATAATTCTTTTTGAAAAGAATATAAAATGTTTAATACTTTCCATAT
14905909 GTT
1 GTT
14905912 GTCTATAAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
49 20 0.43
50 26 0.57
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.49
Consensus pattern (49 bp):
GTTATAATTCTTTTTGAAAAGAATATAAAATGTTTAATACTTTCCATAT
Found at i:14907989 original size:28 final size:28
Alignment explanation
Indices: 14907937--14908005 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
14907927 GTGTTCAAAC
* *
14907937 CCCTATAGGCAATCCCCTTACATGTGAAA
1 CCCTATAGGCGA-GCCCTTACATGTGAAA
* * **
14907966 CCTTATAGGCGAGCCCTTATATGTGACC
1 CCCTATAGGCGAGCCCTTACATGTGAAA
14907994 CCCTATAGGCGA
1 CCCTATAGGCGA
14908006 ACACCTAGTT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
28 23 0.70
29 10 0.30
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (28 bp):
CCCTATAGGCGAGCCCTTACATGTGAAA
Found at i:14908148 original size:17 final size:17
Alignment explanation
Indices: 14908126--14908173 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
14908116 TTTAACATGT
14908126 GAACCCTTTATGTATGC
1 GAACCCTTTATGTATGC
** *
14908143 GAACCCAATATTGCATGC
1 GAACCCTTTA-TGTATGC
*
14908161 GAACCCTTCATGT
1 GAACCCTTTATGT
14908174 TTGTTACATG
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (17 bp):
GAACCCTTTATGTATGC
Found at i:14910784 original size:12 final size:12
Alignment explanation
Indices: 14910767--14910796 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14910757 AGCCACATGC
14910767 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
14910779 CCGTGTGCTAGG
1 CCGTGTGCCAGG
14910791 CCGTGT
1 CCGTGT
14910797 AACAGCTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.30, G:0.40, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:14925613 original size:48 final size:48
Alignment explanation
Indices: 14925542--14925745 Score: 246
Period size: 48 Copynumber: 4.2 Consensus size: 48
14925532 TATGCACACT
* * * *
14925542 GATATTCTGTTATGACACAAGGGTGGCACGGACTGTGTGTAGGCCATC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
* * *
14925590 GATATTCTGTTATGATACAAGGGTGGCACAGACTATGTGCAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
* * * *
14925638 AATAACCTGTTAAGATACAAGGGTGGCACGGACTATGTGCAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
* * * * *
14925686 GAGAATCTGTTATTACACAAAGGTGGTACGGACTGTGTGCAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
*
14925734 GAGAAATCTGTT
1 GA-TAATCTGTT
14925746 TTTATTCTGA
Statistics
Matches: 135, Mismatches: 20, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
48 127 0.94
49 8 0.06
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
Found at i:14930134 original size:36 final size:36
Alignment explanation
Indices: 14930038--14930136 Score: 153
Period size: 37 Copynumber: 2.7 Consensus size: 36
14930028 TGAGAACCAT
*
14930038 CAAAGGGAATTATCTGCAAGCCAATAGATGAATTTA
1 CAAAGGGAATTATCTGCAAGCCAATGGATGAATTTA
* * *
14930074 CAAATTGTAATTATCTGCAGGCCAATGGATGAATTTA
1 CAAA-GGGAATTATCTGCAAGCCAATGGATGAATTTA
14930111 CAAAGGGAATTATCTGCAAGCCAATG
1 CAAAGGGAATTATCTGCAAGCCAATG
14930137 CGAAAAACCA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
36 23 0.42
37 32 0.58
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.26
Consensus pattern (36 bp):
CAAAGGGAATTATCTGCAAGCCAATGGATGAATTTA
Found at i:14935144 original size:45 final size:45
Alignment explanation
Indices: 14935077--14935164 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
14935067 ACAGATACTC
* *
14935077 GGTGGATTCAGCACATAACAACCACCTTATTAATCAATGATGTCT
1 GGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTCT
*
14935122 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 GGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGT
14935165 TCGGTTCACA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (45 bp):
GGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTCT
Found at i:14935233 original size:51 final size:49
Alignment explanation
Indices: 14935175--14935361 Score: 218
Period size: 51 Copynumber: 3.7 Consensus size: 49
14935165 TCGGTTCACA
*
14935175 TAGTAGCCTGCACATAGTACTACACATGTGACCATTATCATCCGATACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATCCG-TACATG
* * *
14935226 TAGTAGCCTGCACATAGTACTACACACGTGATCGA-AACTATCCTGTACGA-A
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATCC-GTAC-ATG
* * *
14935277 TAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-TCC-GTACATG
14935327 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
14935362 CACTTTCACT
Statistics
Matches: 114, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
49 2 0.02
50 42 0.37
51 66 0.58
52 4 0.04
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATATCATCCGTACATG
Found at i:14935350 original size:101 final size:101
Alignment explanation
Indices: 14935174--14935357 Score: 316
Period size: 101 Copynumber: 1.8 Consensus size: 101
14935164 TTCGGTTCAC
* *
14935174 ATAGTAGCCTGCACATAGTACTACACATGTGACCATTATCATCCGATACATGTAGTAGCCTGCAC
1 ATAGTAGCCTACACATAGTACTACACATGCGACCA-TATCATCCGATACATGTAGTAGCCTGCAC
14935239 ATAGTACTACACACGTGATCGAAACTATCCTGTACGA
65 ATAGTACTACACACGTGATCGAAACTATCCTGTACGA
*
14935276 ATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTACATGTAGTAGCCTGCAC
1 ATAGTAGCCTACACATAGTACTACACATGCGACCATATCA-TCCGATACATGTAGTAGCCTGCAC
14935340 ATAGTACTACACACGTGA
65 ATAGTACTACACACGTGA
14935358 CCATCACTTT
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
100 5 0.06
101 41 0.53
102 32 0.41
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (101 bp):
ATAGTAGCCTACACATAGTACTACACATGCGACCATATCATCCGATACATGTAGTAGCCTGCACA
TAGTACTACACACGTGATCGAAACTATCCTGTACGA
Found at i:14945224 original size:17 final size:17
Alignment explanation
Indices: 14945202--14945236 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14945192 AAATTATTTC
14945202 TAAAAAATAAATTAAAT
1 TAAAAAATAAATTAAAT
*
14945219 TAAAAAATTAATTAAAT
1 TAAAAAATAAATTAAAT
14945236 T
1 T
14945237 TTCTATTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAAAAAATAAATTAAAT
Found at i:14951958 original size:29 final size:28
Alignment explanation
Indices: 14951895--14951959 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
14951885 TGATCCTAAT
*
14951895 TTTAAAAATTTTAAAAATATATAAAAGTA
1 TTTAAATATTTTAAAAATATATAAAAG-A
**
14951924 CATAAATATTTTAAAAATATAATAATAA-A
1 TTTAAATATTTTAAAAATAT-ATAA-AAGA
14951953 TTTAAAT
1 TTTAAAT
14951960 TTTATATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
29 23 0.79
30 4 0.14
31 2 0.07
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (28 bp):
TTTAAATATTTTAAAAATATATAAAAGA
Found at i:14952106 original size:24 final size:24
Alignment explanation
Indices: 14952077--14952122 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
14952067 TACTAATAGT
* *
14952077 TTAAATATTGAATTATATTTTATA
1 TTAAATATTAAATTAAATTTTATA
14952101 TTAAATATTAAATTAAATTTTA
1 TTAAATATTAAATTAAATTTTA
14952123 ATTGTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TTAAATATTAAATTAAATTTTATA
Found at i:14959657 original size:50 final size:50
Alignment explanation
Indices: 14959541--14959727 Score: 167
Period size: 50 Copynumber: 3.6 Consensus size: 50
14959531 GAGATACAAT
* * * ** *
14959541 GTAAGACCATATCTGGGATATGGCATTGGCATCATTGTGATTACGAGAGGTCCCAT
1 GTAAGACCATGTCTGGGATATGGCATTGGCA-C--CGAGA-TA--AGAACTCCCAC
* * *
14959597 GTAAGACCATGTCTGGGATATGGCGTTGGCACCGAGATAAGAAGTCCCCC
1 GTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATAAGAACTCCCAC
* * * * * * *
14959647 GTAAGGCCATGTCTGGGACATGACATGGGCACCGATATGAGAACTCCCAT
1 GTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATAAGAACTCCCAC
*
14959697 GTAAGACCATATCTGGGATATGGCATTGGCA
1 GTAAGACCATGTCTGGGATATGGCATTGGCA
14959728 GTACAGGAAA
Statistics
Matches: 109, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
50 74 0.68
52 2 0.02
53 3 0.03
55 1 0.01
56 29 0.27
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATAAGAACTCCCAC
Found at i:14959995 original size:12 final size:12
Alignment explanation
Indices: 14959978--14960016 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14959968 ATGAGTTATT
14959978 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
14959990 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
14960002 TAAGAAAGTAAG
1 TAAGTAAGCAAG
14960014 TAA
1 TAA
14960017 AGAAGAAGCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.18
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:14966500 original size:33 final size:33
Alignment explanation
Indices: 14966454--14966520 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
14966444 TGTTTTATGG
14966454 TAGAATATAAAGCTTGGAACTATGTCAAACAAC
1 TAGAATATAAAGCTTGGAACTATGTCAAACAAC
*
14966487 TAGAATATGAAGCTTGGAACTATGTCAAACAAC
1 TAGAATATAAAGCTTGGAACTATGTCAAACAAC
14966520 T
1 T
14966521 TTTGGTAGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.25
Consensus pattern (33 bp):
TAGAATATAAAGCTTGGAACTATGTCAAACAAC
Found at i:14967559 original size:20 final size:20
Alignment explanation
Indices: 14967534--14967572 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14967524 TGAGTTATTT
*
14967534 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGAAAGTAAGTAAAC
*
14967554 AAGTAATAAAGTAAGTAAA
1 AAGTAAGAAAGTAAGTAAA
14967573 GAAGAAGCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.59, C:0.05, G:0.18, T:0.18
Consensus pattern (20 bp):
AAGTAAGAAAGTAAGTAAAC
Found at i:14968904 original size:28 final size:29
Alignment explanation
Indices: 14968852--14968951 Score: 96
Period size: 29 Copynumber: 3.5 Consensus size: 29
14968842 ATTTAAGGTC
** * *
14968852 GCCTTTGTGGCAAAACTTTGGAAAGGTAA
1 GCCTTTGTGGTGAAACTCTAGAAAGGTAA
* * *
14968881 GCCTTTGTGGTGTACCTGTA-AAAGGTCAA
1 GCCTTTGTGGTGAAACTCTAGAAAGGT-AA
**
14968910 -CCTTTGTGGCAAAACTCTAGAAAGGTAA
1 GCCTTTGTGGTGAAACTCTAGAAAGGTAA
14968938 GCCTTTGTGGTGAA
1 GCCTTTGTGGTGAA
14968952 CTTCTTAAGG
Statistics
Matches: 55, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
28 22 0.40
29 33 0.60
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (29 bp):
GCCTTTGTGGTGAAACTCTAGAAAGGTAA
Found at i:14969069 original size:29 final size:30
Alignment explanation
Indices: 14968985--14969069 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 30
14968975 AAAATCTCTA
** *
14968985 AAAGGAAAAGCCTTTGTGGCGATCTCTGTC
1 AAAGGAAAAGCCTTTGTGGAAATCTCCGTC
* * *
14969015 AAAGG-AAAGCCTCTGTGGAAAACTCCG-G
1 AAAGGAAAAGCCTTTGTGGAAATCTCCGTC
* *
14969043 ACAGGAAAAGCCTTTGTGGTAATCTCC
1 AAAGGAAAAGCCTTTGTGGAAATCTCC
14969070 ATAAATGAAG
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
28 4 0.09
29 35 0.80
30 5 0.11
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (30 bp):
AAAGGAAAAGCCTTTGTGGAAATCTCCGTC
Found at i:14971468 original size:33 final size:33
Alignment explanation
Indices: 14971425--14971537 Score: 154
Period size: 33 Copynumber: 3.4 Consensus size: 33
14971415 CGGCAGTCCA
* *
14971425 ACGATGGTGGAGTGGTGGTCCAACGGCGGTGTG
1 ACGATGGTGGAGTGGTGGTCCGACGGCGGTGCG
* *
14971458 GCGATGGTGGAGTGGTGGTCCGACAGCGGTGCG
1 ACGATGGTGGAGTGGTGGTCCGACGGCGGTGCG
* * *
14971491 ACAATGGTGGAGTGGTGGTCTGACGGCAGTGCG
1 ACGATGGTGGAGTGGTGGTCCGACGGCGGTGCG
*
14971524 ACTATGGTGGAGTG
1 ACGATGGTGGAGTG
14971538 TTAGCCCGAC
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 70 1.00
ACGTcount: A:0.16, C:0.15, G:0.48, T:0.21
Consensus pattern (33 bp):
ACGATGGTGGAGTGGTGGTCCGACGGCGGTGCG
Found at i:14973966 original size:27 final size:27
Alignment explanation
Indices: 14973931--14973996 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
14973921 ATCTATTGTT
* *
14973931 CCTTAAGAGTT-TGCCACACATATTGTC
1 CCTTCAGAGTTCT-CCACACATATTATC
* * *
14973958 TCTTCAGAGTTCTCCAGACATGTTATC
1 CCTTCAGAGTTCTCCACACATATTATC
14973985 CCTTCAGAGTTC
1 CCTTCAGAGTTC
14973997 ATCGGAGATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (27 bp):
CCTTCAGAGTTCTCCACACATATTATC
Found at i:14974217 original size:29 final size:28
Alignment explanation
Indices: 14974138--14974297 Score: 214
Period size: 29 Copynumber: 5.7 Consensus size: 28
14974128 CCTTAAATCT
* *
14974138 CCACAAAGGCTTCCATTTTCACAAATTG
1 CCACAAAGGCTTCCATTTTCATAGATTG
* *
14974166 CCACAAAGGCTACCATTTTCATATATTG
1 CCACAAAGGCTTCCATTTTCATAGATTG
*
14974194 CCACAAAAGCTTCCATTTCTCATAGATTG
1 CCACAAAGGCTTCCATTT-TCATAGATTG
*
14974223 CCACAAAAGCTTCCATTTTTCATAGATTG
1 CCACAAAGGCTTCCA-TTTTCATAGATTG
* * *
14974252 GCACAAAGGCTTCCATTTT-ATAGACTA
1 CCACAAAGGCTTCCATTTTCATAGATTG
14974279 CCACAAAGGCTTCCATTTT
1 CCACAAAGGCTTCCATTTT
14974298 TCTAGCGTGT
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
27 24 0.20
28 45 0.38
29 47 0.39
30 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.31
Consensus pattern (28 bp):
CCACAAAGGCTTCCATTTTCATAGATTG
Found at i:14974298 original size:56 final size:57
Alignment explanation
Indices: 14974138--14974299 Score: 220
Period size: 56 Copynumber: 2.9 Consensus size: 57
14974128 CCTTAAATCT
* * * *
14974138 CCACAAAGGCTTCCATTTTCACAAATTGCCACAAAGGCTACCA-TTTTCATATATTG
1 CCACAAAGGCTTCCATTTTCATAGATTGCCACAAAGGCTTCCATTTTTCATAGATTG
* *
14974194 CCACAAAAGCTTCCATTTCTCATAGATTGCCACAAAAGCTTCCATTTTTCATAGATTG
1 CCACAAAGGCTTCCATTT-TCATAGATTGCCACAAAGGCTTCCATTTTTCATAGATTG
* * *
14974252 GCACAAAGGCTTCCATTTT-ATAGACTACCACAAAGGCTTCCATTTTTC
1 CCACAAAGGCTTCCATTTTCATAGATTGCCACAAAGGCTTCCATTTTTC
14974300 TAGCGTGTTC
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
56 43 0.46
57 22 0.24
58 28 0.30
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (57 bp):
CCACAAAGGCTTCCATTTTCATAGATTGCCACAAAGGCTTCCATTTTTCATAGATTG
Found at i:14986573 original size:18 final size:18
Alignment explanation
Indices: 14986552--14986592 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
14986542 ATTCGGGTAA
*
14986552 AACCGAAAAAATTCGGTT
1 AACCGAAAAAATTCAGTT
**
14986570 AACCGACCAAATTCAGTT
1 AACCGAAAAAATTCAGTT
14986588 AACCG
1 AACCG
14986593 GTCGGTTAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (18 bp):
AACCGAAAAAATTCAGTT
Found at i:14986791 original size:18 final size:18
Alignment explanation
Indices: 14986768--14986807 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14986758 ACCTAATCCA
* *
14986768 AACCCAAGTATCCTACCC
1 AACCCAAGTACCCAACCC
*
14986786 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
14986804 AACC
1 AACC
14986808 TAATAATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.47, G:0.03, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:14986797 original size:13 final size:13
Alignment explanation
Indices: 14986781--14986805 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14986771 CCAAGTATCC
14986781 TACCCAACCCAAT
1 TACCCAACCCAAT
14986794 TACCCAACCCAA
1 TACCCAACCCAA
14986806 CCTAATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
TACCCAACCCAAT
Found at i:14986988 original size:9 final size:9
Alignment explanation
Indices: 14986940--14986990 Score: 59
Period size: 9 Copynumber: 5.7 Consensus size: 9
14986930 TTCAATTCTT
14986940 TTAATTCGAG
1 TTAATTCG-G
14986950 -TAATTCGG
1 TTAATTCGG
*
14986958 GTAATTCGG
1 TTAATTCGG
*
14986967 TTAATTTGG
1 TTAATTCGG
*
14986976 TTAATTCGA
1 TTAATTCGG
14986985 TTAATT
1 TTAATT
14986991 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
8 1 0.03
9 35 0.97
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45
Consensus pattern (9 bp):
TTAATTCGG
Found at i:14986991 original size:18 final size:18
Alignment explanation
Indices: 14986940--14986991 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
14986930 TTCAATTCTT
* *
14986940 TTAATTCGAGTAATTCGG
1 TTAATTCGATTAATTTGG
* *
14986958 GTAATTCGGTTAATTTGG
1 TTAATTCGATTAATTTGG
14986976 TTAATTCGATTAATTT
1 TTAATTCGATTAATTT
14986992 TTAACCAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46
Consensus pattern (18 bp):
TTAATTCGATTAATTTGG
Found at i:15001093 original size:11 final size:11
Alignment explanation
Indices: 15001077--15001113 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
15001067 TGGGCCCATG
15001077 TGGGCCGAATA
1 TGGGCCGAATA
*
15001088 TGGGCC--ATG
1 TGGGCCGAATA
15001097 TGGGCCGAATA
1 TGGGCCGAATA
15001108 TGGGCC
1 TGGGCC
15001114 ATGAGCCCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.36
11 14 0.64
ACGTcount: A:0.19, C:0.22, G:0.41, T:0.19
Consensus pattern (11 bp):
TGGGCCGAATA
Found at i:15001097 original size:20 final size:20
Alignment explanation
Indices: 15001067--15001116 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
15001057 TACGAGCGTG
15001067 TGGGCCCATGTGGGCCGAATA
1 TGGG-CCATGTGGGCCGAATA
15001088 TGGGCCATGTGGGCCGAATA
1 TGGGCCATGTGGGCCGAATA
15001108 TGGGCCATG
1 TGGGCCATG
15001117 AGCCCATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 25 0.86
21 4 0.14
ACGTcount: A:0.18, C:0.22, G:0.40, T:0.20
Consensus pattern (20 bp):
TGGGCCATGTGGGCCGAATA
Found at i:15001227 original size:27 final size:27
Alignment explanation
Indices: 15001188--15001360 Score: 204
Period size: 27 Copynumber: 6.4 Consensus size: 27
15001178 GGAAAGCTTA
*
15001188 TAAAATGATCGTAATACCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
15001215 TAAAATGACCGTAATAACCCTGTAGTGG
1 TAAAATGACCGTAATACCCCTGTAG-GG
* * *
15001243 -AAAATGACTGTAATGCCCCTATAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
15001269 TAAAATGATCGTAATACCCCTGTAAGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
15001296 TAAAATGACCGTAATGCCCCTGTAAGG
1 TAAAATGACCGTAATACCCCTGTAGGG
** * *
15001323 TAAAATGATTGTAATACCCTTGTAGGA
1 TAAAATGACCGTAATACCCCTGTAGGG
*
15001350 TAAAATAACCG
1 TAAAATGACCG
15001361 GAATGCCCTG
Statistics
Matches: 122, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 2 0.02
27 118 0.97
28 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTGTAGGG
Found at i:15001283 original size:81 final size:81
Alignment explanation
Indices: 15001187--15001355 Score: 241
Period size: 81 Copynumber: 2.1 Consensus size: 81
15001177 CGGAAAGCTT
*
15001187 ATAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATAACCCTGT-AGTGGAAAATGAC
1 ATAAAATGATCGTAATACCCCTGTAAGGTAAAATGACCGTAATAACCCTGTAAG-GGAAAATGAC
*
15001251 TGTAATGCCCCTATAGG
65 TGTAATACCCCTATAGG
* ** * *
15001268 GTAAAATGATCGTAATACCCCTGTAAGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGATT
1 ATAAAATGATCGTAATACCCCTGTAAGGTAAAATGACCGTAATAACCCTGTAAGGGAAAATGACT
* *
15001333 GTAATACCCTTGTAGG
66 GTAATACCCCTATAGG
15001349 ATAAAAT
1 ATAAAAT
15001356 AACCGGAATG
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 75 0.97
82 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (81 bp):
ATAAAATGATCGTAATACCCCTGTAAGGTAAAATGACCGTAATAACCCTGTAAGGGAAAATGACT
GTAATACCCCTATAGG
Found at i:15001354 original size:54 final size:52
Alignment explanation
Indices: 15001188--15001380 Score: 219
Period size: 54 Copynumber: 3.6 Consensus size: 52
15001178 GGAAAGCTTA
* * *
15001188 TAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATAACCCTGTAGTG
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAATGATCGTAAT-ACCCTGTAG-G
* * *
15001242 GAAAATGACTGTAATGCCCCTATAGGGTAAAATGATCGTAATACCCCTGTAAGG
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAATGATCGTAATA-CCCTGT-AGG
* *
15001296 TAAAATGACCGTAATGCCCCTGTAAGGTAAAATGATTGTAATACCCTTGTAGG
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAATGATCGTAATACCC-TGTAGG
* *
15001349 ATAAAATAACCGGAATG-CCCTGGT-GGGTAAAA
1 -TAAAATGACCGTAATGCCCCT-GTAGGGTAAAA
15001381 GACTATTTTG
Statistics
Matches: 120, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
53 18 0.15
54 100 0.83
55 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (52 bp):
TAAAATGACCGTAATGCCCCTGTAGGGTAAAATGATCGTAATACCCTGTAGG
Found at i:15001463 original size:24 final size:24
Alignment explanation
Indices: 15001405--15001485 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
15001395 TCGAGGTCAA
* * **
15001405 ATGATTGATTTGTCTGTG-GTTAA
1 ATGACTGATTTGTCTGTGATTTGT
*
15001428 ATAACTGATTTGTCTGTG-TTTGGT
1 ATGACTGATTTGTCTGTGATTT-GT
*
15001452 ATGACTGGTTTGTCTGTGATTTGT
1 ATGACTGATTTGTCTGTGATTTGT
15001476 ATGACTGATT
1 ATGACTGATT
15001486 CTGAGCATGG
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
23 18 0.38
24 27 0.56
25 3 0.06
ACGTcount: A:0.19, C:0.07, G:0.26, T:0.48
Consensus pattern (24 bp):
ATGACTGATTTGTCTGTGATTTGT
Found at i:15001703 original size:32 final size:31
Alignment explanation
Indices: 15001660--15001795 Score: 148
Period size: 32 Copynumber: 4.3 Consensus size: 31
15001650 GTGATGCTAT
*
15001660 TGATGGCTTTGTGCTGATCATATCACTGTTAC
1 TGATGGCTTTGTGCCGATCATATCACTG-TAC
* * *
15001692 TGATGGTTTTGTACCGATCATATTA-TCGATAC
1 TGATGGCTTTGTGCCGATCATATCACT-G-TAC
* *
15001724 TGATGACTATGTGCCGATCATATCACTGCTAC
1 TGATGGCTTTGTGCCGATCATATCACTG-TAC
* *
15001756 TGATGGCTTTGTGCCAATCATATTACTGTAC
1 TGATGGCTTTGTGCCGATCATATCACTGTAC
*
15001787 TTATGGCTT
1 TGATGGCTT
15001796 GTAGCCATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
31 12 0.14
32 73 0.85
33 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (31 bp):
TGATGGCTTTGTGCCGATCATATCACTGTAC
Found at i:15001744 original size:64 final size:64
Alignment explanation
Indices: 15001660--15001780 Score: 179
Period size: 64 Copynumber: 1.9 Consensus size: 64
15001650 GTGATGCTAT
* * * * * *
15001660 TGATGGCTTTGTGCTGATCATATCACTGTTACTGATGGTTTTGTACCGATCATATTATCGATAC
1 TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTACCAATCATATTATCGATAC
*
15001724 TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTGCCAATCATATTA
1 TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTACCAATCATATTA
15001781 CTGTACTTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 50 1.00
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (64 bp):
TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTACCAATCATATTATCGATAC
Found at i:15004573 original size:18 final size:19
Alignment explanation
Indices: 15004552--15004588 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
15004542 CTTGAAAAGT
*
15004552 ATATTGTGTGA-TGTGATG
1 ATATTATGTGATTGTGATG
15004570 ATATTATGTGATTGTGATG
1 ATATTATGTGATTGTGATG
15004589 TTTTTGCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (19 bp):
ATATTATGTGATTGTGATG
Found at i:15004857 original size:22 final size:22
Alignment explanation
Indices: 15004829--15004879 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
15004819 AGGAGGAAGA
15004829 TATGTGGCAGTTTATCT-ATAAT
1 TATGTGGCAGTTT-TCTGATAAT
** *
15004851 TATGTGGTTGTTTTTTGATAAT
1 TATGTGGCAGTTTTCTGATAAT
15004873 TATGTGG
1 TATGTGG
15004880 TGGCTTGTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.08
22 23 0.92
ACGTcount: A:0.22, C:0.04, G:0.24, T:0.51
Consensus pattern (22 bp):
TATGTGGCAGTTTTCTGATAAT
Found at i:15010256 original size:20 final size:20
Alignment explanation
Indices: 15010228--15010265 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15010218 CTGCAGTTTG
* *
15010228 AAAATTTTCATATTTTTCAT
1 AAAAATTTCATATGTTTCAT
15010248 AAAAATTTCATATGTTTC
1 AAAAATTTCATATGTTTC
15010266 CGATTTAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.50
Consensus pattern (20 bp):
AAAAATTTCATATGTTTCAT
Found at i:15015196 original size:23 final size:23
Alignment explanation
Indices: 15015170--15015216 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
15015160 ACTGGTCCAA
15015170 CCCTCTTAAGAACTCTATATGGT
1 CCCTCTTAAGAACTCTATATGGT
15015193 CCCTCTTAAGAACTCTATATGGT
1 CCCTCTTAAGAACTCTATATGGT
15015216 C
1 C
15015217 GAATGAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (23 bp):
CCCTCTTAAGAACTCTATATGGT
Found at i:15017726 original size:13 final size:13
Alignment explanation
Indices: 15017708--15017733 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15017698 TTGGATCCGT
15017708 ACCAAAACAATCA
1 ACCAAAACAATCA
15017721 ACCAAAACAATCA
1 ACCAAAACAATCA
15017734 TGAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:15027807 original size:13 final size:13
Alignment explanation
Indices: 15027789--15027813 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15027779 CACAAACGAT
15027789 AAAATTTTCACAC
1 AAAATTTTCACAC
15027802 AAAATTTTCACA
1 AAAATTTTCACA
15027814 TATATAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:15030405 original size:24 final size:24
Alignment explanation
Indices: 15030373--15030419 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
15030363 ATGAGTGGTG
15030373 TTGTGAAAAGGAAAGTAAGTTGAA
1 TTGTGAAAAGGAAAGTAAGTTGAA
15030397 TTGTGAAAAGGAAAGTAAGTTGA
1 TTGTGAAAAGGAAAGTAAGTTGA
15030420 CTTCCTAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.30, T:0.26
Consensus pattern (24 bp):
TTGTGAAAAGGAAAGTAAGTTGAA
Found at i:15040939 original size:30 final size:30
Alignment explanation
Indices: 15040816--15041154 Score: 276
Period size: 30 Copynumber: 11.2 Consensus size: 30
15040806 GTTGTTACCA
* * *
15040816 CCCTTTTGCATAGTTTGATAGCCAAAGCTAT
1 CCCTTTT-CATAATTTGATAGCCGAAGCCAT
* * *
15040847 CCATTTCCATATTTTGATAGCCGAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* ** * ** *
15040877 CCCTTTTCATGATTCAATGGTTGTCA-CCAT
1 CCCTTTTCATAATTTGATAGCCG-AAGCCAT
* *
15040907 CCCTATTCATAATTTGATAGCCGAAGCTAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* * * *
15040937 CCCATTTCAGAATTCGATAGCTGAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
*
15040967 CCCTTTTCATAATTTGATAGCCGAAGCCAC
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
*
15040997 CCCTTTTCATAATTTGATAGCCAAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* * *
15041027 CCCTTTTTCATAATTCGATGGTC-ATCA-CCAT
1 CCC-TTTTCATAATTTGATAGCCGA--AGCCAT
* * *
15041058 CCCTTTTCGT--TGTTGATAGTCGTCA-CCAT
1 CCCTTTTCATAAT-TTGATAGCCG-AAGCCAT
** *
15041087 CCCTTTTCATAATTCAATAGCCGAAGCTAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* *
15041117 CCCTTTTCATATTTTGATAGCCAAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
15041147 CCCCTTTT
1 -CCCTTTT
15041155 ATTGGTCGAT
Statistics
Matches: 241, Mismatches: 55, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
28 1 0.00
29 23 0.10
30 179 0.74
31 37 0.15
32 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (30 bp):
CCCTTTTCATAATTTGATAGCCGAAGCCAT
Found at i:15040956 original size:90 final size:89
Alignment explanation
Indices: 15040812--15041154 Score: 320
Period size: 90 Copynumber: 3.8 Consensus size: 89
15040802 GATGGTTGTT
* * *
15040812 ACCA-CCCTTTTGCATAGTTTGATAGCCAAAGCTAT-CCATTTCCATATTTTGATAGCCGAAGCC
1 ACCATCCCTTTT-CATAATTTGATAGCCAAAGCTATCCCATTT-CATAATTCGATAGCCGAAGCC
* * *
15040875 ATCCCTTTTCATGATTCAATGGTTGTC
64 ATCCCTTTTCATGATT-GATAGTCGTC
* * * *
15040902 ACCATCCCTATTCATAATTTGATAGCCGAAGCTATCCCATTTCAGAATTCGATAGCTGAAGCCAT
1 ACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCATTTCATAATTCGATAGCCGAAGCCAT
* * *
15040967 CCCTTTTCATAATTTGATAGCCG-A
66 CCCTTTTCATGA-TTGATAGTCGTC
* * * * *
15040991 AGCCACCCCTTTTCATAATTTGATAGCCAAAGCCATCCCTTTTTCATAATTCGATGGTC-ATCA-
1 A-CCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCC-ATTTCATAATTCGATAGCCGA--AG
*
15041054 CCATCCCTTTTCGTTG-TTGATAGTCGTC
62 CCATCCCTTTTC-ATGATTGATAGTCGTC
** * * * * *
15041082 ACCATCCCTTTTCATAATTCAATAGCCGAAGCTATCCCTTTTCATATTTTGATAGCCAAAGCCAT
1 ACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCATTTCATAATTCGATAGCCGAAGCCAT
15041147 CCCCTTTT
66 -CCCTTTT
15041155 ATTGGTCGAT
Statistics
Matches: 206, Mismatches: 35, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
88 1 0.00
89 20 0.10
90 142 0.69
91 41 0.20
92 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (89 bp):
ACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCATTTCATAATTCGATAGCCGAAGCCAT
CCCTTTTCATGATTGATAGTCGTC
Found at i:15046278 original size:51 final size:49
Alignment explanation
Indices: 15046147--15046330 Score: 199
Period size: 51 Copynumber: 3.7 Consensus size: 49
15046137 GAAAGTGATG
* * *
15046147 GTCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCAGA-ATGATAT
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-G-TAT
* * * *
15046197 GTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTCT
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TAT
* * *
15046247 GATCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGATAGTGAT
1 G-TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT-AT
* *
15046298 GGTCACATGTGTAGTACTATATTCAGGCTACTA
1 -GTCACATGTGTAGTACTATGTGCAGGCTACTA
15046331 AGTGAACTAG
Statistics
Matches: 111, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
50 42 0.38
51 68 0.61
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (49 bp):
GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTAT
Found at i:15052146 original size:30 final size:31
Alignment explanation
Indices: 15052056--15052423 Score: 248
Period size: 30 Copynumber: 12.3 Consensus size: 31
15052046 TTGTTACCAC
* * * *
15052056 CCCTTTTCATAGTTCGATAGTCG-AAGCTAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * *
15052086 CCCTTTCCATATTTTGAGAGCCG-AAGCCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * * *
15052116 CCCTTTTCATAATTCGATGGTCGTCA-CCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * * *
15052146 CCCTTTTCAT--TGTTAATGGTCGTCA-CCAT
1 CCCTTTTCATAAT-TTGATAGCCGTAAGCCAT
*
15052175 CCCTTTTCATAATTTGATAGCCG-AAGCTAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* *
15052205 CCCTTTTCATAATTGGATAACCG-AAGCCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * *
15052235 CCTTTTTCATAATTTGATAGCC-AAACCCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* *
15052265 CCATTTTCATAATTTGATAGCC-AAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * * *
15052295 CCCTTTTCAAAATTCGATGGCCGTCA-CCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * * * *
15052325 TCCTTTTCAT--TGTTGATGGTCATCA-CCAT
1 CCCTTTTCATAAT-TTGATAGCCGTAAGCCAT
* *
15052354 CCTTTTTCATAATTTGATAGCCG-AAGCTAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * * *
15052384 CCC-TTTCTATATTTTGATAACCG-ACGTCAT
1 CCCTTTTC-ATAATTTGATAGCCGTAAGCCAT
15052414 CCCTTTTCAT
1 CCCTTTTCAT
15052424 TGGTCGATGA
Statistics
Matches: 272, Mismatches: 53, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
28 2 0.01
29 53 0.19
30 209 0.77
31 8 0.03
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (31 bp):
CCCTTTTCATAATTTGATAGCCGTAAGCCAT
Found at i:15052174 original size:29 final size:30
Alignment explanation
Indices: 15052112--15052188 Score: 120
Period size: 29 Copynumber: 2.6 Consensus size: 30
15052102 AGAGCCGAAG
*
15052112 CCATCCCTTTTCATAATTCGATGGTCGTCA
1 CCATCCCTTTTCATAATTCAATGGTCGTCA
**
15052142 CCATCCCTTTTCATTGTT-AATGGTCGTCA
1 CCATCCCTTTTCATAATTCAATGGTCGTCA
15052171 CCATCCCTTTTCATAATT
1 CCATCCCTTTTCATAATT
15052189 TGATAGCCGA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 26 0.62
30 16 0.38
ACGTcount: A:0.19, C:0.30, G:0.10, T:0.40
Consensus pattern (30 bp):
CCATCCCTTTTCATAATTCAATGGTCGTCA
Found at i:15052197 original size:89 final size:89
Alignment explanation
Indices: 15052084--15052389 Score: 366
Period size: 89 Copynumber: 3.4 Consensus size: 89
15052074 AGTCGAAGCT
* * * *
15052084 ATCCCTTTCCATATTTTGAGAGCCGAAGCCATCCCTTTTCATAATTCGATGGTCGTCACCATCCC
1 ATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTTTCATAATTCGATGGCCGTCACCATCCC
* *
15052149 TTTTCATTGTTAATGGTCGTCACC
66 TTTTCATTGTTGATGGTCATCACC
* * ** *
15052173 ATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTGGATAACCG-AAGCCATCC
1 ATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTTTCATAATTCGATGGCCGTCA-CCATCC
* * * *
15052237 TTTTTCATAAT-TTGATAGCCA-AACCC
65 CTTTTCAT--TGTTGATGGTCATCA-CC
* * * *
15052263 ATCCATTTTCATAATTTGATAGCCAAAGCCATCCCTTTTCAAAATTCGATGGCCGTCACCATTCC
1 ATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTTTCATAATTCGATGGCCGTCACCATCCC
15052328 TTTTCATTGTTGATGGTCATCACC
66 TTTTCATTGTTGATGGTCATCACC
* *
15052352 ATCCTTTTTCATAATTTGATAGCCGAAGCTATCCCTTT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTT
15052390 CTATATTTTG
Statistics
Matches: 179, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
88 2 0.01
89 106 0.59
90 69 0.39
91 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (89 bp):
ATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTTTCATAATTCGATGGCCGTCACCATCCC
TTTTCATTGTTGATGGTCATCACC
Found at i:15052265 original size:119 final size:119
Alignment explanation
Indices: 15052042--15052274 Score: 288
Period size: 119 Copynumber: 2.0 Consensus size: 119
15052032 TAAAATCATG
* * * * * * *
15052042 ATGGTTGTTACCACCCCTTTTCATAGTTCGATAGTCGAAGCTATCCCTTTCCATATTTTGAGAGC
1 ATGGTCGTCACCACCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATAATTGGAGAAC
* * ** *
15052107 CGAAGCCATCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATTGTTA
66 CGAAGCCATCCCTTTTCATAATTCGATAGCCAACACCATCCATTTTCATTGTTA
* * * *
15052161 ATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTGGATAAC
1 ATGGTCGTCACCACCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATAATTGGAGAAC
* *
15052226 CGAAGCCATCCTTTTTCATAATTTGATAGCCAA-ACCCATCCATTTTCAT
66 CGAAGCCATCCCTTTTCATAATTCGATAGCCAACA-CCATCCATTTTCAT
15052275 AATTTGATAG
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
118 1 0.01
119 94 0.99
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.36
Consensus pattern (119 bp):
ATGGTCGTCACCACCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATAATTGGAGAAC
CGAAGCCATCCCTTTTCATAATTCGATAGCCAACACCATCCATTTTCATTGTTA
Found at i:15052363 original size:179 final size:179
Alignment explanation
Indices: 15052056--15052423 Score: 522
Period size: 179 Copynumber: 2.1 Consensus size: 179
15052046 TTGTTACCAC
* * * * * * * * *
15052056 CCCTTTTCATAGTTCGATAGTCGAAGCTATCCCTTTCCATATTTTGAGAGCCGAAGCCATCCCTT
1 CCCTTTTCATAATTTGATAGCCAAACCCATCCATTTCCATAATTTGAGAGCCAAAGCCATCCCTT
* * *
15052121 TTCATAATTCGATGGTCGTCACCATCCCTTTTCATTGTTAATGGTCGTCACCATCCCTTTTCATA
66 TTCAAAATTCGATGGCCGTCACCATCCCTTTTCATTGTTAATGGTCATCACCATCCCTTTTCATA
15052186 ATTTGATAGCCGAAGCTATCCCTTT-TCATAATTGGATAACCGAAGCCAT
131 ATTTGATAGCCGAAGCTATCCCTTTCT-ATAATTGGATAACCGAAGCCAT
* * *
15052235 CCTTTTTCATAATTTGATAGCCAAACCCATCCATTTTCATAATTTGATAGCCAAAGCCATCCCTT
1 CCCTTTTCATAATTTGATAGCCAAACCCATCCATTTCCATAATTTGAGAGCCAAAGCCATCCCTT
* * *
15052300 TTCAAAATTCGATGGCCGTCACCATTCCTTTTCATTGTTGATGGTCATCACCATCCTTTTTCATA
66 TTCAAAATTCGATGGCCGTCACCATCCCTTTTCATTGTTAATGGTCATCACCATCCCTTTTCATA
* * * *
15052365 ATTTGATAGCCGAAGCTATCCCTTTCTATATTTTGATAACCGACGTCAT
131 ATTTGATAGCCGAAGCTATCCCTTTCTATAATTGGATAACCGAAGCCAT
15052414 CCCTTTTCAT
1 CCCTTTTCAT
15052424 TGGTCGATGA
Statistics
Matches: 165, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
179 164 0.99
180 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (179 bp):
CCCTTTTCATAATTTGATAGCCAAACCCATCCATTTCCATAATTTGAGAGCCAAAGCCATCCCTT
TTCAAAATTCGATGGCCGTCACCATCCCTTTTCATTGTTAATGGTCATCACCATCCCTTTTCATA
ATTTGATAGCCGAAGCTATCCCTTTCTATAATTGGATAACCGAAGCCAT
Found at i:15053217 original size:21 final size:23
Alignment explanation
Indices: 15053193--15053240 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
15053183 ATGATAATTT
15053193 GTTTTACTTTA-TT-TTTACTTA
1 GTTTTACTTTATTTATTTACTTA
15053214 G-TTTA-TTTATTTATTTACTTA
1 GTTTTACTTTATTTATTTACTTA
15053235 -TTTTAC
1 GTTTTAC
15053241 CTTTTAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 4 0.17
20 6 0.26
21 13 0.57
ACGTcount: A:0.21, C:0.08, G:0.04, T:0.67
Consensus pattern (23 bp):
GTTTTACTTTATTTATTTACTTA
Found at i:15059753 original size:15 final size:15
Alignment explanation
Indices: 15059733--15059761 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15059723 TTTTACTTCT
15059733 CAAAAGCACTTTTTC
1 CAAAAGCACTTTTTC
15059748 CAAAAGCACTTTTT
1 CAAAAGCACTTTTT
15059762 AAAAGTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.34
Consensus pattern (15 bp):
CAAAAGCACTTTTTC
Found at i:15064645 original size:34 final size:34
Alignment explanation
Indices: 15064607--15064671 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
15064597 AAGTATCTTG
15064607 TATTTGAAATGGTTTCAGCTAACAATTTCAGTCC
1 TATTTGAAATGGTTTCAGCTAACAATTTCAGTCC
15064641 TATTTGAAATGGTTTCAGCTAACAATTTCAG
1 TATTTGAAATGGTTTCAGCTAACAATTTCAG
15064672 CTCAATTATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (34 bp):
TATTTGAAATGGTTTCAGCTAACAATTTCAGTCC
Found at i:15068832 original size:113 final size:113
Alignment explanation
Indices: 15068634--15068859 Score: 416
Period size: 113 Copynumber: 2.0 Consensus size: 113
15068624 GCAACATGTC
* * *
15068634 AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTGGTTCTTTTG
1 AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
15068699 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
66 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
*
15068747 AGTTAATCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
1 AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
15068812 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
66 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
15068860 CTGAGAAACC
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
113 109 1.00
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.42
Consensus pattern (113 bp):
AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
Found at i:15076489 original size:7 final size:7
Alignment explanation
Indices: 15076473--15076508 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
15076463 CCAATTTGTT
15076473 ATGC-TG
1 ATGCTTG
15076479 ATGCTTG
1 ATGCTTG
15076486 ATGCTTG
1 ATGCTTG
15076493 ATGCTTG
1 ATGCTTG
15076500 ATGCTTG
1 ATGCTTG
15076507 AT
1 AT
15076509 ACCTTAGCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 4 0.14
7 25 0.86
ACGTcount: A:0.17, C:0.14, G:0.28, T:0.42
Consensus pattern (7 bp):
ATGCTTG
Found at i:15082952 original size:234 final size:235
Alignment explanation
Indices: 15082541--15083004 Score: 675
Period size: 234 Copynumber: 2.0 Consensus size: 235
15082531 AATTAAATAA
15082541 ATGATGTTTAGAAAATGAATCTAAAAAAAATATATAAAATAAAATGGGAGGGGTGCAACACGAGG
1 ATGATGTTTAGAAAATGAATCTAAAAAAAATATATAAAAT-AAATGGGAGGGGTGCAACACGAGG
* * *
15082606 ACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACACTCGACTGCGGAGTTCTT
65 ACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACACTAGACTGCGAAGTTCTG
* * * *
15082671 ATGGGATCCGATGCATTAGTGCTAGTATGATCGCACCCGTGAACTCTTGCGCAATCTATTTATAT
130 ATGGGATCCGATGCATTAGTGCTAGTAAGATCGCAACCATCAACTCTTGCGCAATCTATTTATAT
*
15082736 GAAGGATGCACCTTATCGCACTTGCACCTCGAATTAGTTAC
195 AAAGGATGCACCTTATCGCACTTGCACCTCGAATTAGTTAC
** * *
15082777 ATGATGTTTAGAAAATGCAA-CTAAAAAAAAT-TATATGAT-AATGGGAGGGGTGCAGCACTAGG
1 ATGATGTTTAGAAAATG-AATCTAAAAAAAATATATAAAATAAATGGGAGGGGTGCAACACGAGG
* **
15082839 ACTTCCCAAGGAGGTCACCCATCCTAGTACTACTCTCGCTCAAGCATGCTTAG-CTGCGAAGTTC
65 ACTTCCCAA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACAC-TAGACTGCGAAGTTC
*
15082903 TGATGGGATCCGATGCATTAGTGCTAGTAAGATCGCAACTATCAACTCTTGCGCAATCTATTTAT
128 TGATGGGATCCGATGCATTAGTGCTAGTAAGATCGCAACCATCAACTCTTGCGCAATCTATTTAT
* * * * *
15082968 GTAAAGGCTGCCCCTTATCGTACTTGCGCCTCGAATT
193 ATAAAGGATGCACCTTATCGCACTTGCACCTCGAATT
15083005 TGAATAGAAA
Statistics
Matches: 204, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
233 30 0.15
234 136 0.67
235 8 0.04
236 28 0.14
237 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (235 bp):
ATGATGTTTAGAAAATGAATCTAAAAAAAATATATAAAATAAATGGGAGGGGTGCAACACGAGGA
CTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACACTAGACTGCGAAGTTCTGA
TGGGATCCGATGCATTAGTGCTAGTAAGATCGCAACCATCAACTCTTGCGCAATCTATTTATATA
AAGGATGCACCTTATCGCACTTGCACCTCGAATTAGTTAC
Found at i:15084010 original size:301 final size:302
Alignment explanation
Indices: 15082767--15091667 Score: 9188
Period size: 301 Copynumber: 29.6 Consensus size: 302
15082757 TTGCACCTCG
*
15082767 AATTAGTTACATGATGTTTAGAAAATGCAACTAAAAAAAA-TTATATG--AT--AATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * *
15082827 TGCAGCACTAGGACTTCCCAAGGAGGTCACCCATCCTAGTACTACTCTCGCTCAAGCATGCTTAG
66 TGCAACACGAGGACTTCCC-AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * * **
15082892 CTGCGAAGTTCTGATGGGATCCGATGCATTAGTGCTAGTAAGATCGCAACTATCAACTCTTGCGC
130 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * *
15082957 AATCTATTTATGTAAAGGCTGCCCCTTATCGTACTTGCGCCTCGAATTTGAATAG-AAATTTGAC
195 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAT-GCAAATTCGAC
* ** * *
15083021 CAAATAACGTTTCAAAAGATTTACCTCGCAGAAC-AAAATAACT
259 CAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
** * *
15083064 AATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAATTTTTTTTTGTTCTGAAATAAAATGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAA----AATTT-ATATGAAATAAAATGGG
*
15083128 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
61 AGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
** ** * * ** *
15083193 TTAACTGTAGAGTTCCAACGGGATCTGGTGCATTAGTGCTAATATGATCACACCCGTCAACTCTT
126 TTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
* * * *
15083258 GCGCAATCTATTTATATAAAGGCTACCCCTTATCGAATTTGCGCCTCGAATTTGAATGAAAATTC
191 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTC
* * * * *
15083323 GACCAAATAACCTTTCGAATGATTTATTTCGCCAAATGCAAATAAGT
256 GACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
15083370 AATTAGTTACACGAAGTTTAGAAAATGCAACT-AAAAAAA-TTGTATCAAAT-AAATCGGGAGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAAT-GGGAGGG
* * * * * * **
15083432 GTGCAACACGAGGAGTTTCCAGGAGGTCACACATCCTTGTACTACCCTCACCCAAGCTTGCTTAA
65 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
** * ** *
15083497 CTGTAGAGTTCTAATGGGATCCGGTGCATTAGTGCCAGTATGATCGCATCCGTCAACTCTTGCGC
130 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * * * * *
15083562 AATCTATTTACATAAAGGTTGCCCCTTATCGCACTTGCGCCTCAAAATTGATTGCAAATTTGATC
195 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * *
15083627 AAATAACGTTTCAAATGATTTGTTTCGCAAAAGGCAAATAGCT
260 AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
15083670 AATTATTTACATGATGTTTAGAAAATGCAACT-AAAAAAATTTATATGAAATAAAATGGGAGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * *
15083734 TGCAACAC-ATGGACATCCCAGGAGGTCACCCATTCTAGTACAACTCTCGCCCAGGCACGCTTTA
66 TGCAACACGA-GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * *
15083798 -TAGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTTGTATGATCGCACCCGTCAACTTTTGCG
130 CT-GCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * * * * * *
15083862 CAATCAATTTATATAAAAGCTGCCCCATATTGTACTTG-ACCTCGAATTTGAATGCAAGTTCGAC
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* *
15083926 CAAATAACGTTTCAAATGATTTATTTCGCAAAACGTAAATAGCT
259 CAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* *
15083970 AATTACTTATACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * *** *
15084035 TGCAACACGAGGACTTCCCAAGCGGTCACCCATCCTAGTAC-AGCTCTTATCCAAGCACGCTTAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA-CTCTCGCCCAAGCACGCTTAA
* * * ** *
15084099 CTGAGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGACCGCACTTGTCAACTATT--GC
130 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * *** * * * *
15084162 -A-C-----ATGT---GCCT-CAAATT-T-GCACATGTGCCTCGAATTTGATTGCAAATTTGACC
195 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* *
15084214 AAATAACGTTTCAAATGATTTGTTTCGCCAAAA-GAAAATAACT
260 AAATAACGTTTCAAATGATTTATTTCG-CAAAACGCAAATAACT
* * *
15084257 AATTAGTTACACGATGTTTAGAAAATACAACT-AAAAAAATGTATATGAAATAAAATAGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * *
15084321 TGCAACAAGAGGACGTCACAGGAGGTCACCCATCCTAGTAGTACTCTCCCCCAAGCACTCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * ** * *
15084386 TGCGGAGTTCTGATGGGGTCCAGTGAATTAGTGATGGTATGATCGCACCTATAAACTCGTGCGCA
131 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * * *
15084451 ATCTATTTATATAAAGGCTACCCTTTATCGCACTTGCGCCTCGAATTTGATTGCAAATTCAACCA
196 ATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * *
15084516 AATAACGTTTCAAATGATTTCCTTT-GTAAAACGCAAATAAGT
261 AATAACGTTTCAAATGATTT-ATTTCGCAAAACGCAAATAACT
*
15084558 AATTA-TATACACGGTGTTTAGAAAATGCAACT-AAAAAAATTTATATGAAATAAAATGGGA-GG
1 AATTAGT-TACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * * * * * * *
15084620 ATACAGCACGAGGACTTCCTAGGAGGTCACCCATCCTAATACTACCCTCACTCAAGCTCGCTTAA
65 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* ** * * * * * * *
15084685 TTGTAGAGTGT-TAATGGGATCCGCTGCATTAGTGCTAGTATGATCGCATCCGTCAGCTCTGGCA
130 CTGCGGAGT-TCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * *
15084749 CAA-CTATTTATATAAAGGCTGCCTCTTATCACACTTGCACCTCGAATTTGAATGCAAATTCGAC
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* ** * * *
15084813 CAAATAACGTTTCAAATGATTTGTTTAACAAAAAGCAAATTATT
259 CAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * * *
15084857 AATCAGTTGCACGTTGTTTAGAAAATACAACT-AAAAAAATTTATATGAAATAAAATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * *
15084921 TGCAACACGAGGACATCCCAGGAGGTCAACCATCCTAGTACTACTTTCGCCCAAGCATGCTTTAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * * * * *
15084986 AGCAGAGTTCTGATGGGACCCAGTGCATTAGTGCTGGTATGATCACACCCGTAAACTTTTCCGCA
131 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * * *
15085051 ATCAATTTATATAGAA-GCTACCCCATATCGTACTTGCGCCTCGAATTTGAATGCAAATTCGACC
196 ATCTATTTATATA-AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * * * *
15085115 AAATAA-GTTTAAAATGATTTATTTCACAAAATGAAAATACCT
260 AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *****
15085157 AATTATTTACACGATGTTTAGAAAAGGCAACTAAATTTTTTTTATATGAAATAAAATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * *
15085222 TGCAACATGAAGACTTCCTAGGAGGTCACCCATCCTACTACTACTCTCACCCAAGCACGCTT-AC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * ** *
15085286 CGAAGGAGTTTTGATGGGATCTAGTGCATTA-TAGCTGGTATGATCGCACCTGTCAACT-TGTGC
131 TG-CGGAGTTCTGATGGGATCCGGTGCATTAGT-GCTGGTATGATCGCACCCGTCAACTCT-TGC
* *
15085349 GCAATCTATTTATATAAAGGCTG-CCCTTATCGCACTTGCGCCTCGAATTTGATTACAAATTCGA
193 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * * *
15085413 CCAAATAACGTTGCAAGTGATTTGTTTCGCTAAAA-GTAAATAACT
258 CCAAATAACGTTTCAAATGATTTATTTCGC-AAAACGCAAATAACT
** *
15085458 AATTAGTTACACGATGTTTAGAAAAT---A-T-AAAAAAAGGTATATGAAATAAAATGTGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * * *
15085518 TGCAACATGAGGACATCCCAGGAGGTCATCCATCCTAGTAGTACTCTTGCCCAATCACTCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * * * * ** *
15085583 TGTGGAGTTCTGA-GGGGTCCAGTGAATTAG-GTTGGTATGATCGCACCTGTAAACTCGAGCGTA
131 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * * * * * * * * *
15085646 ATCGATTTAAATAAAGGCTTCCCTTTATCGTACTTGCACCTCAAATTTGATTGTAAATTTGACCA
196 ATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * *
15085711 AA-AACATTTCAAATGATTTCCTTT-GCAAAACACAAATAAGC-
261 AATAACGTTTCAAATGATTT-ATTTCGCAAAACGCAAATAA-CT
* *
15085752 AATTA-TATACACGGTATTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGA-GG
1 AATTAGT-TACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * * * ** ** *
15085815 ATGTAGCACGAGGACTTCCCAGGAGATCACCCAACCTAGTACTAC-CTTTACTAAAGCTCGCTTA
65 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTC-TCGCCCAAGCACGCTTA
** * * * * * * *
15085879 ACTGTAGAGTGCTAATGGGACCCGGTGCTTTAGTGCTAGTATGATCGCATCCGTCAACTCTAGCG
129 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * * *
15085944 CAATCTATTTATATAAATGCTGCCCCTTATTGCACTTGTGCCTCGAATTTGAATGTAAATTCGAC
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* * * *
15086009 CAAATAATGTTTCAAATGATTTGTTTCGCAAAAAGCAAAAAACT
259 CAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
15086053 AATTAGTTACACGATGTTTAGAAAATACAGCTAAAAAAAA-TTATATGAAATAAAATGGGAGGAG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * *
15086117 TGCAACACGAGGA-TATCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAGGCACACTTTA
66 TGCAACACGAGGACT-TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * * * *
15086181 CAGCGGTGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATTATCGCACCCGTAAACTTTTGCAC
130 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * *
15086246 AAACAATTTATATAAAGGCTGCCCCTTATCGTACTTGTGCCTCGAATTTGAATGCAAATTCGACC
195 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * **
15086311 AAATAATGTTTCAAATGATTTACTTCGCAAAACAAAAATAACT
260 AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * * *
15086354 AATTAGTTCCACGATGTTTAGAAAATACAAC-AAAAAGAATTTTTTTATGAAATAAAATGGGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAA-AA-ATTTATATGAAATAAAATGGGAGG
* * **
15086418 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTCCTACTTTTACCCAAGCACGCTTA
64 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * * * * * * *
15086483 GCTTCAGAGTTCTGACGGGATTCGGTGCATTAGTGCTAGTATGGTCGCACTCGTCAACTCTT-CT
129 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC-
* * * * *
15086547 GTAATCTATATATATAAAGGCTACCCCTTATCGCACTTGCACCTCGAATTTGATTGCAAATTCGA
193 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * *
15086612 CCAAATAACATTTGAAATGATTTCTTTC-CAAAAACGCAAATAACT
258 CCAAATAACGTTTCAAATGATTTATTTCGC-AAAACGCAAATAACT
* *** * **
15086657 AATTAGTTACACGATGTTTAGAAAATGCAATTAAAAATTGTTTTTTTACAAAATAAAATGGGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAA--AAATTTATATGAAATAAAATGGGAGG
* * ** * ** **
15086722 GGTGCAACACGAGGACTTTCTAACAAGTTGCCCATCCTAGTACGGCTCTCGCCCATA--AGCGCT
64 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA-AGCA-CGCT
* * * * *
15086785 TAACTGCGGAGTTCTGATGGGATCTGGCGCATTAGTGCGGGTACGATCACACCCGTCAACTCTTG
127 TAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTG
* * *
15086850 CGCAATCTATTTATATAAAGGCTGCTCGTTATCGCACTTGCGCCTCGAATTTGAATGTAAATTCG
192 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCG
** * * *
15086915 ACCAAATAACGTTTCAAATTCTTTATTTCGAAAAACGCGAATAAGT
257 ACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
15086961 AATTACTTACACAATGTTTGGAAAATGCAACTAAAAAACAAATTTATATGAAATAAAATGGGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACT-AAAAA-AAATTTATATGAAATAAAATGGGAGG
* * * * ** *
15087026 GGTGCAACACGTGGACTTCCCA-AAGGGTCACCCAACCTAGTACTGCTCTTTCCCAAGCAAGCTT
64 GGTGCAACACGAGGACTTCCCAGGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
* * * ** * * *
15087090 AATTGCGGAGTTTTGATTGGATCTAGTGC-TTAAGTGCGGGTATGATCGCACCCATCAACTATTG
128 AACTGCGGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTTG
* * * *
15087154 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGTACTTGCGCCTCAAATTTGACTGGAAATTCG
192 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCG
* * *
15087219 ACCAAAGAACGTTTCAAATGATTTCTTTCGCAAAACACAAATAACT
257 ACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* **** * *
15087265 AATTAGTTACATGATGTTTAGAAAATGCAACTAAAATTTTTTTCTACGAAATAAAATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * *
15087330 TGCAAGACGAGGACTTCCCAAGAGGTCACCCACCCAAATACTACTCTC-TCCAGAGCACGCTTAA
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA-AGCACGCTTAA
* * * * * * * *
15087394 CTGCAGAGTTCTAATAGGATCCGGTGCATTATTGCTGGTATGATCGCTCTCGTCAACTCTTTCAC
130 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * * * *
15087459 AATCTATTAATATAAAGGTTGCCCCTTATCGTACATGTGCCTCGAATTTGAATACAAATTCGACC
195 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * * * * *
15087524 ATATAATGTTTCAAATTATTTATTTCGGAAAACACAAATAAGT
260 AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
15087567 AATTAGTTACACGATGTTTGGAAAATGCAACTAAAAAAAA-TTATATGAAATAAAATGAGAGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * *
15087631 TGCAACATGAGGACTTCCTAAGG-GGTCACCCATCTTAGTACTACTCACTCCCAACCACGCTTAA
66 TGCAACACGAGGACTTCC-CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * **
15087695 CTGC---G----G-T--G---C--T---TAAGTGCTGGTATGGTCGCACCCGTCAACTATTGCAT
130 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * ** * *
15087742 AATCTATTTAAATAATGGATGCCCCTTATCGCACTTATGCCTCCACTTT-AATTGCAAATTCGAC
195 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAA-TGCAAATTCGAC
* *
15087806 CAAATAATC-TTTCAAATGATTTGTTTCGCAGAACGCAAATAACT
259 CAAATAA-CGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
*** * * *
15087850 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAATTGTTTTTCTACGAAATAAAACGGGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAA--AAATTTATATGAAATAAAATGGGAGG
* * *** * * * *
15087915 GGTGCAACATGAGGACTTCCCAAGAAACCGCCTATCCTAGTACGATTCTCG-CCAAG-AGCGCTT
64 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-CGCTT
* * * * * * * *
15087978 AACTGCGGAGTTTTGTTGAGATCTGATGCATTAGTGGTGGTATGATCGCACCAGTAAACTCTTGC
128 AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC
* * *
15088043 GCAATAT-TTTATATAAAGGCTGCCCCTTATTGCACATGCGCCTCGAATTTGAATGCAAATTCGA
193 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* ** *
15088107 CCAAATAACGTTTCAAATTATTTATTTCGCAAAACAAAAATAAGT
258 CCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * * * *
15088152 AATTACTTACACGGTGTTCAGAAAATGCAACTAAAAAACAAATTTATATGAAATAAAATGGAAGA
1 AATTAGTTACACGATGTTTAGAAAATGCAACT-AAAAA-AAATTTATATGAAATAAAATGGGAGG
* * * * *
15088217 GGTGCAACACGAGGACTTCCCAAGAGGTTACCCATTCTAGTACTACTCACCCCCAAGCACGCTTA
64 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * * *** * * *
15088282 GCTGCAGAGTTCTGATTGGATTTAGTGC-TTAAGTGCTGGTACGATCGCACCCATGAACTCTTGC
129 ACTGCGGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTTGC
* * *
15088346 GCAATCTATTTATATAAAGGCTGCCCCTTATCCCACTTGCGCCTCGAATTTGATTGGAAATTCG-
193 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* *
15088410 CCAAAATAACGTTTCAAGTGATTTCTTTCGCAAAACGCAAATAACT
258 CC-AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* *** * *
15088456 AATTAGTTACACGATGCTTAGAAAATGCAACT-AAAATTTTTTTTCCACGAAATAAAAT-GG-GG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTAT--ATGAAATAAAATGGGAGG
* * * * * *
15088518 GGTTCAAGACGAGGACTT--CAGATAGGTCACCCATCCTAGTACTACTCTCTCCCGAGCATGCTT
64 GGTGCAACACGAGGACTTCCCAG-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
* * * * * * * *
15088581 AACTTCAGAGTTTTGATGGGATCCGGTGCATTAGTGCTGATATCATCGCACCTGTCAAGTGTTGC
128 AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC
* * * * ** *
15088646 GCAGTCTCTTTATATAAAGGCTACCCCTTATCGTACTTATGCCTCGAATTTGATTGCAAATTCGA
193 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * * * *
15088711 CAAAATAACATTTGAAATGATTTCTTTCGCAAAACACAAATAACT
258 CCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
*** * ** *
15088756 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAATTGTTTTCTACAAAATAAAATGAGAGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAA-AAATTTATATGAAATAAAATGGGAGGG
* * * * * * * *
15088821 GTGCAACACGAGGACTTTCTAAGAAGTCGCCCATCCTAGTACGACTATCGCCCATG-AGCGCTTA
65 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-CGCTTA
* *
15088885 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCGGGTATGATCGCACCCGTCAACTCTTGTG
129 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * *
15088950 CAATCTATTTATATAAAGGCT-ACCCTTATAGCACTTGCGCCTCGAATTTGAATGCAGATTCGAC
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* *
15089014 CAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGT
259 CAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
15089058 AATTACTTACACGATGTTTGGAAAATGCAACTAAAAAACAAATTTTTATGAAATAAAATGGG-GG
1 AATTAGTTACACGATGTTTAGAAAATGCAACT-AAAAA-AAATTTATATGAAATAAAATGGGAGG
* * * * * *
15089122 GGTGTAACACGTGGACTTCCCA-AAGGGTCACCCATCCTAGTACTGCTCTCTCCCAAGCACACTT
64 GGTGCAACACGAGGACTTCCCAGGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
* * ** * * *
15089186 AACTGCGAAGTTCTGATTGGATCTAGTGC-TTAAGTGTTGGTATGATTGCACCCATCAACTCTTG
128 AACTGCGGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTTG
* * * * * ** *
15089250 CGCAATCTATTTATATAAACGCAGCCCCTTATCGCACTTGTGACTCGAATTTGATTATAAACTCG
192 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCG
* * *
15089315 ACCAAAGAACGTTTCAAATGATTTCTTTCGCAAAACGTAAATAACT
257 ACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* ***** * * *
15089361 AATTAGTTATACGATGTTTAGAAAATGCAACTAAATTTTTTTTCTACGAAATAAAATGGGAAGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * ** *** *
15089426 TGAAAGACGATGACTTCCCAAGAGGTCATCCATCCTAGTACTACTCTTTCTTTAGCGCGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * ** *
15089491 TGCAGAGTTCTGATGTGATCCGGTGCATTAGTGCTGATATGATTTCACCCGTCAAGTCTTGCGCA
131 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * * *
15089556 ATCTCTTTATATAAAGGGTTCCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCA
196 ATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * *
15089621 AATAACGTTTCAAATTCA-TTATTTCGCAAAATGCAAATAAGT
261 AATAACGTTTCAAA-TGATTTATTTCGCAAAACGCAAATAACT
* * * * *
15089663 AATTAGTTACACGATGTTTTGAAAATACAACTAAAAAACATTTATATGAAATAAAATAGGAGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * * *
15089728 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCGTAGTACTATTCACTCCCAAGCACACTTAAT
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * * * *
15089793 TGTGGAGTTCTGAT-GGATTCGGTG-ATTAAGTGCTGGTATGGTCGCTCCCTTCAACTCTTGTGT
131 TGCGGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * * *
15089856 TATCTATTTTTATAAAGGCTTCCCCTTATCGCACTTGCGCCTCGAATTTGACTTCAAATTCGACC
195 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * * * *
15089921 AAAAAACATTTTAAATGATTTATTTCACAAAACGCAGATAACT
260 AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* *** *
15089964 AATTAGTTACACGATGTTTAGAAAATGCATCTAAAAATTGTTTTTCTATGAAATAAAATGGGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAA--AAATTTATATGAAATAAAATGGGAGG
* * * * * * * *
15090029 AGTGCAACATGAGGACTTCCAAAGAAGTCGCCCATCCTAGTACGACTCTCGTCCATGAG-A-GCT
64 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA--AGCACGCT
* * *
15090092 TAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGATCAG-ACCCGTTAACACTT
127 TAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC-GCACCCGTCAACTCTT
* * * * * * *
15090156 GCGGAATCTATTTATATAAAGGTTGCCCTTTATCGCGCTTG-GACCTCGAATTAT-ATTCCGAAT
191 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCG-CCTCGAATT-TGAATGCAAAT
* * * * *
15090219 TTGACCCAATAACATTTCAAAAGA-TTACTTTCGCAAAATGCAAATAACT
254 TCGACCAAATAACGTTTCAAATGATTTA-TTTCGCAAAACGCAAATAACT
* * *
15090268 AATCT-GTTACAAGATGTTTAGAAAATGTAAC-AAAACAAAAGTTTATAAGAAAT-AAATCGGGA
1 AAT-TAGTTACACGATGTTTAGAAAATGCAACTAAAA-AAAA-TTTATATGAAATAAAAT-GGGA
* * *
15090330 GTGGATG-AACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCGCAAGCACTC
62 G-GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * * * * * * * * * ** * *
15090394 TTAACAGCAGAGTTCTAATGGAATCCGATGAATTAATGCTAGTTTGATTGCAGTCATCAACTGTT
126 TTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
* *
15090459 GCGTAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTCCGCCTCGAATTTGAATGCAAATTC
191 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTC
* * *
15090524 GACCAAATAAAGTTTCAAATAATTTATGTT-GCAAAACGCAAATAACA
256 GACCAAATAACGTTTCAAATGATTTAT-TTCGCAAAACGCAAATAACT
* ** * * * * *
15090571 AATTAGTTACACCACT-TGGAGAATATGAAACTAAAAAAATATTTATATGAAATAAATTTGGTGG
1 AATTAGTTACACGA-TGTTTAGAAAATGCAACTAAAAAAA-ATTTATATGAAATAAAATGGGAGG
* * ** * *
15090635 GGTTCAACACGAGGACTTCCTAAAAGGTCACTCATCCTAGTACTACTCTCGCCTAAGCACGCTTA
64 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * * * *
15090700 ACTGCGGAGTTCTGATGGGATTCGATGCATTAATGCTGATATGATCGCACCGGTCAACTCTTGCG
129 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * * *
15090765 CAATATATTTATATAAAGGCTGCCACTTAAT-GCACTTGCGCCTCGAATCTGAATGCAACTTCGA
194 CAATCTATTTATATAAAGGCTGCCCCTT-ATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * *
15090829 CTAAATAATGTTTCAAATGATTTATTTCGCAGAACGCAAATAACT
258 CCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* *
15090874 AATTAGTTACACGATTTTTAGAAAATGCAACT-ACAAAAATTTATATGAAATAAAATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * **
15090938 TGCAACACGAAGACTTCCCAAGAGGTTACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTTGC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * *
15091003 TGCGGAGTTCTAATGGGATCCGGTACATTAGTGCTGGTATGATCGCACCCTTAAACTCTTGCGCA
131 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* ** * * * * *
15091068 ATGTATTTACGTAAACGCTGCCCCTCATCGCACTTGCGCCTTGAATTTGAATGCAAATTCAAGCA
196 ATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * *
15091133 AATAACGTTTCAAATAATTTAATTCGCAAAACGGAAATAACT
261 AATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * * * * * *
15091175 AATTAGTTACGCCACGTTGAGAAAATGCAAC-AAAAAAATAGTTAAATGAAATAAATTGGGAGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAA-ATTTATATGAAATAAAATGGGAGGG
* ** * * * *
15091239 GTGCAACACGAGAACTTCCCATAAGATCCCCCATCCTAGTACTACTCTCGCCCCAGCACGTTTAA
65 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * ** * ** *
15091304 CTACAGAGTTCTGATGGGCTCCGGTGCATTAGTGCCAGTATGATAGCACGAGTCAA-TACTTGCA
130 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT-CTTGCG
* * * *
15091368 CAATCTATTTATATAAAGGCTGCCCCTAATCGCACTTGCGCATCGAATTTGAATACAAATTCGGC
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
*
15091433 CAAATAACGTTTCAAATGATTTATTTCG-AAGAACGCCAATAACT
259 CAAATAACGTTTCAAATGATTTATTTCGCAA-AACGCAAATAACT
* * * * *
15091477 AATTAGTTAAATGATATTTAGAAAATCCAACTAAAAAAAA--T-TATGAAATAAAATGGAAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * *
15091539 TGCAACATGATGACTTCCCAAGAGGTCACCCATCCTAGTACTATTCTCGCCCAAGCAAGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * *
15091604 TGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACACGTCAACTCTTGCGC
131 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
15091668 CTCGAATTTG
Statistics
Matches: 7064, Mismatches: 1344, Indels: 390
0.80 0.15 0.04
Matches are distributed among these distances:
282 2 0.00
283 151 0.02
284 1 0.00
285 17 0.00
286 189 0.03
287 88 0.01
288 11 0.00
289 3 0.00
290 1 0.00
291 1 0.00
292 4 0.00
293 7 0.00
294 88 0.01
295 60 0.01
296 91 0.01
297 37 0.01
298 71 0.01
299 316 0.04
300 999 0.14
301 1478 0.21
302 1264 0.18
303 1149 0.16
304 775 0.11
305 191 0.03
306 70 0.01
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29
Consensus pattern (302 bp):
AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
ATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
AATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
Found at i:15084182 original size:19 final size:19
Alignment explanation
Indices: 15084158--15084198 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
15084148 TTGTCAACTA
15084158 TTGCACATGTGCCTCAAAT
1 TTGCACATGTGCCTCAAAT
*
15084177 TTGCACATGTGCCTCGAAT
1 TTGCACATGTGCCTCAAAT
15084196 TTG
1 TTG
15084199 ATTGCAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (19 bp):
TTGCACATGTGCCTCAAAT
Found at i:15086655 original size:303 final size:302
Alignment explanation
Indices: 15084187--15091667 Score: 7560
Period size: 302 Copynumber: 24.9 Consensus size: 302
15084177 TTGCACATGT
* * * *
15084187 GCCTCGAATTTGATTGCAAATTTGACCAAATAACGTTTCAAATGATTTGTTTCGCCAAAA-GAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCG-CAAAACGCAA
* * *
15084251 ATAACTAATTAGTTACACGATGTTTAGAAAATACAACTAAAAAAA--TGTATATGAAATAAAATA
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATG
* * * * * *
15084314 GGAGGGGTGCAACAAGAGGACGTCACAGGAGGTCACCCATCCTAGTAGTACTCTCCCCCAAGCAC
129 GGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * * * * ** *
15084379 TCTTAACTGCGGAGTTCTGATGGGGTCCAGTGAATTAGTGATGGTATGATCGCACCTATAAACTC
194 GCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
* * *
15084444 GTGCGCAATCTATTTATATAAAGGCTACCCTTTATCGCACTTGC
259 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * *
15084488 GCCTCGAATTTGATTGCAAATTCAACCAAATAACGTTTCAAATGATTTCCTTT-GTAAAACGCAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTT-ATTTCGCAAAACGCAA
* *
15084552 ATAAGTAATTA-TATACACGGTGTTTAGAAAATGCAACTAAAAAAA--TTTATATGAAATAAAAT
65 ATAACTAATTAGT-TACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAAT
* * * * * * * * * *
15084614 GGGA-GGATACAGCACGAGGACTTCCTAGGAGGTCACCCATCCTAATACTACCCTCACTCAAGCT
128 GGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * * * * *
15084678 CGCTTAATTGTAGAGTGT-TAATGGGATCCGCTGCATTAGTGCTAGTATGATCGCATCCGTCAGC
193 CGCTTAACTGCAGAGT-TCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
* * * *
15084742 TCTGGCACAA-CTATTTATATAAAGGCTGCCTCTTATCACACTTGC
257 TCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * ** *
15084787 ACCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTGTTTAACAAAAAGCAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * * * *
15084852 TTATTAATCAGTTGCACGTTGTTTAGAAAATACAACTAAAAAAA--TTTATATGAAATAAAATGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATGG
* * * * *
15084915 GAGGGGTGCAACACGAGGACATCCCAGGAGGTCAACCATCCTAGTACTACTTTCGCCCAAGCATG
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* * * * * * *
15084980 CTTTACAGCAGAGTTCTGATGGGACCCAGTGCATTAGTGCTGGTATGATCACACCCGTAAACTTT
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* * * * *
15085045 TCCGCAATCAATTTATATAGAA-GCTACCCCATATCGTACTTGC
260 TGCGCAATCTATTTATATA-AAGGCTGCCCCTTATCGCACTTGC
* * * *
15085088 GCCTCGAATTTGAATGCAAATTCGACCAAATAA-GTTTAAAATGATTTATTTCACAAAATGAAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * * ***
15085152 TACCTAATTATTTACACGATGTTTAGAAAAGGCAACTAAATTTTTTTTATATGAAATAAAATGGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGGG
* * * * * *
15085217 AGGGGTGCAACATGAAGACTTCCTAGGAGGTCACCCATCCTACTACTACTCTCACCCAAGCACGC
131 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * * ** *
15085282 TT-ACCGAAGGAGTTTTGATGGGATCTAGTGCATTA-TAGCTGGTATGATCGCACCTGTCAACT-
196 TTAACTGCA-GAGTTCTGATGGGATCCGGTGCATTAGT-GCTGGTATGATCGCACCCGTCAACTC
15085344 TGTGCGCAATCTATTTATATAAAGGCTG-CCCTTATCGCACTTGC
259 T-TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * *
15085388 GCCTCGAATTTGATTACAAATTCGACCAAATAACGTTGCAAGTGATTTGTTTCGCTAAAA-GTAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGC-AAAACGCAA
* ** *
15085452 ATAACTAATTAGTTACACGATGTTTAGAAAAT---ATAAAAAAA--GGTATATGAAATAAAATGT
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGG
* * * * * * * *
15085512 GAGGGGTGCAACATGAGGACATCCCAGGAGGTCATCCATCCTAGTAGTACTCTTGCCCAATCACT
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
** * * * * * * *
15085577 CTTAACTGTGGAGTTCTGA-GGGGTCCAGTGAATTAG-GTTGGTATGATCGCACCTGTAAACTCG
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* * * * * * *
15085640 AGCGTAATCGATTTAAATAAAGGCTTCCCTTTATCGTACTTGC
260 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * * * *
15085683 ACCTCAAATTTGATTGTAAATTTGACCAAA-AACATTTCAAATGATTTCCTTT-GCAAAACACAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTT-ATTTCGCAAAACGCAA
* * *
15085746 ATAAGC-AATTA-TATACACGGTATTTAGAAAATGCAACTAAAAAAA-ATTTATATGAAATAAAA
65 ATAA-CTAATTAGT-TACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAA
* * * * * * ** **
15085808 TGGGA-GGATGTAGCACGAGGACTTCCCAGGAGATCACCCAACCTAGTACTAC-CTTTACTAAAG
127 TGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTC-TCGCCCAAG
* * * * * * * *
15085871 CTCGCTTAACTGTAGAGTGCTAATGGGACCCGGTGCTTTAGTGCTAGTATGATCGCATCCGTCAA
191 CACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * * *
15085936 CTCTAGCGCAATCTATTTATATAAATGCTGCCCCTTATTGCACTTGT
256 CTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * *
15085983 GCCTCGAATTTGAATGTAAATTCGACCAAATAATGTTTCAAATGATTTGTTTCGCAAAAAGCAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * *
15086048 AAACTAATTAGTTACACGATGTTTAGAAAATACAGCTAAAAAAA--ATTATATGAAATAAAATGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATGG
* * * *
15086111 GAGGAGTGCAACACGAGGA-TATCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAGGCAC
130 GAGGGGTGCAACACGAGGACT-TCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * * * * * * *
15086175 ACTTTACAGCGGTGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATTATCGCACCCGTAAACTT
194 GCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
* * * * *
15086240 TTGCACAAACAATTTATATAAAGGCTGCCCCTTATCGTACTTGT
259 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * **
15086284 GCCTCGAATTTGAATGCAAATTCGACCAAATAATGTTTCAAATGATTTACTTCGCAAAACAAAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * *
15086349 TAACTAATTAGTTCCACGATGTTTAGAAAATACAACAAAAAGAATTTTTTTATGAAATAAAATGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAA-AATTTTTATATGAAATAAAATGG
* * * **
15086414 GAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTCCTACTTTTACCCAAGCACG
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* * * * * * *
15086479 CTTAGCTTCAGAGTTCTGACGGGATTCGGTGCATTAGTGCTAGTATGGTCGCACTCGTCAACTCT
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* * *
15086544 T-CTGTAATCTATATATATAAAGGCTACCCCTTATCGCACTTGC
260 TGC-GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * *
15086587 ACCTCGAATTTGATTGCAAATTCGACCAAATAACATTTGAAATGATTTCTTTC-CAAAAACGCAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGC-AAAACGCAA
* ** * **
15086651 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAATTAAAAATTGTTTTTTTACAAAATAAAAT
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAA-CAAAAA-AATTTTTATATGAAATAAAAT
* * * * ** **
15086716 GGGAGGGGTGCAACACGAGGACTTTCTAACAAGTTGCCCATCCTAGTACGGCTCTCGCCCATA--
128 GGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA-AGC
* * * * * *
15086779 AGCGCTTAACTGCGGAGTTCTGATGGGATCTGGCGCATTAGTGCGGGTACGATCACACCCGTCAA
192 A-CGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* *
15086844 CTCTTGCGCAATCTATTTATATAAAGGCTGCTCGTTATCGCACTTGC
256 CTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* ** * *
15086891 GCCTCGAATTTGAATGTAAATTCGACCAAATAACGTTTCAAATTCTTTATTTCGAAAAACGCGAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * * **
15086956 TAAGTAATTACTTACACAATGTTTGGAAAATGCAACTAAAAAACAAATTTATATGAAATAAAATG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAA-ATTTTTATATGAAATAAAATG
* * * **
15087021 GGAGGGGTGCAACACGTGGACTTCCCAA-AGGGTCACCCAACCTAGTACTGCTCTTTCCCAAGCA
129 GGAGGGGTGCAACACGAGGACTTCCCAAGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * * * ** * *
15087085 AGCTTAATTGCGGAGTTTTGATTGGATCTAGTGC-TTAAGTGCGGGTATGATCGCACCCATCAAC
193 CGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAAC
* *
15087149 TATTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGTACTTGC
257 TCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * *
15087195 GCCTCAAATTTGACTGGAAATTCGACCAAAGAACGTTTCAAATGATTTCTTTCGCAAAACACAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * ** * *
15087260 TAACTAATTAGTTACATGATGTTTAGAAAATGCAACTAAAATTTTTTTCTACGAAATAAAATGGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGGG
* * * * *
15087325 AGGGGTGCAAGACGAGGACTTCCCAAGAGGTCACCCACCCAAATACTACTCTC-TCCAGAGCACG
131 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA-AGCACG
* * * * *
15087389 CTTAACTGCAGAGTTCTAATAGGATCCGGTGCATTATTGCTGGTATGATCGCTCTCGTCAACTCT
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* * * * * * *
15087454 TTCACAATCTATTAATATAAAGGTTGCCCCTTATCGTACATGT
260 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * *
15087497 GCCTCGAATTTGAATACAAATTCGACCATATAATGTTTCAAATTATTTATTTCGGAAAACACAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * *
15087562 TAAGTAATTAGTTACACGATGTTTGGAAAATGCAACTAAAAAAA--ATTATATGAAATAAAATGA
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATGG
* * * * * * * *
15087625 GAGAGGTGCAACATGAGGACTTCCTAAGGGGTCACCCATCTTAGTACTACTCACTCCCAACCACG
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* * *
15087690 CTTAACTGC---G----G-T--G---C--T---TAAGTGCTGGTATGGTCGCACCCGTCAACTAT
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
** * * * **
15087737 TGCATAATCTATTTAAATAATGGATGCCCCTTATCGCACTTAT
260 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * *
15087780 GCCTCCACTTT-AATTGCAAATTCGACCAAATAATC-TTTCAAATGATTTGTTTCGCAGAACGCA
1 GCCTCGAATTTGAA-TGCAAATTCGACCAAATAA-CGTTTCAAATGATTTATTTCGCAAAACGCA
** * *
15087843 AATAACTAATTAGTTACACGATGTTTAGAAAATGCAACTAAAAATTGTTTTTCTACGAAATAAAA
64 AATAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAA-AATTTTTATATGAAATAAAA
* * *** * * * *
15087908 CGGGAGGGGTGCAACATGAGGACTTCCCAAGAAACCGCCTATCCTAGTACGATTCTCG-CCAAG-
127 TGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * * * * * *
15087971 AGCGCTTAACTGCGGAGTTTTGTTGAGATCTGATGCATTAGTGGTGGTATGATCGCACCAGTAAA
192 A-CGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * *
15088036 CTCTTGCGCAATAT-TTTATATAAAGGCTGCCCCTTATTGCACATGC
256 CTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* **
15088082 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACAAAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * * **
15088147 TAAGTAATTACTTACACGGTGTTCAGAAAATGCAACTAAAAAACAAATTTATATGAAATAAAATG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAA-ATTTTTATATGAAATAAAATG
* * * * * *
15088212 GAAGAGGTGCAACACGAGGACTTCCCAAGAGGTTACCCATTCTAGTACTACTCACCCCCAAGCAC
129 GGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * *** * * *
15088277 GCTTAGCTGCAGAGTTCTGATTGGATTTAGTGC-TTAAGTGCTGGTACGATCGCACCCATGAACT
194 GCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACT
*
15088341 CTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCCCACTTGC
258 CTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * *
15088386 GCCTCGAATTTGATTGGAAATTCG-CCAAAATAACGTTTCAAGTGATTTCTTTCGCAAAACGCAA
1 GCCTCGAATTTGAATGCAAATTCGACC-AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAA
* * * * *
15088450 ATAACTAATTAGTTACACGATGCTTAGAAAATGCAAC-TAAAATTTTTTTTCCACGAAATAAAAT
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTAT--ATGAAATAAAAT
* * * * *
15088514 -GG-GGGGTTCAAGACGAGGACTT--CAGATAGGTCACCCATCCTAGTACTACTCTCTCCCGAGC
128 GGGAGGGGTGCAACACGAGGACTTCCCA-AGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * * * *
15088575 ATGCTTAACTTCAGAGTTTTGATGGGATCCGGTGCATTAGTGCTGATATCATCGCACCTGTCAAG
192 ACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
* * * * * **
15088640 TGTTGCGCAGTCTCTTTATATAAAGGCTACCCCTTATCGTACTTAT
257 TCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * *
15088686 GCCTCGAATTTGATTGCAAATTCGACAAAATAACATTTGAAATGATTTCTTTCGCAAAACACAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * ** *
15088751 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACTAAAAATTGTTTTCTACAAAATAAAATGA
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAAT-TTTTATATGAAATAAAATGG
* * * * * * *
15088816 GAGGGGTGCAACACGAGGACTTTCTAAGAAGTCGCCCATCCTAGTACGACTATCGCCCATG-AGC
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-C
* *
15088880 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCGGGTATGATCGCACCCGTCAACTC
194 GCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
* * *
15088945 TTGTGCAATCTATTTATATAAAGGCT-ACCCTTATAGCACTTGC
259 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* *
15088988 GCCTCGAATTTGAATGCAGATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * *
15089053 TAAGTAATTACTTACACGATGTTTGGAAAATGCAACTAAAAAACAAATTTT-TATGAAATAAAAT
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC--AAAAA-AATTTTTATATGAAATAAAAT
* * * *
15089117 GGG-GGGGTGTAACACGTGGACTTCCCAA-AGGGTCACCCATCCTAGTACTGCTCTCTCCCAAGC
128 GGGAGGGGTGCAACACGAGGACTTCCCAAGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * ** * * *
15089180 ACACTTAACTGC-GAAGTTCTGATTGGATCTAGTGC-TTAAGTGTTGGTATGATTGCACCCATCA
192 ACGCTTAACTGCAG-AGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCA
* * *
15089243 ACTCTTGCGCAATCTATTTATATAAACGCAGCCCCTTATCGCACTTGT
255 ACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * ** * * * *
15089291 GACTCGAATTTGATTATAAACTCGACCAAAGAACGTTTCAAATGATTTCTTTCGCAAAACGTAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * *** * *
15089356 TAACTAATTAGTTATACGATGTTTAGAAAATGCAACTAAATTTTTTTTCTACGAAATAAAATGGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGGG
* * * * * ** *** *
15089421 AAGGGTGAAAGACGATGACTTCCCAAGAGGTCATCCATCCTAGTACTACTCTTTCTTTAGCGCGC
131 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * ** *
15089486 TTAACTGCAGAGTTCTGATGTGATCCGGTGCATTAGTGCTGATATGATTTCACCCGTCAAGTCTT
196 TTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
* * *
15089551 GCGCAATCTCTTTATATAAAGGGTTCCCCTTATCGCACTTGC
261 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * *
15089593 ACCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTCA-TTATTTCGCAAAATGCAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAA-TGATTTATTTCGCAAAACGCAA
* * * * ** *
15089657 ATAAGTAATTAGTTACACGATGTTTTGAAAATACAACTAAAAAACATTTATATGAAATAAAATAG
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGG
* * * * * *
15089722 GAGAGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCGTAGTACTATTCACTCCCAAGCACA
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* ** * * * *
15089787 CTTAATTGTGGAGTTCTGAT-GGATTCGGTG-ATTAAGTGCTGGTATGGTCGCTCCCTTCAACTC
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTC
* ** * *
15089850 TTGTGTTATCTATTTTTATAAAGGCTTCCCCTTATCGCACTTGC
259 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * * *
15089894 GCCTCGAATTTGACTTCAAATTCGACCAAAAAACATTTTAAATGATTTATTTCACAAAACGCAGA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* ** *
15089959 TAACTAATTAGTTACACGATGTTTAGAAAATGCATCTAAAAATTGTTTTTCTATGAAATAAAATG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAA-AATTTTTATATGAAATAAAATG
* * * * * * *
15090024 GGAGGAGTGCAACATGAGGACTTCCAAAGAAGTCGCCCATCCTAGTACGACTCTCGTCCATGAG-
129 GGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA--AGC
* * *
15090088 A-GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGATCAG-ACCCGTTAA
192 ACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC-GCACCCGTCAA
* * * * *
15090151 CACTTGCGGAATCTATTTATATAAAGGTTGCCCTTTATCGCGCTTG-
256 CTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * * * *
15090197 GACCTCGAATTAT-ATTCCGAATTTGACCCAATAACATTTCAAAAGA-TTACTTTCGCAAAATGC
1 G-CCTCGAATT-TGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTA-TTTCGCAAAACGC
* * ** *
15090260 AAATAACTAATCT-GTTACAAGATGTTTAGAAAATGTAACAAAACAAAAGTTTATAAGAAAT-AA
63 AAATAACTAAT-TAGTTACACGATGTTTAGAAAATGCAACAAAA-AAATTTTTATATGAAATAAA
* * *
15090323 ATCGGGAGTGGATG-AACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCGCA
126 AT-GGGAG-GGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * * * * * * * * * ** *
15090387 AGCACTCTTAACAGCAGAGTTCTAATGGAATCCGATGAATTAATGCTAGTTTGATTGCAGTCATC
189 AGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* * *
15090452 AACTGTTGCGTAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTCC
254 AACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* *
15090501 GCCTCGAATTTGAATGCAAATTCGACCAAATAAAGTTTCAAATAATTTATGTT-GCAAAACGCAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTAT-TTCGCAAAACGCAA
* * ** * * * *
15090565 ATAACAAATTAGTTACACCACT-TGGAGAATATGAAACTAAAAAAATATTTATATGAAATAAATT
65 ATAACTAATTAGTTACACGA-TGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAAT
* * * * * * *
15090629 TGGTGGGGTTCAACACGAGGACTTCCTAAAAGGTCACTCATCCTAGTACTACTCTCGCCTAAGCA
128 GGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * * * *
15090694 CGCTTAACTGCGGAGTTCTGATGGGATTCGATGCATTAATGCTGATATGATCGCACCGGTCAACT
193 CGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* *
15090759 CTTGCGCAATATATTTATATAAAGGCTGCCACTTAAT-GCACTTGC
258 CTTGCGCAATCTATTTATATAAAGGCTGCCCCTT-ATCGCACTTGC
* * * * *
15090804 GCCTCGAATCTGAATGCAACTTCGACTAAATAATGTTTCAAATGATTTATTTCGCAGAACGCAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* *
15090869 TAACTAATTAGTTACACGATTTTTAGAAAATGCAACTACAAAAA--TTTATATGAAATAAAATGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATGG
* *
15090932 GAGGGGTGCAACACGAAGACTTCCCAAGAGGTTACCCATCCTAGTACTACTCTCGCCCAAGCACG
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
** * * * * *
15090997 CTTTGCTGCGGAGTTCTAATGGGATCCGGTACATTAGTGCTGGTATGATCGCACCCTTAAACTCT
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* ** * *
15091062 TGCGCAATGTATTTACGTAAACGCTGCCCCTCATCGCACTTGC
260 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * *
15091105 GCCTTGAATTTGAATGCAAATTCAAGCAAATAACGTTTCAAATAATTTAATTCGCAAAACGGAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * * ** * *
15091170 TAACTAATTAGTTACGCCACGTTGAGAAAATGCAACAAAAAAATAGTTAAATGAAATAAATTGGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGGG
* * * *
15091235 AGGGGTGCAACACGAGAACTTCCCATA-AGATCCCCCATCCTAGTACTACTCTCGCCCCAGCACG
131 AGGGGTGCAACACGAGGACTTCCCA-AGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* * * ** * **
15091299 TTTAACTACAGAGTTCTGATGGGCTCCGGTGCATTAGTGCCAGTATGATAGCACGAGTCAA-TAC
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT-C
* *
15091363 TTGCACAATCTATTTATATAAAGGCTGCCCCTAATCGCACTTGC
259 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * *
15091407 GCATCGAATTTGAATACAAATTCGGCCAAATAACGTTTCAAATGATTTATTTCG-AAGAACGCCA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAA-AACGCAA
* * * * *
15091471 ATAACTAATTAGTTAAATGATATTTAGAAAATCCAACTAAAAAAA---AT-TATGAAATAAAATG
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATG
* * * * *
15091532 GAAGGGGTGCAACATGATGACTTCCCAAGAGGTCACCCATCCTAGTACTATTCTCGCCCAAGCAA
129 GGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * *
15091597 GCTTAACTGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACACGTCAACTC
194 GCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
15091662 TTGCGC
259 TTGCGC
15091668 CTCGAATTTG
Statistics
Matches: 5879, Mismatches: 1140, Indels: 324
0.80 0.16 0.04
Matches are distributed among these distances:
282 2 0.00
283 151 0.03
284 1 0.00
285 15 0.00
286 57 0.01
288 2 0.00
291 1 0.00
292 1 0.00
293 7 0.00
294 88 0.01
295 57 0.01
296 82 0.01
297 5 0.00
298 77 0.01
299 303 0.05
300 663 0.11
301 1177 0.20
302 1247 0.21
303 1148 0.20
304 783 0.13
305 12 0.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (302 bp):
GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGGG
AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
TTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
Found at i:15092067 original size:13 final size:13
Alignment explanation
Indices: 15092049--15092073 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15092039 ATTTAAAAAA
15092049 TGCAACACGAGGG
1 TGCAACACGAGGG
15092062 TGCAACACGAGG
1 TGCAACACGAGG
15092074 ATTTCCCAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.36, T:0.08
Consensus pattern (13 bp):
TGCAACACGAGGG
Found at i:15093090 original size:302 final size:302
Alignment explanation
Indices: 15092059--15093096 Score: 1326
Period size: 302 Copynumber: 3.4 Consensus size: 302
15092049 TGCAACACGA
* * * * *
15092059 GGGTGCAACACGAGGATTTCCCAGGAGGTGACCTATCCTAGTACTACTCTCACCCAATCACGCTT
1 GGGTGCAACACGAGGATATCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
* * * * *
15092124 AGCTGCGGAGTTCTAATGGGATACGGTGCACTAGTGCTGGTATGATTGCACGCGTCAACTCTTGC
66 AACTGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACCCGTCAACTCTTGC
* * * *
15092189 GCAATCTATTAACATAAA-GATCGCCCCTTATCGCACTTGTGCCTCAAATTTGAATGCAAATTCG
131 GCAATCTATTTATATAAAGGCT-GCCCCTTATCGCACTTGCGCCTCAAATTTGAATGCAAATTCG
* *
15092253 ACCAAATAACGTTTTAAATTATTTATTTTG-AAAATCACAAATAACTAATTAATTACACCACGTT
195 ACCAAATAACGTTTTAAATTATTTATTTTGCAAAA-CACAAATAACTAATTAGTTACACCACGTG
*
15092317 TAGAAAATGCAACTAAAAAAACTTTATCTGAAATAAAATGAGAG
259 TAGAAAATGCAACTAAAAAAACTTTATATGAAATAAAATGAGAG
** * **
15092361 GGAAGCAACACGA--ACACTGCCCAGGAGGTCACCCATTGTAG-ACTACTCTCGCCCAAGCACGC
1 GGGTGCAACACGAGGATA-T-CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * * * * *
15092423 -TAGACAGTAGAGTTCTGATGGGA-ACCG-GCACTCTAGTGCTGGTATGATCGCCCCCGTAAACT
64 TTA-ACTGCAGAGTTCTGATGGGATACGGTGCA-T-TAGTGCTGGTATGATTGCACCCGTCAACT
* * *
15092485 CTTGCGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCTTCCAATTTGAATGCAAA
126 CTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCAAATTTGAATGCAAA
* * * *
15092550 TTCGACCAAATAATGTTTCAAATAATTTATTTTGCAAAACCCAAAATAACTAATTAGTTACACCA
191 TTCGACCAAATAACGTTTTAAATTATTTATTTTGCAAAACAC-AAATAACTAATTAGTTACACCA
* * *
15092615 CGTGTAGAAAATACAACTAAAAAAACTTTTTACATGAAATAAAATGGGAG
255 CGTGTAGAAAATGCAACTAAAAAAAC--TTTATATGAAATAAAATGAGAG
* * * * * * *
15092665 GGGTGAAACACGAAGACT-TCCCAGAAGGTCACCCATCCAAGTACTACTTTCGCCTAAGCATGCT
1 GGGTGCAACACGAGGA-TATCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCT
* *
15092729 TAACTGCACG-TTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCT-CACCCGTCAACTCT
65 TAACTGCA-GAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGAT-TGCACCCGTCAACTCT
* * *
15092792 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTACACCTCGAATTTGAATGCAAATT
128 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCAAATTTGAATGCAAATT
* * * *
15092857 CGACCATATAACGTTTTAAATTATTTATTTCGCAGAACGCAAATAAC-ATATTAGTTACACCACG
193 CGACCAAATAACGTTTTAAATTATTTATTTTGCAAAACACAAATAACTA-ATTAGTTACACCACG
*
15092921 TGTAGAAAATGCAACTAAAAAAACTTTATATGAAATAAATTGAGAG
257 TGTAGAAAATGCAACTAAAAAAACTTTATATGAAATAAAATGAGAG
* * * *
15092967 GGGTGCGACACGAGGATATCCCAGGAGGTCACCCATCCTAGTACTACTGTCGCACAAGAACGCTT
1 GGGTGCAACACGAGGATATCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
*
15093032 AACTGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACACGTCAACTCTTGC
66 AACTGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACCCGTCAACTCTTGC
15093097 CCCTCGAATT
Statistics
Matches: 627, Mismatches: 86, Indels: 46
0.83 0.11 0.06
Matches are distributed among these distances:
299 3 0.00
300 6 0.01
301 152 0.24
302 209 0.33
303 1 0.00
304 92 0.15
305 154 0.25
306 7 0.01
307 3 0.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (302 bp):
GGGTGCAACACGAGGATATCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
AACTGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACCCGTCAACTCTTGC
GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCAAATTTGAATGCAAATTCGA
CCAAATAACGTTTTAAATTATTTATTTTGCAAAACACAAATAACTAATTAGTTACACCACGTGTA
GAAAATGCAACTAAAAAAACTTTATATGAAATAAAATGAGAG
Found at i:15093834 original size:168 final size:168
Alignment explanation
Indices: 15093549--15093875 Score: 437
Period size: 168 Copynumber: 1.9 Consensus size: 168
15093539 TAAAGGTCAC
*
15093549 CCATCCTAGTACTACTCTCGTCCAAGCACGCTTAACTGCAGAGTTTTGATGGGATCAGGTGCATT
1 CCATCCTAGTACAACTCTCGTCCAAGCACGCTTAACTGCAGAGTTTTGATGGGATCAGGTGCATT
* ** *
15093614 AGTGCTAGTATGATCGCACCCATCAACTCTTGCGCAATCTAATTTCATAAAGGCTACCTTTTATC
66 AGAGCTAGTATGATCGCACCCATCAACTCTTGCGCAATCTAATTTCATAAAGGCTACCCCTTATA
*
15093679 GCCCTTGCGCCTCAAATTTGAATGCAAATTCGACCAAA
131 GCACTTGCGCCTCAAATTTGAATGCAAATTCGACCAAA
* * *
15093717 CCATCCTAGTACAACTCTCG-CCTAAGCACGCTTAGCTGCGGAGTTTTGATGGGATC-CGTGGCA
1 CCATCCTAGTACAACTCTCGTCC-AAGCACGCTTAACTGCAGAGTTTTGATGGGATCAGGT-GCA
* * * *
15093780 TTAGAGCTGGTATGATCGC-CCGCGTCAACTCTTGCGTAATCT-ATTTATATAAAGGCTACCCCT
64 TTAGAGCTAGTATGATCGCACC-CATCAACTCTTGCGCAATCTAATTT-CATAAAGGCTACCCCT
* ** *
15093843 TATAGCACTTGCGCTTTGAGTTTGAATGCAAAT
127 TATAGCACTTGCGCCTCAAATTTGAATGCAAAT
15093876 AACTAATTAG
Statistics
Matches: 138, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
167 10 0.07
168 128 0.93
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (168 bp):
CCATCCTAGTACAACTCTCGTCCAAGCACGCTTAACTGCAGAGTTTTGATGGGATCAGGTGCATT
AGAGCTAGTATGATCGCACCCATCAACTCTTGCGCAATCTAATTTCATAAAGGCTACCCCTTATA
GCACTTGCGCCTCAAATTTGAATGCAAATTCGACCAAA
Found at i:15094461 original size:300 final size:300
Alignment explanation
Indices: 15093870--15097130 Score: 3716
Period size: 302 Copynumber: 10.8 Consensus size: 300
15093860 GAGTTTGAAT
* *
15093870 GCAAATAACTAATTAGTTACACCACGT-TGAGAAAATGCAACTCAACAAAATTATATGAAATAAA
1 GCAAATAACTAATTAGTTACACCACGTGT-AGAAAATGCAACTAAAAAAAATTATATGAAATAAA
* * * *
15093934 ATGGGAGGGCTGCAACACGAGGACTTCCCAGGAGTTCACCCAACCTAGTACTACTCTCACCCAAG
65 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
* * * * * * *
15093999 CAAGCATAACTACGGAGTTCAGATGGGATACGGTGTATTAGTGCTGGTATGATTGCACCCGTCAA
130 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * * *
15094064 CTCTTTCGCAACCTAATTATATAAAGGTTGCCCCTTATCGCACTTGCGCCTC-AGATTTGAATGC
195 CTCTTGCGCAATCTATTTATATAAA-GTCGCCCCTTATCGCACTTGCGCCTCGA-ATTTGAATGC
* * * *
15094128 AAATTCGATCAAATAACATTTCGAATGATTTATTTCGCAAAAC
258 AAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * * * * *
15094171 GCCAATAACTAATTAGTTACACGATGTTTAGACAATGCGACT-AAAAAAATTATATAAAATAAAA
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAATTATATGAAATAAAA
* * * *
15094235 TGGGAGGGGTGCAACATGAGGATTTCCCAGGAGGTGACCTATCCTAGTACTACTCTCAG-CCAAG
66 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC-GCCCAAG
* * * * * *
15094299 CACGCTTAGCTGCGGAGTTCTAATGGGATACGGTGCACTAGTGCTGGTATGATTGCACGCGTCAA
130 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * * *
15094364 CTCTTGGGCAATCTATTTACATAAAGATCGCCCCTTATCGCACTTGTGCCTCAAATTTGAATGCA
195 CTCTTGCGCAATCTATTTATATAAAG-TCGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCA
* *
15094429 AATTCGACCAAATAACGTTTTAAATTATTTATTTCGAAAAAC
259 AATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * * *
15094471 ACAAATAACTAATTAGTTACACCACGTTTAGAAAATACAACTAAAAAAAACTTTATCTAAAATAA
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAA--TTATATGAAATAA
* ** ** * *
15094536 AATGAGAGGGAAGCAACACGAACACTTCCCAGGAGGCCATCCATCCTAG-ACTACTCTCGCCCAA
64 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * ** * * *
15094600 GCACGCTTGACAGTAGAGTTCTGATGGGATAC-G-ACACTCTAGTGCTGGTATGATTGCACCCGT
129 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCA-T-TAGTGCTGGTATGATCGCACCCGT
* * * *
15094663 AAACTCTTGCGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCTTCCAATTTGAAT
192 CAACTCTTGCGCAATCTATTTATATAAAGTC-GCCCCTTATCGCACTTGCGCCTCGAATTTGAAT
* * *
15094728 GCAAATTCGACCAAATAATGTTTCAAATAATTTATTTTGCAAAAC
256 GCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * *
15094773 CCAAATAACTAATTAGTTACACCACGTGTAGAAAATACAACTAAAAAAACTTTTTACATGAAATA
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAA---ATTATATGAAATA
* * * * * *
15094838 AAATGGGAGGGGTGAAACACGAAGACTTCCCAGAAGGTCACCCATCCAAGTACTACTTTCGCCTA
63 AAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
*
15094903 AGCATGCTTAACTGC--ACGTTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
128 AGCACGCTTAACTGCGGA-G-TTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
15094966 TCAACTCTTGCGCAATCTATTTATATAAA-T-GCTGCCCTTATCGCACTTACGCCTTGAATTTCA
191 TCAACTCTTGCGCAATCTATTTATATAAAGTCGC--CCCTTATCGCACTTGCGCCTCGAATTTGA
** * *
15095029 ATG-AATATTATACCAAATAACATTTCAAATTATTTATTTCACAAAAC
254 ATGCAA-ATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* *
15095076 ACAAATAACTAATTAGTTACACCACGTGTTGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAA--TTATATGAAATAA
* * **** * * * * **
15095141 AAT--G-GGGGTGCAACACAAGCACCGGTCA--A-CTCTTGCGCAAT-CT-GTTTATATAAAGCT
64 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC--AC-CCATCCTAG--TA-CT-ACTCT
* * * * * * * *
15095198 TGCCCAAGCACGGTTAATTACGAAGTTCTGATGAGATCCGGTGCATTAGTGCTGGTCTAATCGCA
122 CGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA
* * *
15095263 CCCGTCAACTCTTGCGCAATCTATTTATATAAAGCTTGCCCCTTATCGCACTTGCGCATCCAATT
187 CCCGTCAACTCTTGCGCAATCTATTTATATAAAG-TCGCCCCTTATCGCACTTGCGCCTCGAATT
* *
15095328 TGAAGGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAAC
251 TGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * *
15095378 GCAAATAA-TGAATTAGTTACACCATGTGGAAAAAATACAACTAAAAAAAAACATTATATGAAAT
1 GCAAATAACT-AATTAGTTACACCACGTGTAGAAAATGCAACT--AAAAAAA-ATTATATGAAAT
* * * * * * *
15095442 ATAATGGGAGGGGTGCAACTCGAGGACTTCCCAGGAAGTTACCCATGCTAGTATTACTCTCGCAC
62 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCC
* * * * *
15095507 AGGCACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCATTAGTCCTGGTAAGTTCGCACCCGT
127 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * * * * *
15095572 CAACACTTGGGCAACCTATTTATATAAAGGCTGCCCCTTATTGCACTAGCGCCTCGAATTTGAAT
192 CAACTCTTGCGCAATCTATTTATATAAAGTC-GCCCCTTATCGCACTTGCGCCTCGAATTTGAAT
* * *
15095637 GCAAATTCGACCATATAACGTTTTAAATTATTTATTTCGCAGAAC
256 GCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* *
15095682 GCAAATAAC-ATATTAGTTA-ATCTACGTGTAGAAAATGCTACTAAAAGAAATACTTTATATGAA
1 GCAAATAACTA-ATTAGTTACA-CCACGTGTAGAAAATGCAACTAAAA-AAA-A--TTATATGAA
* * ** ** *
15095745 TTAAAATGGGAGGGGTGCAACACAAGGACTTCCCAAAAGGTTGCCCATCCTAGTACTATTCTCGC
60 ATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGC
* * * *
15095810 CGAAGCACGCTTGACTACGGAGTTCTGATGGGATCCGGTGCGTTAGTGCTGGTATGATCGCACCC
125 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* * * *
15095875 GTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCTCTTATCGCAGTTGCGCCTCGAATTTGA
190 GTCAACTCTTGCGCAATCTATTTATATAAAGTC-GCCCCTTATCGCACTTGCGCCTCGAATTTGA
* * * *
15095940 ATGCAAATTCGACCAAATATCGTTTCATATTATTTATTTAGCATAAC
254 ATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * *
15095987 GCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATAAA
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAA-ATTATATGAAATAAA
* **
15096052 ATTGGAGGGGTGCAACACGAGGACTTCCCAAAAGGTCACCCATCCTAGTACTACTCTCGCCCCAA
65 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG-CCCAA
* ** *
15096117 GCA--CTTAAACTGCGGAGTTCTGATGGGATCCGATGCATTAGTGCAAGTATGATCCCACCCGTC
129 GCACGCTT-AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* * * * * *
15096180 AACTCTTGTGCAAGCTATTCATATAAATGTTGCCCCTAATCGCAATTGCGCCTCGAATTTGAATG
193 AACTCTTGCGCAATCTATTTATATAAA-GTCGCCCCTTATCGCACTTGCGCCTCGAATTTGAATG
* * * *
15096245 CAAATTCGACCAAATATCATTTGAAATTATTTATTTCGCAAAAT
257 CAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * *
15096289 GCAAATAACGAATGAGTTACACCACGTGAAGAAAATGCAA-TTAAAAAAATTATATGAAATAAAA
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAATTATATGAAATAAAA
* * *
15096353 TGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAATACAACTCTCGCCCAAGC
66 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * *
15096418 ATGCTTAACTGAGGAGTTCTAACGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-TCGATCAA
131 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG-TCAA
* * * *
15096482 CTCTTGCGCAATCTATTCATATAAACGTTGCCTCTTATCGCACTTGCGCCTCGAATTTTAATGCA
195 CTCTTGCGCAATCTATTTATATAAA-GTCGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCA
* *
15096547 AATTCGACCAAATATCGATTCAAATTATTTATTTCGCAAAAC
259 AATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * ** * *
15096589 GCAAATAGCGAATGAGTTACACCTTGTGAAGAAAATGCAACTAAAAAAAATTATATGAAATAAAT
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAATTATATGAAATAAAA
* *
15096654 TGGGTGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCATGC
66 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* ** * * *
15096719 ACGCTTAACAGCGGAGTTCTGATCAGATCCGGTGCATTAATGCTGTTGTGATCGCACCCGTCAAC
131 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
* * * *
15096784 TCTTGCGCAACCTATTTATATAAAGGCTGCCCCTTATCGCCCTTGCGCCTCAAATTTGAATGCAA
196 TCTTGCGCAATCTATTTATATAAAGTC-GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAA
*
15096849 ATTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAAAC
260 ATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * *
15096890 GCAAATAACGAATTAGTTACACCACGTGGAGAAATTGCAACTAAAAAAACTTTATATGAAATAAA
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAA-ATTATATGAAATAAA
* * * * *
15096955 GTGGGAGCGGTGCAACAGGTGGACTTCCCTA-GAGGTCACCCCATCTTAGTACTACTCTCGCCCA
65 ATGGGAGGGGTGCAACACGAGGACTTCCC-AGGAGGTCA-CCCATCCTAGTACTACTCTCGCCCA
* * ** * * * * *
15097019 AGCACGCTTAACTGCAGAGTTCTGATGGAATCTAGTGTATTCGTTCTAGTATGATCGCACCCATC
128 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* *
15097084 AACTCTTGTGCAATCTATTTATATAAAGGCCGCCCCTTATCGCACTT
193 AACTCTTGCGCAATCTATTTATATAAA-GTCGCCCCTTATCGCACTT
15097131 TTTCCTCAAA
Statistics
Matches: 2521, Mismatches: 368, Indels: 140
0.83 0.12 0.05
Matches are distributed among these distances:
296 2 0.00
297 2 0.00
298 2 0.00
299 32 0.01
300 511 0.20
301 418 0.17
302 621 0.25
303 355 0.14
304 287 0.11
305 259 0.10
306 26 0.01
307 3 0.00
308 2 0.00
309 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (300 bp):
GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAATTATATGAAATAAAA
TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
TCTTGCGCAATCTATTTATATAAAGTCGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAA
TTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
Found at i:15095156 original size:602 final size:602
Alignment explanation
Indices: 15093870--15097130 Score: 3680
Period size: 602 Copynumber: 5.4 Consensus size: 602
15093860 GAGTTTGAAT
* *
15093870 GCAAATAACTAATTAGTTACACCACGT-TGAGAAAATGCAACTCAACAAAA--TTATATGAAATA
1 GCAAATAACTAATTAGTTACACCACGTGT-AGAAAATGCAACTAAAAAAAACTTTATATGAAATA
* * * * *
15093932 AAATGG-GAGGGCTGCAACACGAGGACTTCCCAGGAGTTCACCCAACCTAGTACTACTCTCACCC
65 AAATGGAGAGGG-TGCAACACGAAGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
* * * * * * *
15093996 AAGCAAGCATA-ACTACGGAGTTCAGATGGGATACGGTGTATTAGTGCTGGTATGATTGCACCCG
129 AAGCACGCTTACAGTAC-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * * **
15094060 TCAACTCTTTCGCAACCTAATTATATAAAGGTTGCCCCTTATCGCACTTGCGCCT-CAGATTTGA
193 TCAACTCTTGCGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCCTCCA-ATTTGA
* * * * * *
15094124 ATGCAAATTCGATCAAATAACATTTCGAATGATTTATTTCGCAAAACGCCAATAACTAATTAGTT
257 ATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACTAATTAGTT
* ** * * * *
15094189 ACACGATGTTTAGACAATGCGACT-AAAAAAATTATATAAAATAAAATGGGAGGGGTGCAACATG
322 ACACCATGTGGAGAAAATGCAACTAAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACG
* * * * *
15094253 AGGATTTCCCAGGAGGTGACCTATCCTAGTACTACTCTCAGCCAAGCACGCTTAGCTGCGGAGTT
387 AGGACTTCCCAGAAGGTCACCCATCCTAGTACTACTCTC-GCCAAGCACGCTTAACTGC-GAGTT
* * * * * * *
15094318 CTAATGGGATACGGTGCACTAGTGCTGGTATGATTGCACGCGTCAACTCTTGGGCAATCTATTTA
450 CTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTTA
* * * * *
15094383 CATAAA-GATCGCCCCTTATCGCACTTGTGCCTCAAATTTGAATGCAAATTCGACCAAATAACGT
515 TATAAAGGCT-GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACAT
* *
15094447 TTTAAATTATTTATTTCGAAAAAC
579 TTCAAATTATTTATTTCGCAAAAC
* * * * *
15094471 ACAAATAACTAATTAGTTACACCACGTTTAGAAAATACAACTAAAAAAAACTTTATCTAAAATAA
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * * * *
15094536 AAT-GAGAGGGAAGCAACACGAACACTTCCCAGGAGGCCATCCATCCTAG-ACTACTCTCGCCCA
66 AATGGAGAGGG-TGCAACACGAAGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * *
15094599 AGCACGCTTGACAGTA-GAGTTCTGATGGGATAC-G-ACACTCTAGTGCTGGTATGATTGCACCC
130 AGCACGCTT-ACAGTACGAGTTCTGATGGGATCCGGTGCA-T-TAGTGCTGGTATGATCGCACCC
* *
15094661 GTAAACTCTTGCGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCTTCCAATTTGA
192 GTCAACTCTTGCGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCCTCCAATTTGA
* * *
15094726 ATGCAAATTCGACCAAATAAT-GTTTCAAATAATTTATTTTGCAAAACCCAAATAACTAATTAGT
257 ATGCAAATTCGACCAAAT-ATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACTAATTAGT
* * * * * *
15094790 TACACCACGTGTAGAAAATACAACTAAAAAAACTTTTTACATGAAATAAAATGGGAGGGGTGAAA
321 TACACCATGTGGAGAAAATGCAACTAAAAAAA---ATTATATGAAATAAAATGGGAGGGGTGCAA
* * * *
15094855 CACGAAGACTTCCCAGAAGGTCACCCATCCAAGTACTACTTTCGCCTAAGCATGCTTAACTGC-A
383 CACGAGGACTTCCCAGAAGGTCACCCATCCTAGTACTACTCTCGCC-AAGCACGCTTAACTGCGA
*
15094919 CGTTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCT
447 -G-TTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCT
* * * * **
15094984 ATTTATATAAATGCTG-CCCTTATCGCACTTACGCCTTGAATTTCAATG-AATATTATACCAAAT
510 ATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAA-ATTCGACCAAAT
*
15095047 AACATTTCAAATTATTTATTTCACAAAAC
574 AACATTTCAAATTATTTATTTCGCAAAAC
* *
15095076 ACAAATAACTAATTAGTTACACCACGTGTTGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
**** **** * * * ** *
15095141 AAT-G-G-GGGTGCAACAC-AAGCACCGGTCAACTCTTGC-GCAAT-CT-GTTTATATAAAGCTT
66 AATGGAGAGGGTGCAACACGAAG-ACTTCCCAAGAGGT-CACCCATCCTAG--TA-CT-ACTCTC
* * * * *
15095199 GCCCAAGCACGGTTA-ATTACGAAGTTCTGATGAGATCCGGTGCATTAGTGCTGGTCTAATCGCA
125 GCCCAAGCACGCTTACAGTACG-AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA
* *
15095263 CCCGTCAACTCTTGCGCAATCTATTTATATAAAGCTTGCCCCTTATCGCACTTGCGCATCCAATT
189 CCCGTCAACTCTTGCGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCCTCCAATT
*
15095328 TGAAGGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAA-TGAATT
254 TGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACT-AATT
* * *
15095392 AGTTACACCATGTGGAAAAAATACAACTAAAAAAAAACATTATATGAAATATAATGGGAGGGGTG
318 AGTTACACCATGTGGAGAAAATGCAACT--AAAAAAA-ATTATATGAAATAAAATGGGAGGGGTG
* * * * *
15095457 CAACTCGAGGACTTCCCAGGAA-GTTACCCATGCTAGTATTACTCTCGCACAGGCACGCTTAACT
380 CAACACGAGGACTTCCCA-GAAGGTCACCCATCCTAGTACTACTCTCGC-CAAGCACGCTTAACT
* * * * * *
15095521 GCGGAGTTCTGATGGGATCCGATGCATTAGTCCTGGTAAGTTCGCACCCGTCAACACTTGGGCAA
443 GC-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAA
* * *
15095586 CCTATTTATATAAAGGCTGCCCCTTATTGCACTAGCGCCTCGAATTTGAATGCAAATTCGACCAT
507 CCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAA
* * *
15095651 ATAACGTTTTAAATTATTTATTTCGCAGAAC
572 ATAACATTTCAAATTATTTATTTCGCAAAAC
* *
15095682 GCAAATAAC-ATATTAGTTA-ATCTACGTGTAGAAAATGCTACTAAAAGAAATACTTTATATGAA
1 GCAAATAACTA-ATTAGTTACA-CCACGTGTAGAAAATGCAACTAAAA-AAA-ACTTTATATGAA
* * ** *
15095745 TTAAAATGG-GAGGGGTGCAACAC-AAGGACTTCCCAAAAGGTTGCCCATCCTAGTACTATTCTC
62 ATAAAATGGAGA-GGGTGCAACACGAA-GACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTC
* *
15095808 GCCGAAGCACGCTTGAC--TACGGAGTTCTGATGGGATCCGGTGCGTTAGTGCTGGTATGATCGC
125 GCCCAAGCACGCTT-ACAGTAC-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGC
* * * * *
15095871 ACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCTCTTATCGCAGTTGCGCCTCGAAT
188 ACCCGTCAACTCTTGCGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCCTCCAAT
* * * * *
15095936 TTGAATGCAAATTCGACCAAATATCGTTTCATATTATTTATTTAGCATAACGCAAATAACGAATG
253 TTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACTAATT
* *
15096001 AGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATAAAATTGGAGGGGTGCA
318 AGTTACACCATGTGGAGAAAATGCAACTAAAAAAA-ATTATATGAAATAAAATGGGAGGGGTGCA
*
15096066 ACACGAGGACTTCCCAAAAGGTCACCCATCCTAGTACTACTCTCGCCCCAAGCA--CTTAAACTG
382 ACACGAGGACTTCCCAGAAGGTCACCCATCCTAGTACTACTCTCG--CCAAGCACGCTT-AACTG
* ** * * *
15096129 CGGAGTTCTGATGGGATCCGATGCATTAGTGCAAGTATGATCCCACCCGTCAACTCTTGTGCAAG
444 C-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAAC
* * * * *
15096194 CTATTCATATAAATGTTGCCCCTAATCGCAATTGCGCCTCGAATTTGAATGCAAATTCGACCAAA
508 CTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAA
* * *
15096259 TATCATTTGAAATTATTTATTTCGCAAAAT
573 TAACATTTCAAATTATTTATTTCGCAAAAC
* * * *
15096289 GCAAATAACGAATGAGTTACACCACGTGAAGAAAATGCAA-TTAAAAAAA--TTATATGAAATAA
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * *
15096351 AATGG-GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAATACAACTCTCGCCCA
66 AATGGAGA-GGGTGCAACACGAAGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * * * * *
15096415 AGCATGCTTA-ACTGAGGAGTTCTAACGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-TCGA
130 AGCACGCTTACAGT-ACGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG-
* * * * *
15096478 TCAACTCTTGCGCAATCTATTCATATAAA-CGTTGCCTCTTATCGCACTTGCGCCTCGAATTTTA
193 TCAACTCTTGCGCAATCTATTTATATAAAGC-CTGCCCCTTATCGCACTTGCGCCTCCAATTTGA
* * * *
15096542 ATGCAAATTCGACCAAATATCGATTCAAATTATTTATTTCGCAAAACGCAAATAGCGAATGAGTT
257 ATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACTAATTAGTT
* * * *
15096607 ACACCTTGTGAAGAAAATGCAACTAAAAAAAATTATATGAAATAAATTGGGTGGGGTGCAACACG
322 ACACCATGTGGAGAAAATGCAACTAAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACG
* * *
15096672 AGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCATGCACGCTTAACAGCGGAGTT
387 AGGACTTCCCAGAAGGTCACCCATCCTAGTACTACTCTCG-CCAAGCACGCTTAACTGC-GAGTT
** * * *
15096737 CTGATCAGATCCGGTGCATTAATGCTGTTGTGATCGCACCCGTCAACTCTTGCGCAACCTATTTA
450 CTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTTA
* * *
15096802 TATAAAGGCTGCCCCTTATCGCCCTTGCGCCTCAAATTTGAATGCAAATTCGACCAAATAACTTT
515 TATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACATT
15096867 TCAAATTATTTATTTCGCAAAAC
580 TCAAATTATTTATTTCGCAAAAC
* * *
15096890 GCAAATAACGAATTAGTTACACCACGTGGAGAAATTGCAACT-AAAAAAACTTTATATGAAATAA
1 GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * ** * *
15096954 AGTGG-GAGCGGTGCAACAGGTGGACTTCCCTAGAGGTCACCCCATCTTAGTACTACTCTCGCCC
66 AATGGAGAG-GGTGCAACACGAAGACTTCCCAAGAGGTCA-CCCATCCTAGTACTACTCTCGCCC
* * * ** * * * * *
15097018 AAGCACGCTTA-ACTGCAGAGTTCTGATGGAATCTAGTGTATTCGTTCTAGTATGATCGCACCCA
129 AAGCACGCTTACAGTAC-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
*
15097082 TCAACTCTTGTGCAATCTATTTATATAAAGGCC-GCCCCTTATCGCACTT
193 TCAACTCTTGCGCAATCTATTTATATAAA-GCCTGCCCCTTATCGCACTT
15097131 TTTCCTCAAA
Statistics
Matches: 2270, Mismatches: 312, Indels: 153
0.83 0.11 0.06
Matches are distributed among these distances:
600 9 0.00
601 308 0.14
602 469 0.21
603 116 0.05
604 124 0.05
605 468 0.21
606 258 0.11
607 263 0.12
608 25 0.01
609 199 0.09
610 3 0.00
611 24 0.01
612 3 0.00
613 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (602 bp):
GCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
AATGGAGAGGGTGCAACACGAAGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
GCACGCTTACAGTACGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
ACTCTTGCGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCCTCCAATTTGAATGC
AAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACTAATTAGTTACAC
CATGTGGAGAAAATGCAACTAAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
CTTCCCAGAAGGTCACCCATCCTAGTACTACTCTCGCCAAGCACGCTTAACTGCGAGTTCTGATG
GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTTATATAAA
GGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACATTTCAAAT
TATTTATTTCGCAAAAC
Found at i:15097712 original size:303 final size:302
Alignment explanation
Indices: 15097136--15100889 Score: 4361
Period size: 302 Copynumber: 12.3 Consensus size: 302
15097126 CACTTTTTCC
* **
15097136 TCAAATTATTTATTTCACAAAACGCAAATAACGAATTTGTTACACCACGTGGAGAAAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * * *
15097201 AAAAAAACT-TTATAAGAAA-AAAACTGGGAAGGGTGCAACATGAGGACTTCCAAAGAGGTCACC
66 AAAAAAA-TATTATATGAAATAAAA-TGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACC
* * * * * * *
15097264 CATCCTAGTACTAATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAATGAGATCCGGTACATTT
129 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
* * * *
15097329 GTGCTGGTATGATCGCACCTGTCAACTTTTGCGCAATCTATTTATATAAAGGCTGACCCTTATCG
194 GTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
* * *
15097394 CACTTGCGCCTCGAATTTTAAGGCAAATTCGACCGAATATCGTT
259 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* *** * *
15097438 TCAAATTATTAACTTTAAAAAAACGCAAATAACGAATAAGTTACACCACGTGGAGAAAACGCAAC
1 TCAAATTATTTA-TTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAAC
* *
15097503 TAAAAAAATATTATATGAAATAAAATGGTAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
65 TAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCC
* * * *
15097568 ATCCTAGTACTACTCTTGCCCAAACACGCTTAACTGCGGAGTTCTGACGGGATTCGGTGCATTAG
130 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* * * *
15097633 TGCTGGTTTGATCGCACCCGTCAACTCTTGCGCAATCTACTCATATAAAGGCTACCTCTTATCGC
195 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* *
15097698 AGTTGCGACTCGAATTTGAATGCAAATTCGACCAAATATCGTT
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * *
15097741 TCAAATTATTTATTTCGCATAACGTAAATAAC-AGATGAGTTACACGACGTGGAGAAAATGCAAC
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGA-ATGAGTTACACCACGTGGAGAAAATGCAAC
**
15097805 TAAAAAAA-ATTGGATGAAATAAAATGGGAGGGGTGCAACACGAGGACTT-CCAAGGAGGTCACC
65 TAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA-GAGGTCACC
* * *
15097868 CATCCTAGTACTACTCTCGCCCATGCACGCTTAACAGCGGAGTTCTGATGAGATCCGGTGCATTA
129 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
* * *
15097933 ATGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCG
194 GTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
* * *
15097998 CCCTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACTTT
259 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * * *
15098042 TCAAATTATTTATTTCGCAAAACGCATATAACGAATTAGTTACAACACGTGGAGAAATTGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * * *
15098107 AAAAAAACT-TTATTTGAAATAAAATGGGAGCGGTGCAACACGTGGACTTCCGAAGAGGTCACCC
66 AAAAAAA-TATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCC
* * * *
15098171 ATCCTAGTACTACTCTCGCCCAAGCTCGCTTAACTGAGGAGTTCTGATGGAATCCGGTGTATTAG
130 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
** * * * * *
15098236 CACTAGTATGATCGCACCCGTCAACTCTT-CTACAATCTATTTATATAAAGACCGCCCCTTATCG
195 TGCTGGTATGATCGCACCCGTCAACTCTTGC-GCAATCTATTCATATAAAGGCTGCCCCTTATCG
** * * *
15098300 CACTTTTGCCTCGAATTTTAATGCAAATTCTACCAAATAACGTT
259 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * *
15098344 TCAAATTATTTATTTCGAAAAACGCAAATAACGAATTAGCTACACCACGTGGAGAAAATGCAAC-
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * *
15098408 AAAAAAACCT-TTATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCCAAAGAGGTCACC
66 AAAAAAA--TATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACC
* * * * * * * * *
15098472 CATACTAGTACTAATCTCACCAAAGCACGCTAAATTGCGGAGTTCTAATGAGATCCGGTGCATTT
129 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
* * * * * *
15098537 GTTCTGGTATGATCGCACCTGTCAACTTTTGCGTAATCTATTTATATAAAGGCTGGCCCTTATCG
194 GTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
*
15098602 CACTTGCGCCTCGAATTTTAATGCAAATTCG-CCAAATATCGTT
259 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * * * *
15098645 TCAGATTATTAATTTCGCAAAACGCAAATAACGAATGAGTTACACCATGTGTAGAAAATGCAATT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * *
15098710 AAAAAAA-ATTATATTAAATAAAATGGGAGCGGTGCAACACGTGGNNNNNNNNNNNNNNNNNNNN
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGG--------------------
***************************************************************
15098774 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
111 --ACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
*************** * *
15098839 NNNNNNNNNNNNNNNCCTGT-GTATTAGCACTAGTATGATCGCACCCGTCAACTCTT-CTGCAAT
174 TGATGGGATCCGGTGCAT-TAG--T--G--CTGGTATGATCGCACCCGTCAACTCTTGC-GCAAT
*
15098902 CTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAA
231 CTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAA
*
15098967 TATTGGTT
296 TA-TCGTT
* * * *
15098975 T-AAGTTAATTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
*
15099039 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTGACCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
* * *
15099104 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC-GAATGAGATCTGGTGAATTAG
131 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTG-ATGGGATCCGGTGCATTAG
*** * * *
15099168 TGCTGGTATGATCGCACCCGGGGACTCTTGCGCAATCTATTCATTTAGAGGGCTTCCCCTTATCG
195 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA-AAGGCTGCCCCTTATCG
*
15099233 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATTGTT
259 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
*
15099277 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCAAGTGGAGAAAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
15099342 AAAAGAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTGT-CCAAGAGGTCACC
66 AAAA-AAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACT-TCCCAAGAGGTCACC
* * * * * *
15099406 CATCCTAGTACTACTCTCGCCCAATCACGTTTAACTACGAAGTTTTAATGGGATCCGGTGCATTA
129 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
* * * *
15099471 GTGCTGGTATAATCGCACTCGTCAACTCTTGCGCAATCTGTTCATATAAAGGTTGCCCCTTATCG
194 GTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
*
15099536 CACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATATCGTT
259 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * * *
15099580 TCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAATTACACCACGTGGAGAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * * *
15099645 AAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGATTTCCCAGGAGGTCACCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
* * * * *
15099710 TCCTAGTACTAATCTCGCCCAAGCACACTTAACTGCGGAGTTTTGATGGTATCCGATGCATTAGT
131 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* * * * * *
15099775 GATAGTATAATCGCACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGTTGCCCATTATCGCA
196 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* * **
15099840 ATTGCGCCTCGAATTTGAATGCAAATTCAATAAAATATCGTT
261 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * *
15099882 TCAAATTATTTATTTCGCAAAACGCAAATAACAAATGAGTTACACAACGTGAAGAAAATGCAAC-
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * *
15099946 AAAAAAA-ATTATCTGAAATAAAATGGGAGGTGTGCAACACGAGGACTTCCCAAGAGGTCGCCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
* * * * * *
15100010 TCCTAGTATTACTCTTGCCCAAGCGCGCTTAACTGCGGCGTTTTGATGGGATCCGGTGCATTAGA
131 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* *
15100075 GCTGGTATGATCACACCCGTCAACCCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
196 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
** * * *
15100140 CTTGCAACTCGAATTTTAACGCAAATTCGACCAAATATCATT
261 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* *
15100182 TCAAATTATTTATTTCGCAAAATGCAAATAACGAATGAGTTGCACCACG-GGAAGAAAATGCAAC
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGG-AGAAAATGCAAC
** *
15100246 T-AAAAAA-ATTATATGAAATAAAATAAGAGGGGTGCAACACGAGGACAT-CCAAGGAGGTCACC
65 TAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA-GAGGTCACC
* * *
15100308 CATCCTAGTACTACTCTCGCCCAAGCACGCTTACCTGCGGAGTTCTGATGGGATCCAGTGGATTA
129 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
*
15100373 GTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
194 GTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
* *
15100438 CACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTGGTT
259 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATA-TCGTT
* * * *
15100483 T-AAGTTAATTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
*
15100547 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTGACCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
* * *
15100612 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC-GAATGAGATCTGGTGAATTAG
131 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTG-ATGGGATCCGGTGCATTAG
* *
15100676 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATTTAAAGGCTTCCCCTTATCGC
195 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* *
15100741 ACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTGTT
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
*
15100784 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCAAGTGGAGAAAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
15100849 AAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACA
66 -AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACA
15100890 NNNNNNNNNN
Statistics
Matches: 2899, Mismatches: 486, Indels: 133
0.82 0.14 0.04
Matches are distributed among these distances:
299 5 0.00
300 546 0.19
301 367 0.13
302 1080 0.37
303 543 0.19
304 157 0.05
305 1 0.00
306 1 0.00
307 1 0.00
308 2 0.00
322 3 0.00
323 1 0.00
324 1 0.00
327 1 0.00
328 83 0.03
329 68 0.02
330 39 0.01
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.26
Consensus pattern (302 bp):
TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
Found at i:15100186 original size:602 final size:604
Alignment explanation
Indices: 15097136--15100889 Score: 4388
Period size: 602 Copynumber: 6.2 Consensus size: 604
15097126 CACTTTTTCC
* ** *
15097136 TCAAATTATTTATTTCACAAAACGCAAATAACGAATTTGTTACACCACGTGGAGAAAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACA
* * * *
15097201 AAAAAAACTTTATAAGAAA-AAAACTGGGAAGGGTGCAACATGAGGACTTCCAAAGAGGTCACCC
66 AAAAAAACATTATATGAAATAAAA-TGGGAGGGGTGCAACACGAGGACTTCCAAAGAGGTCACCC
* * * * *
15097265 ATCCTAGTACTAATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAATGAGATCCGGTACATTTG
130 ATCCTAGTACTAATCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATCCGGTGCATTAG
* * * * *
15097330 TGCTGGTATGATCGCACCTGTCAACTTTTGCGCAATCTATTTATATAAAGGCTGACCCTTATCGC
195 TGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* * * * ***
15097395 ACTTGCGCCTCGAATTTTAAGGCAAATTCGACCGAATATCGTTTCAAATTATTAACTTTAAAAAA
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTA-TTTCGCAAA
* * *
15097460 ACGCAAATAACGAATAAGTTACACCACGTGGAGAAAACGCAACTAAAAAAATATTATATGAAATA
324 ACGCAAATAACGAATGAGTTACACAACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATA
* * *
15097525 AAATGGTAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTTGCCCA
389 AAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * * * * *
15097590 AACACGCTTAACTGCGGAGTTCTGACGGGATTCGGTGCATTAGTGCTGGTTTGATCGCACCCGTC
454 AGCACGCTTAACTGCGGAGTTTTGATGGGATCCGGTGCATTAGAGCTGGTATGATCGCACCCGTC
* * * *
15097655 AACTCTTGCGCAATCTACTCATATAAAGGCTACCTCTTATCGCAGTTGCGA-CTCGAATTTGAAT
519 AACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGC-ACCTCGAATTTGAAT
15097719 GCAAATTCGACCAAATATCGTT
583 GCAAATTCGACCAAATATCGTT
* * *
15097741 TCAAATTATTTATTTCGCATAACGTAAATAAC-AGATGAGTTACACGACGTGGAGAAAATGCAAC
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGA-ATGAGTTACACCACGTGGAGAAAATGCAAC
* ** *
15097805 TAAAAAAA-ATTGGATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCAAGGAGGTCACCC
65 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCAAAGAGGTCACCC
* * * *
15097869 ATCCTAGTACTACTCTCGCCCATGCACGCTTAACAGCGGAGTTCTGATGAGATCCGGTGCATTAA
130 ATCCTAGTACTAATCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATCCGGTGCATTAG
*
15097934 TGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGC
195 TGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* * *
15097999 CCTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAAA
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAA
* * * *
15098064 CGCATATAACGAATTAGTTACA-ACACGTGGAGAAATTGCAACTAAAAAAACT-TTATTTGAAAT
325 CGCAAATAACGAATGAGTTACACA-ACGTGGAGAAAATGCAACTAAAAAAA-TATTATATGAAAT
* * *
15098127 AAAATGGGAGCGGTGCAACACGTGGACTTCCGAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
388 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
* * * * * *
15098192 AAGCTCGCTTAACTGAGGAGTTCTGATGGAATCCGGTGTATTAGCA-CTAGTATGATCGCACCCG
453 AAGCACGCTTAACTGCGGAGTTTTGATGGGATCCGGTGCATTAG-AGCTGGTATGATCGCACCCG
* * * * *** *
15098256 TCAACTCTT-CTACAATCTATTTATATAAAGACCGCCCCTTATCGCACTTTTGCCTCGAATTTTA
517 TCAACTCTTGC-GCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTGA
* *
15098320 ATGCAAATTCTACCAAATAACGTT
581 ATGCAAATTCGACCAAATATCGTT
* * *
15098344 TCAAATTATTTATTTCGAAAAACGCAAATAACGAATTAGCTACACCACGTGGAGAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACA
* * * *
15098409 AAAAAACCTTTATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCCAAAGAGGTCACCCA
66 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCAAAGAGGTCACCCA
* * * * * * *
15098474 TACTAGTACTAATCTCACCAAAGCACGCTAAATTGCGGAGTTCTAATGAGATCCGGTGCATTTGT
131 TCCTAGTACTAATCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATCCGGTGCATTAGT
* * * * * * *
15098539 TCTGGTATGATCGCACCTGTCAACTTTTGCGTAATCTATTTATATAAAGGCTGGCCCTTATCGCA
196 GCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* * *
15098604 CTTGCGCCTCGAATTTTAATGCAAATTCG-CCAAATATCGTTTCAGATTATTAATTTCGCAAAAC
261 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAAC
* * * * *
15098668 GCAAATAACGAATGAGTTACACCATGTGTAGAAAATGCAATTAAAAAAA-ATTATATTAAATAAA
326 GCAAATAACGAATGAGTTACACAACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATAAA
* * ***************
15098732 ATGGGAGCGGTGCAACACGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
391 ATGGGAGGGGTGCAACACGAGG----------------------------ACTTCCCAAGAGGTC
********************************************************* * *
15098797 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTGTA
428 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTTTGATGGGATCCGGTGCA
*
15098862 TTAGCA-CTAGTATGATCGCACCCGTCAACTCTT-CTGCAATCTATTCATATAAAGGCTGCCCCT
493 TTAG-AGCTGGTATGATCGCACCCGTCAACTCTTGC-GCAATCTATTCATATAAAGGCTGCCCCT
*
15098925 TATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTGGTT
556 TATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATA-TCGTT
* * *
15098975 T-AAGTTAATTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACA
* * *
15099039 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTGACCCA
66 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCAAAGAGGTCACCCA
* * *
15099104 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC-GAATGAGATCTGGTGAATTAG
131 TCCTAGTACTAATCTCGCCCAAGCACGCTTAACTGCGGAGTTCTG-ATGAGATCCGGTGCATTAG
* *** * * *
15099168 TGCTGGTATGATCGCACCCGGGGACTCTTGCGCAATCTATTCATTTAGAGGGCTTCCCCTTATCG
195 TGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA-AAGGCTGCCCCTTATCG
*
15099233 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATTGTTTCAAATTATTTATTTCGCAAA
259 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAA
15099298 ACGCAAATAACGAATGAGTTACACCAA-GTGGAGAAAATGCAACTAAAAGAAATATTATATGAAA
324 ACGCAAATAACGAATGAGTTACA-CAACGTGGAGAAAATGCAACTAAAA-AAATATTATATGAAA
15099362 TAAAATGGGAGGGGTGCAACACGAGGACTGT-CCAAGAGGTCACCCATCCTAGTACTACTCTCGC
387 TAAAATGGGAGGGGTGCAACACGAGGACT-TCCCAAGAGGTCACCCATCCTAGTACTACTCTCGC
* * * * * * * *
15099426 CCAATCACGTTTAACTACGAAGTTTTAATGGGATCCGGTGCATTAGTGCTGGTATAATCGCACTC
451 CCAAGCACGCTTAACTGCGGAGTTTTGATGGGATCCGGTGCATTAGAGCTGGTATGATCGCACCC
* * *
15099491 GTCAACTCTTGCGCAATCTGTTCATATAAAGGTTGCCCCTTATCGCACTTGCGCCTCGAATTTGA
516 GTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTGA
*
15099556 ATTCAAATTCGACCAAATATCGTT
581 ATGCAAATTCGACCAAATATCGTT
* * *
15099580 TCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAATTACACCACGTGGAGAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACA
* * * *
15099645 AAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGATTTCCCAGGAGGTCACCCA
66 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCAAAGAGGTCACCCA
* * *
15099710 TCCTAGTACTAATCTCGCCCAAGCACACTTAACTGCGGAGTTTTGATG-GTATCCGATGCATTAG
131 TCCTAGTACTAATCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAG-ATCCGGTGCATTAG
* * * * *
15099774 TGATAGTATAATCGCACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGTTGCCCATTATCGC
195 TGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* * **
15099839 AATTGCGCCTCGAATTTGAATGCAAATTCAATAAAATATCGTTTCAAATTATTTATTTCGCAAAA
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAA
* * *
15099904 CGCAAATAACAAATGAGTTACACAACGTGAAGAAAATGCAAC-AAAAAAA-ATTATCTGAAATAA
325 CGCAAATAACGAATGAGTTACACAACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATAA
* * * *
15099967 AATGGGAGGTGTGCAACACGAGGACTTCCCAAGAGGTCGCCCATCCTAGTATTACTCTTGCCCAA
390 AATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * *
15100032 GCGCGCTTAACTGCGGCGTTTTGATGGGATCCGGTGCATTAGAGCTGGTATGATCACACCCGTCA
455 GCACGCTTAACTGCGGAGTTTTGATGGGATCCGGTGCATTAGAGCTGGTATGATCGCACCCGTCA
* * * *
15100097 ACCCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCAACTCGAATTTTAACGC
520 ACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTGAATGC
*
15100162 AAATTCGACCAAATATCATT
585 AAATTCGACCAAATATCGTT
* *
15100182 TCAAATTATTTATTTCGCAAAATGCAAATAACGAATGAGTTGCACCACG-GGAAGAAAATGCAAC
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGG-AGAAAATGCAAC
* ** * *
15100246 -TAAAAAA-ATTATATGAAATAAAATAAGAGGGGTGCAACACGAGGACATCCAAGGAGGTCACCC
65 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCAAAGAGGTCACCC
* * * * *
15100309 ATCCTAGTACTACTCTCGCCCAAGCACGCTTACCTGCGGAGTTCTGATGGGATCCAGTGGATTAG
130 ATCCTAGTACTAATCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATCCGGTGCATTAG
15100374 TGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
195 TGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* * * *
15100439 ACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTGGTTT-AAGTTAATTATTTCGCAAA
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATA-TCGTTTCAAATTATTTATTTCGCAAA
* * *
15100503 ACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACAAAAAAAATATTATATGAAATA
324 ACGCAAATAACGAATGAGTTACACAACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATA
*
15100568 AAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTGACCCATCCTAGTACTACTCTCGCCCA
389 AAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * * * *
15100633 AGCACGCTTAACTGCGGAG-TTCGAATGAGATCTGGTGAATTAGTGCTGGTATGATCGCACCCGT
454 AGCACGCTTAACTGCGGAGTTTTG-ATGGGATCCGGTGCATTAGAGCTGGTATGATCGCACCCGT
* *
15100697 CAACTCTTGCGCAATCTATTCATTTAAAGGCTTCCCCTTATCGCACTTGCACCTCGAATTTGAAT
518 CAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTGAAT
*
15100762 GCAAATTCGACCAAATATTGTT
583 GCAAATTCGACCAAATATCGTT
*
15100784 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCAAGTGGAGAAAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAAC-
*
15100849 AAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACA
65 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACA
15100890 NNNNNNNNNN
Statistics
Matches: 2633, Mismatches: 452, Indels: 128
0.82 0.14 0.04
Matches are distributed among these distances:
600 257 0.10
601 25 0.01
602 554 0.21
603 383 0.15
604 416 0.16
605 214 0.08
606 312 0.12
607 2 0.00
630 311 0.12
631 48 0.02
632 72 0.03
633 5 0.00
634 34 0.01
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.26
Consensus pattern (604 bp):
TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACA
AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCAAAGAGGTCACCCA
TCCTAGTACTAATCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATCCGGTGCATTAGT
GCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAAC
GCAAATAACGAATGAGTTACACAACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATAAA
ATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
CACGCTTAACTGCGGAGTTTTGATGGGATCCGGTGCATTAGAGCTGGTATGATCGCACCCGTCAA
CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTGAATGCA
AATTCGACCAAATATCGTT
Found at i:15102226 original size:303 final size:302
Alignment explanation
Indices: 15101387--15103295 Score: 2582
Period size: 303 Copynumber: 6.3 Consensus size: 302
15101377 NNNNNNNNNN
* * *
15101387 GTTTCAAATTATTTATTTCGCAAAACGCAATTAACGAATGAGTTACACCGCGTGGAAAAAATGCA
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA
*
15101452 AC-AAAAAAAATATTATATGAAATAAAATGGGAGGGGGTGCAACACGAGGACTTCCCAAGAGGTG
66 ACTAAAAAAAATATTATATGAAATAAAATGGGA-GGGGTGCAACACGAGGACTTCCCAAGAGGTC
* * *
15101516 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGC-AGAGTTCGAATGAGATCTGGTGA
130 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGA-AGTTCTAATG-GATCCGGTGC
* **
15101580 ATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATTTAAAGTTTGCCCCTT
193 ATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTT
15101645 ATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATC
258 ATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATC
* * * * **
15101690 GTTCCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAG-T-CACCAAGTGTGGAGAAAGCG
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACC-A-CGTGGAGAAAATG
*
15101753 C-A-TAAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGT
64 CAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGT
* * * *
15101816 CACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGC-AGACTTTTGATGGTATCCGATG
129 CACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGA-AGTTCTAATGG-ATCCGGTG
* * * * *
15101880 CATTAGTGCTAGTATAATCGCATCCGTCAACTCTTGTGCAATCTATTCATATAAAGGTTGCCCCT
192 CATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCT
* * *
15101945 TATCGCAATTGTGCCTCGAATTTGAATGCAAATTCGGCCAAATATC
257 TATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATC
*
15101991 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACAAATGAGTT-CACTC-CGT-GAGGAAAATG
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACAC-CACGTGGA-GAAAATG
* * *
15102053 AAACTAAAAAAAATATTATCTGAAATAAATTGGGGAGGGGTGCAACACGAGGACTTCCCAAGAGG
64 CAACTAAAAAAAATATTATATGAAATAAAAT-GGGAGGGGTGCAACACGAGGACTTCCCAAGAGG
* *
15102118 TCACCCATCCTAGTTCTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTTTAATAGGATCCGGTG
128 TCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTCTAAT-GGATCCGGTG
*
15102183 CATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCT
192 CATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCT
* ** *
15102248 TATCGCCCTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
257 TATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATC
* * * *
15102294 TTTTCAAATTATTTATTTCGCAAAACGCAAATAAGGAATTAGTTACACCACGTGGAGAAATTGCA
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA
* * * * *
15102359 ACTAAAAAAAACT-TTATATGAAATAAAATGGGAGCGGTGCAGCACGTGGACTTCCTAGGAGGTC
66 ACTAAAAAAAA-TATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTC
* * * * *
15102423 ACCCATCGTAGTACTACACTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGTA
130 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTCTAATGG-ATCCGGTGCA
* * * * *
15102488 TTAGTTCTAGTATGATCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCCGCCCCTTA
194 TTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTA
** * *
15102553 TCGCACTTTTGCCTCGAATTTGAATGCAAATTCTACCAAATAAC
259 TCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATC
* *
15102597 GTTTCAAATT-TTTATTTCGCAAAACGTAAATAATGAAAT-AGTTACACCACGTGGAGAAAATGC
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGGAGAAAATGC
* * * **
15102660 AACTAAAAAAACT-TTATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCAAAAGAGGTC
65 AACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTC
* * * * * * * *
15102724 ACCCATCGTAGTACTAATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAATTAGATTCGGTGTA
130 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTCTAA-TGGATCCGGTGCA
* * * **
15102789 TTTGTGCTGGTATGATCGCACCCGTCAACTTTTGCGCAATCTATTTATATAAAGGCTAACCCTTA
194 TTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTA
* * *
15102854 TCGCACTTGCGCCTTGAATTTTAATGCCAATTCGACCAAATATC
259 TCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATC
* * * *
15102898 GTTTCAAATTATTAAATTTTG-AAAACGCAAATAACGAATGAGTTACGCCACGTGGAGAAAACGC
1 GTTTCAAATTATT-TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGC
* * *
15102962 AACT-AAAAAAATATTATATGAAATAAACTGGGAGGGGTGCAACACGAGGACTTCTCAGGAGGTC
65 AACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTC
* * * *
15103026 ACCCATCC---TACTACTCTCGCCCAAACACGCTTAACTGCGGAGTTCTGATGAGATTCGGTGCA
130 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTCTAATG-GATCCGGTGCA
* * *
15103088 TTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCTCTGA
194 TTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTA
*
15103153 TCGCAGTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATC
259 TCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATC
* * *
15103197 GTTTCATATTATTTATTTCGCATAACGCAAATAACGAATGAGTTACACCACGTGGGGAAAATGCA
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA
15103262 ACT--AAAAAATATTATATGAAATAAAATGGGAGGG
66 ACTAAAAAAAATATTATATGAAATAAAATGGGAGGG
15103296 NNNNNNNNNN
Statistics
Matches: 1420, Mismatches: 161, Indels: 55
0.87 0.10 0.03
Matches are distributed among these distances:
298 36 0.03
299 199 0.14
300 8 0.01
301 441 0.31
302 215 0.15
303 477 0.34
304 41 0.03
305 3 0.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (302 bp):
GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA
ACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCA
CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTCTAATGGATCCGGTGCATT
AGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATC
GCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATC
Found at i:15102593 original size:907 final size:902
Alignment explanation
Indices: 15101387--15103293 Score: 2638
Period size: 907 Copynumber: 2.1 Consensus size: 902
15101377 NNNNNNNNNN
* * *
15101387 GTTTCAAATTATTTATTTCGCAAAACGCAATTAACGAATGAGTTACACCGCGTGGAAAAAATGCA
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA
* *
15101452 AC-AAAAAAAATATTATATGAAATAAAATGGGAGGGGGTGCAACACGAGGACTTCCCAAGAGGTG
66 ACTAAAAAAAAT-TTATATGAAATAAAATGGGA-GCGGTGCAACACGAGGACTTCCCAAGAGGTC
* *
15101516 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCGAATGAGATCTGGTGAA
129 ACCCATCCTAGTACTACACTCGCCCAAGCACGCTTAACTGCAGAGTTCGAATGAGATCCGGTGAA
* * ***
15101581 TTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATTTAAAGTTTGCCCCTTA
194 TTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCCGCCCCTTA
*
15101646 TCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCGC
259 TCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTCCAAATT-TTTATTTCGC
* * * *
15101711 ATAACGCAAATAA-GGAATGAG-T-CACCAAGTGTGGAGAAAGCGC-A-TAAAAAAAATATTATA
323 AAAACGCAAATAATGAAAT-AGTTACACC-A-CGTGGAGAAAACGCAACTAAAAAAAAT-TTATA
* ** * *
15101771 TGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTC
384 AGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCAAAAGAGGTCACCCATCCTAGTACTAATC
* * * *
15101836 TCGCCCAAGCACGCTTAACTGCAGACTTTTGA-TGGTATCCGATGCATTAGTGCTAGTATAATCG
449 TCGCCCAAGCACGCTAAACTGCAGACTTCTAATTAG-ATCCGATGCATTAGTGCTAGTATAATCG
* * * ** *
15101900 CATCCGTCAACTCTTGTGCAATCTATTCATATAAAGGTTGCCCCTTATCGCAATTGTGCCTCGAA
513 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTAACCCTTATCGCAATTGCGCCTCGAA
* *
15101965 TTTGAATGCAAATTCGGCCAAATATCGTTTCAAATTATT-TATTTCGCAAAACGCAAATAACAAA
578 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTAAATTTCG-AAAACGCAAATAACAAA
* * * *
15102029 TGAGTTCAC-TC-CGT-GAGGAAAATGAAACTAAAAAAAATATTATCTGAAATAAATTGGGGAGG
642 TGAGTT-ACGCCACGTGGA-GAAAACGAAACT-AAAAAAATATTATATGAAATAAACT-GGGAGG
*
15102091 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTTCTACTCTCGCCCAAGCACGCTTA
703 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTA---CTACTCTCGCCCAAACACGCTTA
*
15102156 ACTGCGAAGTTTTAAT-AGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC
765 ACTGCGAAGTTCTAATGA-GATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC
* * * * **
15102220 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCCCTTGCGCCTCGAATTTGAATTTAAATTCGA
829 ACAATCTATTCATATAAAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
15102285 CCAAATAAC
894 CCAAATAAC
* * * *
15102294 TTTTCAAATTATTTATTTCGCAAAACGCAAATAAGGAATTAGTTACACCACGTGGAGAAATTGCA
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA
* * * *
15102359 ACTAAAAAAAACTTTATATGAAATAAAATGGGAGCGGTGCAGCACGTGGACTTCCTAGGAGGTCA
66 ACTAAAAAAAA-TTTATATGAAATAAAATGGGAGCGGTGCAACACGAGGACTTCCCAAGAGGTCA
* * *
15102424 CCCATCGTAGTACTACACTCGCCCAAGCACGCTTAACTGCGGAGTTCTG-ATG-GAATCCGGTGT
130 CCCATCCTAGTACTACACTCGCCCAAGCACGCTTAACTGCAGAGTTC-GAATGAG-ATCCGGTGA
* * *
15102487 ATTAGTTCTAGTATGATCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCCGCCCCTT
193 ATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCCGCCCCTT
** * *
15102552 ATCGCACTTTTGCCTCGAATTTGAATGCAAATTCTACCAAATAACGTTTCAAATTTTTATTTCGC
258 ATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTCCAAATTTTTATTTCGC
* * *
15102617 AAAACGTAAATAATGAAATAGTTACACCACGTGGAGAAAATGCAACTAAAAAAACTTTATAAGAA
323 AAAACGCAAATAATGAAATAGTTACACCACGTGGAGAAAACGCAACTAAAAAAAATTTATAAGAA
* *
15102682 ATAAAATGGGAGGGGTGCAACATGAGGACTTCAAAAGAGGTCACCCATCGTAGTACTAATCTCGC
388 ATAAAATGGGAGGGGTGCAACACGAGGACTTCAAAAGAGGTCACCCATCCTAGTACTAATCTCGC
* * * * * * * * *
15102747 CCAAGCACGCTAAATTGCGGAGTTCTAATTAGATTCGGTGTATTTGTGCTGGTATGATCGCACCC
453 CCAAGCACGCTAAACTGCAGACTTCTAATTAGATCCGATGCATTAGTGCTAGTATAATCGCACCC
* * * * *
15102812 GTCAACTTTTGCGCAATCTATTTATATAAAGGCTAACCCTTATCGCACTTGCGCCTTGAATTTTA
518 GTCAACTCTTGCGCAATCTATTCATATAAAGGCTAACCCTTATCGCAATTGCGCCTCGAATTTGA
* * *
15102877 ATGCCAATTCGACCAAATATCGTTTCAAATTATTAAATTTTGAAAACGCAAATAACGAATGAGTT
583 ATGCAAATTCGACCAAATATCGTTTCAAATTATTAAATTTCGAAAACGCAAATAACAAATGAGTT
*
15102942 ACGCCACGTGGAGAAAACGCAACTAAAAAAATATTATATGAAATAAACTGGGAGGGGTGCAACAC
648 ACGCCACGTGGAGAAAACGAAACTAAAAAAATATTATATGAAATAAACTGGGAGGGGTGCAACAC
* * *
15103007 GAGGACTTCTCAGGAGGTCACCCATCCTACTACTCTCGCCCAAACACGCTTAACTGCGGAGTTCT
713 GAGGACTTCCCAAGAGGTCACCCATCCTACTACTCTCGCCCAAACACGCTTAACTGCGAAGTTCT
* *
15103072 GATGAGATTCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATA
778 AATGAGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATA
* * *
15103137 TAAAGGCTGCCTCTGATCGCAGTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATC
843 TAAAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAAC
* * *
15103197 GTTTCATATTATTTATTTCGCATAACGCAAATAACGAATGAGTTACACCACGTGGGGAAAATGCA
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA
*
15103262 ACTAAAAAATA-TTATATGAAATAAAATGGGAG
66 ACTAAAAAAAATTTATATGAAATAAAATGGGAG
15103294 GGNNNNNNNN
Statistics
Matches: 882, Mismatches: 103, Indels: 36
0.86 0.10 0.04
Matches are distributed among these distances:
901 21 0.02
903 213 0.24
904 1 0.00
906 80 0.09
907 502 0.57
908 62 0.07
909 3 0.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (902 bp):
GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA
ACTAAAAAAAATTTATATGAAATAAAATGGGAGCGGTGCAACACGAGGACTTCCCAAGAGGTCAC
CCATCCTAGTACTACACTCGCCCAAGCACGCTTAACTGCAGAGTTCGAATGAGATCCGGTGAATT
AGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCCGCCCCTTATC
GCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTCCAAATTTTTATTTCGCAAA
ACGCAAATAATGAAATAGTTACACCACGTGGAGAAAACGCAACTAAAAAAAATTTATAAGAAATA
AAATGGGAGGGGTGCAACACGAGGACTTCAAAAGAGGTCACCCATCCTAGTACTAATCTCGCCCA
AGCACGCTAAACTGCAGACTTCTAATTAGATCCGATGCATTAGTGCTAGTATAATCGCACCCGTC
AACTCTTGCGCAATCTATTCATATAAAGGCTAACCCTTATCGCAATTGCGCCTCGAATTTGAATG
CAAATTCGACCAAATATCGTTTCAAATTATTAAATTTCGAAAACGCAAATAACAAATGAGTTACG
CCACGTGGAGAAAACGAAACTAAAAAAATATTATATGAAATAAACTGGGAGGGGTGCAACACGAG
GACTTCCCAAGAGGTCACCCATCCTACTACTCTCGCCCAAACACGCTTAACTGCGAAGTTCTAAT
GAGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAA
AGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAAC
Found at i:15102695 original size:604 final size:605
Alignment explanation
Indices: 15101387--15103295 Score: 2703
Period size: 604 Copynumber: 3.2 Consensus size: 605
15101377 NNNNNNNNNN
* * *
15101387 GTTTCAAATTATTTATTTCGCAAAACGCAATTAACGAATGAGTTACACCGCGTGGAAAAAATGCA
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA
*
15101452 AC-AAAAAAAATATTATATGAAATAAAATGGGAGGGGGTGCAACACGAGGACTTCCCAAGAGGTG
66 ACTAAAAAAAATATTATATGAAATAAAATGGGA-GGGGTGCAACACGAGGACTTCCCAAGAGGTC
* *
15101516 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGC-AGAGTTCGAAT-GAGATCTGGTG
130 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGA-AGTTCTAATAG-GATCCGGTG
* * **
15101579 AATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATTTAAAGTTTGCCCCT
193 AATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCT
*
15101644 TATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTC
258 TATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTC
* * *
15101709 GCATAACGCAAATAAGGAATGAG-T-CACCAAGTGTGGAGAAAGCGC-A-TAAAAAAAATATTAT
323 GCAAAACGCAAATAAGGAATGAGTTACACC-A-CGTGGAGAAAACGCAACTAAAAAAAATATTAT
*
15101770 ATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
386 ATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCAT-CTAGTACTACT
* * * * * *
15101835 CTCGCCCAAGCACGCTTAACTGCAGACTTTTGATGGTATCCGATGCATTAGTGCTAGTATAATCG
450 CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGCATTAGTGCTAGTATGATCG
* *
15101900 CATCCGTCAACTCTTGTGCAATCTATTCATATAAAGGTTGCCCCTTATCGCAATTGTGCCTCGAA
515 CACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAATTGTGCCTCGAA
*
15101965 TTTGAATGCAAATTCGGCCAAATATC
580 TTTGAATGCAAATTCGACCAAATATC
*
15101991 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACAAATGAGTT-CACTC-CGT-GAGGAAAATG
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACAC-CACGTGGA-GAAAATG
* * *
15102053 AAACTAAAAAAAATATTATCTGAAATAAATTGGGGAGGGGTGCAACACGAGGACTTCCCAAGAGG
64 CAACTAAAAAAAATATTATATGAAATAAAAT-GGGAGGGGTGCAACACGAGGACTTCCCAAGAGG
* *
15102118 TCACCCATCCTAGTTCTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTTTAATAGGATCCGGTG
128 TCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTCTAATAGGATCCGGTG
*
15102183 CATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCT
193 AATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCT
* ** * *
15102248 TATCGCCCTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAACTTTTCAAATTATTTATTTC
258 TATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTC
* **
15102313 GCAAAACGCAAATAAGGAATTAGTTACACCACGTGGAGAAATTGCAACTAAAAAAAACT-TTATA
323 GCAAAACGCAAATAAGGAATGAGTTACACCACGTGGAGAAAACGCAACTAAAAAAAA-TATTATA
* * * *
15102377 TGAAATAAAATGGGAGCGGTGCAGCACGTGGACTTCCTAGGAGGTCACCCATCGTAGTACTACAC
387 TGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATC-TAGTACTACTC
* *
15102442 TCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGTATTAGTTCTAGTATGATCGC
451 TCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGCATTAGTGCTAGTATGATCGC
* * * *
15102507 ACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCCGCCCCTTATCGCACTTTTGCCTCGAAT
516 ACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAATTGTGCCTCGAAT
* *
15102572 TTGAATGCAAATTCTACCAAATAAC
581 TTGAATGCAAATTCGACCAAATATC
* *
15102597 GTTTCAAATT-TTTATTTCGCAAAACGTAAATAATGAAAT-AGTTACACCACGTGGAGAAAATGC
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGGAGAAAATGC
* * * **
15102660 AACTAAAAAAACT-TTATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCAAAAGAGGTC
65 AACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTC
* * * * * * *
15102724 ACCCATCGTAGTACTAATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAATTA-GATTCGGTGT
130 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTCTAA-TAGGATCCGGTGA
* * **
15102788 ATTTGTGCTGGTATGATCGCACCCGTCAACTTTTGCGCAATCTATTTATATAAAGGCTAACCCTT
194 ATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTT
* * * * *
15102853 ATCGCACTTGCGCCTTGAATTTTAATGCCAATTCGACCAAATATCGTTTCAAATTATTAAATTTT
259 ATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT-TATTTC
* *
15102918 G-AAAACGCAAATAACGAATGAGTTACGCCACGTGGAGAAAACGCAACT-AAAAAAATATTATAT
323 GCAAAACGCAAATAAGGAATGAGTTACACCACGTGGAGAAAACGCAACTAAAAAAAATATTATAT
* *
15102981 GAAATAAACTGGGAGGGGTGCAACACGAGGACTT-CTCAGGAGGTCACCCATC--CTACTACTCT
388 GAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCT-AGGAGGTCACCCATCTAGTACTACTCT
* * *
15103043 CGCCCAAACACGCTTAACTGCGGAGTTCTGAT-GAGATTCGGTGCATTAGTGCTGGTATGATCGC
452 CGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGA-ATCCGGTGCATTAGTGCTAGTATGATCGC
** * * * *
15103107 ACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCTCTGATCGCAGTTGCGCCTCGAAT
516 ACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAATTGTGCCTCGAAT
15103172 TTGAATGCAAATTCGACCAAATATC
581 TTGAATGCAAATTCGACCAAATATC
* * *
15103197 GTTTCATATTATTTATTTCGCATAACGCAAATAACGAATGAGTTACACCACGTGGGGAAAATGCA
1 GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA
15103262 ACT--AAAAAATATTATATGAAATAAAATGGGAGGG
66 ACTAAAAAAAATATTATATGAAATAAAATGGGAGGG
15103296 NNNNNNNNNN
Statistics
Matches: 1164, Mismatches: 117, Indels: 52
0.87 0.09 0.04
Matches are distributed among these distances:
599 8 0.01
600 177 0.15
601 49 0.04
602 5 0.00
603 73 0.06
604 540 0.46
605 57 0.05
606 252 0.22
607 3 0.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (605 bp):
GTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA
ACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCA
CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTCTAATAGGATCCGGTGAAT
TAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTAT
CGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCA
AAACGCAAATAAGGAATGAGTTACACCACGTGGAGAAAACGCAACTAAAAAAAATATTATATGAA
ATAAAATGGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCTAGTACTACTCTCGCC
CAAGCACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGCATTAGTGCTAGTATGATCGCACCCG
TCAACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAATTGTGCCTCGAATTTGAA
TGCAAATTCGACCAAATATC
Found at i:15118513 original size:302 final size:302
Alignment explanation
Indices: 15117416--15120120 Score: 3409
Period size: 302 Copynumber: 9.0 Consensus size: 302
15117406 AAAAAACTGC
* * * *
15117416 GGAGGTCACCCATCGTAGTACTACACTAGCCCAAGCACGCTTAACTACGGAGTTCTGATG-GAAT
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAG-AT
* * * * *
15117480 CCGGTGTATTAGTACTAGTACGATCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCC
65 CCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
** * *
15117545 GCCCCTTATCGCACTTTTGCCTCGAATTTGACTGCAAATTCTACCAAATAACGTTTCAAATT-TT
130 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT
* *
15117609 TATTTCGCAAAACGTAAATAATGAAAT-AGTTACACCACGTGGAGAAAATGCAACTAAAAAAACT
195 TATTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-T
* * **
15117673 -TTATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCAAA
258 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * * * * * * *
15117717 AGAGGTCACCCATCGTAGTACTAATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAATTAGATT
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
* * * * *
15117782 CGGTGTATTTGTGCTGGTATGATCGCACCCGTCAACTTTTGCGCAATCTATTTATATAAAGGCTA
66 CGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTG
* * * *
15117847 ACCCTTATCGCACTTGCGCCTTGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTA
131 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT-
* * * *
15117912 AATTTTG-AAAACGCAAATAACGAATGAGTTACGCCACGTGGAGAAAACGCAACTAAAAAAATAT
195 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATAT
* *
15117976 TATATGAAATAAACTGGGAGGGGTGCAACACGAGGACTTCTCA
260 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* *
15118019 GGAGGTCACCCATCC---TACTACTCTCGCCCAAACACGCTTAACTGCGGAGTTCTGATGAGATT
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
* * *
15118081 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTA
66 CGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT-
* * * * *
15118146 G-CTCTTATCGCAGTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCATATTATT
130 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT
* * *
15118210 TATTTCGCATAACGCAAATAACGAATGAGTTACACCACGTGGGGAAAGTGCAACTAAAAAAATAT
195 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATAT
*
15118275 TATATGAAATAAAATGGGAGGGGTGTAACACGAGGACTTCCCA
260 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * *
15118318 GGAGGTCACCCATCCTAGTACTACTCTAGCCCAAGCACGCTGAACTGCGGAGTTCTGATGGGATC
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
* * * * ** * * *
15118383 CGATGCATTAGTGCAAGTATGATCGCACCCGTCAACTCTTGTGCAAGCTATTCGTATAAATGTTA
66 CGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTG
* * * * *
15118448 CCCCTTATTGCATTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTAAAATTATTT
131 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTT
* ***
15118513 ATTTCGCAAAACACAAATAACGAATGAGTTACACGTTGT-GATGAAAATGCAACTAAAAAAA-AT
196 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGA-GAAAATGCAACTAAAAAAATAT
*
15118576 TATATGAAATAAATTGGGAGGGGTGCAACACGAGGACTTCCCA
260 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * *
15118619 GGAGGTCACCCATCCTAGTACTACTCTCGCCCATGGACGCTTAACAGCGGAGTTCTGATGAGATC
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
* * *
15118684 TGGTGCATTAATGCT-GTTATGATCGCACCCGCCAACTCTTGCGCAATCTATTTATATAAAGGCT
66 CGGTGCATTAGTGCTAG-TATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* ** ** * *
15118748 GCCCCTTATCGCCCTTGCATCTCGAATTTGAATTTAAATTCGACCAAATAACTTTTCAAATTAGT
130 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT
* * *
15118813 TATTTCGCAAAACGCAAATAACGAATTAGTTTCACCACGTGGAGAAATTGCAACTAAAAAAA-AC
195 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATA-
** *
15118877 TTTATATGAAATAAAATGGGAGACGTGCAACACGTGGACTTCCCA
259 -TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * * * * * * **
15118922 AGAGGTCACCCATCTTAGTATTACTCTTGCCCAAGCATGGTTAACTACAAAGTTCTGATG-GAAT
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAG-AT
* ** * * * * *
15118986 CTGGTGTTTTAGTACTAGTATGATCGCACCCGTCAACTCGTGTGCAATTTATTTATATAAAGGCC
65 CCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* ** * *
15119051 GCCCCTTATCGGACTTTTGCCTCGAATTTGAATGCAAATTCTAACAAATAACGTTTCAAATTATT
130 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT
* * ** *
15119116 TATTTCACAAAATGCAAATAACGAATTTGTTACACCACGTAGAGAAAATGCAACTAAAAAAACT-
195 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-TA
* * ** *
15119180 TTATAAGAAATAAAATGGGAAGGGTGCAACATTAGGACTTCCAA
259 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * * * * * *
15119224 AGAGGTGACCCATCCTAATACTACTCTCGCCCATGGACGCTTAACAGTGGAGTTCTGATGAGATC
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
* * * *
15119289 TGGTGCAGTAATGCT-GTTACGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
66 CGGTGCATTAGTGCTAG-TATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* ** *
15119353 GCCCCTTATCGCCCTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAACTTTTCAAATTATT
130 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT
* * *
15119418 TATTTCGCAAAACGCAAAATAAGGAATTAGTTACACCACGTGGAGAAATTGCAACTAAAAAAA-A
195 TATTTCGCAAAACGC-AAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATA
* * * *
15119482 CTTTATATGAAATCAAATGGGAGCGGTGCAACACGTGGACTTCCTA
259 --TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* *
15119528 GGAGGTCACCCATCGTAGTACTACACTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG-GAAT
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAG-AT
* * * *
15119592 CCGGTGTATTAGTACTAGTATGATCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCC
65 CCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* ** *
15119657 GCCCCTTATCGCCCTTTTGCCTCGAATTTGAATGCAAATTCTACCAAATAACGTTTCAAATTATT
130 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT
*
15119722 TATTTCGCAAAACGTAAATAACGAAAT-AGTTACACCACGTGGAGAAAATGCAACTAAAAAAACT
195 TATTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-T
* * **
15119786 -TTATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCAAA
258 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
** * * * * * * *
15119830 ATAGGTCACCCATCGTAGTACTAATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAATCAAATC
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
* * *
15119895 CGGTGCATTTGTGCTGGTATGATCGCACCCGTCAACTTTTGCGCAATCTATTTATATAAAGGCTG
66 CGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTG
* * * * * *
15119960 ACCCTTATCGCACTTGCACCTTGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTACTA
131 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTA-TT
* * *
15120025 AATTT-TCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAACGCAACTAAAAAAATAT
195 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATAT
15120089 TATATGAAATAAAATGGGAGGGGTGCAACACG
260 TATATGAAATAAAATGGGAGGGGTGCAACACG
15120121 NNNNNNNNNN
Statistics
Matches: 2072, Mismatches: 297, Indels: 69
0.85 0.12 0.03
Matches are distributed among these distances:
298 5 0.00
299 264 0.13
300 1 0.00
301 432 0.21
302 799 0.39
303 349 0.17
304 221 0.11
305 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (302 bp):
GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
CGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTG
CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTT
ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATT
ATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
Found at i:15119743 original size:606 final size:603
Alignment explanation
Indices: 15117417--15120120 Score: 3491
Period size: 606 Copynumber: 4.5 Consensus size: 603
15117407 AAAAACTGCG
* * *
15117417 GAGGTCACCCATCGTAGTACTACACTAGCCCAAGCACGCTTAACTA-CGGAGTTCTGATG-GAAT
1 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-AGCGGAGTTCTGATGAG-AT
* * * * * * * *
15117480 CCGGTGTATTAGTACTAGTACGATCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCC
64 CTGGTGCATTAATGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
*** * *
15117545 GCCCCTTATCGCACTTTTGCCTCGAATTTGACTGCAAATTCTACCAAATAACGTTTCAAATT-TT
129 GCCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT
* * *
15117609 TATTTCGCAAAACGTAAATAATGAAATAGTTACACCACGTGGAGAAAATGCAACTAAAAAAACTT
194 TATTTCGCAAAACGCAAATAACGAATTAGTTACACCACGTGGAGAAAATGCAACTAAAAAAACTT
* * **
15117674 TATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCAAAAGAGGTCACCCATCGTAGTACT
259 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCGTAGTACT
* * * * * * * *
15117739 A-ATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAAT-TAGATTCGGTGTATTTGTGCTGGTAT
324 ACA-CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGA-ATCCGGTGTATTAGTACTAGTAT
* * * * *
15117802 GATCGCACCCGTCAACTTTTGCGCAATCTATTTATATAAAGGCTAACCCTTATCGCACTTGCGCC
387 GATCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCCACCCCTTATCGCACTTTCGCC
* * * * *
15117867 TTGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTAAATTTTG-AAAACGCAAATA
452 TCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT-TATTTCGCAAAACGCAAATA
* * * *
15117931 ACGAATGAGTTACGCCACGTGGAGAAAACGCAACTAAAAAAATATTATATGAAATAAACTGGGAG
516 ACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAT-TTATAAGAAATAAAATGGGAG
*
15117996 GGGTGCAACACGAGGACTTCTC-AG
580 GGGTGCAACACGAGGACTTC-CAAA
* *
15118020 GAGGTCACCCATCC---TACTACTCTCGCCCAAACACGCTTAACTGCGGAGTTCTGATGAGAT-T
1 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACAGCGGAGTTCTGATGAGATCT
* * *
15118081 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTA
66 -GGTGCATTAATGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT-
* * * *
15118146 G-CTCTTATCGCAGTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCATATTATT
129 GCCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT
* * * *
15118210 TATTTCGCATAACGCAAATAACGAATGAGTTACACCACGTGGGGAAAGTGCAACTAAAAAAA-TA
194 TATTTCGCAAAACGCAAATAACGAATTAGTTACACCACGTGGAGAAAATGCAACTAAAAAAACT-
* * *
15118274 TTATATGAAATAAAATGGGAGGGGTGTAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
258 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCGTAGTAC
* * * * * * * *
15118339 TACTCTAGCCCAAGCACGCTGAACTGCGGAGTTCTGATGGGATCCGATGCATTAGTGCAAGTATG
323 TACACTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGTATTAGTACTAGTATG
* ** * ** *
15118404 ATCGCACCCGTCAACTCTTGTGCAAGCTATTCGTATAAATGTTACCCCTTATTGCA-TTTGCGCC
388 ATCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCCACCCCTTATCGCACTTT-CGCC
* * * *
15118468 TCGAATTTGAATGCAAATTCGACCAAATATCATTTAAAATTATTTATTTCGCAAAACACAAATAA
452 TCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAA
*** * * *
15118533 CGAATGAGTTACACGTTGT-GATGAAAATGCAACTAAAAAAAATTATATGAAATAAATTGGGAGG
517 CGAATGAGTTACACCACGTGGA-GAAAATGCAACTAAAAAAATTTATAAGAAATAAAATGGGAGG
* *
15118597 GGTGCAACACGAGGACTTCCCAG
581 GGTGCAACACGAGGACTTCCAAA
* *
15118620 GAGGTCACCCATCCTAGTACTACTCTCGCCCATGGACGCTTAACAGCGGAGTTCTGATGAGATCT
1 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACAGCGGAGTTCTGATGAGATCT
* *
15118685 GGTGCATTAATGCTGTTATGATCGCACCCGCCAACTCTTGCGCAATCTATTTATATAAAGGCTGC
66 GGTGCATTAATGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGC
* * ** * *
15118750 CCCTTATCGCCCTTGCATCTCGAATTTGAATTTAAATTCGACCAAATAACTTTTCAAATTAGTTA
131 CCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTA
* *
15118815 TTTCGCAAAACGCAAATAACGAATTAGTTTCACCACGTGGAGAAATTGCAACTAAAAAAAACTTT
196 TTTCGCAAAACGCAAATAACGAATTAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAACTTT
** * * *
15118880 ATATGAAATAAAATGGGAGACGTGCAACACGTGGACTTCCCAAGAGGTCACCCATCTTAGTATTA
260 ATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCGTAGTACTA
* * * * * ** * *
15118945 CTCTTGCCCAAGCATGGTTAACTACAAAGTTCTGATGGAATCTGGTGTTTTAGTACTAGTATGAT
325 CACTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGTATTAGTACTAGTATGAT
* * * * *
15119010 CGCACCCGTCAACTCGTGTGCAATTTATTTATATAAAGGCCGCCCCTTATCGGACTTTTGCCTCG
390 CGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCCACCCCTTATCGCACTTTCGCCTCG
* * * *
15119075 AATTTGAATGCAAATTCTAACAAATAACGTTTCAAATTATTTATTTCACAAAATGCAAATAACGA
455 AATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
** * *
15119140 ATTTGTTACACCACGTAGAGAAAATGCAACTAAAAAAACTTTATAAGAAATAAAATGGGAAGGGT
520 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-TTTATAAGAAATAAAATGGGAGGGGT
**
15119205 GCAACATTAGGACTTCCAAA
584 GCAACACGAGGACTTCCAAA
* * * * *
15119225 GAGGTGACCCATCCTAATACTACTCTCGCCCATGGACGCTTAACAGTGGAGTTCTGATGAGATCT
1 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACAGCGGAGTTCTGATGAGATCT
* * *
15119290 GGTGCAGTAATGCTGTTACGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGC
66 GGTGCATTAATGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGC
* * ** *
15119355 CCCTTATCGCCCTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAACTTTTCAAATTATTTA
131 CCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTA
* *
15119420 TTTCGCAAAACGCAAAATAAGGAATTAGTTACACCACGTGGAGAAATTGCAACTAAAAAAAACTT
196 TTTCGCAAAACGC-AAATAACGAATTAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAACTT
* * * * *
15119485 TATATGAAATCAAATGGGAGCGGTGCAACACGTGGACTTCCTAGGAGGTCACCCATCGTAGTACT
259 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCGTAGTACT
15119550 ACACTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGTATTAGTACTAGTATGA
324 ACACTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGTATTAGTACTAGTATGA
* * *
15119615 TCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCCGCCCCTTATCGCCCTTTTGCCTC
389 TCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCCACCCCTTATCGCACTTTCGCCTC
* *
15119680 GAATTTGAATGCAAATTCTACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGTAAATAACG
454 GAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAACG
15119745 AAAT-AGTTACACCACGTGGAGAAAATGCAACTAAAAAAACTTTATAAGAAATAAAATGGGAGGG
519 -AATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-TTTATAAGAAATAAAATGGGAGGG
* *
15119809 GTGCAACATGAGGACTTCAAAA
582 GTGCAACACGAGGACTTCCAAA
* * * * ** * * * *
15119831 TAGGTCACCCATCGTAGTACTAATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAATCAAATCC
1 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACAGCGGAGTTCTGATGAGATCT
** * *
15119896 GGTGCATTTGTGCTGGTATGATCGCACCCGTCAACTTTTGCGCAATCTATTTATATAAAGGCTGA
66 GGTGCATTAATGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGC
* * * **
15119961 CCCTTATCGCACTTGCACCTTGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTACTAA
131 CCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTA-TTT
* * *
15120026 ATTT-TCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAACGCAACTAAAAAAA-TAT
195 ATTTCGCAAAACGCAAATAACGAATTAGTTACACCACGTGGAGAAAATGCAACTAAAAAAACT-T
15120089 TATATGAAATAAAATGGGAGGGGTGCAACACG
259 TATATGAAATAAAATGGGAGGGGTGCAACACG
15120121 NNNNNNNNNN
Statistics
Matches: 1844, Mismatches: 231, Indels: 51
0.87 0.11 0.02
Matches are distributed among these distances:
599 1 0.00
600 211 0.11
601 303 0.16
602 1 0.00
603 217 0.12
604 293 0.16
605 279 0.15
606 531 0.29
607 8 0.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (603 bp):
GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACAGCGGAGTTCTGATGAGATCT
GGTGCATTAATGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGC
CCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTA
TTTCGCAAAACGCAAATAACGAATTAGTTACACCACGTGGAGAAAATGCAACTAAAAAAACTTTA
TATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCGTAGTACTAC
ACTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGTATTAGTACTAGTATGATC
GCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCCACCCCTTATCGCACTTTCGCCTCGA
ATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAA
TGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATTTATAAGAAATAAAATGGGAGGGGTGC
AACACGAGGACTTCCAAA
Found at i:15121428 original size:302 final size:301
Alignment explanation
Indices: 15120874--15122240 Score: 1715
Period size: 302 Copynumber: 4.5 Consensus size: 301
15120864 NNNNNNNNNN
* * *
15120874 CACTTGTGCCTCGAATTTGAATGCAAATTCAACCAAATATCGATTCAAATTATTTATTTCGCAAA
1 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAA
*** * *
15120939 ACGCAAATAACGAATGAGTTACACGTTGTGAAGAAAATGCAACTAAAAAAAATTATATGAAATAA
66 ACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATTTATATGAAATAA
* * * ** *
15121004 ATTGGGAGGGTTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTGTCGCCCAT
131 AATGGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACACTCGCCCAA
* * * * * * *
15121069 GGACGCTTAACA-GTGGAGTTCTGATGAGATCTGGTGCAGTAATGCTGTTACGATCGCACCCGTC
196 GCACGCTTAA-ATGCGGAGTTCTGATGAGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
**
15121133 AACTCTTGCGCAATCTATTTATATAAATACTGCCCCTTATCG
260 AACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCG
* ** * *
15121175 CCCTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAA
1 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAA
* * * * *
15121240 ATGCAAATAAGGAATTAGTTACACCACGAGGAGAAATTGCAACTAAAAAAAACTTTATATGAAAT
66 ACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAA-TTTATATGAAAT
* * *
15121305 AAAATGGGA-TGGTGCAACACGTGGACTTCCTAGGAGGTCACCCATCGTAGTACTACACTCGCCC
129 AAAATGGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACACTCGCCC
* * * * *
15121369 AAGCACGCTTAAATGCGGAGTTCCGATG-GAATCCGGTGTATTAGTACTAGTAGGATCGCACCCG
194 AAGCACGCTTAAATGCGGAGTTCTGATGAG-ATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * * *
15121433 TCAACTCTTGTGCAATCTATTTGTATAAAGCCCGCCCCTTATCG
258 TCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCG
** * *
15121477 CACTTTTGCCTCGAATTTGAATGCAAATTCTACCAAATAACGTTTCAAATTATTTATTTCGCAAA
1 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAA
* * *
15121542 ACGTAAATAACAAAAT-AGTTACACCACGTGGAGAAAATGCAACTAAAAAAACTTTATAAGAAAT
66 ACGCAAATAAC-GAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-TTTATATGAAAT
* * ** * *
15121606 AAAATGGGAGGGGTGCAACATGAGGAATTCAAAAGAGGTCACCCATCGTAGTACTA-ATCTCGCC
129 AAAATGGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACA-CTCGCC
* * * * *
15121670 CAAGCACGC-TAAATTACGGAGTTCTAATTAGATCCGGTGCATTTGTGCTGGTATGATCGCACCT
193 CAAGCACGCTTAAA-TGCGGAGTTCTGATGAGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* * *
15121734 GTCAACTTTTGCGCAATCTATTTATATAAAGGCTGACCCTTATCC
257 GTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCG
* * * * *
15121779 CACTTGCGCCTTGAATTTTAATGCAAATTTGACCAAATATCGTTTCAAATTATTAAATTT-TCAA
1 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT-TATTTCGCAA
**
15121843 AACGCAAATAACGAATGAGTTACACCACGTGGAGAAAACACAACTAAAAAAATATTATATGAAAT
65 AACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAT-TTATATGAAAT
* * *
15121908 AAACTTGGAGGGGTGCAACACGAGGACTT-CTCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
129 AAAATGGGAGGGGTGCAACACGAGGACTTCCT-AGGAGGTCACCCATCCTAGTACTACACTCGCC
* * * * * * * *
15121972 CAAACAGGCTTAACTGCGGATTTCTGATGGGATTCAGTGCATTAGTGCTGGTATGATCACACCCG
193 CAAGCACGCTTAAATGCGGAGTTCTGATGAGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
** * * * *
15122037 TCAACTCTTGAACAATCTATTCATATAAAGGCTACCTCTTATTG
258 TCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCG
* * * *
15122081 CAGTTGCGGCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCATATTATTTATTTCGCATA
1 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAA
*
15122146 ACGCAAATAACGAATGAGTTACACCACGTGGGGAAAATGCAACTAAAAAAATATTATATGAAATA
66 ACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAT-TTATATGAAATA
15122211 AAATGGGAGGGGTGCAACACGAGGACTTCC
130 AAATGGGAGGGGTGCAACACGAGGACTTCC
15122241 NNNNNNNNNN
Statistics
Matches: 909, Mismatches: 140, Indels: 32
0.84 0.13 0.03
Matches are distributed among these distances:
301 135 0.15
302 743 0.82
303 31 0.03
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (301 bp):
CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAA
ACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATTTATATGAAATAA
AATGGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACACTCGCCCAA
GCACGCTTAAATGCGGAGTTCTGATGAGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
ACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCG
Found at i:15124917 original size:300 final size:301
Alignment explanation
Indices: 15124248--15125356 Score: 1672
Period size: 302 Copynumber: 3.7 Consensus size: 301
15124238 NNNNNNNNNN
* * *
15124248 ACAAAACGCAAATAACGATTGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAACATTATAT
1 ACAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAATATTATAT
15124313 GAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT
65 GAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT
15124378 CGCCCAAGAACGTTTAACTACGGCGTGTTGATAGGATCCGGTGCATTAGTGCTGGTATGATCGCA
130 CGCCCAAGAACGTTTAACTACGGCGTGTTGATAGGATCCGGTGCATTAGTGCTGGTATGATCGCA
*
15124443 CTCGTCAACTATTGCGCAATCCATTCATATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAATT
195 CTCGTCAACTCTTGCGCAAT-CATTCATATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAATT
15124508 TGAAAGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTC
259 TGAAAGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTC
*
15124551 GCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATTATATG
1 ACAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATTATATG
*
15124616 AAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC
66 AAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC
*
15124681 GCCCAAGAACGTTTAACTACGGCGTGGTGATAGGATCCGGTGCATTAGTGCTGGTATG-TCGCAC
131 GCCCAAGAACGTTTAACTACGGCGTGTTGATAGGATCCGGTGCATTAGTGCTGGTATGATCGCAC
* *
15124745 TCGTCAACTCTTGCGCAATACATTCATATAAAGG-TGCCCCTTATCACACTTGCACCTAGAATTT
196 TCGTCAACTCTTGCGCAAT-CATTCATATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAATTT
15124809 GAAAGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTC
260 GAAAGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTC
* *
15124851 ACAAAACGCAAATAACGAATGAGTTACTCCCCGTGGAGAAAATGCAACTAAAAAAATATTATATG
1 ACAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATTATATG
* * * * * *
15124916 AAATAAAATGGGATGGGTGCAACACGAGGACTTCCCGGGATGTCACCCACCCTAGTAATCCTCTC
66 AAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC
* * * *
15124981 GCCCAAGGATGCTTAAC-AGCGGCGT-TTGAATGGGATCCGGTGCATTAGTGCTGGTATGATCGC
131 GCCCAAGAACGTTTAACTA-CGGCGTGTTG-ATAGGATCCGGTGCATTAGTGCTGGTATGATCGC
* * *
15125044 AC-CTGTCAACTCTTGCGCAATCTATTCACATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAA
194 ACTC-GTCAACTCTTGCGCAATC-ATTCATATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAA
* * * *
15125108 TTTGAATGCAAATTTGACCAAATATTGTTTCTAATTATTTATTTC
257 TTTGAAAGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTC
** * * * *
15125153 GGACAACGCAAAAAACGAATGAGTTACACCACGTGGAAAAAATGCAGCTAAAAAAATTATTATAT
1 ACAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-TATTATAT
* * * * *
15125218 GAAATAAAATGGAAGGGGTGAAACACGAGGACTTCCCAGGAGGTCACCTATCCTAGTACAACTCA
65 GAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT
* * * * * *
15125283 CGCCCAAGCACGTTTAACTGCGGAGT-TCTGATGGGATCCGGTGTATTAGTGCTGGTATGAGCGC
130 CGCCCAAGAACGTTTAACTACGGCGTGT-TGATAGGATCCGGTGCATTAGTGCTGGTATGATCGC
* *
15125347 AATTGTCAAC
194 ACTCGTCAAC
15125357 AATTGNNNNN
Statistics
Matches: 736, Mismatches: 60, Indels: 20
0.90 0.07 0.02
Matches are distributed among these distances:
299 3 0.00
300 242 0.33
301 73 0.10
302 248 0.34
303 168 0.23
304 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (301 bp):
ACAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATTATATG
AAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC
GCCCAAGAACGTTTAACTACGGCGTGTTGATAGGATCCGGTGCATTAGTGCTGGTATGATCGCAC
TCGTCAACTCTTGCGCAATCATTCATATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAATTTG
AAAGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTC
Found at i:15136466 original size:303 final size:303
Alignment explanation
Indices: 15135362--15138556 Score: 4054
Period size: 304 Copynumber: 10.6 Consensus size: 303
15135352 NNNNNNNNNN
15135362 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
* * *
15135427 AAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGACATCCCAGGAGGTCACCCACCC
66 AAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCC
*
15135492 TAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCT
131 TAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCT
*
15135557 GGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCACCTTATCGCACTT
196 GGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTT
15135622 GCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
261 GCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* * *
15135665 ATTAGTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAACT
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAA-A
*
15135730 AAAAACATTATATGAAATAAAATGGTAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
65 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* * *
15135795 CGAGTACTACTCTTGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGCATTAGTGC
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
15135860 TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTC--AT--A---------TTATCGCACT
195 TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
* *
15135912 TGCGCCTCGAATTGAAATGCAAATTCGACCAAATATCGTTTTAA
260 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
*
15135956 ATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGATG-AAATGCAACTAAA
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGA-GAAAATGCAACTAAA
* * *
15136020 TAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGTGGACTTCCCAGGAGATCACCCAT
65 -AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* * * *
15136085 CCTAGTACTACTCTCGCCCATGCATGCTTAAATGTGGAGTTCTGATGGGATCCGGTGCATTAGTG
129 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
*
15136150 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATGAAGGCTGCCCCTTATCGCAC
194 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
*
15136215 TTGCACCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
259 TTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* * * *
15136260 GTTATTTATTTCACAAAACAAAAATAACCAATGAGTTACACCACGTCGAGAAAATACAACTAAAA
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
*
15136325 AAAACATTATATGAAATAAAATGGGAGGGGTGCAGCACGAGGACTTCCCAGGAGGTCACCCATCC
66 AAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCC
* * *
15136390 TAGTACGACACTCGCCGC-AGCACGCTTAACTGCGGAGTTCTGATTGGATCCGGTGCATTAGTGC
131 TAGTACTACTCTCGCC-CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
* * *
15136454 TGGTATGATCGCACCCGTCAACTTTTGCGCAATCTAATCATATAAAGGCCGCCCCTTATCGCACT
195 TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
*
15136519 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCATTTCAA
260 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* * *
15136563 GTTATTTATTTCACAAAA-TACAAATAACGAATGAGTTACACCACGTCGAGAAAATACAACTAAA
1 ATTATTTATTTCACAAAACGA-AAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAA
* * *
15136627 AAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGTGGACTTCCCAGGAGATCACCCATC
65 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
15136692 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
* *
15136757 TGGTAGGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCCCT
195 TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
* *
15136822 TGCGCCTCGAATTTAAACGCAAATTCGACCAAATATCGTGTCAA
260 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
*
15136866 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAT
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
15136931 AAAACATTATATGAAATAAAATGGGAGGGGGTGC-ACACGA-GACTTCCCA-GA-GTCA-CCATC
66 AAAACATTATATGAAATAAAATGGGA-GGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
************************************************
15136991 CTAGTACTACTCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
130 CTAGTACTACTCTCG--CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
**************************************************
15137056 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT-CTTTCGCACTCT
193 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGC---C-C-CT-T
* *** * * * * * *** *
15137120 ATTCGTAAAAAGGCTGCC-C---CTT--ATCGC-ACTTGCGCCTCGAATTTAAATGCAA
252 A-TCG--CACTTGC-GCCTCGAATTTAAAT-GCAAATT-CGAC-CAAATATCGTTTCAA
* *
15137172 ATTATGTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCAAGAAAATGCAACTAAAT
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAA-
* * * *
15137237 AAAAACATTATCTGAAATAAAATGGGAAGGGTGCAACACGAGGACTTTCCAGGGGGTCACCCATC
65 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
*
15137302 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAAGGGATCCGGTGCATTAGTGC
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
* * * *
15137367 TGGAATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAAATAAAGGCTGACCCTTATCGCCCT
195 TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
* *
15137432 TGCGCCTCGAATTTAAACGCAAATTCGACCAAATATCGTGTCAA
260 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
15137476 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAT
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAA-
15137541 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
65 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* *
15137606 CTAGTACTACTCTCGCCCAAGCACCCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGC
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
* *
15137671 TGGTATGATCGCACCCGTCAACTCTTGCGCACTCTATTCATAAAAAGGCTGCCCCTTATCGCACT
195 TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
* *
15137736 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCATTCCAA
260 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* * *
15137780 GTTATGTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCAAGAAAATGCAACTAAAT
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAA-
* * * *
15137845 AAAAACATTATCTGAAATAAAATGGGAAGGGTGCAACACGAGGACTTTCCAGGGGGTCACCCATC
65 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
*
15137910 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAAGGGATCCGGTGCATTAGTGC
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
* * *
15137975 TGGAATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCCTGTCGCACT
195 TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
* * * * *
15138040 TCCACCTCGAGTATAAATGCAAATTCGGCCAAATATCGTTTCAA
260 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* *
15138084 ATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAGA
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
* * * *
15138149 AAAAGATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGACATCCCAGGAGGTCACCCACCC
66 AAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCC
15138214 TAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCT
131 TAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCT
* * *
15138279 GGTAGGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCACCTTATCGCAATT
196 GGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTT
* *
15138344 GCGCCTAGAATTTAAATGGAAATTCGACCAAATATCGTTTCAA
261 GCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* * * *
15138387 ATTATTTATTTCACAAAACGCAAATAACGAATGATTTACACCACGTCAAGAAAAGGCAACTAAAT
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAA-
*
15138452 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACAAGGACTTCCCAGGAGGTCACCCATC
65 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* * *
15138517 CTAGTACTACTCTCGCCCTAGCACGTTTAACTACGGAGTT
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTT
15138557 NNNNNNNNNN
Statistics
Matches: 2449, Mismatches: 391, Indels: 103
0.83 0.13 0.03
Matches are distributed among these distances:
291 270 0.11
292 1 0.00
293 2 0.00
295 1 0.00
299 20 0.01
300 8 0.00
301 7 0.00
302 13 0.01
303 934 0.38
304 1018 0.42
305 14 0.01
306 85 0.03
307 35 0.01
308 8 0.00
309 6 0.00
310 7 0.00
311 20 0.01
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.24
Consensus pattern (303 bp):
ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
AAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCC
TAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCT
GGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTT
GCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
Found at i:15138521 original size:607 final size:607
Alignment explanation
Indices: 15135362--15138556 Score: 4178
Period size: 607 Copynumber: 5.3 Consensus size: 607
15135352 NNNNNNNNNN
*
15135362 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAA-
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCAAGAAAATGCAACTAAAT
* * *
15135426 AAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGACATCCCAGGAGGTCACCCACC
66 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
*
15135491 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGC
131 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
*
15135556 TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCACCTTATCGCACT
196 TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
* *
15135621 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTAGTTATTTCACAAAACGC
261 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAACGA
15135686 AAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAACTAAAAACATTATATGAAATAAA
326 AAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAA-TAAAAACATTATATGAAATAAA
* * *
15135751 ATGGTAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCGAGTACTACTCTTGCCCAAG
390 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
*
15135816 CACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
455 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
*
15135881 CTCTTGCGCAATCTATTCAT----A---------TTATCGCACTTGCGCCTCGAATTGAAATGCA
520 CTCTTGCGCAATCTATTCATAAAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCA
*
15135933 AATTCGACCAAATATCGTTTTAA
585 AATTCGACCAAATATCGTTTCAA
* *
15135956 ATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGATG-AAATGCAACTAAA
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTC-AAGAAAATGCAACTAAA
* * *
15136020 TAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGTGGACTTCCCAGGAGATCACCCAT
65 TAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* * * *
15136085 CCTAGTACTACTCTCGCCCATGCATGCTTAAATGTGGAGTTCTGATGGGATCCGGTGCATTAGTG
130 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
*
15136150 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATGAAGGCTGCCCCTTATCGCAC
195 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* * *
15136215 TTGCACCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAGTTATTTATTTCACAAAACA
260 TTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAACG
* * *
15136280 AAAATAACCAATGAGTTACACCACGTCGAGAAAATACAACTAAAAAAAACATTATATGAAATAAA
325 AAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAATAAAAACATTATATGAAATAAA
* * *
15136345 ATGGGAGGGGTGCAGCACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACGACACTCGCCGC-A
390 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC-CAA
*
15136409 GCACGCTTAACTGCGGAGTTCTGATTGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
454 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * *
15136474 ACTTTTGCGCAATCTAATCATATAAAGGCCGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGC
519 ACTCTTGCGCAATCTATTCATAAAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGC
*
15136539 AAATTCGACCAAATATCATTTCAA
584 AAATTCGACCAAATATCGTTTCAA
* * * *
15136563 GTTATTTATTTCACAAAA-TACAAATAACGAATGAGTTACACCACGTCGAGAAAATACAACTAAA
1 ATTATTTATTTCACAAAACGA-AAATAACGAATGAGTTACACCACGTCAAGAAAATGCAACTAAA
* * *
15136627 -AAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGTGGACTTCCCAGGAGATCACCCAT
65 TAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
15136691 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
130 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
* *
15136756 CTGGTAGGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCCC
195 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* *
15136821 TTGCGCCTCGAATTTAAACGCAAATTCGACCAAATATCGTGTCAAATTATTTATTTCACAAAACG
260 TTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAACG
15136886 AAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAA-ATAAAACATTATATGAAATAA
325 AAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAATA-AAAACATTATATGAAATAA
15136950 AATGGGAGGGGGTGC-ACACGA-GACTTCCCA-GA-GTCA-CCATCCTAGTACTACTCTCGNNNN
389 AATGGGA-GGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG----
****************************************
15137010 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
449 -------------------------CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
******************************* * * *
15137075 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTTCGCACTCTATTCGTAAAAAGGCTGCCCC
489 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATAAAAAGGCTGCCCC
15137140 TTATCGCACTTGCGCCTCGAATTTAAATGCAAA-T--------TAT-G------
554 TTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
15137178 ------TATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCAAGAAAATGCAACTAAAT
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCAAGAAAATGCAACTAAAT
* * * *
15137237 AAAAACATTATCTGAAATAAAATGGGAAGGGTGCAACACGAGGACTTTCCAGGGGGTCACCCATC
66 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
*
15137302 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAAGGGATCCGGTGCATTAGTGC
131 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
* * * *
15137367 TGGAATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAAATAAAGGCTGACCCTTATCGCCCT
196 TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
* *
15137432 TGCGCCTCGAATTTAAACGCAAATTCGACCAAATATCGTGTCAAATTATTTATTTCACAAAACGA
261 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAACGA
15137497 AAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAATAAAAACATTATATGAAATAAA
326 AAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT-AATAAAAACATTATATGAAATAAA
15137562 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
390 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
* *
15137627 CACCCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
455 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
*
15137692 CTCTTGCGCACTCTATTCATAAAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCA
520 CTCTTGCGCAATCTATTCATAAAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCA
* *
15137757 AATTCGACCAAATATCATTCCAA
585 AATTCGACCAAATATCGTTTCAA
* *
15137780 GTTATGTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCAAGAAAATGCAACTAAAT
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCAAGAAAATGCAACTAAAT
* * * *
15137845 AAAAACATTATCTGAAATAAAATGGGAAGGGTGCAACACGAGGACTTTCCAGGGGGTCACCCATC
66 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
*
15137910 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAAGGGATCCGGTGCATTAGTGC
131 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
* * *
15137975 TGGAATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCCTGTCGCACT
196 TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
* * * * * *
15138040 TCCACCTCGAGTATAAATGCAAATTCGGCCAAATATCGTTTCAAATTATTTATTTCACAAAACGC
261 TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAACGA
* *
15138105 AAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAGAAAAAGATTATATGAAATAAAA
326 AAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAATAAAAACATTATATGAAATAAAA
* * *
15138170 TAGGAGGGGTGCAACACGAGGACATCCCAGGAGGTCACCCACCCTAGTACTACTCTCGCCCAAGC
391 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
*
15138235 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTAGGATCGCACCCGTCAAC
456 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
* * * * *
15138300 TCTTGCGCAATCTATTCATATAAAGGCTGCACCTTATCGCAATTGCGCCTAGAATTTAAATGGAA
521 TCTTGCGCAATCTATTCATAAAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAA
15138365 ATTCGACCAAATATCGTTTCAA
586 ATTCGACCAAATATCGTTTCAA
* * *
15138387 ATTATTTATTTCACAAAACGCAAATAACGAATGATTTACACCACGTCAAGAAAAGGCAACTAAAT
1 ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCAAGAAAATGCAACTAAAT
*
15138452 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACAAGGACTTCCCAGGAGGTCACCCATC
66 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* * *
15138517 CTAGTACTACTCTCGCCCTAGCACGTTTAACTACGGAGTT
131 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTT
15138557 NNNNNNNNNN
Statistics
Matches: 2251, Mismatches: 269, Indels: 149
0.84 0.10 0.06
Matches are distributed among these distances:
586 65 0.03
587 1 0.00
594 218 0.10
595 287 0.13
598 1 0.00
602 18 0.01
603 4 0.00
604 2 0.00
605 10 0.00
606 320 0.14
607 496 0.22
608 346 0.15
609 53 0.02
610 296 0.13
611 34 0.02
612 10 0.00
613 2 0.00
614 4 0.00
615 20 0.01
622 3 0.00
630 1 0.00
631 60 0.03
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.24
Consensus pattern (607 bp):
ATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCAAGAAAATGCAACTAAAT
AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
TGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAACGA
AAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAATAAAAACATTATATGAAATAAAA
TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
TCTTGCGCAATCTATTCATAAAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAA
ATTCGACCAAATATCGTTTCAA
Found at i:15148857 original size:296 final size:296
Alignment explanation
Indices: 15148314--15149002 Score: 1073
Period size: 296 Copynumber: 2.3 Consensus size: 296
15148304 NNNNNNNNNN
* *
15148314 ACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGGTTAACTGAAGAGTTCTG
1 ACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGGTTAACTGAGGAGTTCTG
*
15148379 ATGGGATCCGGTGCATTACTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATAT
66 ATGGGATCCGGTGCATTAGTGCT-G---GAT--CACCCGTCAACTCTTGCGCAATCTATTCATAT
* * *
15148444 AAAGGCTGCCCCCTGTCGCACTTGCGCCTCGAGTTTAAATGCAAATTCGACAAAATATCGTTTCA
125 AAAGGCTGCCCCCTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACAAAATATCGTTACA
** *
15148509 AGTTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAACTGCAACTAAA
190 AGTTATTTATTTAACAAAACGCAAATAACGAATGAGTTACACCACATCGAGAAACTGCAACT--A
15148574 AAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGG
253 AAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGG
* *
15148618 ACTTCCCAGGAGGTCACCCATCCAAGTACTACTCTCGCCCAAGCACGGTTAACTGCGGAGTTCTG
1 ACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGGTTAACTGAGGAGTTCTG
* *
15148683 ATGGGATCCGGTTCATTAGTGCTGG-T-ACCCGTCAACTCTTGCGCTAT-TCATTCATATAAAGG
66 ATGGGATCCGGTGCATTAGTGCTGGATCACCCGTCAACTCTTGCGCAATCT-ATTCATATAAAGG
* * *
15148745 CTGCCCCTTATCGCAGTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTACTAA-TT
130 CTGCCCCCTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACAAAATATCGTTAC-AAGTT
* *
15148809 GTTTATTTAACAAAACGCAAATAACGAATGAGTTACACCACATCGAGAAAGTGCAACTAAAAAAA
194 ATTTATTTAACAAAACGCAAATAACGAATGAGTTACACCACATCGAGAAACTGCAACTAAAAAAA
*
15148874 CATTATATGAAATAAAATGGGAGGGGTGCAACACGAGG
259 CATTATATGAAATAAAATAGGAGGGGTGCAACACGAGG
*
15148912 ACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC-GCTAACTGAGGAGTTCTG
1 ACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGGTTAACTGAGGAGTTCTG
15148976 ATGGGATCCGGTGCATTAGTGCTGGAT
66 ATGGGATCCGGTGCATTAGTGCTGGAT
15149003 GATCGCACCC
Statistics
Matches: 359, Mismatches: 23, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
293 40 0.11
294 90 0.25
295 1 0.00
296 141 0.39
297 2 0.01
299 1 0.00
300 1 0.00
303 1 0.00
304 82 0.23
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (296 bp):
ACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGGTTAACTGAGGAGTTCTG
ATGGGATCCGGTGCATTAGTGCTGGATCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGC
TGCCCCCTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACAAAATATCGTTACAAGTTAT
TTATTTAACAAAACGCAAATAACGAATGAGTTACACCACATCGAGAAACTGCAACTAAAAAAACA
TTATATGAAATAAAATAGGAGGGGTGCAACACGAGG
Found at i:15150892 original size:308 final size:303
Alignment explanation
Indices: 15150334--15152076 Score: 2430
Period size: 308 Copynumber: 5.7 Consensus size: 303
15150324 NNNNNNNAAT
* *
15150334 GAAAATAACGAATGAGTTAC-TCACGTCGAGAAAATTCAACTAAAAAAAAACA-TATATGAAATA
1 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAAC-AAAAAAAAACATTATATGAAATA
* *
15150397 AAATGGGAGGGGTGC-ACACCAGGACTTCCTCAGGAGGTCGACCCATCCCTAGTACTACTCTCGT
65 AAATGGGAGGGGTGCAACACGAGGACTTCC-CAAGAGGTC-ACCCAT-CCTAGTACTACTCTCG-
* *
15150461 CCCAAGCACGCTTGAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGTACC
126 CCCAAGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
* * *
15150526 GGTCAACTCTTGCGCAATCTATTCATATAAAAGGCTGCCCCTGATTGCACTTGCGCCTCGAATTT
191 CGTCAACTCTTGCGCAACCTATTCATAT-AAAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTT
*
15150591 AAATGCAAATTCGACCCCGAATATCGTTCCAAATTATTTATTTCACAAAAC
255 AAATGCAAATTCGA--CCAAATATCGTTCCAAATTATTTATTTCACAAAAC
* * *
15150642 GAAAATAACGAATGAGTTACACCATGTCGAGAAAATGCAACTTAAAAAAAACATTATATAAAATA
1 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAAC-AAAAAAAAACATTATATGAAATA
*
15150707 AAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
65 AAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * ** *
15150772 AGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCCCT-CTCTCTCTCGCGCCC
130 AGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTG--CTGGTAT-GATCGCACCC
**
15150836 GTCAACTCTTGCGCCCCCTATTCATATAAAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTAA
192 GTCAACTCTTGCGCAACCTATTCATATAAAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTAA
* *
15150901 ATGCAAATTCGACCCCGAATATCGTTCCAAATTATTTATTTCACAAAAT
257 ATGCAAATTCGA--CCAAATATCGTTCCAAATTATTTATTTCACAAAAC
15150950 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACAAAATAAAAACATTATATGAAATA
1 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACAAAA-AAAAACATTATATGAAATA
* *
15151015 AAATGGTAGGGGTGCAACACCAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
65 AAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
*
15151080 AGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATAATCGCACCCGTC
130 AGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* ** * * * * * * * *
15151145 AACTCTTGCGCAACCTATTCATATAAAGGCTGGCTGTTAACGTATTTGAGCCTCAAATTTGAATA
195 AACTCTTGCGCAACCTATTCATATAAAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTAAATG
* * *
15151210 TAAATTCGACCAAATATCGTT-----TCATTTATTTCACAAAAT
260 CAAATTCGACCAAATATCGTTCCAAATTATTTATTTCACAAAAC
* * * * * *
15151249 GCAAATAACGAATGTGTTTCACTACGTCGAGAAAATGCGAC--TAAAAAACATTATATGAAATAA
1 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACAAAAAAAAACATTATATGAAATAA
* * * * *
15151312 AATGGGAGCGGTGCAACACGAGGACTTCCCAGGGGGTCACCCATCGTAGTACTACTCTCGCCTAA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* *
15151377 GCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
131 GCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
** * * * * * * *
15151442 ACTCTTGCGCAACCTATTCATATAGTGGCTGCCTCTTATCGCATTTGAGCTTCGAATTTGAATAC
196 ACTCTTGCGCAACCTATTCATATAAAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTAAATGC
** * *
15151507 AAATTCGAAAAAATATCGTTTCAAATTATTTTTTTTCACAAAAC
261 AAATTCGACCAAATATCGTTCCAAATTA-TTTATTTCACAAAAC
* * *
15151551 GTAAATAACGAATGAGTTACACCCACGTCGAGAAAATGCAACTAAAAAAAAACATCATTTGAAAT
1 GAAAATAACGAATGAGTTACA-CCACGTCGAGAAAATGCAAC-AAAAAAAAACATTATATGAAAT
* * *
15151616 GAAATGGGAGTGGTGCAACACGAGGACTTCCCAAAAGGTCACCCATCCTAGTACTACTCTCGCCC
64 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
* * * *
15151681 AAGCACGCTTAACTACAGAGTTCTGATGGGATCCGGTGCCTTAGTGCTGGTATGATCGCACCCGT
129 AAGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * *
15151746 CAACTCTTGCGCAATCTATTCATAAAAAGGCTGCCTCCTG-TCGCACTTGCGCCTCGAGTTTAAA
194 CAACTCTTGCGCAACCTATTCATATAAAGGCTGCC-CCTGATCGCACTTGCGCCTCGAATTTAAA
* * *
15151810 TGCAAATTCGGCCAAATATCGTTTCAAATTCTTTATTTCACAAAAC
258 TGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCACAAAAC
* * * *
15151856 GCAAATAACGAATGAGTTACACCACGCCGAGAAAATACAACTAAAAAAAACATTATATGAAATAA
1 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACAAAAAAAAACATTATATGAAATAA
*
15151921 AATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTGCTCTCGCCCAA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* *
15151986 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCA
131 GCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
15152051 ACTCTTGCGCAACCTATTCATATAAA
196 ACTCTTGCGCAACCTATTCATATAAA
15152077 TGTTGCCTGA
Statistics
Matches: 1288, Mismatches: 128, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
296 214 0.17
297 1 0.00
299 53 0.04
301 2 0.00
302 31 0.02
303 185 0.14
304 29 0.02
305 34 0.03
306 284 0.22
307 55 0.04
308 288 0.22
309 65 0.05
310 34 0.03
311 13 0.01
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (303 bp):
GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACAAAAAAAAACATTATATGAAATAA
AATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
GCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
ACTCTTGCGCAACCTATTCATATAAAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTAAATGC
AAATTCGACCAAATATCGTTCCAAATTATTTATTTCACAAAAC
Found at i:15151671 original size:602 final size:602
Alignment explanation
Indices: 15150334--15152076 Score: 2458
Period size: 602 Copynumber: 2.9 Consensus size: 602
15150324 NNNNNNNAAT
* *
15150334 GAAAATAACGAATGAGTT--ACTCACGTCGAGAAAATTCAACTAAAAAAAAACATATATGAAATA
1 GAAAATAACGAATGAGTTACACCCACGTCGAGAAAATGCAACTAAAAAAAAACATATATGAAATA
*
15150397 AAATGGGAGGGGTGC-ACACCAGGACTTCCTCAGGAGGTCGACCCATCCCTAGTACTACTCTCGT
66 AAATGGGAGGGGTGCAACACCAGGACTTCC-CAAGAGGTC-ACCCAT-CCTAGTACTACTCTCG-
* *
15150461 CCCAAGCACGCTTGAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGTACC
127 CCCAAGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
* * * *
15150526 GGTCAACTCTTGCGCAATCTATTCATATAAAAGGCTGCCCCTGATTGCACTTGCGCCTCGAATTT
192 CGTCAACTCTTGCGCAATCTATTCATAT-AAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTT
* * *
15150591 AAATGCAAATTCGACCCCGAATATCGTTCCAAATTATTTATTTCACAAAACGAAAATAACGAATG
256 AAATGCAAATTCGA--CCAAATATCGTT-----TCATTTATTTCACAAAACGCAAATAACGAATG
* *
15150656 AGTTACACCATGTCGAGAAAATGCAACTTAAAAAAAACATTATATAAAATAAAATGGGAGGGGTG
314 AGTTACACCACGTCGAGAAAATGCAAC-T-AAAAAAACATTATATGAAATAAAATGGGAGGGGTG
*
15150721 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAATG
377 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
* * ** *
15150786 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCCCT-CTCTCTCTCGCGCCCGTCAACTCTTGCGC
442 CGGAGTTCTGATGGGATCCGGTGCATTAGTG--CTGGTAT-GATCGCACCCGTCAACTCTTGCGC
** * *
15150850 CCCCTATTCATATAAAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACC
504 AACCTATTCATATAAAGGCTGCCCCTGATCGCACTTGAGCCTCGAATTTAAATACAAATTCGA-C
*** *
15150915 CCGAATATCGTTCCAAATTATTTATTTCACAAAAT
568 AAAAATATCGTTCCAAATTATTTATTTCACAAAAC
15150950 GAAAATAACGAATGAGTTACA-CCACGTCGAGAAAATGCAAC-AAAATAAAAACATTATATGAAA
1 GAAAATAACGAATGAGTTACACCCACGTCGAGAAAATGCAACTAAAA-AAAAACA-TATATGAAA
*
15151013 TAAAATGGTAGGGGTGCAACACCAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCC
64 TAAAATGGGAGGGGTGCAACACCAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCC
*
15151078 CAAGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATAATCGCACCCG
129 CAAGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * * * * * * * *
15151143 TCAACTCTTGCGCAACCTATTCATATAAAGGCTGGCTGTTAACGTATTTGAGCCTCAAATTTGAA
194 TCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAA
** * * * *
15151208 TATAAATTCGACCAAATATCGTTTCATTTATTTCACAAAATGCAAATAACGAATGTGTTTCACTA
259 TGCAAATTCGACCAAATATCGTTTCATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCA
* *
15151273 CGTCGAGAAAATGCGACT-AAAAAACATTATATGAAATAAAATGGGAGCGGTGCAACACGAGGAC
324 CGTCGAGAAAATGCAACTAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGAC
* * *
15151337 TTCCCAGGGGGTCACCCATCGTAGTACTACTCTCGCCTAAGCACGCTTAACTGCGGAGTTCTGAT
389 TTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAT
* *
15151402 GGGATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTCATATAG
454 GGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTCATATAA
* * * * * * *
15151467 TGGCTGCCTCTTATCGCATTTGAGCTTCGAATTTGAATACAAATTCGA-AAAAATATCGTTTCAA
519 AGGCTGCCCCTGATCGCACTTGAGCCTCGAATTTAAATACAAATTCGACAAAAATATCGTTCCAA
*
15151531 ATTATTTTTTTTCACAAAAC
584 ATTA-TTTATTTCACAAAAC
* *
15151551 GTAAATAACGAATGAGTTACACCCACGTCGAGAAAATGCAACTAAAAAAAAACATCATTTGAAAT
1 GAAAATAACGAATGAGTTACACCCACGTCGAGAAAATGCAACTAAAAAAAAACAT-ATATGAAAT
* * * *
15151616 GAAATGGGAGTGGTGCAACACGAGGACTTCCCAAAAGGTCACCCATCCTAGTACTACTCTCGCCC
65 AAAATGGGAGGGGTGCAACACCAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
* * * *
15151681 AAGCACGCTTAACTACAGAGTTCTGATGGGATCCGGTGCCTTAGTGCTGGTATGATCGCACCCGT
130 AAGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * * *
15151746 CAACTCTTGCGCAATCTATTCATAAAAAGGCTGCCTCCTGTCGCACTTGCGCCTCGAGTTTAAAT
195 CAACTCTTGCGCAATCTATTCATATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAAT
*
15151811 GCAAATTCGGCCAAATATCGTTTCAAATTCTTTATTTCACAAAACGCAAATAACGAATGAGTTAC
260 GCAAATTCGACCAAATATCGTTTC--A---TTTATTTCACAAAACGCAAATAACGAATGAGTTAC
* *
15151876 ACCACGCCGAGAAAATACAACTAAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACG
320 ACCACGTCGAGAAAATGCAACT-AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACG
* *
15151941 AGGACTTCCCAAGAGGTCACCCATCCTAGTACTGCTCTCGCCCAAGCACGCTTAACTGCGGAGTT
384 AGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTT
*
15152006 CTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAACTCTTGCGCAACCTATTCA
449 CTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTCA
15152071 TATAAA
514 TATAAA
15152077 TGTTGCCTGA
Statistics
Matches: 1005, Mismatches: 105, Indels: 41
0.87 0.09 0.04
Matches are distributed among these distances:
600 16 0.02
601 34 0.03
602 303 0.30
603 6 0.01
604 124 0.12
606 1 0.00
607 101 0.10
609 167 0.17
612 11 0.01
614 37 0.04
615 88 0.09
616 38 0.04
617 31 0.03
618 34 0.03
619 14 0.01
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (602 bp):
GAAAATAACGAATGAGTTACACCCACGTCGAGAAAATGCAACTAAAAAAAAACATATATGAAATA
AAATGGGAGGGGTGCAACACCAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
AGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
AACTCTTGCGCAATCTATTCATATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATG
CAAATTCGACCAAATATCGTTTCATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACG
TCGAGAAAATGCAACTAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTT
CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
GATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTCATATAAAG
GCTGCCCCTGATCGCACTTGAGCCTCGAATTTAAATACAAATTCGACAAAAATATCGTTCCAAAT
TATTTATTTCACAAAAC
Found at i:15151710 original size:306 final size:304
Alignment explanation
Indices: 15150334--15152076 Score: 2463
Period size: 306 Copynumber: 5.7 Consensus size: 304
15150324 NNNNNNNAAT
* *
15150334 GAAAATAACGAATGAGTTAC-TCACGTCGAGAAAATTCAACTAAAAAAAAACA-TATATGAAATA
1 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAAACATTATATGAAATA
* *
15150397 AAATGGGAGGGGTGC-ACACCAGGACTTCCTCAGGAGGTCGACCCATCCCTAGTACTACTCTCGT
66 AAATGGGAGGGGTGCAACACGAGGACTTCC-CAAGAGGTC-ACCCAT-CCTAGTACTACTCTCG-
*
15150461 CCCAAGCACGCTTGAA-TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGTAC
127 CCCAAGCACGCTT-AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAC
* * * * *
15150525 CGGTCAACTCTTGCGCAATCTATTCATATAAAAGGCTGCCCCTGATTGCACTTGCGCCTCGAATT
191 CCGTCAACTCTTGCGCAACCTATTCATAT-AAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATT
* *
15150590 TAAATGCAAATTCGACCCCGAATATCGTTCCAAATTATTTATTTCACAAAAC
255 TAAATGCAAATTCGA--CCAAATATCGTTTCAAATTATTTATTTCACAAAAC
* * *
15150642 GAAAATAACGAATGAGTTACACCATGTCGAGAAAATGCAACTTAAAAAAAACATTATATAAAATA
1 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAAACATTATATGAAATA
*
15150707 AAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
66 AAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * * ** *
15150772 AGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCCCT-CTCTCTCTCGCGCCC
131 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG--CTGGTAT-GATCGCACCC
** * *
15150836 GTCAACTCTTGCGCCCCCTATTCATATAAAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTAA
193 GTCAACTCTTGCGCAACCTATTCATATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAA
* * *
15150901 ATGCAAATTCGACCCCGAATATCGTTCCAAATTATTTATTTCACAAAAT
258 ATGCAAATTCGA--CCAAATATCGTTTCAAATTATTTATTTCACAAAAC
15150950 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAAC-AAAATAAAAACATTATATGAAAT
1 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA-AAAAACATTATATGAAAT
* *
15151014 AAAATGGTAGGGGTGCAACACCAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
65 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
* *
15151079 AAGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATAATCGCACCCGT
130 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * * * * * * *
15151144 CAACTCTTGCGCAACCTATTCATATAAAGGCTGGCTGTTAACGTATTTGAGCCTCAAATTTGAAT
195 CAACTCTTGCGCAACCTATTCATATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAAT
** *
15151209 ATAAATTCGACCAAATATCGTTTC-----ATTTATTTCACAAAAT
260 GCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAAC
* * * * *
15151249 GCAAATAACGAATGTGTTTCACTACGTCGAGAAAATGCGACT---AAAAAACATTATATGAAATA
1 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAAACATTATATGAAATA
* * * * *
15151311 AAATGGGAGCGGTGCAACACGAGGACTTCCCAGGGGGTCACCCATCGTAGTACTACTCTCGCCTA
66 AAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
*
15151376 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTC
131 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
** * * * * *
15151441 AACTCTTGCGCAACCTATTCATATAGTGGCTGCCTCTTATCGCATTTGAGCTTCGAATTTGAATA
196 AACTCTTGCGCAACCTATTCATATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATG
** *
15151506 CAAATTCGAAAAAATATCGTTTCAAATTATTTTTTTTCACAAAAC
261 CAAATTCGACCAAATATCGTTTCAAATTA-TTTATTTCACAAAAC
* * *
15151551 GTAAATAACGAATGAGTTACACCCACGTCGAGAAAATGCAACTAAAAAAAAACATCATTTGAAAT
1 GAAAATAACGAATGAGTTACA-CCACGTCGAGAAAATGCAACTAAAAAAAAACATTATATGAAAT
* * *
15151616 GAAATGGGAGTGGTGCAACACGAGGACTTCCCAAAAGGTCACCCATCCTAGTACTACTCTCGCCC
65 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
* * *
15151681 AAGCACGCTTAACTACAGAGTTCTGATGGGATCCGGTGCCTTAGTGCTGGTATGATCGCACCCGT
130 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * * * *
15151746 CAACTCTTGCGCAATCTATTCATAAAAAGGCTGCCTCCTGTCGCACTTGCGCCTCGAGTTTAAAT
195 CAACTCTTGCGCAACCTATTCATATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAAT
* *
15151811 GCAAATTCGGCCAAATATCGTTTCAAATTCTTTATTTCACAAAAC
260 GCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAAC
* * *
15151856 GCAAATAACGAATGAGTTACACCACGCCGAGAAAATACAACT-AAAAAAAACATTATATGAAATA
1 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAAACATTATATGAAATA
*
15151920 AAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTGCTCTCGCCCA
66 AAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
*
15151985 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATC
131 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
15152050 AACTCTTGCGCAACCTATTCATATAAA
196 AACTCTTGCGCAACCTATTCATATAAA
15152077 TGTTGCCTGA
Statistics
Matches: 1292, Mismatches: 123, Indels: 45
0.88 0.08 0.03
Matches are distributed among these distances:
296 216 0.17
297 1 0.00
299 52 0.04
301 1 0.00
302 31 0.02
303 186 0.14
304 31 0.02
305 34 0.03
306 289 0.22
307 51 0.04
308 288 0.22
309 65 0.05
310 34 0.03
311 13 0.01
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (304 bp):
GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAAACATTATATGAAATA
AAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
AACTCTTGCGCAACCTATTCATATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATG
CAAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAAC
Found at i:15168232 original size:37 final size:37
Alignment explanation
Indices: 15168182--15168280 Score: 153
Period size: 37 Copynumber: 2.7 Consensus size: 37
15168172 NNNNNNNNNN
*
15168182 ATCAAGAAACAAAGTGATAAGTGGTTACACTTATCTG
1 ATCAAGAGACAAAGTGATAAGTGGTTACACTTATCTG
*
15168219 ATCAAGAGACAAAGTGATAAGTGGCTACACTTATCTG
1 ATCAAGAGACAAAGTGATAAGTGGTTACACTTATCTG
* **
15168256 ATCAAGTGGTAAAGTGATAAGTGGT
1 ATCAAGAGACAAAGTGATAAGTGGT
15168281 AGTTTCAGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.26
Consensus pattern (37 bp):
ATCAAGAGACAAAGTGATAAGTGGTTACACTTATCTG
Found at i:15168351 original size:45 final size:46
Alignment explanation
Indices: 15168242--15168365 Score: 191
Period size: 46 Copynumber: 2.8 Consensus size: 46
15168232 GTGATAAGTG
* **
15168242 GCTACACTTATCTGATCAAGTGGTAAAGTGATAAGTGGTAGTTTCA
1 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCTCA
15168288 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCTCA
*
15168333 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAG
15168366 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCTCA
Found at i:15172315 original size:304 final size:303
Alignment explanation
Indices: 15168820--15172749 Score: 5475
Period size: 303 Copynumber: 12.9 Consensus size: 303
15168810 TCGAAATGGT
* * *
15168820 TGATGGGAT-CGAGTGCATTAGTGCTGGTATGATCGCACCTGTCAACTCTTGCGCAACCTGTTCA
1 TGATGGGATCCG-GTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCA
** * *
15168884 TATAAAGGCTGCCCCTTATCGCACAAGCGTCTCGAATTTAAATGCAAATTCGATCAAATATCGTT
65 TATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTT
* *
15168949 TCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACATCGAGAAAATACAACT
130 TCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
* * *
15169014 -AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAATACGCGGACTTCTC-AGAAGGTCACC
195 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAG-AGGTCACC
* *
15169077 CATCCTAGTACTACTCTTC-CCCAAGCACGCTTGACTGCAAAGTTC
259 CATCCTAGTACTACTC-TCGCCCAAGCACGCTTAACTGCAGAGTTC
* * * * *
15169122 TGATGGGATCCGGTTCATTAGTGCTGGAATGATTGCACCCGTCAACTGTTGTGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
* *
15169187 ATAAAGGCTGCCCTTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGTCCAAATATCGTTT
66 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
* *
15169252 CAAATTATTTATTTCACAAAACGTAAATAACGAATGTGTTACACCACGTCGAGAAAATGCAACTG
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT-
* ** * *
15169317 AATAAAAATTTTATATGAAATAAAATGCGAGGGGTGCAACACGAGGACTT-CCAGGAGGTCACCC
195 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCC
* * *
15169381 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAATTGCGGGGTTC
260 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTC
* * *
15169425 TGATGGGATCCGGTTCATTAGTGCTGGAATGATCGCACCCGTCAACTGTTGCGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
** * * *
15169490 ATAAAGATTGCCCTTTATCGCACTTGCGCCGCGAATTTAAATGCAAATTAGACCAAATATCGTTT
66 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
* * *
15169555 CAAATTATTTATTTCACAAAACGTC-ACTAACAAATGAGTTAGACCACGTCGAGAAAATTG-AAC
131 CAAATTATTTATTTCACAAAACG-CAAATAACGAATGAGTTACACCACGTCGAGAAAA-TGCAAC
*
15169618 TAAAGAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGA-GTCAC
194 TAAA-AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCAC
* * * *
15169682 CCATCCTACTACTACTCTCTCCCAAGCACGCTTAACAGCATAGTTC
258 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTC
* *
15169728 TGATGGGATCCGGTGCATTAGTGTTGGTATGATCGCACCCGTCAACTCTTGCGCACTCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
** * *
15169793 ATAAAGTTTGCCCCATATCGCACTTGCCCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
66 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
* *
15169858 CAAATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAGCTA
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT-
* * *
15169923 AAAAAAAACATTATATGAAATAAAATGGAAGGGGTGCAACACAAGGACTTCCCAGGAGGTCA-CC
195 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCC
* * *
15169987 AGTCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGAGTTT
260 A-TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTC
* *
15170032 TGATCGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCACTCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
*
15170097 ATAAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCATATATCGTT
66 AT-AAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTT
* * * ** * *
15170162 TCAAAGTATTTATTTCACAAAACGTAAATAACAAATGAGTTACACCACGTAAAAAAAATTCAACT
130 TCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
* *
15170227 AAATAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACCTCCCAGGAGGTCACC
195 AAA-AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACC
*
15170292 CATCCTTGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTC
259 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTC
** *
15170337 TGATGGGATCATGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCACTCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
*
15170402 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCATATATCGTTT
66 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
* * *
15170467 CAAAGTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGAAACTA
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTA
* *
15170532 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCTC-AGAAGGTCTCCC
196 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAG-AGGTCACCC
* *
15170596 ATCCTAGTACTACT-TC-CCAAGAGGTCACCCATCCTAGTACTACTCCCGCCCAAGCACGCTTAA
260 ATCCTAGTACTACTCTCGCCCA-A-G-CA--C--GCT--TA--ACT---G--C-AG-A-G-TT--
15170659 C
303 C
* * * * * * * ** * * * * * * * * *
15170660 TAAAGAGTTCTGATGGGATCCGGTGCAT--TAGCGCTGGTA--TGATCGCACCCGT-CAATTCTT
1 TGATGGGATCCGGT-GCAT-TAGTGC-TGGTA-TGATCGCACCCG-TC-AACTCTTGC---GC--
15170720 GCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTC
55 ----AATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTC
* * *
15170785 GACCATATATCGTTTCAAAGTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTC
116 GACCAAATATCGTTTCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTC
* * * *
15170850 GAGAAAATGAAACTAAATAAAAGATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACATC
181 GAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTC
* * *
15170915 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCACAAGCA-GACTTAACTGCGGAGTTC
246 CCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG-CTTAACTGCAGAGTTC
* *
15170973 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAACTCTTGCGCAACCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
* * *** *** * * * *
15171038 ATAAATGTTGCCTGATATATTACTTGAGCCTC-AGATTTGAATACAAATTCGACAAAATATCGTT
66 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGA-ATTTAAATGCAAATTCGACCAAATATCGTT
* *
15171102 TCAAATTATTTATTTCACAAAACGCAAATAAGGAAT--G----ACGACGTCGAG-AAATGCAACT
130 TCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
* * *
15171160 AAAAAAAACATTATATGAAATAAAATAGAAGGGGTGCAACACGAGGACTTCCTAAGAGGTCACCC
195 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCC
* * *
15171225 ATCCTAGTACTATTCTCGCCCAAGCATGCTTAACTGAAGAGTTC
260 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTC
* * *
15171269 TGATCGGATCCGGTGCATTAGTGCTGGTATGATCGCACCTGTCAACTCTTGCGCAATCTAATCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
* *
15171334 ATAAAGGCCGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGGCCAAATATCGTTT
66 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
15171399 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTA
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTA
** *
15171464 AAAAAAGGATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
196 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
* * * **
15171529 TCCTAGTACTACTCTCGCTCAAGCACGGTTAAATGTGGAGTTC
261 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTC
*
15171572 TGATGGGATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
*
15171637 ATGAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
66 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
*
15171702 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCTCGTCGAGAAAATGCAACTA
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTA
**
15171767 AAAAAAGGATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
196 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
* * *
15171832 TCTTGGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
261 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTC
* * * * * *
15171875 TGATGGAATCCGATCCATTAGTGCCGGTATGATCGCACCCGTCAACTCTTGCGTAACCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
* ** * * * * * *
15171940 ATAAAGGCTTCCTGTTATCGTACTTGAGCCTCAAATTTGAATACAAATTCGACAAAATATCGTTT
66 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
* * *
15172005 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACGACGTTGAGAAAATGCAATTA
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT-
* *
15172070 AAAAAAAACATTATATGAAATAAAATGGAAGGGGTGCAACACGAGGACTTCGCAAGAGGTCACCC
195 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCC
* *
15172135 ATCCTAGTACTACTCCCGCCCAAGCACGCTTAACTGAAGAGTTC
260 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTC
* *
15172179 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATGTATTGAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
* * * *
15172244 ATAAAGGCTGCCCCCTGTCGCACTTGCGCCTCGAGTTTAAATGCAAATTCGGCCAAATATCGTTT
66 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
*
15172309 CAAATTATTTATTTCACAAAACGCAAAAAACGAATGAGTTACACCACGTCGAGAAAATGCAACT-
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTA
* *
15172373 AAAAAAAGATTATATGAAATAAAATGGGAGGGGTGCACCACGAGGACTTCCCAAGAGGTCACCCA
196 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
*
15172438 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
261 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTC
* *
15172481 TGATGGGATCCGGTGCATTAATGCTGGTATGATCACACCCGTCAACTCTTGCGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
15172546 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
66 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
*
15172611 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACGACGTCGAGAAAATGCAACTA
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTA
*
15172676 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGAAACACGAGGACTTCCCAAGAGGTCACCCA
196 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
15172741 TCCTAGTAC
261 TCCTAGTAC
15172750 CACTGTAATA
Statistics
Matches: 3231, Mismatches: 321, Indels: 151
0.87 0.09 0.04
Matches are distributed among these distances:
296 248 0.08
297 12 0.00
298 1 0.00
301 4 0.00
302 479 0.15
303 1343 0.42
304 557 0.17
305 273 0.08
306 4 0.00
308 2 0.00
309 1 0.00
310 3 0.00
311 12 0.00
312 11 0.00
313 9 0.00
315 3 0.00
316 1 0.00
317 2 0.00
318 3 0.00
319 2 0.00
320 1 0.00
321 3 0.00
323 9 0.00
324 11 0.00
325 12 0.00
326 3 0.00
327 1 0.00
328 2 0.00
332 2 0.00
333 211 0.07
334 4 0.00
335 2 0.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (303 bp):
TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTT
CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTA
AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTC
Found at i:15174140 original size:37 final size:37
Alignment explanation
Indices: 15174098--15174283 Score: 300
Period size: 37 Copynumber: 5.0 Consensus size: 37
15174088 GGTAGTTTTA
*
15174098 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
15174135 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
15174172 GTTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
15174209 GTTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* **
15174246 GCTACACTTATCTGATCAAGTGGTAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
15174283 G
1 G
15174284 TAGTTTCAGC
Statistics
Matches: 141, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 141 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.27
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:15174355 original size:45 final size:46
Alignment explanation
Indices: 15174246--15174369 Score: 191
Period size: 46 Copynumber: 2.8 Consensus size: 46
15174236 GTGATAAGTG
* **
15174246 GCTACACTTATCTGATCAAGTGGTAAAGTGATAAGTGGTAGTTTCA
1 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCTCA
15174292 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCTCA
*
15174337 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAG
15174370 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCTCA
Found at i:15175382 original size:302 final size:301
Alignment explanation
Indices: 15174824--15176327 Score: 2197
Period size: 302 Copynumber: 5.0 Consensus size: 301
15174814 TCGAAATGGT
* * *
15174824 TGATGGGAT-CGAGTGCATTAGTGCTGGTATGATCGCACCTGTCAACTCTTGCGCAACCTGTTCA
1 TGATGGGATCCG-GTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCA
* ** * * *
15174888 TATAAAGGCTGCCCCTTATCGCACAAGCGTCTCGAATTTAAATGCAAATTCGATCAAATATCGTT
65 TATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTT
* *
15174953 TCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACATCGAGAAAATACAACT
130 TCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
*
15175018 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
195 AAAAAAACATTATATGAAATAAAATGAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
*
15175083 TCCTAGTACTACTCATGCCCAAGCAAGCTTAACTGCGGAGTTC
260 TCCTAGTACTACTC-TGCCCAAGCACGCTTAACTGCGGAGTTC
* * * *
15175126 TGATAGGATCCGGTGCATTATTGCTAGTATGATCGCATCCGTCAACTCTTGCGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
* *
15175191 ATAAAGGCTGCCTCTTATCGCACTTGCGCCTTGAATTTAAATACAAATTCGACCAAATAACGTTT
66 ATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTTT
*
15175256 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTGCACCACGTCGAGAAAATGCAACTA
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTA
*
15175321 AAAAAACATTATATGAAATAAAATGACAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
196 AAAAAACATTATATGAAATAAAATGAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
15175386 CCTAGTACTACTCTTGCCCAAGCACGCTTAACTGCGGAGTTC
261 CCTAGTACTACTC-TGCCCAAGCACGCTTAACTGCGGAGTTC
15175428 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
15175493 ATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTTT
66 ATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTTT
*
15175558 CAAATTATTTATTTCACAAAACGCGAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTA
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTA
* * * *
15175623 AAAAGACAATTATATGAAATAAAATAATGGGGGGGTGCAACACGAGGACTTCCCAAGAGGTCACC
196 AAAAAAC-ATTATATGAAATAAAATGA--GAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
*
15175688 CATCCTAGTACTACTCTCGTCCAAGCACGCTTAACTGCGGAGTTC
258 CATCCTAGTACTACTCT-GCCCAAGCACGCTTAACTGCGGAGTTC
* * * *
15175733 TGATCGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGTAACCTATTCAG
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
* * ** * * * * *
15175798 ATAAAGGCTGCCTGTTATCGTACTTAAGCCTCAAATTTGAATACAAATTCGACAAAATATCGTTT
66 ATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTTT
* *
15175863 CAAATTATTTATTTCACAAAACGCAAATAACGAATGGGTTACACGACGTCGAGAAAATGCAACTA
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT-
*
15175928 AAAAAAAACATTATATGAAATAAAATG-GAAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACC
195 -AAAAAAACATTATATGAAATAAAATGAG-AGGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
* **
15175992 CATCCTAGTACTACTCT-CCTGCAGGCACAATTAACTGCGGAGTTC
258 CATCCTAGTACTACTCTGCC--CAAGCACGCTTAACTGCGGAGTTC
* * * * * * * *
15176037 TAATGGGATCCGGTGCATTACTACTGGTATGATCACAACCGCCAACTCTTACGCAATCTATTTAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
* * * * *
15176102 ATAAAGGCTGCCCCCTATCGCACCTGTGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTT
66 ATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTTT
* * * * * ** * *
15176167 CAAGTTATTTATTTCGCAAAACGCAAATAACTAATTAATTACACCACGTTTAGAAAATTCTACTT
131 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAAC-T
* * *
15176232 AAAAAAA-ATTTATATGAAGTAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCA
195 AAAAAAACA-TTATATGAAATAAAATGAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
*
15176296 ATCCTAGTACTAGTCTCGCCCAAGCACGCTTA
259 ATCCTAGTACTACTCT-GCCCAAGCACGCTTA
15176328 GCTACTCTTG
Statistics
Matches: 1087, Mismatches: 100, Indels: 29
0.89 0.08 0.02
Matches are distributed among these distances:
302 472 0.43
303 102 0.09
304 233 0.21
305 256 0.24
306 17 0.02
307 7 0.01
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (301 bp):
TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
ATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTTT
CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTA
AAAAAACATTATATGAAATAAAATGAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
CCTAGTACTACTCTGCCCAAGCACGCTTAACTGCGGAGTTC
Found at i:15176267 original size:607 final size:602
Alignment explanation
Indices: 15174826--15176327 Score: 2260
Period size: 607 Copynumber: 2.5 Consensus size: 602
15174816 GAAATGGTTG
* *
15174826 ATGGGAT-CGAGTGCATTAGTGCTGGTATGATCGC-ACCTGTCAACTCTTGCGCAACCTGTTCAT
1 ATGGGATCCG-GTGCATTAGTGCTGGTATGATCGCAACC-GTCAACTCTTGCGCAATCTATTCAT
* * * *
15174889 ATAAAGGCTGCCCCTTATCGCACAAGCGTCTCGAATTTAAATGCAAATTCGATCAAATATCGTTT
64 ATAAAGGCTGCCCCTTATCGCACATGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTTT
*
15174954 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACATCGAGAAAATACAACTA
129 CAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATACAACTA
15175019 AAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
194 AAAAAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* *
15175084 CCTAGTACTACTCAT-GCCCAAGCAAGCTTAACTGCGGAGTTCTGATAGGATCCGGTGCATTATT
258 CCTAGTACTACTC-TCGCCCAAGCACGCTTAACTGCGGAGTTCTGATAGGATCCGGTGCATTAGT
* * *
15175148 GCTAGTATGATCGCATCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCTCTTATCGCA
322 GCTAGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTCAGATAAAGGCTGCCTCTTATCGCA
** ** *
15175213 CTTGCGCCTTGAATTTAAATACAAATTCGACCAAATAACGTTTCAAATTATTTATTTCACAAAAC
387 CTTAAGCCTCAAATTTAAATACAAATTCGACAAAATAACGTTTCAAATTATTTATTTCACAAAAC
*
15175278 GCAAATAACGAATGAGTTGCACCACGTCGAGAAAATGCAACTAAAAAAACATTATATGAAATAAA
452 GCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAACATTATATGAAATAAA
*
15175343 ATGACAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTTGCCCAAG
517 ATGACAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTTG-CCAAG
** *
15175408 CACGCTTAACTGCGGAGTTCTG
581 CACAATTAACTGCGGAGTTCTA
*
15175430 ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATAT
1 ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAACCGTCAACTCTTGCGCAATCTATTCATAT
* *
15175495 AAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTTTCA
66 AAAGGCTGCCCCTTATCGCACATGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTTTCA
* *
15175560 AATTATTTATTTCACAAAACGCGAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAA
131 AATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATACAACTAAA
*
15175625 AAGACAATTATATGAAATAAAATAATGGG-GGGGTGCAACACGAGGACTTCCCAAGAGGTCACCC
196 AA-A-AATTATATGAAAT--AA-AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* *
15175689 ATCCTAGTACTACTCTCGTCCAAGCACGCTTAACTGCGGAGTTCTGATCGGATCCGGTGCATTAG
256 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATAGGATCCGGTGCATTAG
* * * *
15175754 TGCTGGTATGATCGCACCCGTCAACTCTTGCGTAACCTATTCAGATAAAGGCTGCCTGTTATCGT
321 TGCTAGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTCAGATAAAGGCTGCCTCTTATCGC
* *
15175819 ACTTAAGCCTCAAATTTGAATACAAATTCGACAAAATATCGTTTCAAATTATTTATTTCACAAAA
386 ACTTAAGCCTCAAATTTAAATACAAATTCGACAAAATAACGTTTCAAATTATTTATTTCACAAAA
* *
15175884 CGCAAATAACGAATGGGTTACACGACGTCGAGAAAATGCAACTAAAAAAAAACATTATATGAAAT
451 CGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT--AAAAAAACATTATATGAAAT
15175949 AAAATGGA-AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCCTG
514 AAAAT-GACAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCT--TG
*
15176013 -CAGGCACAATTAACTGCGGAGTTCTA
576 CCAAGCACAATTAACTGCGGAGTTCTA
* * * * * *
15176039 ATGGGATCCGGTGCATTACTACTGGTATGATCACAACCGCCAACTCTTACGCAATCTATTTATAT
1 ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAACCGTCAACTCTTGCGCAATCTATTCATAT
* * * *
15176104 AAAGGCTGCCCCCTATCGCACCTGTGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCA
66 AAAGGCTGCCCCTTATCGCACATGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTTTCA
* * * * * ** * *
15176169 AGTTATTTATTTCGCAAAACGCAAATAACTAATTAATTACACCACGTTTAGAAAATTCTACTTAA
131 AATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATACAAC-TAA
* *
15176234 AAAAAATTTATATGAAGTAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCAATC
195 AAAAAA-TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
*
15176299 CTAGTACTAGTCTCGCCCAAGCACGCTTA
259 CTAGTACTACTCTCGCCCAAGCACGCTTA
15176328 GCTACTCTTG
Statistics
Matches: 816, Mismatches: 66, Indels: 29
0.90 0.07 0.03
Matches are distributed among these distances:
604 179 0.22
605 17 0.02
606 8 0.01
607 316 0.39
608 8 0.01
609 278 0.34
610 8 0.01
611 2 0.00
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (602 bp):
ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAACCGTCAACTCTTGCGCAATCTATTCATAT
AAAGGCTGCCCCTTATCGCACATGCGCCTCGAATTTAAATGCAAATTCGACCAAATAACGTTTCA
AATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATACAACTAAA
AAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCT
AGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATAGGATCCGGTGCATTAGTGCTA
GTATGATCGCACCCGTCAACTCTTGCGCAACCTATTCAGATAAAGGCTGCCTCTTATCGCACTTA
AGCCTCAAATTTAAATACAAATTCGACAAAATAACGTTTCAAATTATTTATTTCACAAAACGCAA
ATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAACATTATATGAAATAAAATGA
CAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTTGCCAAGCACAA
TTAACTGCGGAGTTCTA
Found at i:15176476 original size:195 final size:195
Alignment explanation
Indices: 15176144--15176523 Score: 548
Period size: 195 Copynumber: 1.9 Consensus size: 195
15176134 GAATTTGAAT
* * *
15176144 GCAAATTCGACCAAATAACGTTTCAAGTTATTTATTTCGCAAAACGCAAATAACTAATTAATTAC
1 GCAAATTCGACCAAATAACATTTCAAATTATTTATTTCGCAAAACGAAAATAACTAATTAATTAC
* * * * * *
15176209 ACCACGTTTAGAAAATTCTACTTAAAAAAAATTTATATGAAGTAAAATGGGAGGGGTGCAACACG
66 ACCACGTGTAGAAAATGCAACTGAAAAAAAATTTATATGAAATAAAACGGGAGGGGTGCAACACG
*
15176274 AGGACTTCCCAGGAGGTCA-CCAATCCTAGTACTAGTCTCGCCCAAGCACGCTTAGCTACTCTTG
131 AGGACTTCCCAGGAGGTCACCCAA-CCTAGTACTAATCTCGCCCAAGCACGCTTAGCTACTCTTG
15176338 C
195 C
* * * * *
15176339 GCAAATTTGGCCAAATAACATTTTAAATTATTTATTTCGCAAAATGAAAATAACTAATTAGTTAC
1 GCAAATTCGACCAAATAACATTTCAAATTATTTATTTCGCAAAACGAAAATAACTAATTAATTAC
* * *
15176404 ACCACGTGTAGAAAATGCAAC-GAAAAACAACTTTATATGAAATAATACGGGAGGGGTGCAACAT
66 ACCACGTGTAGAAAATGCAACTGAAAAA-AAATTTATATGAAATAAAACGGGAGGGGTGCAACAC
* *
15176468 GAGGACTTCCCTGGAGGTCACCCAACCTAGTACTAATCTTGCCCAAGCACGCTTAG
130 GAGGACTTCCCAGGAGGTCACCCAACCTAGTACTAATCTCGCCCAAGCACGCTTAG
15176524 TTGCGGAGTT
Statistics
Matches: 163, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
194 5 0.03
195 154 0.94
196 4 0.02
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (195 bp):
GCAAATTCGACCAAATAACATTTCAAATTATTTATTTCGCAAAACGAAAATAACTAATTAATTAC
ACCACGTGTAGAAAATGCAACTGAAAAAAAATTTATATGAAATAAAACGGGAGGGGTGCAACACG
AGGACTTCCCAGGAGGTCACCCAACCTAGTACTAATCTCGCCCAAGCACGCTTAGCTACTCTTGC
Found at i:15176829 original size:264 final size:265
Alignment explanation
Indices: 15176339--15176831 Score: 641
Period size: 264 Copynumber: 1.9 Consensus size: 265
15176329 CTACTCTTGC
* * * * *
15176339 GCAAATTTGGCCAAATAACATTTTAAATTATTTATTTCGCAAAATGAAAATAACTAATTAGTTAC
1 GCAAATTCGACCAAATAACATTTGAAATTATTGATTTCGCAAAACGAAAATAACTAATTAGTTAC
* * *
15176404 ACCACGTGTAGAAAATGCAACGAAAAACAACTTTATATGAAATAATACGGGAGGGGTGCAACATG
66 ACCACGTGTAGAAAATGCAACGAAAAACAACTTTATATGAAATAAAACGGGAGAGGTGCAACACG
* * * * * ** *
15176469 AGGACTTCCCTGGAGGTCACCCAACCTAGTACTAATCTTGCCCAAGCACGCTTAGTTGCGGAGTT
131 AGGACTTCCATGAAGGTCACCCAACATAATACTAATATTGCCCAAGCACGCTTAACTACGGAGTT
* * *
15176534 CTGATAGGATCCGGTGCACTAGCGTTGGTATGATGGTGCCCCTTATCGCACTTGCGCCTCGAATT
196 CTGATAGGATACGATGCACTAGCGCTGGTATGATGGTGCCCCTTATCGCACTTGCGCCTCGAATT
15176599 TGAAT
261 TGAAT
* * *
15176604 GCAAATTCGACCAACTAACGTTTGAAATTATTGATTTCGCAAAACGAAAATAACTAATTATTTAC
1 GCAAATTCGACCAAATAACATTTGAAATTATTGATTTCGCAAAACGAAAATAACTAATTAGTTAC
* ** * **
15176669 ACCACGTTTAGAAAATTTAACTAAAAA-AACTTTATATGAAATAAAATTGGAGAGGTGCAACACG
66 ACCACGTGTAGAAAATGCAACGAAAAACAACTTTATATGAAATAAAACGGGAGAGGTGCAACACG
* * *
15176733 AGGACTTCCATGAAGGTTACCCATCATAATACTAATATCT-CGCAAGCACGCTTAACTACGGAGT
131 AGGACTTCCATGAAGGTCACCCAACATAATACTAATAT-TGCCCAAGCACGCTTAACTACGGAGT
* * *
15176797 TCTGATGGGATACTATGCATTA-CTGCTGGTATGAT
195 TCTGATAGGATACGATGCACTAGC-GCTGGTATGAT
15176832 CACACCCGTC
Statistics
Matches: 192, Mismatches: 34, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
263 1 0.01
264 110 0.57
265 81 0.42
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (265 bp):
GCAAATTCGACCAAATAACATTTGAAATTATTGATTTCGCAAAACGAAAATAACTAATTAGTTAC
ACCACGTGTAGAAAATGCAACGAAAAACAACTTTATATGAAATAAAACGGGAGAGGTGCAACACG
AGGACTTCCATGAAGGTCACCCAACATAATACTAATATTGCCCAAGCACGCTTAACTACGGAGTT
CTGATAGGATACGATGCACTAGCGCTGGTATGATGGTGCCCCTTATCGCACTTGCGCCTCGAATT
TGAAT
Found at i:15177147 original size:304 final size:302
Alignment explanation
Indices: 15176570--15178268 Score: 1995
Period size: 304 Copynumber: 5.7 Consensus size: 302
15176560 GGTATGATGG
* *
15176570 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAACTAACGTTTGAAATTAT
1 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTAT
* * * *
15176635 TGATTTCGCAAAACGAAAATAACTAATTATTTACACCACGTTTAGAAAATTTAACT-AAAAAAAC
66 TTATTTCACAAAAC-AAAATAACTAATTAGTTACACCACGTTTAGAAAATTCAACTAAAAAAAAC
* * * * * *
15176699 TTTATATGAAATAAAATTGGAGAGGTGCAACACGAGGACTT-CCATGAAGGTTACCCATCATAAT
130 TTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA-GGAGGTCACCCATCCTAGT
* * * * * * ** *
15176763 ACTAATATCTCGCAAGCACGCTTAACTACGGAGTTCTGATGGGATACTATGCATTACTGCTGGTA
194 ACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTA
* *
15176828 TGATCACACCCGTCAACTCTTACACAATCTATTTATATAAAGGC
259 TGATCACACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* * * * * * *
15176872 TGCCCCCTATCGCATTTGTGCCTCGGATTTGAAAGTAAATTCGACCAAATAACGTTTCAAATTTT
1 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTAT
* * *
15176937 TTATTTCACAAAACACAAATAACTAATTAGTTACACCACGTGTAGAGAATGCAACTAAAAATAAA
66 TTATTTCACAAAACA-AAATAACTAATTAGTTACACCACGTTTAGAAAATTCAACTAAAAA-AAA
* * * * * *
15177002 CTATATATGAAATAAAATGGGAGGGTTCCAACACAAGGACTTCCCAGGAGTTCACCAATCCTAGT
129 CTTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGT
* * * *
15177067 ACTACTCTCGCCCAAGCACGCTTAGCTGCGGAGTTCTAATGGGATCCGGTACATTAGTACTGGTA
194 ACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTA
* * * *
15177132 CGATCACACCCGTCAACTCTTGTGCAATCTGTTTATATATAGGC
259 TGATCACACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* * * *
15177176 TGCCCCTTATTGCATTTGCGCCTCGTATTTGAATGCAAATTCGACAAAATAACGTTTCAAATTAT
1 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTAT
* * * * *
15177241 TTATTTCGCAAAACGAAAATTACTAATTAGTTACACCACGTGTAAAAAATTCAACGAAAAAAAAA
66 TTATTTCACAAAAC-AAAATAACTAATTAGTTACACCACGTTTAGAAAATTCAAC-TAAAAAAAA
* *
15177306 CTTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGCCTTTCCAGGAGGTCACCCATCCTAGT
129 CTTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGT
* * *
15177371 ACTACTCTTGCCCAAGCACGCTTAACTGTGGAGTTTTGATGGGATCCGGTGCATTAGTGCTGGTA
194 ACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTA
* * * *
15177436 TGATCGCACCCGTTAACCCTTGCGCAATCTATTTATATAAATGC
259 TGATCACACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* *
15177480 TGCCCCTTATCGTACTTGCGCCTCAAATTTGAATGCAAATTCGACCAAATAACG---C-AA--A-
1 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTAT
* *
15177538 --A--T------GC-AAATAACTAATTAGTTACACCACATTTAGAAAATTCAACTAAAAAAAAAA
66 TTATTTCACAAAACAAAATAACTAATTAGTTACACCACGTTTAGAAAATTCAACT--AAAAAAAA
* ** * *
15177592 CTTTATATGAAATAAAATGGGAGGGGTGAAACATAAGGCCTTCCCAGGAGGTCACCCATCCAAGT
129 CTTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGT
* * * * *
15177657 ACTATTCTTGCCCAAGCACGCTTAACTGTGGAGTTTTGATGGGATCCGGTGCAGTAGTGCTGGTA
194 ACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTA
* * * * *
15177722 TGGTCGCACCAGTTAACTCTTGCGCAATCTATTTATATAAAAGC
259 TGATCACACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* * * * * *
15177766 TACCCCTTTTCGTACTTGCGCCTCGAATTTGAATTCAAATTCAACCAAATAA--TGT---A--A-
1 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTAT
* *
15177823 --A----AC---A-AAAATAACTAATTAGTTACACCACGTTTAGAAAATTTAATTAAAAAAAACT
66 TTATTTCACAAAACAAAATAACTAATTAGTTACACCACGTTTAGAAAATTCAACTAAAAAAAACT
* *
15177878 TTATATGAAATAAAATTGGAGGGTTGCAACACGAGGACTTCCCAGGAAGGTCACCCATCCTAGTA
131 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGG-AGGTCACCCATCCTAGTA
* * * *
15177943 CTACTCTC-CCGCAAGCACGATTAACTGCGGAGTTCTAATGGGATCCGGTGCATTACTACTGGTA
195 CTACTCTCGCC-CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTA
*
15178007 TGATCACACCCGTCAACTCTTACGCAATCTATTTATATAAAGGC
259 TGATCACACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* * *
15178051 TGCCCCCTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACCAAA-AATCGTTTCAAGTTA
1 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAA-CGTTTCAAATTA
* * * * * *
15178115 TTTATTTCCCAAAATGC-AAATGAGTAATTAGTTACACCATGTTTAGAAAATTCTACTTAAAAAA
65 TTTATTTCACAAAA--CAAAATAACTAATTAGTTACACCACGTTTAGAAAATTCAACTAAAAAAA
* *
15178179 ACTTTATATGAAGTAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCAATCCTAG
128 ACTTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAG
*
15178244 TACTAGTCTCGCCCAAGCACGCTTA
193 TACTACTCTCGCCCAAGCACGCTTA
15178269 GCTACTCTCG
Statistics
Matches: 1198, Mismatches: 161, Indels: 75
0.84 0.11 0.05
Matches are distributed among these distances:
284 54 0.05
285 187 0.16
286 255 0.21
287 3 0.00
292 1 0.00
293 1 0.00
295 2 0.00
298 1 0.00
299 1 0.00
300 2 0.00
301 2 0.00
302 104 0.09
303 39 0.03
304 537 0.45
305 9 0.01
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (302 bp):
TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTAT
TTATTTCACAAAACAAAATAACTAATTAGTTACACCACGTTTAGAAAATTCAACTAAAAAAAACT
TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
TACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG
ATCACACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
Found at i:15178417 original size:195 final size:195
Alignment explanation
Indices: 15178112--15178468 Score: 624
Period size: 195 Copynumber: 1.8 Consensus size: 195
15178102 TCGTTTCAAG
* * * * * * *
15178112 TTATTTATTTCCCAAAATGCAAATGAGTAATTAGTTACACCATGTTTAGAAAATTCTACTTAAAA
1 TTATTTATTTCACAAAATGAAAATAACTAATTAGTTACACCACGTGTAGAAAATTCTACTAAAAA
*
15178177 AAACTTTATATGAAGTAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCAATCCT
66 AAACTTTATATGAAGTAAAATGGGAGGGGTACAACACGAGGACTTCCCAGGAGGTCACCAATCCT
*
15178242 AGTACTAGTCTCGCCCAAGCACGCTTAGCTACTCTCGCGCAAATTTGGCCAAATAACATTTTAAA
131 AGTACTACTCTCGCCCAAGCACGCTTAGCTACTCTCGCGCAAATTTGGCCAAATAACATTTTAAA
15178307 TTATTTATTTCACAAAATGAAAATAACTAATTAGTTACACCACGTGTAGAAAATTCTACTAAAAA
1 TTATTTATTTCACAAAATGAAAATAACTAATTAGTTACACCACGTGTAGAAAATTCTACTAAAAA
*
15178372 AAACTTTATATGAAGTAAAATGGGAGGGGTACAACACGAGGACTTCCCAGGAGGTCACCCATCCT
66 AAACTTTATATGAAGTAAAATGGGAGGGGTACAACACGAGGACTTCCCAGGAGGTCACCAATCCT
15178437 AGTACTACTCTCGCCCAAGCACGCTTAGCTAC
131 AGTACTACTCTCGCCCAAGCACGCTTAGCTAC
15178469 GAAGTTCTAA
Statistics
Matches: 152, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
195 152 1.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27
Consensus pattern (195 bp):
TTATTTATTTCACAAAATGAAAATAACTAATTAGTTACACCACGTGTAGAAAATTCTACTAAAAA
AAACTTTATATGAAGTAAAATGGGAGGGGTACAACACGAGGACTTCCCAGGAGGTCACCAATCCT
AGTACTACTCTCGCCCAAGCACGCTTAGCTACTCTCGCGCAAATTTGGCCAAATAACATTTTAAA
Found at i:15178835 original size:302 final size:303
Alignment explanation
Indices: 15178280--15178851 Score: 880
Period size: 302 Copynumber: 1.9 Consensus size: 303
15178270 CTACTCTCGC
* * *
15178280 GCAAATTTGGCCAAATAACATTTTAAATTATTTATTTCACAAAATGAAAATAACTAATTAGTTAC
1 GCAAATTCGACCAAATAACATTTTAAATTATTTATTTCACAAAACGAAAATAACTAATTAGTTAC
* *
15178345 ACCACGTGTAGAAAATTCTACTAAAAAAAACTTTATATGAAGTAAAATGGGAGGGGTACAACACG
66 ACCACGTGTAGAAAATTCAACTAAAAAAAACTTTATATGAAGTAAAATGGGAGGGATACAACACG
* * *
15178410 AGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAGCTACGAAGTT
131 AGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACAAAGTT
** * * *
15178475 CTAATGGGATCCGGTGCATTACTGCTGGTTTGATCGCACCCGTTAATACTTACGCAATCTATTTA
196 CTAATGGGATCCAATGCATTACTGCTGGTATGATCACACCCGTCAATACTTACGCAATCTATTTA
15178540 TATAAAGGCTTCCACCTATCGCACTTTCACCTCAAATTTGACT
261 TATAAAGGCTTCCACCTATCGCACTTTCACCTCAAATTTGACT
* * * *
15178583 GCAAATTCGACCAAATAA-TTTTTCAAATTATTTATTTTACAGAACGCAAATAACTAATTAGTTA
1 GCAAATTCGACCAAATAACATTTT-AAATTATTTATTTCACAAAACGAAAATAACTAATTAGTTA
* *
15178647 CACCACGTTTAGAAAATTCAACT-AAAAAAACTTTATATGAAGTAAAATGGGAGGGATGCAACAC
65 CACCACGTGTAGAAAATTCAACTAAAAAAAACTTTATATGAAGTAAAATGGGAGGGATACAACAC
* * * *
15178711 GATGACTTCCCAGGAGATCACCCATCCTAGTTCTACTCTCGCCCAAGCATGCTTAACTGCAAAGT
130 GAGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACAAAGT
* *
15178776 TCTAATGGGATCCAATGCATTAGTGCTGGTATGATCACACCCGTCAAGT-CTTGCGCAATCTATT
195 TCTAATGGGATCCAATGCATTACTGCTGGTATGATCACACCCGTCAA-TACTTACGCAATCTATT
15178840 TATATAAAGGCT
259 TATATAAAGGCT
15178852 GCCCCTTATT
Statistics
Matches: 242, Mismatches: 25, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
302 168 0.69
303 74 0.31
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (303 bp):
GCAAATTCGACCAAATAACATTTTAAATTATTTATTTCACAAAACGAAAATAACTAATTAGTTAC
ACCACGTGTAGAAAATTCAACTAAAAAAAACTTTATATGAAGTAAAATGGGAGGGATACAACACG
AGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACAAAGTT
CTAATGGGATCCAATGCATTACTGCTGGTATGATCACACCCGTCAATACTTACGCAATCTATTTA
TATAAAGGCTTCCACCTATCGCACTTTCACCTCAAATTTGACT
Found at i:15185987 original size:10 final size:10
Alignment explanation
Indices: 15185963--15186009 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
15185953 AAATCTGTCG
15185963 AAAATT-ATT
1 AAAATTAATT
*
15185972 AAAATTAATC
1 AAAATTAATT
15185982 AAAATTAATTAT
1 AAAATTAA-T-T
15185994 AAAATTAATT
1 AAAATTAATT
15186004 AAAATT
1 AAAATT
15186010 CAACATGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 6 0.18
10 17 0.52
11 2 0.06
12 8 0.24
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTAATT
Found at i:15185999 original size:22 final size:23
Alignment explanation
Indices: 15185965--15186009 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
15185955 ATCTGTCGAA
15185965 AATTATTAAAATTAATCAAAATT
1 AATTATTAAAATTAATCAAAATT
*
15185988 AATTA-TAAAATTAATTAAAATT
1 AATTATTAAAATTAATCAAAATT
15186010 CAACATGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
AATTATTAAAATTAATCAAAATT
Found at i:15186721 original size:21 final size:20
Alignment explanation
Indices: 15186697--15186735 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15186687 CAAGGACATA
15186697 TTCTCTTCTCTTTTTTTTCTT
1 TTCTCTTCT-TTTTTTTTCTT
*
15186718 TTCTTTTCTTTTTTTTTC
1 TTCTCTTCTTTTTTTTTC
15186736 ACGAGCATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (20 bp):
TTCTCTTCTTTTTTTTTCTT
Found at i:15188812 original size:26 final size:26
Alignment explanation
Indices: 15188783--15188836 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
15188773 ATTCTGGTAT
*
15188783 AAAATATT-AATAATTCAAT-AAATTG
1 AAAA-ATTAAATAATTAAATAAAATTG
15188808 AAAAATTAAATAATTAAATAAAATTG
1 AAAAATTAAATAATTAAATAAAATTG
15188834 AAA
1 AAA
15188837 TTTAGGAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 3 0.12
25 14 0.54
26 9 0.35
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (26 bp):
AAAAATTAAATAATTAAATAAAATTG
Found at i:15194768 original size:27 final size:27
Alignment explanation
Indices: 15194728--15195087 Score: 389
Period size: 27 Copynumber: 13.4 Consensus size: 27
15194718 ATTCGTGGGC
*
15194728 AAATGACCTG-AATAACCTCGAAAGGTA
1 AAATGACC-GAAATACCCTCGAAAGGTA
*
15194755 AAATGACCGAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAAGGTA
*
15194782 AAATGACCGAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAAGGTA
15194809 AAATGACCGAAATACCC-CGAAAGGTA
1 AAATGACCGAAATACCCTCGAAAGGTA
* *
15194835 AAATGACTGAAATACCC-CTGAAAGATA
1 AAATGACCGAAATACCCTC-GAAAGGTA
*
15194862 AAATGACCGAAATACCCTTG-AAGGATA
1 AAATGACCGAAATACCCTCGAAAGG-TA
*
15194889 AAATGACCAAAATACCCTCGAAAGGTA
1 AAATGACCGAAATACCCTCGAAAGGTA
* * *
15194916 AAATGATCGGAATACCCT-AAAAGGATA
1 AAATGACCGAAATACCCTCGAAAGG-TA
* * * *
15194943 AAATGATCAAAATACCCTCGTAGGGTA
1 AAATGACCGAAATACCCTCGAAAGGTA
* *
15194970 AAATAACCGAAATACCC-CGGAAGGGTA
1 AAATGACCGAAATACCCTC-GAAAGGTA
*
15194997 AAATGACCGAAATACCC-CGAAGGGTA
1 AAATGACCGAAATACCCTCGAAAGGTA
* *
15195023 AAATAACTGAAATACCC-CTG-AAGGATA
1 AAATGACCGAAATACCCTC-GAAAGG-TA
**
15195050 AAATGACTAAAATACCCTC-AAAGGGTA
1 AAATGACCGAAATACCCTCGAAA-GGTA
15195077 AAATGACCGAA
1 AAATGACCGAA
15195088 GGGTAAAATG
Statistics
Matches: 289, Mismatches: 31, Indels: 26
0.84 0.09 0.08
Matches are distributed among these distances:
26 62 0.21
27 217 0.75
28 10 0.03
ACGTcount: A:0.45, C:0.20, G:0.19, T:0.16
Consensus pattern (27 bp):
AAATGACCGAAATACCCTCGAAAGGTA
Found at i:15194801 original size:54 final size:53
Alignment explanation
Indices: 15194728--15195731 Score: 906
Period size: 54 Copynumber: 18.8 Consensus size: 53
15194718 ATTCGTGGGC
* *
15194728 AAATGACCTG-AATAACCTCGAAAGGTAAAATGACCGAAATACCCTCGAAGGGTA
1 AAATGACC-GAAATACCCTCGAAGGGTAAAATGACCGAAATACCC-CGAAGGGTA
*
15194782 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCCGAAAGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCCGAAGGGTA
* * * * *
15194835 AAATGACTGAAATACCC-CTGAAAGATAAAATGACCGAAATACCCTTGAAGGATA
1 AAATGACCGAAATACCCTC-GAAGGGTAAAATGACCGAAATACCC-CGAAGGGTA
* * * * ** *
15194889 AAATGACCAAAATACCCTCGAAAGGTAAAATGATCGGAATACCCTAAAAGGATA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCC-CGAAGGGTA
* * * *
15194943 AAATGATCAAAATACCCTCGTAGGGTAAAATAACCGAAATACCCCGGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCC-GAAGGGTA
* * *
15194997 AAATGACCGAAATACCC-CGAAGGGTAAAATAACTGAAATACCCCTGAAGGATA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCC-GAAGGGTA
** *
15195050 AAATGACTAAAATACCCTCAAAGGGTAAAAT----G----A--CCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCCGAAGGGTA
* * * *
15195093 AAATGACCAAAATACCCCCGAAGGGTAAACTGACCGAAATACCCTCGAAGGATA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCC-CGAAGGGTA
* * * * * * *
15195147 AAATGATCGAAATAACCTTGAAGGGCAAAATAACTGACATACCCCCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATA-CCCCGAAGGGTA
* * *
15195201 AAATGATCGAAATACCC-CGATGGGTAAAATGACTGAAATACCCCTGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCC-GAAGGGTA
* ** * * * *
15195254 AAATAATTGAAATACCCCCGAAAGGTAAAATAACCGAAATACCCCCGAAGGGTT
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATA-CCCCGAAGGGTA
* * ** *
15195308 AAATGATCGAAATACCCCCCGAAGGGTAAAATGACCGAAATACCCTTAAAGGATA
1 AAATGACCGAAATA-CCCTCGAAGGGTAAAATGACCGAAATACCC-CGAAGGGTA
* * ** * *** * *
15195363 AAATAACTGAAATACCCTCGAAGGACAAAATAATAAAAAGACCCCCGAAAGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATA-CCCCGAAGGGTA
* *
15195417 AAATGACTGAAATACCC-CTGAAGGGTAAAATGACCAAAATACCCCTGAAGGGTA
1 AAATGACCGAAATACCCTC-GAAGGGTAAAATGACCGAAATACCCC-GAAGGGTA
* * * * * *
15195471 AACTGTCTGAAATACCCTCGAAGGATAAAATGATCTG-AATACCCTTGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGA-CCGAAATACCC-CGAAGGGTA
* * * *
15195525 AAATGACTGACATACCCCCGAAGGGTAAAATGACCGAAATACCCCGAATGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCCGAAGGGTA
* * * * * * *
15195578 AAATAACTGAAATACCCCCGAAAGGTAAAATAATCGAAATACCCCTAAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCC-GAAGGGTA
* ** *
15195632 AAATGACCGAAATACCCCCCGAAGGGTAAAATGACTAAAATACCCACAAAGGGTA
1 AAATGACCGAAATA-CCCTCGAAGGGTAAAATGACCGAAATACCC-CGAAGGGTA
* * * * *
15195687 AAATGACTGAAATATCCTCGAACGGTAAAATGACTGATATACCCC
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCC
15195732 TAGGAGTCGA
Statistics
Matches: 788, Mismatches: 129, Indels: 67
0.80 0.13 0.07
Matches are distributed among these distances:
43 34 0.04
44 2 0.00
46 1 0.00
47 1 0.00
50 1 0.00
51 1 0.00
52 5 0.01
53 192 0.24
54 450 0.57
55 100 0.13
56 1 0.00
ACGTcount: A:0.44, C:0.21, G:0.19, T:0.17
Consensus pattern (53 bp):
AAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCCGAAGGGTA
Found at i:15194959 original size:81 final size:81
Alignment explanation
Indices: 15194728--15195719 Score: 852
Period size: 81 Copynumber: 12.4 Consensus size: 81
15194718 ATTCGTGGGC
* *
15194728 AAATGACCTG-AATAACCTCGAAAGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGA
1 AAATGACC-GAAATACCCTCGAAAGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGA
*
15194792 AATACCCTCGAAGGGTA
65 AATACCCCCGAAGGGTA
* *
15194809 AAATGACCGAAATACCC-CGAAAGGTAAAATGA-CTGAAATACCC-CTGAAAGATAAAATGACCG
1 AAATGACCGAAATACCCTCGAAAGGTAAAATGATC-GAAATACCCTC-GAAGGGTAAAATGACCG
** *
15194871 AAATACCCTTGAAGGATA
64 AAATACCCCCGAAGGGTA
* * ** * * *
15194889 AAATGACCAAAATACCCTCGAAAGGTAAAATGATCGGAATACCCTAAAAGGATAAAATGATCAAA
1 AAATGACCGAAATACCCTCGAAAGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAA
* *
15194954 ATACCCTCGTAGGGTA
66 ATACCCCCGAAGGGTA
* * * * *
15194970 AAATAACCGAAATACCC-CGGAAGGGTAAAATGACCGAAATACCC-CGAAGGGTAAAATAACTGA
1 AAATGACCGAAATACCCTC-GAAAGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGA
* *
15195033 AATACCCCTGAAGGATA
65 AATACCCCCGAAGGGTA
** *
15195050 AAATGACTAAAATACCCTC-AAAGGGT-AAA--AT-G----A--C-CGAAGGGTAAAATGACCAA
1 AAATGACCGAAATACCCTCGAAA-GGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGA
15195103 AATACCCCCGAAGGGTA
65 AATACCCCCGAAGGGTA
* * * * * *
15195120 AACTGACCGAAATACCCTCG-AAGGATAAAATGATCGAAATAACCTTGAAGGGCAAAATAACTGA
1 AAATGACCGAAATACCCTCGAAAGG-TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGA
*
15195184 CATACCCCCGAAGGGTA
65 AATACCCCCGAAGGGTA
* ** * **
15195201 AAATGATCGAAATACCC-CGATGGGTAAAATGA-CTGAAATACCC-CTGAAGGGTAAAATAATTG
1 AAATGACCGAAATACCCTCGAAAGGTAAAATGATC-GAAATACCCTC-GAAGGGTAAAATGACCG
*
15195263 AAATACCCCCGAAAGGTA
64 AAATACCCCCGAAGGGTA
* * * * *
15195281 AAATAACCGAAATACCCCCGAAGGGTTAAATGATCGAAATACCCCCCGAAGGGTAAAATGACCGA
1 AAATGACCGAAATACCCTCGAAAGGTAAAATGATCGAAATA-CCCTCGAAGGGTAAAATGACCGA
*** *
15195346 AATACCCTTAAAGGATA
65 AATACCCCCGAAGGGTA
* * * * ** * * * *
15195363 AAATAACTGAAATACCCTCG-AAGGACAAAATAATAAAAAGACCCCCGAAAGGTAAAATGACTGA
1 AAATGACCGAAATACCCTCGAAAGG-TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGA
*
15195427 AATACCCCTGAAGGGTA
65 AATACCCCCGAAGGGTA
* * * * *
15195444 AAATGACCAAAATACCC-CTGAAGGGTAAACTG-TCTGAAATACCCTCGAAGGATAAAATGATCT
1 AAATGACCGAAATACCCTC-GAAAGGTAAAATGATC-GAAATACCCTCGAAGGGTAAAATGA-CC
**
15195507 G-AATACCCTTGAAGGGTA
63 GAAATACCCCCGAAGGGTA
* * * * * * * *
15195525 AAATGACTGACATACCCCCGAAGGGTAAAATGACCGAAATACCC-CGAATGGTAAAATAACTGAA
1 AAATGACCGAAATACCCTCGAAAGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAA
*
15195589 ATACCCCCGAAAGGTA
66 ATACCCCCGAAGGGTA
* * * * * **
15195605 AAATAATCGAAATACCC-CTAAAGGGTAAAATGACCGAAATACCCCCCGAAGGGTAAAATGACTA
1 AAATGACCGAAATACCCTCGAAA-GGTAAAATGATCGAAATA-CCCTCGAAGGGTAAAATGACCG
* *
15195669 AAATACCCACAAAGGGTA
64 AAATACCCCCGAAGGGTA
* * *
15195687 AAATGACTGAAATATCCTCGAACGGTAAAATGA
1 AAATGACCGAAATACCCTCGAAAGGTAAAATGA
15195720 CTGATATACC
Statistics
Matches: 741, Mismatches: 129, Indels: 81
0.78 0.14 0.09
Matches are distributed among these distances:
69 2 0.00
70 51 0.07
71 3 0.00
72 1 0.00
73 2 0.00
74 1 0.00
76 1 0.00
77 1 0.00
78 1 0.00
79 14 0.02
80 239 0.32
81 300 0.40
82 121 0.16
83 4 0.01
ACGTcount: A:0.44, C:0.21, G:0.19, T:0.16
Consensus pattern (81 bp):
AAATGACCGAAATACCCTCGAAAGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAA
ATACCCCCGAAGGGTA
Found at i:15195091 original size:16 final size:16
Alignment explanation
Indices: 15195070--15195100 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
15195060 AATACCCTCA
15195070 AAGGGTAAAATGACCG
1 AAGGGTAAAATGACCG
15195086 AAGGGTAAAATGACC
1 AAGGGTAAAATGACC
15195101 AAAATACCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.13, G:0.29, T:0.13
Consensus pattern (16 bp):
AAGGGTAAAATGACCG
Found at i:15195105 original size:43 final size:43
Alignment explanation
Indices: 15195042--15195130 Score: 133
Period size: 43 Copynumber: 2.1 Consensus size: 43
15195032 AAATACCCCT
* *
15195042 GAAGGATAAAATGACTAAAATACCCTCAAAGGGTAAAATGACC
1 GAAGGATAAAATGACCAAAATACCCCCAAAGGGTAAAATGACC
* * *
15195085 GAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAACTGACC
1 GAAGGATAAAATGACCAAAATACCCCCAAAGGGTAAAATGACC
15195128 GAA
1 GAA
15195131 ATACCCTCGA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.13
Consensus pattern (43 bp):
GAAGGATAAAATGACCAAAATACCCCCAAAGGGTAAAATGACC
Found at i:15195114 original size:27 final size:27
Alignment explanation
Indices: 15195083--15195731 Score: 620
Period size: 27 Copynumber: 24.0 Consensus size: 27
15195073 GGTAAAATGA
*
15195083 CCGAAGGGTAAAATGACCAAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
*
15195110 CCGAAGGGTAAACTGACCGAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* * * *
15195137 TCGAAGGATAAAATGATCGAAATAACC
1 CCGAAGGGTAAAATGACCGAAATACCC
** * * * *
15195164 TTGAAGGGCAAAATAACTGACATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
*
15195191 CCGAAGGGTAAAATGATCGAAATA-CC
1 CCGAAGGGTAAAATGACCGAAATACCC
* *
15195217 CCGATGGGTAAAATGACTGAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* * **
15195244 CTGAAGGGTAAAATAATTGAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* *
15195271 CCGAAAGGTAAAATAACCGAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* *
15195298 CCGAAGGGTTAAATGATCGAAATACCCC
1 CCGAAGGGTAAAATGACCGAAATA-CCC
15195326 CCGAAGGGTAAAATGACCGAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
*** * * *
15195353 TTAAAGGATAAAATAACTGAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* ** * *** *
15195380 TCGAAGGACAAAATAATAAAAAGACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* *
15195407 CCGAAAGGTAAAATGACTGAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* *
15195434 CTGAAGGGTAAAATGACCAAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* * * *
15195461 CTGAAGGGTAAACTGTCTGAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* * *
15195488 TCGAAGGATAAAATGATCTG-AATACCC
1 CCGAAGGGTAAAATGA-CCGAAATACCC
** * *
15195515 TTGAAGGGTAAAATGACTGACATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
15195542 CCGAAGGGTAAAATGACCGAAATA-CC
1 CCGAAGGGTAAAATGACCGAAATACCC
* * *
15195568 CCGAATGGTAAAATAACTGAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* * *
15195595 CCGAAAGGTAAAATAATCGAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
**
15195622 CTAAAGGGTAAAATGACCGAAATACCCC
1 CCGAAGGGTAAAATGACCGAAATA-CCC
**
15195650 CCGAAGGGTAAAATGACTAAAATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* * * *
15195677 ACAAAGGGTAAAATGACTGAAATATCC
1 CCGAAGGGTAAAATGACCGAAATACCC
* * * *
15195704 TCGAACGGTAAAATGACTGATATACCC
1 CCGAAGGGTAAAATGACCGAAATACCC
15195731 C
1 C
15195732 TAGGAGTCGA
Statistics
Matches: 510, Mismatches: 106, Indels: 12
0.81 0.17 0.02
Matches are distributed among these distances:
26 49 0.10
27 410 0.80
28 51 0.10
ACGTcount: A:0.43, C:0.22, G:0.19, T:0.17
Consensus pattern (27 bp):
CCGAAGGGTAAAATGACCGAAATACCC
Found at i:15195133 original size:70 final size:70
Alignment explanation
Indices: 15195013--15195157 Score: 191
Period size: 70 Copynumber: 2.1 Consensus size: 70
15195003 CCGAAATACC
** * * *
15195013 CCGAAGGGTAAAATAACTGAAATACCCCTGAAGGATAAAATGACTAAAATACCCTCAAAGGGTAA
1 CCGAAGGGTAAAATAACCAAAATACCCCCGAAGGATAAAATGACCAAAATACCCTCAAAGGATAA
15195078 AATGA
66 AATGA
* * * * *
15195083 CCGAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAACTGACCGAAATACCCTCGAAGGATAA
1 CCGAAGGGTAAAATAACCAAAATACCCCCGAAGGATAAAATGACCAAAATACCCTCAAAGGATAA
15195148 AATGA
66 AATGA
*
15195153 TCGAA
1 CCGAA
15195158 ATAACCTTGA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.45, C:0.20, G:0.20, T:0.15
Consensus pattern (70 bp):
CCGAAGGGTAAAATAACCAAAATACCCCCGAAGGATAAAATGACCAAAATACCCTCAAAGGATAA
AATGA
Found at i:15196218 original size:28 final size:28
Alignment explanation
Indices: 15196106--15196212 Score: 153
Period size: 28 Copynumber: 3.8 Consensus size: 28
15196096 ACTGCACTGT
* *
15196106 ACTGTTACTGTATTGGGCTAAGGCTCAG
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
*
15196134 ACTGTTACTGTATTGGGCTAAGACCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
*
15196162 ACTGTTGCTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
*
15196190 A-TGATTATTGTATTGGGCTAAGG
1 ACTG-TTACTGTATTGGGCTAAGG
15196213 GTCACACTAT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
27 2 0.03
28 69 0.97
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:15196227 original size:28 final size:28
Alignment explanation
Indices: 15196110--15196224 Score: 133
Period size: 28 Copynumber: 4.1 Consensus size: 28
15196100 CACTGTACTG
* * *
15196110 TTACTGTATTGGGCTAAGGCTCAGACTG
1 TTACTGTATTGGGCTAAGGCCCACACTA
* *
15196138 TTACTGTATTGGGCTAAGACCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTA
*
15196166 TTGCTGTATTGGGCTAAGGCCCACA-TGA
1 TTACTGTATTGGGCTAAGGCCCACACT-A
* **
15196194 TTATTGTATTGGGCTAAGGGTCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
15196222 TTA
1 TTA
15196225 TTGAAATGGG
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
27 1 0.01
28 73 0.97
29 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.32
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTA
Found at i:15196234 original size:28 final size:28
Alignment explanation
Indices: 15196175--15196234 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
15196165 GTTGCTGTAT
* *
15196175 TGGGCTAAGGCCCACATGATTATTGTAT
1 TGGGCTAAGGCCCACATGATTATTGAAA
**
15196203 TGGGCTAAGGGTCACACT-ATTATTGAAA
1 TGGGCTAAGGCCCACA-TGATTATTGAAA
15196231 TGGG
1 TGGG
15196235 TTAAAACCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 26 0.96
29 1 0.04
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (28 bp):
TGGGCTAAGGCCCACATGATTATTGAAA
Done.