Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 63 of 168
Found at i:18231767 original size:17 final size:16
Alignment explanation
Indices: 18231747--18231790 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
18231737 TTCGAATTTA
18231747 AAAAAATAAAATAAAAT
1 AAAAAATAAAAT-AAAT
* *
18231764 AAAAAAGAACATAAAT
1 AAAAAATAAAATAAAT
*
18231780 ACAAAATAAAA
1 AAAAAATAAAA
18231791 ATACTTAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.14
Consensus pattern (16 bp):
AAAAAATAAAATAAAT
Found at i:18232119 original size:21 final size:20
Alignment explanation
Indices: 18232079--18232126 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
18232069 CTTGATTTTG
*
18232079 GGCTGCTCTCTGGGCTGCTA
1 GGCTGCTCTCTGGCCTGCTA
*
18232099 GGCTGCTACTGTGGCCTGCTA
1 GGCTGCT-CTCTGGCCTGCTA
*
18232120 AGCTGCT
1 GGCTGCT
18232127 GGTGCTGTCG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.08, C:0.29, G:0.33, T:0.29
Consensus pattern (20 bp):
GGCTGCTCTCTGGCCTGCTA
Found at i:18232244 original size:10 final size:10
Alignment explanation
Indices: 18232216--18232255 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
18232206 CTTTCCCCCT
*
18232216 TTCTTCTTCC
1 TTCTTCTTTC
18232226 TTCTTCTTTC
1 TTCTTCTTTC
18232236 TTCTTCTTT-
1 TTCTTCTTTC
18232245 TT-TTCTTTC
1 TTCTTCTTTC
18232254 TT
1 TT
18232256 TTTTCTTCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 6 0.21
9 4 0.14
10 18 0.64
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (10 bp):
TTCTTCTTTC
Found at i:18232264 original size:10 final size:10
Alignment explanation
Indices: 18232215--18232264 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
18232205 TCTTTCCCCC
*
18232215 TTTCTTCTTC
1 TTTCTTCTTT
*
18232225 CTTCTTCTTT
1 TTTCTTCTTT
*
18232235 CTTCTTCTTTT
1 TTTCTTC-TTT
18232246 TTTCTTTCTTT
1 TTTC-TTCTTT
18232257 TTTCTTCT
1 TTTCTTCT
18232265 CCTTTGTTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 19 0.54
11 13 0.37
12 3 0.09
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTCTTCTTT
Found at i:18232375 original size:14 final size:15
Alignment explanation
Indices: 18232352--18232394 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
18232342 TCTCCTCCCA
*
18232352 TTTTCCTTTTCTT-C
1 TTTTCTTTTTCTTCC
18232366 TTTTCTTTTTCTTCC
1 TTTTCTTTTTCTTCC
*
18232381 TTTGTCTTTCTCTT
1 TTT-TCTTTTTCTT
18232395 TTATTTTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.48
15 4 0.16
16 9 0.36
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (15 bp):
TTTTCTTTTTCTTCC
Found at i:18232431 original size:24 final size:24
Alignment explanation
Indices: 18232398--18232448 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
18232388 TTCTCTTTTA
18232398 TTTTTGTTTG-TTACTTGCTTCTTG
1 TTTTTGTTTGCTT-CTTGCTTCTTG
* * *
18232422 TTTTTTTTTGCTTCTTGGTTGTTG
1 TTTTTGTTTGCTTCTTGCTTCTTG
18232446 TTT
1 TTT
18232449 GCTTTACTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.02, C:0.10, G:0.18, T:0.71
Consensus pattern (24 bp):
TTTTTGTTTGCTTCTTGCTTCTTG
Found at i:18232434 original size:17 final size:18
Alignment explanation
Indices: 18232412--18232452 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
18232402 TGTTTGTTAC
* *
18232412 TTGCTTCTT-GTTTTTTT
1 TTGCTTCTTGGTTGTTGT
18232429 TTGCTTCTTGGTTGTTGT
1 TTGCTTCTTGGTTGTTGT
18232447 TTGCTT
1 TTGCTT
18232453 TACTAGGTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.00, C:0.12, G:0.20, T:0.68
Consensus pattern (18 bp):
TTGCTTCTTGGTTGTTGT
Found at i:18232861 original size:59 final size:60
Alignment explanation
Indices: 18232798--18232914 Score: 200
Period size: 59 Copynumber: 2.0 Consensus size: 60
18232788 TCAAGGGTCC
* **
18232798 AAATGTAATTTTGAGAAAGTTTAGGGGTTAAAATTTAA-TTTAGAAAAGTTTAGGGGTTG
1 AAATGTAATTTTGAGAAAGTTTAGGGGTCAAAATGCAATTTTAGAAAAGTTTAGGGGTTG
18232857 AAATGTAATTTTGAGAAAGTTTAGGGGTCAAAATGCAATTTTAGAAAAGTTTAGGGGT
1 AAATGTAATTTTGAGAAAGTTTAGGGGTCAAAATGCAATTTTAGAAAAGTTTAGGGGT
18232915 CAAAATGCAA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
59 35 0.65
60 19 0.35
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.35
Consensus pattern (60 bp):
AAATGTAATTTTGAGAAAGTTTAGGGGTCAAAATGCAATTTTAGAAAAGTTTAGGGGTTG
Found at i:18232912 original size:89 final size:89
Alignment explanation
Indices: 18232752--18232920 Score: 241
Period size: 89 Copynumber: 1.9 Consensus size: 89
18232742 TAATGGCAGC
* * *
18232752 AAAACTTTTGGGGTCGAAACGTAATTTTGAGAAAGTTCAAGGGTCCAAATGTAATTTTGAGAAAG
1 AAAACTTTAGGGGTCGAAACGTAATTTTGAGAAAGTTCAAGGGTCAAAATGCAATTTTGAGAAAG
*
18232817 TTTAGGGGTTAAAATTTAATTTAG
66 TTTAGGGGTCAAAATTTAATTTAG
* * * * *
18232841 AAAAGTTTAGGGGTTGAAATGTAATTTTGAGAAAGTTTAGGGGTCAAAATGCAATTTT-AGAAAA
1 AAAACTTTAGGGGTCGAAACGTAATTTTGAGAAAGTTCAAGGGTCAAAATGCAATTTTGAG-AAA
18232905 GTTTAGGGGTCAAAAT
65 GTTTAGGGGTCAAAAT
18232921 GCAAAAAAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
88 2 0.03
89 68 0.97
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.33
Consensus pattern (89 bp):
AAAACTTTAGGGGTCGAAACGTAATTTTGAGAAAGTTCAAGGGTCAAAATGCAATTTTGAGAAAG
TTTAGGGGTCAAAATTTAATTTAG
Found at i:18232924 original size:30 final size:30
Alignment explanation
Indices: 18232761--18232921 Score: 200
Period size: 30 Copynumber: 5.4 Consensus size: 30
18232751 CAAAACTTTT
* * *
18232761 GGGGTCGAAACGTAATTTTGAGAAAGTTCA
1 GGGGTCAAAATGTAATTTTGAGAAAGTTTA
* *
18232791 AGGGTCCAAATGTAATTTTGAGAAAGTTTA
1 GGGGTCAAAATGTAATTTTGAGAAAGTTTA
* * *
18232821 GGGGTTAAAATTTAATTTAGA-AAAGTTTA
1 GGGGTCAAAATGTAATTTTGAGAAAGTTTA
**
18232850 GGGGTTGAAATGTAATTTTGAGAAAGTTTA
1 GGGGTCAAAATGTAATTTTGAGAAAGTTTA
*
18232880 GGGGTCAAAATGCAATTTT-AGAAAAGTTTA
1 GGGGTCAAAATGTAATTTTGAG-AAAGTTTA
18232910 GGGGTCAAAATG
1 GGGGTCAAAATG
18232922 CAAAAAAATA
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
29 28 0.25
30 86 0.75
ACGTcount: A:0.37, C:0.05, G:0.27, T:0.32
Consensus pattern (30 bp):
GGGGTCAAAATGTAATTTTGAGAAAGTTTA
Found at i:18233463 original size:77 final size:76
Alignment explanation
Indices: 18233127--18234807 Score: 1553
Period size: 77 Copynumber: 21.9 Consensus size: 76
18233117 CTCGGCGTGC
* * *
18233127 GACCCGAGGCTCAACTCACCTATCG-TA-AT-AGTTGATTTTTG--AAAACTAGAAATTGAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAC-AGAAATTAAAAAA
*
18233187 TACCTCACGATGT
65 TACCTC-GGATGT
* ** * * * * * *
18233200 GACCTGATCCTCAACTCATCTCTCGCACTATGAGTTTATTTTTTGAAAGAATAGAAATTGAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAACAGAAATTAAAAAA
18233265 TACCTCAGGATGT
65 TACCTC-GGATGT
* * *
18233278 GACCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTG-AAAAACATGAATTTAAAAGA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACA-GAAATT-AAA-A
18233342 AATACCTCGGCATAGT
63 AATACCTCGG-AT-GT
* * *
18233358 G-TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAATAGAAATT-AAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAAACAGAAATTAAAAAA
18233421 TACCTCGGTATGT
65 TACCTCGG-ATGT
* ** * *
18233434 GCCCCGAGGCTCAACTCACCTCTAACAATATGAGTTAATTTTTG-AAAAACAAAAATTTAAAAGA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAA-TT-AAA-A
18233498 AATACCTCGGCATG-
63 AATACCTCGG-ATGT
* * * *
18233512 G-TCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTG-AAAAACAGAATTTTAAAAG
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAACAGAA-ATTAAAA-
*
18233575 AATACCTCGGCATGC
63 AATACCTCGG-ATGT
* * * *
18233590 GACCCGAGGCTCAACTCACCCCACGCAGTATGAGTTGATTTTTG-AAAAACA-AGAATTGAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGA-AATTAAAAAA
*
18233653 TACCTCGG-CGT
65 TACCTCGGATGT
* * * *
18233664 GACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTAATTTTTGAAAAATATA-AATTTAAAAGA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-ACAGAAATT-AAA-A
*
18233728 AATACCTCAGCATG-
63 AATACCTC-GGATGT
* * *
18233742 G-TCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAAACAGAAATTAAAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATT--AAAAA
18233806 ATACCTCGGCA--T
64 ATACCTCGG-ATGT
* * * *
18233818 GACCCAAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTG-AAAAACAGGAATTTAAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACA-GAAATT-AAAAA
* *
18233882 ATACCTCAG-CGT
64 ATACCTCGGATGT
* *
18233894 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAGA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAA-TT-AAA-A
*
18233958 AATACCTCGG-CGT
63 AATACCTCGGATGT
*
18233971 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAACAAAAATTTAAAAGA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAA-TT-AAA-A
*
18234035 AATACCTCAGCATG-
63 AATACCTC-GGATGT
* * *
18234049 G-TCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAA-TT-AAAAA
*
18234112 ATACCTCGG-CGT
64 ATACCTCGGATGT
* *
18234124 GACCC-ATGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAACAGAAATTTAAAAA
1 GACCCGA-GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAA-TT-AAAA
* *
18234188 AATACCTCAG-CGT
63 AATACCTCGGATGT
* * * * *
18234201 GACTCGAGGCTCAACTCACCTTTCGTATTATGAGTTGATTTTTG-AAAAACATAAATTTAAAAGA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAA-TT-AAA-A
*
18234265 AATACCTCGG-CGT
63 AATACCTCGGATGT
* *
18234278 GACCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTG-AAAAACATAAATTTAAAAGA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAA-TT-AAA-A
*
18234342 AATACCTCAGCATG-
63 AATACCTC-GGATGT
* * * * * ** *
18234356 G-TCCAAGGGTCAACTCACCTCTTGCAATATGAGTTCATCCTTGAAAAAACAGAAATTAAAAATT
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATTAAAAAAT
*
18234420 ACCTCGG-CGT
66 ACCTCGGATGT
* * *
18234430 GACCCAAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAACAGAAATTTAAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAA-TT-AAAAA
* *
18234495 ATGCCTCAGCA--T
64 ATACCTC-GGATGT
* * *
18234507 GACCCGAGGCTCAACTCACCTATCGTATTATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAGA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAA-TT-AAA-A
*
18234571 AATACCTC-GACGT
63 AATACCTCGGATGT
* * *
18234584 GACCCGAGGCTCAACTCACCTCTTGTATTATGAGTTGATTTTTGAAAAAACAGAAATTAAAAAGA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATT--AAA-A
18234649 AATACCTCGGCATGT
63 AATACCTCGG-ATGT
* * *** *
18234664 G-TCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTTGAAAACAAAAATTTGAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAAACAGAAA-TT-AAA
*
18234728 GAAATACCTTGGCATG-
62 -AAATACCTCGG-ATGT
* * * *
18234744 G-TCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTG-AAAAACAAAAATTGAAAAAT
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATTAAAAAAT
18234807 A
66 A
18234808 TAATTCTTGA
Statistics
Matches: 1388, Mismatches: 153, Indels: 133
0.83 0.09 0.08
Matches are distributed among these distances:
73 21 0.02
74 48 0.03
75 81 0.06
76 200 0.14
77 672 0.48
78 148 0.11
79 131 0.09
80 47 0.03
81 38 0.03
82 2 0.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (76 bp):
GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATTAAAAAAT
ACCTCGGATGT
Found at i:18233694 original size:307 final size:306
Alignment explanation
Indices: 18233209--18234793 Score: 2049
Period size: 307 Copynumber: 5.1 Consensus size: 306
18233199 TGACCTGATC
* * * * * *
18233209 CTCAACTCATCTCTCGCACTATGAGTTTATTTTTTGAAAGAATAGAAATT-GAAAAATACCTCAG
1 CTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAA-AACAGAATTTAAAAAAATACCTCAG
* * ** * *
18233273 GATGTGACCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACATGAATTTAA
64 CATGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACAAGAATTTAA
* *
18233338 AAGAAATACCTCGGCATAGTG-TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
129 AAGAAATACCTCGGC---GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
* * * * * **
18233402 AAAAAATAGAAATT-AA-AAATACCTCGGTATGTGCCCCGAGGCTCAACTCACCTCTAACAATAT
191 AAAAAATA-AATTTAAAGAAATACCTCAGCATG-G-TCCAAGGCTCAACTCACCTCTTGCAATAT
* **
18233465 GAGTTAATTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCATGGTCCAAGG
253 GAGTTAATTTTTGAAAAACAGAAATTTAAAA-AAATACCTCGGCATGACCCAAGG
* * * *
18233520 CTCAACTCACCTCTTGCAATATGAGTTGATTTTTTGAAAAACAGAATTTTAAAAGAATACCTCGG
1 CTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACAGAA-TTTAAAAAAATACCTCAG
* * * * * *
18233585 CATGCGACCCGAGGCTCAACTCACCCCACGCAGTATGAGTTGATTTTTGAAAAACAAGAA-TT-G
64 CATGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACAAGAATTTAA
* *
18233648 AA-AAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTAATTTTTGAAAA
129 AAGAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
*
18233712 ATATAAATTTAAAAGAAATACCTCAGCATGGTCCAAGGCTCAACTCACCTCTTGCAATATGAGTT
194 AAATAAATTT-AAAGAAATACCTCAGCATGGTCCAAGGCTCAACTCACCTCTTGCAATATGAGTT
* *
18233777 GATTTTTGAAAAAACAGAAATTAAAAAAAATACCTCGGCATGACCCAAGG
258 AATTTTTG-AAAAACAGAAATTTAAAAAAATACCTCGGCATGACCCAAGG
*
18233827 CTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACAGGAATTTAAAAAAATACCTCAGC
1 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACA-GAATTTAAAAAAATACCTCAGC
18233892 --GTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAC-AGAAATTTAA
65 ATGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACAAG-AATTTAA
18233954 AAGAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
129 AAGAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
18234019 ACAA-AAATTTAAAAGAAATACCTCAGCATGGTCCAAGGCTCAACTCACCTCTTGCAATATGAGT
194 A-AATAAATTT-AAAGAAATACCTCAGCATGGTCCAAGGCTCAACTCACCTCTTGCAATATGAGT
* * *
18234083 TGATTTTTGAAAAACAGAAATTTAAAAAAATACCTCGGCGTGACCCATGG
257 TAATTTTTGAAAAACAGAAATTTAAAAAAATACCTCGGCATGACCCAAGG
*
18234133 CTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAACAGAAATTTAAAAAAATACCTCAG
1 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACAG-AATTTAAAAAAATACCTCAG
* *
18234198 C--GTGACTCGAGGCTCAACTCACCTTTCGTATTATGAGTTGATTTTTGAAAAACATA-AATTTA
64 CATGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACA-AGAATTTA
*
18234260 AAAGAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAA
128 AAAGAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
* *
18234325 AACATAAATTTAAAAGAAATACCTCAGCATGGTCCAAGGGTCAACTCACCTCTTGCAATATGAGT
193 AAAATAAATTT-AAAGAAATACCTCAGCATGGTCCAAGGCTCAACTCACCTCTTGCAATATGAGT
* ** * *
18234390 TCATCCTTGAAAAAACAGAAA-TT-AAAAATTACCTCGGCGTGACCCAAGG
257 TAATTTTTG-AAAAACAGAAATTTAAAAAAATACCTCGGCATGACCCAAGG
* *
18234439 CTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAACAGAAATTTAAAAAAATGCCTCAG
1 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACAG-AATTTAAAAAAATACCTCAG
*
18234504 CA--TGACCCGAGGCTCAACTCACCTATCGTATTATGAGTTGATTTTTGAAAAAC-AGAAATTTA
64 CATGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACAAG-AATTTA
* * * *
18234566 AAAGAAATACCTCGACGTGACCCGAGGCTCAACTCACCTCTTGTATTATGAGTTGATTTTTGAAA
128 AAAGAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
* * * * **
18234631 AAACAGAAATTAAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCACAATATGA
193 AAA-ATAAATT-TAAAGAAATACCTCAGCATG-GTCCAAGGCTCAACTCACCTCTTGCAATATGA
* * * * ** *
18234696 GTTGATTTTTTTTTG-AAAACAAAAATTTGAAAGAAATACCTTGGCATGGTCCGAGG
255 GTT-A---ATTTTTGAAAAACAGAAATTT-AAAAAAATACCTCGGCATGACCCAAGG
* *
18234752 CTCAACTCACCCCTCGCAATATGAGTTGATTTTTGAAAAACA
1 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACA
18234794 AAAATTGAAA
Statistics
Matches: 1149, Mismatches: 93, Indels: 63
0.88 0.07 0.05
Matches are distributed among these distances:
303 2 0.00
304 50 0.04
305 2 0.00
306 320 0.28
307 504 0.44
308 62 0.05
309 26 0.02
310 17 0.01
311 41 0.04
312 74 0.06
313 51 0.04
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.28
Consensus pattern (306 bp):
CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAGAATTTAAAAAAATACCTCAGCA
TGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACAAGAATTTAAAA
GAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
ATAAATTTAAAGAAATACCTCAGCATGGTCCAAGGCTCAACTCACCTCTTGCAATATGAGTTAAT
TTTTGAAAAACAGAAATTTAAAAAAATACCTCGGCATGACCCAAGG
Found at i:18233758 original size:230 final size:232
Alignment explanation
Indices: 18233117--18234805 Score: 1886
Period size: 230 Copynumber: 7.3 Consensus size: 232
18233107 TCGAGAACAG
* ** * *
18233117 CTCGGCGTGCGACCCGAGGCTCAACTCACCTATCG-TA-AT-AGTTGATTTTTG-AAAACTAGAA
1 CTCGGCATG-GACCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTGAAAAACAAGAA
* ** * ** * * *
18233178 A-TT-GAAAAATACCTCACGATGTGACCTGATCCTCAACTCATCTCTCGCACTATGAGTTTATTT
65 ATTTAAAAAAATACCT--CGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG-TTAATT
* *
18233241 TTTGAAAGAATAGAAA-TT-GAA-AAATACCTCAGG-ATGTGACCCAAGGCTCAACTCACCTCTC
127 TTTGAAA-AACAGAAATTTAAAAGAAATACCTC-GGCATG-G-CCCAAGGCTCAACTCACCTCTC
*
18233302 ACAATATGAGTTGATTTTTGAAAAACATG-AATTTAAAAGAAATAC
188 GCAATATGAGTTGATTTTTGAAAAACA-GAAATTTAAAAGAAATAC
* * * *
18233347 CTCGGCATAGTG-TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAATAG
1 CTCGGCAT-G-GACCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTGAAAAACA-AG
* * **
18233411 AAA-TT--AAAAATACCTCGGTATGTGCCCCGAGGCTCAACTCACCTCTAACAATATGAGTTAAT
63 AAATTTAAAAAAATACCTCGG--CGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
* * *
18233473 TTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCATGGTCCAAGGCTCAACTCACCTCTTGCA
126 TTTTGAAAAACAGAAATTTAAAAGAAATACCTCGGCATGGCCCAAGGCTCAACTCACCTCTCGCA
*
18233538 ATATGAGTTGATTTTTTGAAAAACAGAATTTTAAAAG-AATAC
191 ATATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAGAAATAC
* *
18233580 CTCGGCATGCGACCCGAGGCTCAACTCACCCCACGCAGTATGAGTTGATTTTTGAAAAACAAG-A
1 CTCGGCATG-GACCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTGAAAAACAAGAA
* *
18233644 A-TT-GAAAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTAATTTTT
65 ATTTAAAAAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
* * * * *
18233707 GAAAAATATAAATTTAAAAGAAATACCTCAGCATGGTCCAAGGCTCAACTCACCTCTTGCAATAT
130 GAAAAACAGAAATTTAAAAGAAATACCTCGGCATGGCCCAAGGCTCAACTCACCTCTCGCAATAT
*
18233772 GAGTTGATTTTTGAAAAAACAGAAA-TTAAAAAAAATAC
195 GAGTTGATTTTTG-AAAAACAGAAATTTAAAAGAAATAC
* * * * *
18233810 CTCGGCAT-GACCCAAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAC-AGGAA
1 CTCGGCATGGACCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTGAAAAACAAGAAA
* * * *
18233873 TTTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTG
66 TTTAAAAAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTG
* * *
18233938 AAAAACAGAAATTTAAAAGAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
131 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGGCCCAAGGCTCAACTCACCTCTCGCAATATG
*
18234003 AGTTGATTTTTGAAAAACAAAAATTTAAAAGAAATAC
196 AGTTGATTTTTGAAAAACAGAAATTTAAAAGAAATAC
* * * * *
18234040 CTCAGCATGG-TCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAAC-AGAAA
1 CTCGGCATGGACCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTGAAAAACAAGAAA
* * *
18234103 TTTAAAAAAATACCTCGGCGTGACCC-ATGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTT
66 TTTAAAAAAATACCTCGGCGTGACCCGA-GGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
* * * * * * * *
18234167 GAAAAAACAGAAATTTAAAA-AAATACCTCAGCGTGACTCGAGGCTCAACTCACCTTTCGTATTA
130 G-AAAAACAGAAATTTAAAAGAAATACCTCGGCATGGCCCAAGGCTCAACTCACCTCTCGCAATA
*
18234231 TGAGTTGATTTTTGAAAAACATAAATTTAAAAGAAATAC
194 TGAGTTGATTTTTGAAAAACAGAAATTTAAAAGAAATAC
* * * *
18234270 CTCGGCGT-GACCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAAC-ATAAA
1 CTCGGCATGGACCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTGAAAAACAAGAAA
* * ** * * * * **
18234333 TTTAAAAGAAATACCTCAGCATGGTCCAAGGGTCAACTCACCTCTTGCAATATGAGTTCATCCTT
66 TTTAAAA-AAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
* * * * *
18234398 GAAAAAACAGAAA-TT-AAA-AATTACCTCGGCGTGACCCAAGGCTCAACTCACCTCTCGTATTA
130 G-AAAAACAGAAATTTAAAAGAAATACCTCGGCATGGCCCAAGGCTCAACTCACCTCTCGCAATA
*
18234460 TGAGTTGATTTTTGAAAAAACAGAAATTTAAAA-AAATGC
194 TGAGTTGATTTTTG-AAAAACAGAAATTTAAAAGAAATAC
* ** * *
18234499 CTCAGCAT-GACCCGAGGCTCAACTCACCTATCGTATTATGAGTTGATTTTTGAAAAAC-AGAAA
1 CTCGGCATGGACCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTGAAAAACAAGAAA
* * * * *
18234562 TTTAAAAGAAATACCTCGACGTGACCCGAGGCTCAACTCACCTCTTGTATTATGAGTTGATTTTT
66 TTTAAAA-AAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
* * * *
18234627 GAAAAAACAGAAATTAAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCACAAT
130 G-AAAAACAGAAATTTAAAAGAAATACCTCGGCATG-GCCCAAGGCTCAACTCACCTCTCGCAAT
* *
18234692 ATGAGTTGATTTTTTTTTG-AAAACAAAAATTTGAAAGAAATAC
193 ATGAGTTGA----TTTTTGAAAAACAGAAATTTAAAAGAAATAC
* *
18234735 CTTGGCATGG-TCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTGAAAAACAA-AAA
1 CTCGGCATGGACCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTGAAAAACAAGAAA
*
18234798 TTGAAAAA
66 TTTAAAAA
18234806 TATAATTCTT
Statistics
Matches: 1280, Mismatches: 139, Indels: 75
0.86 0.09 0.05
Matches are distributed among these distances:
227 2 0.00
228 47 0.04
229 209 0.16
230 572 0.45
231 86 0.07
232 41 0.03
233 147 0.11
234 70 0.05
235 35 0.03
236 63 0.05
237 8 0.01
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (232 bp):
CTCGGCATGGACCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTGAAAAACAAGAAA
TTTAAAAAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTG
AAAAACAGAAATTTAAAAGAAATACCTCGGCATGGCCCAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGAAAAACAGAAATTTAAAAGAAATAC
Found at i:18235683 original size:7 final size:7
Alignment explanation
Indices: 18235660--18235711 Score: 81
Period size: 7 Copynumber: 7.6 Consensus size: 7
18235650 TCATCTTGAT
18235660 TTTTCT-
1 TTTTCTA
18235666 TTTT-TA
1 TTTTCTA
18235672 CTTTTCTA
1 -TTTTCTA
18235680 TTTTCTA
1 TTTTCTA
18235687 TTTTCTA
1 TTTTCTA
18235694 TTTTCTA
1 TTTTCTA
18235701 TTTTCTA
1 TTTTCTA
18235708 TTTT
1 TTTT
18235712 TTTGTTTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
5 1 0.02
6 4 0.09
7 36 0.84
8 2 0.05
ACGTcount: A:0.12, C:0.13, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTTCTA
Found at i:18235731 original size:8 final size:8
Alignment explanation
Indices: 18235708--18235733 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
18235698 CTATTTTCTA
18235708 TTTTTTTG
1 TTTTTTTG
18235716 TTTTTTTG
1 TTTTTTTG
18235724 TTTTTTTG
1 TTTTTTTG
18235732 TT
1 TT
18235734 AGGCATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (8 bp):
TTTTTTTG
Found at i:18240484 original size:19 final size:20
Alignment explanation
Indices: 18240462--18240515 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
18240452 AACATGAAAA
18240462 TTTTGAAACACGAGA-TTT-T
1 TTTTGAAACACGA-ATTTTCT
18240481 TTTTGAAAACACGAATTTTCT
1 TTTTG-AAACACGAATTTTCT
*
18240502 TTTTGAAACGCGAA
1 TTTTGAAACACGAA
18240516 AATTTTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
19 6 0.19
20 19 0.61
21 6 0.19
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (20 bp):
TTTTGAAACACGAATTTTCT
Found at i:18240492 original size:20 final size:21
Alignment explanation
Indices: 18240462--18240548 Score: 66
Period size: 20 Copynumber: 4.5 Consensus size: 21
18240452 AACATGAAAA
18240462 TTTTG-AAACACGAGA-TTT-T
1 TTTTGAAAACACGA-ATTTTCT
18240481 TTTTGAAAACACGAATTTTCT
1 TTTTGAAAACACGAATTTTCT
* **
18240502 TTTTG-AAACGCGAA---AAT
1 TTTTGAAAACACGAATTTTCT
*
18240519 TTTT-AAAACACAAATTTT-T
1 TTTTGAAAACACGAATTTTCT
18240538 TTTTGAAAACA
1 TTTTGAAAACA
18240549 TAAAAATTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
17 12 0.22
19 11 0.20
20 25 0.46
21 6 0.11
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.40
Consensus pattern (21 bp):
TTTTGAAAACACGAATTTTCT
Found at i:18240555 original size:37 final size:38
Alignment explanation
Indices: 18240480--18240558 Score: 99
Period size: 37 Copynumber: 2.1 Consensus size: 38
18240470 CACGAGATTT
* * *
18240480 TTTTTGAAAACACGAATTTTCTTTTTGAAACGCGAAAA
1 TTTTTGAAAACACAAATTTTCTTTTTGAAACACAAAAA
*
18240518 TTTTT-AAAACACAAATTTT-TTTTTGAAAACATAAAAA
1 TTTTTGAAAACACAAATTTTCTTTTTG-AAACACAAAAA
18240555 TTTT
1 TTTT
18240559 GATAAAAAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
36 6 0.17
37 25 0.69
38 5 0.14
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.42
Consensus pattern (38 bp):
TTTTTGAAAACACAAATTTTCTTTTTGAAACACAAAAA
Found at i:18240609 original size:17 final size:16
Alignment explanation
Indices: 18240585--18240815 Score: 140
Period size: 17 Copynumber: 12.9 Consensus size: 16
18240575 CGAGGATTTT
18240585 TTTTTGAAACACGAAA
1 TTTTTGAAACACGAAA
*
18240601 TTTTATGAAACACGGTCAA
1 TTTT-TGAAACAC-G-AAA
18240620 TTTTTGAAAACACGAGAA
1 TTTTTG-AAACACGA-AA
*
18240638 TTTTTGAAAGACGAGAA
1 TTTTTGAAACACGA-AA
*
18240655 TTTTTTTAAAACACGGAAA
1 --TTTTTGAAACAC-GAAA
*
18240674 TTTATGAAACACGGAAA
1 TTTTTGAAACAC-GAAA
*
18240691 TCTTTTTTGAAAACAAGAAAA
1 ---TTTTTG-AAACACG-AAA
* *
18240712 TTTTTTAAATACGAGAA
1 TTTTTGAAACACGA-AA
18240729 TTTTTGAAAACACGGGAAA
1 TTTTTG-AAACAC--GAAA
18240748 -TTTTGAAAACACGAAAA
1 TTTTTG-AAACACG-AAA
18240765 TTTTTGAAACACGAGAAA
1 TTTTTGAAACAC--GAAA
*
18240783 TTTTTTGAAAACACAAAAA
1 -TTTTTG-AAACAC-GAAA
*
18240802 TTTTTGAATCACGA
1 TTTTTGAAACACGA
18240816 TTTTTTTAAG
Statistics
Matches: 175, Mismatches: 17, Indels: 46
0.74 0.07 0.19
Matches are distributed among these distances:
16 7 0.04
17 59 0.34
18 48 0.27
19 37 0.21
20 16 0.09
21 8 0.05
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.31
Consensus pattern (16 bp):
TTTTTGAAACACGAAA
Found at i:18240639 original size:18 final size:18
Alignment explanation
Indices: 18240585--18240809 Score: 173
Period size: 18 Copynumber: 12.4 Consensus size: 18
18240575 CGAGGATTTT
18240585 TTTTTG-AAACACGA-AA
1 TTTTTGAAAACACGAGAA
18240601 TTTTATG-AAACACG-GTCAA
1 TTTT-TGAAAACACGAG--AA
18240620 TTTTTGAAAACACGAGAA
1 TTTTTGAAAACACGAGAA
*
18240638 TTTTTG-AAAGACGAGAA
1 TTTTTGAAAACACGAGAA
*
18240655 TTTTTTTAAAACACG-GAAA
1 -TTTTTGAAAACACGAG-AA
*
18240674 TTTATG-AAACACG-GAAA
1 TTTTTGAAAACACGAG-AA
* *
18240691 TCTTTTTTGAAAACAAGAAAA
1 ---TTTTTGAAAACACGAGAA
* *
18240712 TTTTT-TAAATACGAGAA
1 TTTTTGAAAACACGAGAA
*
18240729 TTTTTGAAAACACGGGAA
1 TTTTTGAAAACACGAGAA
* *
18240747 ATTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAGAA
18240765 TTTTTG-AAACACGAGAAA
1 TTTTTGAAAACACGAG-AA
* *
18240783 TTTTTTGAAAACACAAAAA
1 -TTTTTGAAAACACGAGAA
18240802 TTTTTGAA
1 TTTTTGAA
18240810 TCACGATTTT
Statistics
Matches: 169, Mismatches: 22, Indels: 34
0.75 0.10 0.15
Matches are distributed among these distances:
16 4 0.02
17 51 0.30
18 64 0.38
19 29 0.17
20 13 0.08
21 8 0.05
ACGTcount: A:0.44, C:0.10, G:0.14, T:0.32
Consensus pattern (18 bp):
TTTTTGAAAACACGAGAA
Found at i:18240659 original size:74 final size:74
Alignment explanation
Indices: 18240569--18240806 Score: 206
Period size: 74 Copynumber: 3.2 Consensus size: 74
18240559 GATAAAAAGC
* *
18240569 GAAACACGAGGATTTTTTTTTGAAACAC-GAAATTTTATGAAACACGG-TCAATTTTTGAAAACA
1 GAAACACGAGAATTTTTTTTTAAAACACGGAAA-TTTATGAAACACGGATC-ATTTTTGAAAACA
* *
18240632 CGAGAATTTTT
64 AGAAAATTTTT
* *
18240643 GAAAGACGAGAA--TTTTTTTAAAACACGGAAATTTATGAAACACGGAAATCTTTTTTGAAAACA
1 GAAACACGAGAATTTTTTTTTAAAACACGGAAATTTATGAAACACGG--ATCATTTTTGAAAACA
18240706 AGAAAATTTTT
64 AGAAAATTTTT
* * * **
18240717 TAAATACGAGAA---TTTTTGAAAACACGGGAAATTT-TGAAAACAC-GAAAATTTTTGAAACAC
1 GAAACACGAGAATTTTTTTTTAAAACAC-GGAAATTTATG-AAACACGGATCATTTTTGAAA-AC
* *
18240777 GAGAAATTTTTT
63 AAGAAAATTTTT
* *
18240789 GAAAACACAAAAATTTTT
1 G-AAACACGAGAATTTTT
18240807 GAATCACGAT
Statistics
Matches: 135, Mismatches: 18, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
71 10 0.07
72 39 0.29
73 27 0.20
74 55 0.41
75 2 0.01
76 2 0.01
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.32
Consensus pattern (74 bp):
GAAACACGAGAATTTTTTTTTAAAACACGGAAATTTATGAAACACGGATCATTTTTGAAAACAAG
AAAATTTTT
Found at i:18240802 original size:37 final size:37
Alignment explanation
Indices: 18240585--18240815 Score: 157
Period size: 37 Copynumber: 6.4 Consensus size: 37
18240575 CGAGGATTTT
* **
18240585 TTTTTGAAACAC--GAAATTTTATG-AAACACGGTCAA
1 TTTTTGAAACACGAGAAATTTTTTGAAAACAC-GAAAA
**
18240620 TTTTTGAAAACACGAG-AA-TTTTTGAAAGACGA-GAATT
1 TTTTTG-AAACACGAGAAATTTTTTGAAA-AC-ACGAAAA
* * *
18240657 TTTTTAAAACACG-GAAA-TTTATG-AAACACGGAAATCT
1 TTTTTGAAACACGAGAAATTTTTTGAAAACAC-GAAA--A
* * *
18240694 TTTTTGAAA-ACAAGAAAATTTTTT--AAATACGAGAA
1 TTTTTGAAACACGAG-AAATTTTTTGAAAACACGAAAA
*
18240729 TTTTTGAAAACACGGGAAA--TTTTGAAAACACGAAAA
1 TTTTTG-AAACACGAGAAATTTTTTGAAAACACGAAAA
*
18240765 TTTTTGAAACACGAGAAATTTTTTGAAAACACAAAAA
1 TTTTTGAAACACGAGAAATTTTTTGAAAACACGAAAA
*
18240802 TTTTTGAATCACGA
1 TTTTTGAAACACGA
18240816 TTTTTTTAAG
Statistics
Matches: 155, Mismatches: 21, Indels: 38
0.72 0.10 0.18
Matches are distributed among these distances:
33 1 0.01
34 6 0.04
35 29 0.19
36 48 0.31
37 55 0.35
38 11 0.07
39 5 0.03
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.31
Consensus pattern (37 bp):
TTTTTGAAACACGAGAAATTTTTTGAAAACACGAAAA
Found at i:18240948 original size:15 final size:16
Alignment explanation
Indices: 18240932--18240963 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
18240922 TGATTCTATT
18240932 AAAACACGAGAATTTAA
1 AAAACACGAGAATTT-A
18240949 AAAACACGAGAATTT
1 AAAACACGAGAATTT
18240964 TAGAATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.19
Consensus pattern (16 bp):
AAAACACGAGAATTTA
Found at i:18241126 original size:22 final size:23
Alignment explanation
Indices: 18241101--18241151 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
18241091 TATTCGAATT
* *
18241101 TAAAAAATAAAATAAA-ATAAAA
1 TAAAAAAGAAAATAAATACAAAA
*
18241123 TAAAAAAGAACATAAATACAAAA
1 TAAAAAAGAAAATAAATACAAAA
18241146 TAAAAA
1 TAAAAA
18241152 TACTTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 14 0.56
23 11 0.44
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (23 bp):
TAAAAAAGAAAATAAATACAAAA
Found at i:18241191 original size:21 final size:21
Alignment explanation
Indices: 18241149--18241192 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
18241139 TACAAAATAA
* ** *
18241149 AAATACTTAAAAATGTGCAAC
1 AAATACTAAAAAAAATGAAAC
18241170 AAATACTAAAAAAAATGAAAC
1 AAATACTAAAAAAAATGAAAC
18241191 AA
1 AA
18241193 CATTTATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.64, C:0.11, G:0.07, T:0.18
Consensus pattern (21 bp):
AAATACTAAAAAAAATGAAAC
Found at i:18241628 original size:14 final size:14
Alignment explanation
Indices: 18241578--18241628 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
18241568 TTCTTTCCCC
* *
18241578 CTTTCTTCTTCCTT
1 CTTTTTTCTTCTTT
*
18241592 CTTCTTTCTT-TTT
1 CTTTTTTCTTCTTT
18241605 C-TTTTT-TTCTTT
1 CTTTTTTCTTCTTT
18241617 CTTTTTTCTTCT
1 CTTTTTTCTTCT
18241629 CCTTCGTTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 2 0.07
12 8 0.27
13 8 0.27
14 12 0.40
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (14 bp):
CTTTTTTCTTCTTT
Found at i:18242159 original size:30 final size:30
Alignment explanation
Indices: 18242125--18242274 Score: 162
Period size: 30 Copynumber: 5.0 Consensus size: 30
18242115 GGGCCGAAAC
*
18242125 GTAATTTTGAGAAAGTTTAAGGGTCCAAAT
1 GTAATTTTGAGAAAGTTTAGGGGTCCAAAT
** *
18242155 GTAATTTCAAGAAAGTTTATGGGT-CAAGAT
1 GTAATTTTGAGAAAGTTTAGGGGTCCAA-AT
* * **
18242185 GTAATTTAGA-AAACTTTAGGGGTTGAAAT
1 GTAATTTTGAGAAAGTTTAGGGGTCCAAAT
*
18242214 GTAATTTTGAGAAAGTTTAGGGGTCGAAAT
1 GTAATTTTGAGAAAGTTTAGGGGTCCAAAT
* *
18242244 GTAATTTT-AGAAAAGTTTAGAGGTCAAAAT
1 GTAATTTTGAG-AAAGTTTAGGGGTCCAAAT
18242274 G
1 G
18242275 AAAAAAATAA
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
29 27 0.26
30 76 0.74
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.33
Consensus pattern (30 bp):
GTAATTTTGAGAAAGTTTAGGGGTCCAAAT
Found at i:18242215 original size:29 final size:29
Alignment explanation
Indices: 18242105--18242274 Score: 155
Period size: 30 Copynumber: 5.7 Consensus size: 29
18242095 TAATGGCAAC
* * * * *
18242105 AAAACTTTTGGGGCCGAAACGTAATTTTG
1 AAAAGTTTAGGGGTCGAAATGTAATTTAG
* *
18242134 AGAAAGTTTAAGGGTCCAAATGTAATTTCA-
1 A-AAAGTTTAGGGGTCGAAATGTAATTT-AG
*
18242164 AGAAAGTTTATGGGTC-AAGATGTAATTTAG
1 A-AAAGTTTAGGGGTCGAA-ATGTAATTTAG
* * *
18242194 AAAACTTTAGGGGTTGAAATGTAATTTTG
1 AAAAGTTTAGGGGTCGAAATGTAATTTAG
18242223 AGAAAGTTTAGGGGTCGAAATGTAATTTTAG
1 A-AAAGTTTAGGGGTCGAAATGTAA-TTTAG
* *
18242254 AAAAGTTTAGAGGTCAAAATG
1 AAAAGTTTAGGGGTCGAAATG
18242275 AAAAAAATAA
Statistics
Matches: 117, Mismatches: 17, Indels: 13
0.80 0.12 0.09
Matches are distributed among these distances:
29 26 0.22
30 86 0.74
31 5 0.04
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (29 bp):
AAAAGTTTAGGGGTCGAAATGTAATTTAG
Found at i:18242218 original size:59 final size:60
Alignment explanation
Indices: 18242114--18242263 Score: 171
Period size: 59 Copynumber: 2.5 Consensus size: 60
18242104 CAAAACTTTT
* * * * **
18242114 GGGGCCGAAACGTAATTTT-GAGAAAGTTTAAGGGTCCAAATGTAATTTCAAGAAAGTTTA
1 GGGGTCGAAATGTAATTTTAGA-AAACTTTAGGGGTTGAAATGTAATTTCAAGAAAGTTTA
* **
18242174 TGGGTC-AAGATGTAA-TTTAGAAAACTTTAGGGGTTGAAATGTAATTTTGAGAAAGTTTA
1 GGGGTCGAA-ATGTAATTTTAGAAAACTTTAGGGGTTGAAATGTAATTTCAAGAAAGTTTA
*
18242233 GGGGTCGAAATGTAATTTTAGAAAAGTTTAG
1 GGGGTCGAAATGTAATTTTAGAAAACTTTAG
18242264 AGGTCAAAAT
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
59 48 0.64
60 27 0.36
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (60 bp):
GGGGTCGAAATGTAATTTTAGAAAACTTTAGGGGTTGAAATGTAATTTCAAGAAAGTTTA
Found at i:18242259 original size:89 final size:89
Alignment explanation
Indices: 18242105--18242270 Score: 237
Period size: 89 Copynumber: 1.9 Consensus size: 89
18242095 TAATGGCAAC
*
18242105 AAAACTTTTGGGGCCGAAACGTAATTTTGAGAAAGTTTAAGGGTCCAAATGTAATTTCAAGAAAG
1 AAAACTTTAGGGGCCGAAACGTAATTTTGAGAAAGTTTAAGGGTCCAAATGTAATTTCAAGAAAG
18242170 TTTATG-GGTCAAGATGTAATTTAG
66 TTTA-GAGGTCAAGATGTAATTTAG
** * * * *
18242194 AAAACTTTAGGGGTTGAAATGTAATTTTGAGAAAGTTTAGGGGTCGAAATGTAATTT-TAGAAAA
1 AAAACTTTAGGGGCCGAAACGTAATTTTGAGAAAGTTTAAGGGTCCAAATGTAATTTCAAG-AAA
18242258 GTTTAGAGGTCAA
65 GTTTAGAGGTCAA
18242271 AATGAAAAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
88 3 0.04
89 65 0.96
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (89 bp):
AAAACTTTAGGGGCCGAAACGTAATTTTGAGAAAGTTTAAGGGTCCAAATGTAATTTCAAGAAAG
TTTAGAGGTCAAGATGTAATTTAG
Found at i:18243227 original size:20 final size:20
Alignment explanation
Indices: 18243202--18243246 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
18243192 TAAATTCACA
18243202 TAATTAAAACT-AGACACAAT
1 TAATT-AAACTAAGACACAAT
**
18243222 TAATTAAGTTAAGACACAAT
1 TAATTAAACTAAGACACAAT
18243242 TAATT
1 TAATT
18243247 CGATTAGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.31
Consensus pattern (20 bp):
TAATTAAACTAAGACACAAT
Found at i:18243856 original size:4 final size:4
Alignment explanation
Indices: 18243847--18243873 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
18243837 AAGTTTTATT
18243847 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
18243874 TACTTAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:18245624 original size:16 final size:16
Alignment explanation
Indices: 18245603--18245635 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
18245593 TCCATTCACG
18245603 ATGTCTAGGTTCGGCC
1 ATGTCTAGGTTCGGCC
*
18245619 ATGTCTAGGTTTGGCC
1 ATGTCTAGGTTCGGCC
18245635 A
1 A
18245636 AAGTGTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.21, G:0.30, T:0.33
Consensus pattern (16 bp):
ATGTCTAGGTTCGGCC
Found at i:18252252 original size:46 final size:44
Alignment explanation
Indices: 18252182--18252273 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 44
18252172 GTTTTAAAGG
* *
18252182 ACCTCGACCCACTATCAACAATGATAGGAACCTTGGTATAAGATGA
1 ACCTCGACCAACAATCAACAATGATAGGAACCTTGGTAT--GATGA
**
18252228 ACCTCGACCAACAATCAAGGATGATAGGAACCTTGGTATGATGA
1 ACCTCGACCAACAATCAACAATGATAGGAACCTTGGTATGATGA
18252272 AC
1 AC
18252274 GCCACACTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 7 0.17
46 35 0.83
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.21
Consensus pattern (44 bp):
ACCTCGACCAACAATCAACAATGATAGGAACCTTGGTATGATGA
Found at i:18253637 original size:27 final size:28
Alignment explanation
Indices: 18253607--18253666 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
18253597 ACTTTGGACA
* * *
18253607 ACATTAA-AGCATGCAATAAAATTAGAC
1 ACATTAATAACATGCAATAAAATAAAAC
*
18253634 ACATTAATAACATGCATTAAAATAAAAC
1 ACATTAATAACATGCAATAAAATAAAAC
18253662 ACATT
1 ACATT
18253667 TATCACAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 7 0.25
28 21 0.75
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.25
Consensus pattern (28 bp):
ACATTAATAACATGCAATAAAATAAAAC
Found at i:18255694 original size:791 final size:790
Alignment explanation
Indices: 18254174--18255754 Score: 3029
Period size: 791 Copynumber: 2.0 Consensus size: 790
18254164 TGAGAGATTT
18254174 AAGAATTAGTGAGAATAAGAGAAAAGAAAAAGAAAAGTTATTAATGAAAGAAAAATAGAAGAGAT
1 AAGAATTAGTGAGAATAAGAGAAAAGAAAAAGAAAAGTTATTAATGAAAGAAAAATAGAAGAGAT
18254239 TGAGACAAAAAAAAGAAAAAGAAATAAAAAGAGAGTGAGTGAGAAAAGAAGTTGTGGAAAAAAAA
66 TGAGACAAAAAAAAGAAAAAGAAATAAAAAGAGAGTGAGTGAGAAAAGAAGTTGTGGAAAAAAAA
18254304 GAATGAAAAAGAATTTGAGCAAGAAAAGAAAATTGAAAAAGAATGCGAGAAAGAAGAATAAGAAA
131 GAATGAAAAAGAATTTGAGCAAGAAAAGAAAATTGAAAAAGAATGCGAGAAAGAAGAATAAGAAA
*
18254369 TTGAGATTGAAGAAATAAAAGCAAGTGTGAGTAATATGAATGACGTTGTTGAAACAAAAAGTGAA
196 TTGAGATTGAAGAAATAAAAACAAGTGTGAGTAATATGAATGACGTTGTTGAAACAAAAAGTGAA
*
18254434 ATTGAAAAGGAGTGTGACAAGGAAATGAGTGTTTTTACTAACCAATATGCAAGTTGTCCTCATTT
261 ATTGAAAAGGAGTGTGACAAGGAAATGAGTGTTTTTACTAACCAACATGCAAGTTGTCCTCATTT
18254499 TGTCTCTTCATTTCAAGTTTCTAATGGTTCATTTGATGAGTTCCAACTTCTTTACTCCACTTTCG
326 TGTCTCTTCATTTCAAGTTTCTAATGGTTCATTTGATGAGTTCCAACTTCTTTACTCCACTTTCG
18254564 AGAGACGGTTCTCTTTAATCAAAAAATGTAAAATAAAAAATGACATTAATCCACAATTTCTTAAA
391 AGAGACGGTTCTCTTTAATCAAAAAATGTAAAATAAAAAATGACATTAATCCACAATTTCTTAAA
18254629 GGTAAGGTAGGTAAGTAATCTTTAGCAATTGAATCAAGACAATCTATTTTAAATATTGTTGATAA
456 GGTAAGGTAGGTAAGTAATCTTTAGCAATTGAATCAAGACAATCTATTTTAAATATTGTTGATAA
18254694 AAATGTCGATGACTTAGTTTTCAAAAGATCTCTTCACAATGTACCAGTTAATTGTCACTCTTTGG
521 AAATGTCGATGACTTAGTTTTCAAAAGATCTCTTCACAATGTACCAGTTAATTGTCACTCTTTGG
18254759 TTGTCATTGATGATTTTGTTTCAGAGAGTGTCAATGTAACCTCCCAAACCCAACCTAGACGTTAT
586 TTGTCATTGATGATTTTGTTTCAGAGAGTGTCAATGTAACCTCCCAAACCCAACCTAGACGTTAT
*
18254824 GGTCGAATCAGGAAGGCCACATTAGCCACCTTAGTGTCGGACCTACCCAACGATAGTTAAAAACC
651 GGTCGAATCAGGAAGGCCACATTAGACACCTTAGTGTCGGACCTACCCAACGATAGTTAAAAACC
18254889 TTCAAGTACTCCTTTTTATAAAATTGTGGTTTCTATTGCTAGCTTTGGAAAACATCCATTTACTT
716 TTCAAGTACTCCTTTTTATAAAATTGTGGTTTCTATTGCTAGCTTTGGAAAACATCCATTTACTT
18254954 AGTCCAACCA
781 AGTCCAACCA
*
18254964 AAGAATTAGTGAGAATAAGAGAAAAGAAAAAGAAAAGTTATTGATGAAAGAAAAATAGAAGAGAT
1 AAGAATTAGTGAGAATAAGAGAAAAGAAAAAGAAAAGTTATTAATGAAAGAAAAATAGAAGAGAT
18255029 TGAGACAAAAAAAAAGAAAAAGAAATAAAAAGAGAGTGAGTGAGAAAAGAAGTTGTGGAAAAAAA
66 TGAGAC-AAAAAAAAGAAAAAGAAATAAAAAGAGAGTGAGTGAGAAAAGAAGTTGTGGAAAAAAA
18255094 AGAATGAAAAAGAATTTGAGCAAGAAAAGAAAATTGAAAAAGAATGCGAGAAAGAAGAATAAGAA
130 AGAATGAAAAAGAATTTGAGCAAGAAAAGAAAATTGAAAAAGAATGCGAGAAAGAAGAATAAGAA
18255159 ATTGAGATTGAAGAAATAAAAACAAGTGTGAGTAATATGAATGACGTTGTTGAAACAAAAAGTGA
195 ATTGAGATTGAAGAAATAAAAACAAGTGTGAGTAATATGAATGACGTTGTTGAAACAAAAAGTGA
18255224 AATTGAAAAGGAGTGTGACAAGGAAATGAGTGTTTTTACTAACCAACATGCAAGTTGTCCTCATT
260 AATTGAAAAGGAGTGTGACAAGGAAATGAGTGTTTTTACTAACCAACATGCAAGTTGTCCTCATT
*
18255289 TTGTCTCTTCATTTCAGGTTTCTAATGGTTCATTTGATGAGTTCCAACTTCTTTACTCCACTTTC
325 TTGTCTCTTCATTTCAAGTTTCTAATGGTTCATTTGATGAGTTCCAACTTCTTTACTCCACTTTC
* *
18255354 GAGAGACGGTTCTCTTTAATCAAAAAATGTTAGAT-AAAAATGACATTAATCCACAATTTCTTAA
390 GAGAGACGGTTCTCTTTAATCAAAAAATGTAAAATAAAAAATGACATTAATCCACAATTTCTTAA
*
18255418 AGGTAAGGTAGGTAAGTAATCTTTAGCAATTGAATCAAGACAATCTATTTTGAATATTGTTGATA
455 AGGTAAGGTAGGTAAGTAATCTTTAGCAATTGAATCAAGACAATCTATTTTAAATATTGTTGATA
*
18255483 AAAATGTCGATGACTTAGTTTTCAAAAGATCTCTTCACAATGTACTAGTTAATTGTCACTCTTTG
520 AAAATGTCGATGACTTAGTTTTCAAAAGATCTCTTCACAATGTACCAGTTAATTGTCACTCTTTG
18255548 GTTGTCATTGATGATTTTGTTTCAGAGAGTGTCAATGTAACCTCCCAAACCCAACCTAGACGTTA
585 GTTGTCATTGATGATTTTGTTTCAGAGAGTGTCAATGTAACCTCCCAAACCCAACCTAGACGTTA
* *
18255613 TGGTCGAATCAGGAAGGCCACATTGGACACCTTAGTGTCGGACCTACCATAACGATAGTTAAAAA
650 TGGTCGAATCAGGAAGGCCACATTAGACACCTTAGTGTCGGACCTACC-CAACGATAGTTAAAAA
18255678 CCTTCAAGTACTCCTTTTTATAAAATTGTGGTTTCTATTGCTAGCTTTGGAAAACATCCATTTAC
714 CCTTCAAGTACTCCTTTTTATAAAATTGTGGTTTCTATTGCTAGCTTTGGAAAACATCCATTTAC
*
18255743 TTTGTCCAACCA
779 TTAGTCCAACCA
18255755 TGCTCAGGTC
Statistics
Matches: 777, Mismatches: 12, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
790 338 0.44
791 439 0.56
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (790 bp):
AAGAATTAGTGAGAATAAGAGAAAAGAAAAAGAAAAGTTATTAATGAAAGAAAAATAGAAGAGAT
TGAGACAAAAAAAAGAAAAAGAAATAAAAAGAGAGTGAGTGAGAAAAGAAGTTGTGGAAAAAAAA
GAATGAAAAAGAATTTGAGCAAGAAAAGAAAATTGAAAAAGAATGCGAGAAAGAAGAATAAGAAA
TTGAGATTGAAGAAATAAAAACAAGTGTGAGTAATATGAATGACGTTGTTGAAACAAAAAGTGAA
ATTGAAAAGGAGTGTGACAAGGAAATGAGTGTTTTTACTAACCAACATGCAAGTTGTCCTCATTT
TGTCTCTTCATTTCAAGTTTCTAATGGTTCATTTGATGAGTTCCAACTTCTTTACTCCACTTTCG
AGAGACGGTTCTCTTTAATCAAAAAATGTAAAATAAAAAATGACATTAATCCACAATTTCTTAAA
GGTAAGGTAGGTAAGTAATCTTTAGCAATTGAATCAAGACAATCTATTTTAAATATTGTTGATAA
AAATGTCGATGACTTAGTTTTCAAAAGATCTCTTCACAATGTACCAGTTAATTGTCACTCTTTGG
TTGTCATTGATGATTTTGTTTCAGAGAGTGTCAATGTAACCTCCCAAACCCAACCTAGACGTTAT
GGTCGAATCAGGAAGGCCACATTAGACACCTTAGTGTCGGACCTACCCAACGATAGTTAAAAACC
TTCAAGTACTCCTTTTTATAAAATTGTGGTTTCTATTGCTAGCTTTGGAAAACATCCATTTACTT
AGTCCAACCA
Found at i:18258933 original size:52 final size:50
Alignment explanation
Indices: 18258869--18258982 Score: 131
Period size: 50 Copynumber: 2.2 Consensus size: 50
18258859 ATGAACAAAT
* *
18258869 GAGTTACTTAATGCAAGAC-TTAATTTAATGTTGCAGACTTAAACTAACATGG
1 GAGTTACATAATGCAAGACATT-ATTT-ATGATGCAGACTT-AACTAACATGG
* * * *
18258921 GAGTTACATAATGCATGTCATTATTTATGATGCATACTTAACTAGCATGG
1 GAGTTACATAATGCAAGACATTATTTATGATGCAGACTTAACTAACATGG
*
18258971 AAGTTACATAAT
1 GAGTTACATAAT
18258983 ACTTTATTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
50 21 0.39
51 11 0.20
52 20 0.37
53 2 0.04
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (50 bp):
GAGTTACATAATGCAAGACATTATTTATGATGCAGACTTAACTAACATGG
Found at i:18268741 original size:22 final size:21
Alignment explanation
Indices: 18268709--18268766 Score: 89
Period size: 22 Copynumber: 2.7 Consensus size: 21
18268699 TTGGTATTTA
18268709 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
18268730 GGAAGTTGGTACGAAATGGTAT
1 GGAA-TTGGTACGAAATGGTAT
*
18268752 GGTATTTGGTACGAA
1 GG-AATTGGTACGAA
18268767 TTAGTAATGG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 4 0.12
22 29 0.85
23 1 0.03
ACGTcount: A:0.31, C:0.05, G:0.34, T:0.29
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:18276799 original size:22 final size:22
Alignment explanation
Indices: 18276768--18276832 Score: 94
Period size: 22 Copynumber: 2.9 Consensus size: 22
18276758 ACCTTTTTGA
*
18276768 ACCATTACCAATTCGTACCAAAT
1 ACCA-TACCATTTCGTACCAAAT
*
18276791 ACCATACCATTTCGTACCAACT
1 ACCATACCATTTCGTACCAAAT
*
18276813 TCCATACCATTTCGTACCAA
1 ACCATACCATTTCGTACCAA
18276833 TTCCTAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 35 0.90
23 4 0.10
ACGTcount: A:0.34, C:0.34, G:0.05, T:0.28
Consensus pattern (22 bp):
ACCATACCATTTCGTACCAAAT
Found at i:18283014 original size:11 final size:10
Alignment explanation
Indices: 18282989--18283049 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
18282979 ACCAATAAAA
18282989 TAAA-TGAGC
1 TAAATTGAGC
*
18282998 TGAATTGTAGC
1 TAAATTG-AGC
18283009 TAAATTGAGC
1 TAAATTGAGC
**
18283019 TCGATTGAGC
1 TAAATTGAGC
18283029 TGAAA-TGAGC
1 T-AAATTGAGC
*
18283039 TCAATTGAGC
1 TAAATTGAGC
18283049 T
1 T
18283050 GGTCGGAGCT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:18283050 original size:20 final size:20
Alignment explanation
Indices: 18282990--18283050 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
18282980 CCAATAAAAT
*
18282990 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
18283010 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
18283031 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
18283051 GTCGGAGCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:18283059 original size:30 final size:30
Alignment explanation
Indices: 18282994--18283070 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
18282984 TAAAATAAAT
* *
18282994 GAGCTGAATTGTAGCTAAATTGAGCTCGATT
1 GAGCTGAAATG-AGCTAAATTGAGCTCGATG
* *
18283025 GAGCTGAAATGAGCTCAATTGAGCT-GGTCG
1 GAGCTGAAATGAGCTAAATTGAGCTCGAT-G
*
18283055 GAGCTGAAACGAGCTA
1 GAGCTGAAATGAGCTA
18283071 GAAAAGCTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
29 2 0.05
30 27 0.69
31 10 0.26
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (30 bp):
GAGCTGAAATGAGCTAAATTGAGCTCGATG
Found at i:18283391 original size:25 final size:28
Alignment explanation
Indices: 18283362--18283447 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 28
18283352 GGTCAAACAA
18283362 TAATTAG-ATA-T-TATTAAATATGTCC
1 TAATTAGTATAGTGTATTAAATATGTCC
* *
18283387 TAATTAGTTTAGGTGTTTTAAATATGTCC
1 TAATTAGTATA-GTGTATTAAATATGTCC
*
18283416 TAATTAGT-TCAAGTGTTTTAAATATGTCC
1 TAATTAGTAT--AGTGTATTAAATATGTCC
18283445 TAA
1 TAA
18283448 ACTAATACAT
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
25 7 0.13
26 2 0.04
28 2 0.04
29 41 0.77
30 1 0.02
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (28 bp):
TAATTAGTATAGTGTATTAAATATGTCC
Found at i:18283417 original size:29 final size:29
Alignment explanation
Indices: 18283375--18283447 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
18283365 TTAGATATTA
* *
18283375 TTAAATATGTCCTAATTAGTTTAGGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
18283404 TTAAATATGTCCTAATTAGTTCAAGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
18283433 TTAAATATGTCCTAA
1 TTAAATATGTCCTAA
18283448 ACTAATACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.45
Consensus pattern (29 bp):
TTAAATATGTCCTAATTAGTTCAAGTGTT
Found at i:18284702 original size:18 final size:19
Alignment explanation
Indices: 18284679--18284725 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
18284669 AGACCGTATA
*
18284679 CAATTTTTTT-CTTTTTTT
1 CAATTTTTTTGATTTTTTT
18284697 CAATTTTTTTGATTTTTTT
1 CAATTTTTTTGATTTTTTT
*
18284716 CGATTTTTTT
1 CAATTTTTTT
18284726 TTCAAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.13, C:0.09, G:0.04, T:0.74
Consensus pattern (19 bp):
CAATTTTTTTGATTTTTTT
Found at i:18284703 original size:10 final size:10
Alignment explanation
Indices: 18284679--18284725 Score: 55
Period size: 10 Copynumber: 5.0 Consensus size: 10
18284669 AGACCGTATA
18284679 CAATTTTTTT
1 CAATTTTTTT
18284689 C--TTTTTTT
1 CAATTTTTTT
18284697 CAATTTTTTT
1 CAATTTTTTT
*
18284707 -GATTTTTTT
1 CAATTTTTTT
*
18284716 CGATTTTTTT
1 CAATTTTTTT
18284726 TTCAAATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
8 8 0.24
9 8 0.24
10 17 0.52
ACGTcount: A:0.13, C:0.09, G:0.04, T:0.74
Consensus pattern (10 bp):
CAATTTTTTT
Found at i:18288726 original size:45 final size:45
Alignment explanation
Indices: 18288675--18288906 Score: 365
Period size: 45 Copynumber: 5.2 Consensus size: 45
18288665 CATGAAATTA
*
18288675 AGGAAGCATTTGACCAACATCATGCATAATTCATGGGAGAATTTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
* *
18288720 AGGAAGCATTTGCCCAACATCATGCATAATTCATTGAAGAATTTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
*
18288765 AGGAAGCATCTGACCAACATCATGCATAATTCATGGAAGAATTTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
* *
18288810 AGGAAGCATTTGACCAACTTCATGCATAATTCATGGAAGAATTTA
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
* * * * *
18288855 AGGAAGCATTTGGCCAACTTCATGCATAATTTATGGAACAAATTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
18288900 AGGAAGC
1 AGGAAGC
18288907 GCACAGCAAA
Statistics
Matches: 173, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 173 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (45 bp):
AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
Found at i:18295162 original size:45 final size:45
Alignment explanation
Indices: 18295098--18295333 Score: 391
Period size: 45 Copynumber: 5.2 Consensus size: 45
18295088 CGGCATGAAA
*
18295098 TTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGGAGAAT
1 TTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAAT
18295143 TTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAAT
1 TTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAAT
*
18295188 TTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAAT
1 TTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAAT
*
18295233 TTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAAT
1 TTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAAT
* * * * *
18295278 TTAAGGAAGAATTTGGCCAACATCATGCATAATTTATGGAACAAA
1 TTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAAT
*
18295323 TTGAGGAAGCA
1 TTAAGGAAGCA
18295334 CCATGGCCGA
Statistics
Matches: 181, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 181 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (45 bp):
TTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAAT
Found at i:18298339 original size:52 final size:51
Alignment explanation
Indices: 18298233--18298404 Score: 192
Period size: 50 Copynumber: 3.4 Consensus size: 51
18298223 ATGATGCTTA
* * * *
18298233 AATGCATGATTTAA-TTAA-GATGCAAAC-TAAATGAACA-AATGAGTTACTT
1 AATGCATGACTTAATTTAATGATGCAAACTTAACT-AACATGA-GAGTTACAT
* *
18298282 AATGCATGACTTAATTTAATGATGCAGACTTAAACTAACATGGGAGTTACAT
1 AATGCATGACTTAATTTAATGATGCAAACTT-AACTAACATGAGAGTTACAT
* *
18298334 AATGCATGTCATAATTT-ATGATGCAAACTTAACTAACATGAGAGTTACAT
1 AATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGAGAGTTACAT
* *
18298384 AATGCATGACTTTATTAAATG
1 AATGCATGACTTAATTTAATG
18298405 CTGAACACAT
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
49 13 0.13
50 36 0.35
51 23 0.22
52 28 0.27
53 3 0.03
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (51 bp):
AATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGAGAGTTACAT
Found at i:18300215 original size:20 final size:20
Alignment explanation
Indices: 18300192--18300238 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
18300182 GGGTTGAGGT
18300192 TGAGCTGAATTCAACTCGAA
1 TGAGCTGAATTCAACTCGAA
* * * *
18300212 TGAGCTGACTTGAGCTCGAG
1 TGAGCTGAATTCAACTCGAA
18300232 TGAGCTG
1 TGAGCTG
18300239 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (20 bp):
TGAGCTGAATTCAACTCGAA
Found at i:18311638 original size:43 final size:43
Alignment explanation
Indices: 18311502--18311726 Score: 109
Period size: 44 Copynumber: 5.1 Consensus size: 43
18311492 CAACCGAGAG
**
18311502 AGGCAAGGTTTGTGTCTTCAACCTGCTTCGCTGTCAATGCAGGA
1 AGGCAAGG-TTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGA
* * ** ** ** ** * *
18311546 AAGCAAGATCTGTTGTCTTCAACAAGC-TCAATCACAA-CCAAGA
1 AGGCAAGGT-TG-TGTCTTTGACCTGCTTCGCTGTCAATGCAGGA
*
18311589 GAGGCAAGGTTGTGTCTTTGACCTGCTTCGCTGTCAGTGCAGGA
1 -AGGCAAGGTTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGA
* ** ** ** ** *
18311633 AGGCAAGATCTGTTGTCTTCAACAAGC-TCAATCACAA--CCGAGA
1 AGGCAAGGT-TG-TGTCTTTGACCTGCTTCGCTGTCAATGCAG-GA
18311676 GAGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGG-TTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGA
18311721 AGGCAA
1 AGGCAA
18311727 AATCTGTTGT
Statistics
Matches: 124, Mismatches: 44, Indels: 26
0.64 0.23 0.13
Matches are distributed among these distances:
42 12 0.10
43 32 0.26
44 53 0.43
45 25 0.20
46 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (43 bp):
AGGCAAGGTTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGA
Found at i:18311738 original size:88 final size:88
Alignment explanation
Indices: 18311224--18315047 Score: 3921
Period size: 88 Copynumber: 43.4 Consensus size: 88
18311214 NNNNAGAGAG
* * * * *
18311224 GGCAAGGTTTGGTGTTTTTGGCCTGGTTCGCTGTCCAATGCAGGAAGGCCAAAATCTGTTGTCTT
1 GGCAAGGTTT-GTGTCTTCGACCTGCTTCGCTGT-CAATGCAGGAAGG-CAAGATCTGTTGTC-T
*
18311289 TAAACCCAGCTCCATCACAACCGAGGGAA
62 TCAA-CCAGCTCCATCACAACCGAGGG-A
* * * * *
18311318 GGCAGGGGTTT-TGTCTTCGATCTGATTCGCTGTCAATGCAAGGAAGGCAAGATCTTTTGTTTTC
1 GGCA-AGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGC-AGGAAGGCAAGATCTGTTGTCTTC
18311382 AACCAGCTTCCATCACCAACCG-GGGA
64 AACCAGC-TCCATCA-CAACCGAGGGA
* * * *
18311408 GAAGGATAGGGTTTGGGTCTTTCGACCTGCTTCGCTGTCAATACAGGAAAGGCAGGATCTGTTGT
1 G--GCA-A-GGTTTGTGTC-TTCGACCTGCTTCGCTGTCAATGCAGG-AAGGCAAGATCTGTTGT
* *
18311473 CTTCAACCCAGCTTCATCACAACCGAGAGA
60 CTTCAA-CCAGCTCCATCACAACCGAGGGA
* *
18311503 GGCAAGGTTTGTGTCTTCAACCTGCTTCGCTGTCAATGCAGGAAAGCAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
* * * *
18311568 CAAGCTCAATCACAACCAAGAGA
66 CCAGCTCCATCACAACCGAGGGA
* *
18311591 GGCAAGG-TTGTGTCTTTGACCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
* * *
18311655 CAAGCTCAATCACAACCGAGAGA
66 CCAGCTCCATCACAACCGAGGGA
* *
18311678 GGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAAATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
18311743 CCAGCTCCATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * * * * *
18311766 GGCAGGGCTTT-TGTCTTC-ATTCTGATTCGCTGTCAATGCAGGAAGGTAAGATTTTTTGTCTTC
1 GGCAAGG-TTTGTGTCTTCGA-CCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
*
18311829 AACCAGCTCCATCACAACGGAGGGA
64 AACCAGCTCCATCACAACCGAGGGA
* * * *
18311854 GGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCGGGAAGGCAAGATCTTTTGTTTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
* *
18311919 TCAGCTCCATCAC-ACCGAGAGA
66 CCAGCTCCATCACAACCGAGGGA
* *
18311941 GGCAATGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
* * *
18312006 CCAGCTCCATCCCAATCGAGAGA
66 CCAGCTCCATCACAACCGAGGGA
* *
18312029 GGCAAGGTTTGTGTATTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
18312094 CCAGCTCCATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * *
18312117 GGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
*
18312182 CCAGCTCCATCACAACCGAGAGA
66 CCAGCTCCATCACAACCGAGGGA
** * * * * *
18312205 GATAACGTTTGTGCCTTCGACTTGCTTCGCTGTCAATACAGGAAGGCAAGATCTGTTGTCGTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
*
18312270 CCAGCTCTATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * ** * *
18312293 GGCAAAGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAACGCTTGATTTTTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
*
18312358 CCAGCTCCATCACAACCGAGAGA
66 CCAGCTCCATCACAACCGAGGGA
* * *************************************
18312381 GG-ATAGGTTTGTGTATTCGACCTGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 GGCA-AGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
************************
18312445 NNNNNNNNNNNNNNNNNNNNNNNN
65 ACCAGCTCCATCACAACCGAGGGA
*****************************************************************
18312469 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
***************** *
18312534 NNNNNNNNNNNNNNNNNGAGAGA
66 CCAGCTCCATCACAACCGAGGGA
* *
18312557 GGCAAGGTTTGTGTCTTTGACGTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
18312622 CCAGCTCCATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * * * * * * * * *
18312645 GGCAGGGCTTGTGTCTTCGATCTGATTCGTTGTCAATGTA-AAGAGGTAAGATTTTTTGTCTTCA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGA-AGGCAAGATCTGTTGTCTTCA
18312709 ACCAGCTCCATCACAACCGAGGGA
65 ACCAGCTCCATCACAACCGAGGGA
* * *
18312733 CGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCATGATCTTTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
18312798 CCAGCTCCATCACAACCG-GGAGA
66 CCAGCTCCATCACAACCGAGG-GA
18312821 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
* * **
18312886 CAAGCTCAATCACAACCGAGAAA
66 CCAGCTCCATCACAACCGAGGGA
* *
18312909 GGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
*
18312974 CCAGCTCCATCACATCCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * * * ** *
18312997 GGCAGGGCTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAAGATAAGAT-TTTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
* **
18313061 CCAGCTCCATAACAACCGAGGTT
66 CCAGCTCCATCACAACCGAGGGA
* * * * *
18313084 GGCAAGGTTTGTGTCTTCGACCTGCTTCACCGTCAATACAAGAAGGCAAGATCTACTT-TCTTCA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT-GTTGTCTTCA
* *
18313148 ACCAGCTCCATCACAACCAAGAGA
65 ACCAGCTCCATCACAACCGAGGGA
* * * *
18313172 GGCAAGCTTTGTGTCTTCGACCTGCTTCACTGTCTATGCAGGAAGGCAAGATCTGTTGTCCTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
* *
18313237 CCACCTCTATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * * *
18313260 GGCAATGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCATGATCTTTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
18313325 CCAGCTCCATCACAACCG-GGAGA
66 CCAGCTCCATCACAACCGAGG-GA
* * *
18313348 GGCAAGGTTTGTGTCTTTGACCCGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
** * *
18313413 CCAAATCCATCATAACTGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * * * * *
18313436 GGCAAGGTCAT-TGTCTTTGACATGCTTCCCTGACAATGAAGGAAGGCAAGATCTGTTGTCTTCA
1 GGCAAGGT-TTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
*
18313500 ACCAGCTCCATC-CTAATCGAGGGA
65 ACCAGCTCCATCAC-AACCGAGGGA
* * * *
18313524 GGCAAGGTTTGTGTCTTTGACCTGCTTCGGTGACAATACAGGAAGGCAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
* * *
18313589 CCAGATCCATCAAAACCCAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * * *
18313612 GGCAAGGTTTGTGTCTTCGATCTGATTCGCTGCCAATGCAGGAAGGGAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
*
18313677 CCAGTTCCATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* ** * *
18313700 GGCAAGGTTTTTGTCTTCGAAATACTTCGCTGTCAATGCAGGAAGGTAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
18313765 CCAGCTCCATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* ** * * *
18313788 GGCAAGGTTTGTGTCTTTGATTTGATTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
*
18313853 CCAGCTCCATCACAATCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * *
18313876 GGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGAAGGAAGGCAAGAT-TGGTTGTCTTCA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT-GTTGTCTTCA
* * *
18313940 ACCAGCTCCACCACAACTGAGAGA
65 ACCAGCTCCATCACAACCGAGGGA
* * *
18313964 GGCAAGATTTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGAAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
18314029 CCAGCTCCATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * * *
18314052 GGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAA-GCAAGATCTTTTATCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
18314116 CCAGCTCCATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * ** * ** * * *
18314139 GGCTAGGTGTGGTGTCTTCGATTTGATTCGCTGTCAATGTTGGACGGCAAGGTCTTTTGTCTTCA
1 GGCAAGGT-TTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
18314204 ACCAGCTCCATCACAACCGAGGGA
65 ACCAGCTCCATCACAACCGAGGGA
* * *
18314228 GGCAAGGTTTGTGTCTTCGATCTGCTTCACTGTCAATGCAGGATGGCAAGATC-GTTTGTCTTCA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTG-TTGTCTTCA
* *
18314292 ACCAGCTCCATAACAACCGAGAGA
65 ACCAGCTCCATCACAACCGAGGGA
* *
18314316 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGACAATGCAGGAAGGCAAGATCTTTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
*
18314381 CCAGCTCTATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* *
18314404 GGCAAGGTTTGTGTCTTTGACCTACTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
18314469 CCAGCTCCATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
*
18314492 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
* *
18314557 TCAGCTCCATCACAACCGAGAGA
66 CCAGCTCCATCACAACCGAGGGA
* *
18314580 GGCTAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAT
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
* * *
18314645 CCAGCTCAATCACAACCTAGAGA
66 CCAGCTCCATCACAACCGAGGGA
* *
18314668 GG-ATAGGTTTGTGTATTCGACCTGCCTCGCTGTCAATGCAAGGAAGGCAAGATCTGTTGTCTTC
1 GGCA-AGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGC-AGGAAGGCAAGATCTGTTGTCTTC
*
18314732 AACCAGCTCCATCACAA-C-AGAGA
64 AACCAGCTCCATCACAACCGAGGGA
* *
18314755 -G-AAGGTTTGTGTCTTCAACCTGCTTCGCTGTCAATGAAGGAAGGCAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
* * *
18314818 CAAGCTCAATCACAACCGAGAGA
66 CCAGCTCCATCACAACCGAGGGA
* * *
18314841 GGCAAGGTTTGTGTCTTTGACCTGATTCGCTATCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
*
18314906 CCAGCTCAATCACAACCGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
* * * * * * * * *
18314929 GGCAGGGCTTGTGTCTTCGATCTGATTCGCTGTAAATGCAGGAAGGTAAGATTTTTTGTCTTCGA
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
*
18314994 CCAGCTCCATCACAACTGAGGGA
66 CCAGCTCCATCACAACCGAGGGA
*
18315017 GGCAAGGTTTGTGTCTTCGATCTGCTTCGCT
1 GGCAAGGTTTGTGTCTTCGACCTGCTTCGCT
18315048 NNNNNNNNNN
Statistics
Matches: 3147, Mismatches: 538, Indels: 96
0.83 0.14 0.03
Matches are distributed among these distances:
84 39 0.01
85 32 0.01
86 7 0.00
87 298 0.09
88 2462 0.78
89 120 0.04
90 32 0.01
91 23 0.01
92 26 0.01
93 31 0.01
94 16 0.01
95 56 0.02
96 5 0.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.26
Consensus pattern (88 bp):
GGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA
CCAGCTCCATCACAACCGAGGGA
Found at i:18313628 original size:43 final size:44
Alignment explanation
Indices: 18313298--18314932 Score: 204
Period size: 44 Copynumber: 37.2 Consensus size: 44
18313288 GCTGTCAATG
* * *
18313298 CAGGAAGGCATGATCTTTTGTCTTCAACCAGCTCCATCACAA-C
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * ** * * ** **
18313341 CGGGAGAGGCAAGGTTTG-TGTCTTTGACCCGCTTCGC-TGTCAATG
1 CAGGA-AGGCAAGATCTGTTGTCTTCAACCAG-ATC-CATCACAACC
* * * *
18313386 CAGGAAGGCAAGATCTATTGTCTTCAACCAAATCCATCATAACT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * ** * * * **
18313430 GAGGGAGGCAAGGTC-ATTGTCTTTGA-CATGCTTCCCTGACAATG
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCA-G-ATCCATCACAACC
* * *
18313474 AAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATC-CTAATC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCAC-AACC
* * * * ** * * ** * **
18313518 GAGGGAGGCAAGGTTTG-TGTCTTTGACCTGCTTCGGTGACAATA
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAG-ATCCATCACAACC
*
18313562 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCAAAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * * * **
18313606 CAGGGAGGCAAGGTTTG-TGTCTTCGATCTGATTCGC-TGC-CAATG
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGA-TC-CAT-CACAACC
* *
18313650 CAGGAAGGGAAGATCTGTTGTCTTCAACCAGTTCCATCACAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * ** ** ** **
18313694 GAGGGAGGCAAGGT-TTTTGTCTTCGAAATACTTCGC-TGTCAATG
1 CAGGAAGGCAAGATCTGTTGTCTTC-AACCAGATC-CATCACAACC
* *
18313738 CAGGAAGGTAAGATCTGTTGTCTTCAACCAGCTCCATCACAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * ** *** ** **
18313782 GAGGGAGGCAAGGTTTG-TGTCTTTGATTTGATTCGC-TGTCAATG
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGA-TC-CATCACAACC
* * * *
18313826 CAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCATCACAATC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * * * * ** **
18313870 GAGGGAGGCAAGGTTTG-TGTCTTCGATCTGATTCGC-TGTCAATG
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGA-TC-CATCACAACC
* * * *
18313914 AAGGAAGGCAAGAT-TGGTTGTCTTCAACCAGCTCCACCACAACT
1 CAGGAAGGCAAGATCT-GTTGTCTTCAACCAGATCCATCACAACC
* * ** * * ** **
18313958 GA-GAGAGGCAAGATTTG-TGTCTTTGACCTGCTTCGC-TGTCAATG
1 CAGGA-AGGCAAGATCTGTTGTCTTCAACCAG-ATC-CATCACAACC
* *
18314002 CAGGAAGGAAAGATCTGTTGTCTTCAACCAGCTCCATCACAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * * * * ** **
18314046 GAGGGAGGCAAGGTTTG-TGTCTTCGATCTGATTCGC-TGTCAATG
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGA-TC-CATCACAACC
* * *
18314090 CAGGAA-GCAAGATCTTTTATCTTCAACCAGCTCCATCACAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * * * * *** ** **
18314133 GAGGGAGGCTAGGTGTGGTGTCTTCGATTTGATTCGC-TGTCAATG
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGA-TC-CATCACAACC
** * * * *
18314178 TTGGACGGCAAGGTCTTTTGTCTTCAACCAGCTCCATCACAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * * * * * * ** **
18314222 GAGGGAGGCAAGGTTTG-TGTCTTCGATCTGCTTCACTGTCAATG
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCA-TCACAACC
* * *
18314266 CAGGATGGCAAGATC-GTTTGTCTTCAACCAGCTCCATAACAACC
1 CAGGAAGGCAAGATCTG-TTGTCTTCAACCAGATCCATCACAACC
* * * * * * * **
18314310 GA-GAGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC-TGACAATG
1 CAGGA-AGGCAAGATCTGTTGTCTTCAACCAG-ATC-CATCACAACC
* * *
18314354 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * ** ** ** **
18314398 GAGGGAGGCAAGGTTTG-TGTCTTTGACCTACTTCGC-TGTCAATG
1 CAGGAAGGCAAGATCTGTTGTCTTCAACC-AGATC-CATCACAACC
*
18314442 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * * * * ** **
18314486 GAGGGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC-TGTCAATG
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAG-ATC-CATCACAACC
* * *
18314530 CAGGAAGGCAAGATCTTTTGTCTTCAATCAGCTCCATCACAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * * * * ** **
18314574 GA-GAGAGGCTAGGTTTG-TGTCTTCGACCTGCTTCGC-TGTCAATG
1 CAGGA-AGGCAAGATCTGTTGTCTTCAACCAG-ATC-CATCACAACC
* * *
18314618 CAGGAAGGCAAGATCTGTTGTCTTCATCCAGCTCAATCACAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * * * * * **
18314662 TA-GAGAGG-ATAGGTTTG-TGTATTCGACCTGCCTCGCTGTCA-ATGC
1 CAGGA-AGGCA-AGATCTGTTGTCTTCAACCAG-ATC-C-ATCACAACC
* *
18314707 AAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAA--
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * * ** **
18314749 CA-G-AGAG-AAGGTTTG-TGTCTTCAACCTGCTTCGC-TGTCAATG
1 CAGGAAG-GCAAGATCTGTTGTCTTCAACCAG-ATC-CATCACAACC
* * * *
18314791 AAGGAAGGCAAGATCTGTTGTCTTCAACAAGCTCAATCACAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* * * ** * **
18314835 GA-GAGAGGCAAGGTTTG-TGTCTTTGACCTGATTCGC-T-ATCAATG
1 CAGGA-AGGCAAGATCTGTTGTCTTCAACCAGA-TC-CATCA-CAACC
* *
18314879 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCAATCACAACC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
* *
18314923 GAGGGAGGCA
1 CAGGAAGGCA
18314933 GGGCTTGTGT
Statistics
Matches: 1056, Mismatches: 437, Indels: 197
0.62 0.26 0.12
Matches are distributed among these distances:
39 12 0.01
40 14 0.01
41 3 0.00
42 5 0.00
43 210 0.20
44 578 0.55
45 215 0.20
46 19 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGTTGTCTTCAACCAGATCCATCACAACC
Found at i:18316072 original size:88 final size:88
Alignment explanation
Indices: 18315922--18317663 Score: 1616
Period size: 88 Copynumber: 19.5 Consensus size: 88
18315912 NNNNNNNNGA
* * *
18315922 TTCGCTGTCAATGCAGGAACGCAAGATTTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18315987 -ATAGGTTTGTGTATTCGACCTGC
66 CA-AGGTTTGTGTCTTCGACCTGC
* * *
18316010 CTCGCTATCAATGCAGGAAGGCAAGATATGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18316075 CAAGGTTTGTGTCTTCAACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18316098 TTCGCTGTCAGTGCAGGAAGGCAAGATCTGTTGTCTTCAACAAGCTCAATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18316163 CAAGGTTTGTGTCTTTGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* *
18316186 TTCGCTGTCAATGCAGGAAGGCAAAATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* * *
18316251 CAGGGCTTGTGTCTTCGATCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* *
18316274 TTCACTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18316339 CAAGGTTTGTGTCTTTGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18316362 TTCGCTGTCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
18316427 CAAGGTTTGTGTCTTCGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* *
18316450 TTCGCTGTCAATGCAGGAACGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* *
18316515 AAAAGGTTTGTTGTATTCGACCTGC
66 -CAAGGTTTG-TGTCTTCGACCTGC
* *
18316540 CTCGCTATCAATGCAGGAAAGGCAAGATCTGTTGTCTTCAACCCAGCTCCATCACAACCGAGAGA
1 TTCGCTGTCAATGCAGG-AAGGCAAGATCTGTTGTCTTCAA-CCAGCTCCATCACAACCGAGAGA
* *
18316605 GGGAAGGTTTGTGTTCTTTCAACCTGC
64 GGCAAGGTTTGTG-TC-TTCGACCTGC
******************************************************
18316632 TTTCGCTGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 -TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAG
************************
18316697 NNNNNNNNNNNNNNNNNNNNNNNN
65 GCAAGGTTTGTGTCTTCGACCTGC
********************************** *
18316721 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCAACCAGCTCCATCACAACCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* * *
18316786 CAAGGCTTGTGTCTTCGATCTGA
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18316809 TTCGCTGTCAATGCCAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAG
1 TTCGCTGTCAATG-CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAG
18316874 GCAAGGTTTGTGTCTTCGACCTGC
65 GCAAGGTTTGTGTCTTCGACCTGC
* *
18316898 TTCGCTGTCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
18316963 CAAGGTTTGTGTCTTCGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
18316986 TTTCGCTGTCCAATGCAGGAAGGCAAGAATCTGTTGTCTTCAACCCAGCTCCTATCACAACCGAG
1 -TTCGCTGT-CAATGCAGGAAGGCAAG-ATCTGTTGTCTTCAA-CCAGCTCC-ATCACAACCGAG
*
18317051 GGAGGCAAGGTTTGTGTCCTTCGAACCTGC
61 AGAGGCAAGGTTTGTGT-CTTCG-ACCTGC
*
18317081 TTCGCTGTCAAATGCAGGAAGGCAAGATCTTGTTGTCTTCTAACCAGCTCCATCACAACCGATAG
1 TTCGCTGTC-AATGCAGGAAGGCAAGATC-TGTTGTCTTC-AACCAGCTCCATCACAACCGAGA-
18317146 GAGGCAAGGGTTTGTGTCTTTCGACCTCGC
62 GAGGCAA-GGTTTGTGTC-TTCGACCT-GC
*
18317176 TTCTGCTTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGA
1 TTC-GC-TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGA
*
18317241 GGCAAAGTTTGTGTCTTCGACCTGC
64 GGCAAGGTTTGTGTCTTCGACCTGC
* * * * *
18317266 TTCGCTGTCAATGCAGGAACGCAAGATTTTTTGTCTTCAACCAGCTCTATCACAACCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18317331 CAAGGTTTGTGTCTTCGATCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * * *
18317354 TTCGCCGTCAATGCAGGAAGGCAGGATCTTTTGTCTTCAATCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
18317419 CAAGGTTTGTGTCTTCGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * * * *
18317442 TTCGCTGTCAATGCAGGATA-GCAAGATCTGTTCTCTTCAACTAGCTCTATCATAACCGAGGGAG
1 TTCGCTGTCAATGCAGGA-AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAG
*
18317506 GCAAGGTTTGTGTCTTCGATCTGC
65 GCAAGGTTTGTGTCTTCGACCTGC
** ** * *
18317530 TTCGCTGTCAATGCAGGCCGGCCCGATCTTTTGTCTTCAATCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
18317595 CAAGGTTTGTGTCTTCGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* *
18317618 TTCGCTGTCAATGCAGGATGGCAAGATCTGTTCTCTTCAACCAGCT
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCT
18317664 NNNNNNNNNN
Statistics
Matches: 1337, Mismatches: 290, Indels: 54
0.80 0.17 0.03
Matches are distributed among these distances:
88 901 0.67
89 83 0.06
90 50 0.04
91 53 0.04
92 51 0.04
93 58 0.04
94 80 0.06
95 36 0.03
96 21 0.02
97 4 0.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.25
Consensus pattern (88 bp):
TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
CAAGGTTTGTGTCTTCGACCTGC
Found at i:18327770 original size:88 final size:88
Alignment explanation
Indices: 18327609--18328452 Score: 1181
Period size: 88 Copynumber: 9.6 Consensus size: 88
18327599 NNNNNNNNNN
* * *
18327609 TCTTTGACGTGCTTCGCTGTCAAAGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
* * *
18327674 AACCGAGGGAGGCAGGGCTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
** * * * *
18327697 TCTTCGATTTGATTCGCTGTCAATGCAGGAAGGTAAGATTTTTTGTCTTCAACCAGCTCCATCAC
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
* * *
18327762 AACGGAGGGAGACAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * * *
18327785 TCTTCGACCTGCTTCGCTGTCAATGCGGGAAGGCAAGATCTTTTGTTTTCAATCAGCTCCATCAC
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
*
18327850 -ACCGAGAGAGGCAATGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* *
18327872 TCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCCC
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
*
18327937 AACCGAGAGAGGCAAGGTTTATG
66 AACCGAGAGAGGCAAGGTTTGTG
* *
18327960 TATTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
*
18328025 AACCGAGGGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * *
18328048 TCTTCGATCTGATTCGCTGTC-ATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCAC
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
* *
18328112 AACCGAGAGTGGCAAGGTTTATG
66 AACCGAGAGAGGCAAGGTTTGTG
** * * *
18328135 TCTTTAACCTGCTTCGCTGTCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCAGCTCTATCAC
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
* *
18328200 AACCGAGGGAGGCAAAGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * * *
18328223 TCTTCGACCTGCATCGCTTTCAATGCAGGAACGCAAGATCTTTTGTCTTCAACCAGCTCCATCAC
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
18328288 AACCGAGAGAGG-ATAGGTTTGTG
66 AACCGAGAGAGGCA-AGGTTTGTG
* * * * * * *
18328311 TATTCGACTTGCCTCACTGTCAATACAGGAAGGCAAGATCTATTGTCTTCAACCTGCTCCATCAC
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
18328376 AACCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * *
18328399 TCTTCAACGGTGCTTCGCTGTCAATGCTGGAAGGCAAGATCTGTTGTCTTCAAC
1 TCTTCGAC-CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAAC
18328453 ANNNNNNNNN
Statistics
Matches: 665, Mismatches: 86, Indels: 9
0.88 0.11 0.01
Matches are distributed among these distances:
87 157 0.24
88 468 0.70
89 40 0.06
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (88 bp):
TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
AACCGAGAGAGGCAAGGTTTGTG
Found at i:18327926 original size:175 final size:176
Alignment explanation
Indices: 18327609--18328452 Score: 1190
Period size: 175 Copynumber: 4.8 Consensus size: 176
18327599 NNNNNNNNNN
* *
18327609 TCTTTGACGTGCTTCGCTGTCAAAGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
1 TCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
* * ** * * *
18327674 AACCGAGGGAGGCAGGGCTTGTGTCTTCGATTTGATTCGCTGTCAATGCAGGAAGGTAAGATTTT
66 AACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTT
* * *
18327739 TTGTCTTCAACCAGCTCCATCACAACGGAGGGAGACAAGGTTTGTG
131 TTGTCTTCAACCAGCTCCATCACAACCGAGAGAGACAAGGTTTATG
* * * * *
18327785 TCTTCGACCTGCTTCGCTGTCAATGCGGGAAGGCAAGATCTTTTGTTTTCAATCAGCTCCATCAC
1 TCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
* * * *
18327850 -ACCGAGAGAGGCAATGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTG
66 AACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTT
* *
18327914 TTGTCTTCAACCAGCTCCATCCCAACCGAGAGAGGCAAGGTTTATG
131 TTGTCTTCAACCAGCTCCATCACAACCGAGAGAGACAAGGTTTATG
*
18327960 TATTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
1 TCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
* *
18328025 AACCGAGGGAGGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTC-ATGCAGGAAGGCAAGATCTT
66 AACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTT
* *
18328089 TTGTCTTCAACCAGCTCCATCACAACCGAGAGTGGCAAGGTTTATG
131 TTGTCTTCAACCAGCTCCATCACAACCGAGAGAGACAAGGTTTATG
* * * *
18328135 TCTTTAACCTGCTTCGCTGTCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCAGCTCTATCAC
1 TCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
* * * *
18328200 AACCGAGGGAGGCAAAGTTTGTGTCTTCGACCTGCATCGCTTTCAATGCAGGAACGCAAGATCTT
66 AACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTT
* *
18328265 TTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGA-TAGGTTTGTG
131 TTGTCTTCAACCAGCTCCATCACAACCGAGAGA-GACAAGGTTTATG
* * * * * * * *
18328311 TATTCGACTTGCCTCACTGTCAATACAGGAAGGCAAGATCTATTGTCTTCAACCTGCTCCATCAC
1 TCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
* * * *
18328376 AACCGAGAGAGGCAAGGTTTGTGTCTTCAACGGTGCTTCGCTGTCAATGCTGGAAGGCAAGATCT
66 AACCGAGGGAGGCAAGGTTTGTGTCTTCGAC-CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
*
18328441 GTTGTCTTCAAC
130 TTTGTCTTCAAC
18328453 ANNNNNNNNN
Statistics
Matches: 593, Mismatches: 71, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
175 315 0.53
176 238 0.40
177 40 0.07
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (176 bp):
TCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAC
AACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTT
TTGTCTTCAACCAGCTCCATCACAACCGAGAGAGACAAGGTTTATG
Found at i:18328119 original size:263 final size:263
Alignment explanation
Indices: 18327618--18328452 Score: 1226
Period size: 263 Copynumber: 3.2 Consensus size: 263
18327608 NTCTTTGACG
*
18327618 TGCTTCGCTGTCAAAGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* * ** * * *
18327683 AGGCAGGGCTTGTGTCTTCGATTTGATTCGCTGTCAATGCAGGAAGGTAAGATTTTTTGTCTTCA
66 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCA
* * *
18327748 ACCAGCTCCATCACAACGGAGGGAGACAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCGG
131 ACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGA-CTGCTTCGCTGTCAATGCAG
* * *
18327813 GAAGGCAAGATCTTTTGTTTTCAATCAGCTCCATCAC-ACCGAGAGAGGCAATGTTTGTGTCTTC
195 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
*
18327877 GACC
260 AACC
* * *
18327881 TGCTTCGTTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCCCAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* * * *
18327946 AGGCAAGGTTTATGTATTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
66 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCA
*
18328011 ACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTC-ATGCAG
131 ACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGA-CTGCTTCGCTGTCAATGCAG
* * *
18328075 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGTGGCAAGGTTTATGTCTTT
195 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
18328140 AACC
260 AACC
* * *
18328144 TGCTTCGCTGTCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCAGCTCTATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* * * *
18328209 AGGCAAAGTTTGTGTCTTCGACCTGCATCGCTTTCAATGCAGGAACGCAAGATCTTTTGTCTTCA
66 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCA
* * * * *
18328274 ACCAGCTCCATCACAACCGAGAGAGG-ATAGGTTTGTGTATTCGACTTGCCTCACTGTCAATACA
131 ACCAGCTCCATCACAACCGAGGGAGGCA-AGGTTTGTGTCTTCGAC-TGCTTCGCTGTCAATGCA
* *
18328338 GGAAGGCAAGATCTATTGTCTTCAACCTGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTT
194 GGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTT
*
18328403 CAACGG
259 CAAC-C
*
18328409 TGCTTCGCTGTCAATGCTGGAAGGCAAGATCTGTTGTCTTCAAC
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAAC
18328453 ANNNNNNNNN
Statistics
Matches: 511, Mismatches: 56, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
262 42 0.08
263 360 0.70
264 68 0.13
265 41 0.08
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (263 bp):
TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCA
ACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACTGCTTCGCTGTCAATGCAGG
AAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCA
ACC
Found at i:18332371 original size:88 final size:88
Alignment explanation
Indices: 18330644--18332359 Score: 2530
Period size: 88 Copynumber: 19.5 Consensus size: 88
18330634 NNNNNNNNNN
* * * *
18330644 AGGCAGGATCTGTTGTCTTCAACCAGCTCTATCACAACCGAGGGAGGCAAAGTTTGTGTCTTCGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
18330709 CCTGCTTCGCTGTCAATGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * * *
18330732 ACGCAAGATTTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG-ATAGGTTTGTGTATTCG
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCA-AGGTTTGTGTCTTCG
* *
18330796 ACCTGCCTCGCTATCAATGCAGGA
65 ACCTGCTTCGCTGTCAATGCAGGA
*
18330820 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCAA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
18330885 CCTGCTTCGCTGTCAATGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * * * *
18330908 AAGCAAGATCTGTTGTCTTCAACAAGCTCAATCACAACCAAGAGAGGCAAGGTTTGTGTCTTTGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
18330973 CCTGCTTCGCTGTCAATGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * * *
18330996 AGGCAAAATCTGTTGTCTTAAACCAGCTCCATCACAACCGAGGGAGGCAGGGCTTT-TGTCTTCG
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGG-TTTGTGTCTTCG
* *
18331060 ATCTGATTCGCTGTCAATGCAGGA
65 ACCTGCTTCGCTGTCAATGCAGGA
*
18331084 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
*
18331149 CCTGCTTCGCTGTCAATACAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * *
18331172 AGGCAGGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAAGTTTGTGTCTTCGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
18331237 CCTGCTTCGCTGTCAATGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * * * *
18331260 AAGCAAGATCTGTTGTCTTCAACAAGCTCAATCACAACCAAGAGAGGCAAGGTTTGTGTCTTTGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
*
18331325 CCTGCTTCGCTGTCAGTGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * *
18331348 AGGCAAGATCTGTTGTCTTCAACAAGCTCAATCACAACCGAGAGAGGCAAGGTTTGTGTCTTTGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
18331413 CCTGCTTCGCTGTCAATGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * *
18331436 AGGCAAAATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAGGGCTTT-TGTCTTC-
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGG-TTTGTGTCTTCG
* *
18331499 ATTCTGATTCGCTGTCAATGCAGGA
65 A-CCTGCTTCGCTGTCAATGCAGGA
* * * * *
18331524 AGGTAAGATTTTTTGTCTTCAACCAGCTCCATCACAACGGAGGGAGGCAAGGTTTGTGTCTTCGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
* *
18331589 CCTGCTTCACTGTCAATGCGGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * * *
18331612 AGGCAAGATCTTTTGTTTTCAATCAGCTCCATCAC-ACCGAGAGAGGCAATGTTTGTGTCTTCGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
*
18331676 CCTGCTTCGTTGTCAATGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * *
18331699 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCCCAACCGAGAGAGGCAAGGTTTGTGTATTTGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
18331764 CCTGCTTCGCTGTCAATGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
*
18331787 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
* *
18331852 TCTGATTCGCTGTCAATGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * * *
18331875 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGTGGCAAAGTTTGTGTCTTTGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
*
18331940 CCTGCTTCGCTGTCAATACAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * * *
18331963 AGGCAGGATCTGTTGTCTTCAACCAGCTCTATCACAACCGAGGGAGGCAAAGTTTGTGTCTTCGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
18332028 CCTGCTTCGCTGTCAATGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * * *
18332051 ACGCAAGATTTTTTGTCTTC-ACCAGCTCCATCACAA-CGAGAGAGG-ATAGGTTTGTGTATTCG
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCA-AGGTTTGTGTCTTCG
* *
18332113 ACCTGCCTCGCTATCAATGCAGGA
65 ACCTGCTTCGCTGTCAATGCAGGA
*
18332137 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCAA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
* *
18332202 CCTACTTCGCTGTCGATGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * *
18332225 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAGGGCTTGTGTCTTCGA
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
* *
18332290 TCTGATTCGCTGTCAATGCAGGA
66 CCTGCTTCGCTGTCAATGCAGGA
* * * * * * *
18332313 AGGTAAGATTTTTTGTCTTCAACCACCTCCAACACAACGGAGGGAGG
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
18332360 TTTGGTTTGT
Statistics
Matches: 1466, Mismatches: 149, Indels: 26
0.89 0.09 0.02
Matches are distributed among these distances:
85 1 0.00
86 60 0.04
87 116 0.08
88 1280 0.87
89 9 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (88 bp):
AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
CCTGCTTCGCTGTCAATGCAGGA
Found at i:18333211 original size:88 final size:88
Alignment explanation
Indices: 18333062--18336373 Score: 2832
Period size: 88 Copynumber: 37.5 Consensus size: 88
18333052 NNNNNNNNNN
* * *
18333062 AGGCAAGCTTTGTGTCTTTGACCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
* *
18333127 ACAAGCTCAATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* *
18333150 AGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAAATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
*
18333215 ACCAGCTCCATCACAACCGAGGG
66 ACCAGCTCCATCACAACCGAGAG
* * * * * *
18333238 AGGCAGGGCTTT-TGTCTTC-ATTCTGATTCGCTGTCAATGCAGGAAGGTAAGATTTTTTGTCTT
1 AGGCAAGG-TTTGTGTCTTCGA-CCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTT
* *
18333301 CAACCAGCTCCATCACAACGGAGGG
64 CAACCAGCTCCATCACAACCGAGAG
* * * *
18333326 AGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCGGGAAGGCAAGATCTTTTGTTTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
*
18333391 ATCAGCTCCATCAC-ACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* *
18333413 AGGCAATGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
* *
18333478 ACCAGCTCCATCCCAATCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* *
18333501 AGGCAAGGTTTGTGTATTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
*
18333566 ACCAGCTCCATCACAACCGAGGG
66 ACCAGCTCCATCACAACCGAGAG
* * *
18333589 AGGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
18333654 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * * *
18333677 TGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCAATACAGGAAGGCAGGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
* *
18333742 ACCAGCTCTATCACAACCGAGGG
66 ACCAGCTCCATCACAACCGAGAG
* * * * *
18333765 AGGCAAAGTTTGTGTCTTCGACGTGCTTCGCTGTC-ATGCAGGAACGCAAGATTTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
*
18333829 ACCAGCT-CATAACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * * ************************
18333851 AGG-ATAGGTTTGTGTATTCGACCTGCCTCGCTATCAATGCNNNNNNNNNNNNNNNNNNNNNNNN
1 AGGCA-AGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
************************
18333915 NNNNNNNNNNNNNNNNNNNNNNNN
65 AACCAGCTCCATCACAACCGAGAG
**********************************************************
18333939 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
18334004 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * *
18334027 AGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCAATACAGGAAGGCAGGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
*
18334092 ACCAGCTCCATCACAACCGAGGG
66 ACCAGCTCCATCACAACCGAGAG
* * * *
18334115 AGGCAAAGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAACGCAAGATTTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
18334180 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* *
18334203 AGGCAAGGTTTGTGTCTTCAACCTGCTTCGCTGTCAATGCAGGAAAGCAAGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
* * *
18334268 ACAAGCTCAATCACAACCAAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * *
18334291 AGGCAAGCTTTGTGTCTTTGA-C--C-T-GC--TCAGTGCAGGAAGGCAAGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
* *
18334349 ACAAGCTCAATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * *
18334372 AGGCAAGGTTTGTGTCTTTGACCTTCTTCGCTGTCAATGCAGGAAGGCAAAATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
*
18334437 ACCAGCTCCATCACAACCGAGGG
66 ACCAGCTCCATCACAACCGAGAG
* * * * * *
18334460 AGGCATGGCTTT-TGTCTTC-ATTCTGATTCGCTGTCAATGCAGGAAGGTAAGATTTTTTGTCTT
1 AGGCAAGG-TTTGTGTCTTCGA-CCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTT
*
18334523 CAACCAGCTCCATCACAACGGACG-G
64 CAACCAGCTCCATCACAACCGA-GAG
* * *
18334548 AGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCGGGAAGGCAAGATCTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
*
18334613 ACCAGCTCCATCAC-ACCGAAAG
66 ACCAGCTCCATCACAACCGAGAG
* * ** *
18334635 AAGCAATGG-TTGGGTCTTCGAATATGCTTTC-CTGGCCAATGCAGGAAGGGCAAGGATCTGTTG
1 AGGCAA-GGTTTGTGTCTTCG-ACCTGC-TTCGCT-GTCAATGCAGGAA-GGCAA-GATCTGTTG
*
18334698 TCTTCCACCCAGCTCCATCACAACCGAGAG
60 TCTT-CAACCAGCTCCATCACAACCGAGAG
* * *
18334728 AGGCAAAGGTTTTGTGTACTTCGACCAGGTTTCGCTGTCAATGCAGGAAGGTAAGATCTGTTGTC
1 AGGC-AAGG-TTTGTGT-CTTCGACC-TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTC
*
18334793 TTCAACCAGCTCCATCACAACCGAGGG
62 TTCAACCAGCTCCATCACAACCGAGAG
* *
18334820 AGGCAAGGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAAGGCAAGATCTTGTTGTCTT
1 AGGCAA-GGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC-TGTTGTC-T
18334885 TCAACCAGCTCCATCACAACTCGAGAG
63 TCAACCAGCTCCATCACAAC-CGAGAG
18334912 TAGGCAAGGGTTTGTGTCTTTCGACCTGCTTCGCTGTCAATAGCAGGAAGGCAAGATCTGTTGTC
1 -AGGCAA-GGTTTGTGTC-TTCGACCTGCTTCGCTGTCAAT-GCAGGAAGGCAAGATCTGTTGTC
*
18334977 TTCAACCAGCTCCATCATCAACCGAGGG
62 TTCAACCAGCTCCATCA-CAACCGAGAG
* * ***************
18335005 AGGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAAGGCNNNNNNNNNNNNNNNNN
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGC--AAGATCTGTTGTCTT
*************************
18335070 NNNNNNNNNNNNNNNNNNNNNNNNN
64 CAACCAGCTCCATCACAACCGAGAG
**********************************************************
18335095 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
*
18335160 ACCAGCTCCATCACAACCGAGGG
66 ACCAGCTCCATCACAACCGAGAG
* * *
18335183 AGGCAAGGTTTGTGTCTTCGACCCGTTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
*
18335248 ATCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * *
18335271 AGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAGGTAGGCAAGATCTGCTGTC-TCT
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC-
18335335 AACCAGCTCCATCACAACCGAGAG
65 AACCAGCTCCATCACAACCGAGAG
* * * *
18335359 AGCCAAGGTTTGTGTCTTCGATCTGATTCGCTCTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
** *
18335424 ACCAGCTTTATCACAACCGAGGG
66 ACCAGCTCCATCACAACCGAGAG
* * * * *
18335447 AGGTAAGGTTTGTGTCTTCGATCTGCATCGCTGTCAACGCAGGAAGGCAAGATCTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
18335512 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* *
18335535 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGGAGGAAGGCAAGATCTGCTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
* *
18335600 ACCAACTCCATCACAACCGAGGG
66 ACCAGCTCCATCACAACCGAGAG
* * * *
18335623 AGGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAAGGCAAGATCTGCTGTCTTAA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
* * *
18335688 ACTAGCCCCATCACAACTGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* *
18335711 AGGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
* *
18335776 ACCAGCTCTATCACAACCGAGGG
66 ACCAGCTCCATCACAACCGAGAG
* * * * *
18335799 AGGTAAGGTTTGTGTCTTCGACATGCTTCGCTATCAATGCAGGAAGGCAAGATCTTTTATCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
18335864 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* *
18335887 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATTCAGGAAGGCAAGATCTGCTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
18335952 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * * *
18335975 AGG-ATAGGTTTGTGTATTCGACCTACCTCACTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
1 AGGCA-AGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* * *
18336039 AACCCCGCTCCCTCACAACTGAGAG
65 AA-CCAGCTCCATCACAACCGAGAG
*** ** * * *
18336064 AGGCACCCCTTCCCTGTCTTTGACCTGATTCGCTATCAATGCAGGAAGGCAAGATCTGTTGTCTT
1 AGGCA-AGGTT-TGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTT
*
18336129 CAACCAGCTCCATCACAACCGAGGG
64 CAACCAGCTCCATCACAACCGAGAG
* * * * * * *
18336154 AGGCAGGGCTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAAGGTAAGATTTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
*
18336219 ACCAGCTCCATCACAACCGAGGG
66 ACCAGCTCCATCACAACCGAGAG
* * * ** *
18336242 AGGTAAGGTTTGTGTCTTCGACCTGCTTCGCTGTTAATACAGGAAGGCTGGATCTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
* *
18336307 ATCAGCTCCATCGCAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
18336330 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGA
18336374 NNNNNNNNNN
Statistics
Matches: 2546, Mismatches: 626, Indels: 104
0.78 0.19 0.03
Matches are distributed among these distances:
81 72 0.03
82 1 0.00
83 2 0.00
84 2 0.00
85 3 0.00
86 42 0.02
87 144 0.06
88 1829 0.72
89 86 0.03
90 65 0.03
91 99 0.04
92 55 0.02
93 64 0.03
94 37 0.01
95 37 0.01
96 8 0.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.25
Consensus pattern (88 bp):
AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
ACCAGCTCCATCACAACCGAGAG
Found at i:18334964 original size:47 final size:46
Alignment explanation
Indices: 18334820--18335052 Score: 130
Period size: 47 Copynumber: 5.1 Consensus size: 46
18334810 CAACCGAGGG
* *
18334820 AGGCAAGGGTTTGTGTC-TTCGATCTGATTCGCTGTCAATGCAGGA
1 AGGCAAGGGTTTGTGTCTTTCGACCTGCTTCGCTGTCAATGCAGGA
* * * ** *
18334865 AGGCAA-GATCTTGTTGTCTTTCAACCAGC-TC-CATCACAACT-CGAGAGT
1 AGGCAAGGGT-TTG-TGTCTTTCGACCTGCTTCGC-TGTCAA-TGC-AG-GA
18334913 AGGCAAGGGTTTGTGTCTTTCGACCTGCTTCGCTGTCAATAGCAGGA
1 AGGCAAGGGTTTGTGTCTTTCGACCTGCTTCGCTGTCAAT-GCAGGA
* * * * * * *
18334960 AGGCAA-GATCTGTTGTC-TTCAACCAGC-TC-CATCATCAA-CCGAGGG
1 AGGCAAGGGTTTG-TGTCTTTCGACCTGCTTCGC-T-GTCAATGC-AGGA
* *
18335005 AGGCAA-GGTTTGTGTC-TTCGATCTGATTCGCTGTCAATGCAGGA
1 AGGCAAGGGTTTGTGTCTTTCGACCTGCTTCGCTGTCAATGCAGGA
18335049 AGGC
1 AGGC
18335053 NNNNNNNNNN
Statistics
Matches: 139, Mismatches: 30, Indels: 39
0.67 0.14 0.19
Matches are distributed among these distances:
44 25 0.18
45 30 0.22
46 28 0.20
47 34 0.24
48 18 0.13
49 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (46 bp):
AGGCAAGGGTTTGTGTCTTTCGACCTGCTTCGCTGTCAATGCAGGA
Found at i:18336260 original size:43 final size:43
Alignment explanation
Indices: 18336123--18336260 Score: 109
Period size: 44 Copynumber: 3.2 Consensus size: 43
18336113 CAAGATCTGT
* * *
18336123 TGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAGGGCTTG
1 TGTCTTCAACCAGCTCCATCACAACCGAGGGAGGTAAGGTTTG
* * * * ** * * * *
18336166 TGTCTTCGATCTGATTCGC-TGTCAA-TGCAGGAAGGTAAGATTTTT
1 TGTCTTCAACCAG-CTC-CATCACAACCG-AGGGAGGTAAG-GTTTG
18336211 TGTCTTCAACCAGCTCCATCACAACCGAGGGAGGTAAGGTTTG
1 TGTCTTCAACCAGCTCCATCACAACCGAGGGAGGTAAGGTTTG
18336254 TGTCTTC
1 TGTCTTC
18336261 GACCTGCTTC
Statistics
Matches: 66, Mismatches: 23, Indels: 12
0.65 0.23 0.12
Matches are distributed among these distances:
43 22 0.33
44 30 0.45
45 14 0.21
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.28
Consensus pattern (43 bp):
TGTCTTCAACCAGCTCCATCACAACCGAGGGAGGTAAGGTTTG
Found at i:18336759 original size:88 final size:88
Alignment explanation
Indices: 18336611--18337146 Score: 733
Period size: 88 Copynumber: 6.1 Consensus size: 88
18336601 TGCTTTGCCA
* *
18336611 TTCGCTG-CAATGCA-G-A-GCAGGATCT-TTGTCTTCAATCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
18336671 CAAGGTTTGTGTCTTCGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * * * *
18336694 TTCACTGTCAATGCAGGATGGCAAGATCTGTTGTCTTCAACCAGCTCTATCATAACCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* *
18336759 CAAGGTTTGTGTCTTCGATCTAC
66 CAAGGTTTGTGTCTTCGACCTGC
* *
18336782 TTCGCTGCCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
** *
18336847 CAAGGTTTGTGTCTTCGATATGA
66 CAAGGTTTGTGTCTTCGACCTGC
* * * * * * *
18336870 TTCGCTGTCAATGCAGGAAGGCAAGGTCTTTTATCTTTAACCAGCTCTATCACAACCGAGGGACG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18336935 CAAGGTTTGTGTCTTTGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * * * * *
18336958 TTCCCTATCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCAGCTCCATTACCACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18337023 -ATAGGTTTGTGTATTCGACCTGC
66 CA-AGGTTTGTGTCTTCGACCTGC
* *
18337046 CTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCCCAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18337111 CAAGGTTTGTGTCTTCAACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
18337134 TTCGCTGTCAATG
1 TTCGCTGTCAATG
18337147 NNNNNNNNNN
Statistics
Matches: 390, Mismatches: 56, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
83 6 0.02
84 7 0.02
85 1 0.00
87 9 0.02
88 366 0.94
89 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (88 bp):
TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
CAAGGTTTGTGTCTTCGACCTGC
Found at i:18336804 original size:44 final size:44
Alignment explanation
Indices: 18336756--18336896 Score: 107
Period size: 44 Copynumber: 3.2 Consensus size: 44
18336746 TAACCGAGGG
18336756 AGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATGCAGGA
* * * * *
18336800 AGGCAAGATCTTTTGTCTTC-AACCAGC-TC-CAT-CACAA--CCGAGA
1 AGGCAAGGT-TTGTGTCTTCGATCTA-CTTCGC-TGC-CAATGCAG-GA
* *
18336843 GAGGCAAGGTTTGTGTCTTCGATATGA-TTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGATCT-ACTTCGCTGCCAATGCAGGA
18336888 AGGCAAGGT
1 AGGCAAGGT
18336897 CTTTTATCTT
Statistics
Matches: 72, Mismatches: 12, Indels: 26
0.65 0.11 0.24
Matches are distributed among these distances:
42 2 0.03
43 13 0.18
44 41 0.57
45 14 0.19
46 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATGCAGGA
Found at i:18336880 original size:176 final size:176
Alignment explanation
Indices: 18336474--18337146 Score: 843
Period size: 176 Copynumber: 3.8 Consensus size: 176
18336464 NNNNNNNNNN
* * * * * *
18336474 ATCACAACCGAAAGAGGCAGGGCTTGTGTCTTCGATCTGATTCGCTGTCGATGCAGGAAGGTAAG
1 ATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGAAGGCAAG
* * * * *
18336539 ATTTTTTGTCTTCAACAAGCTCCATTACAACCGAGGGAGGTAAGGTTTGTGTCTTCGACCTGTGC
66 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACC--TGC
* *
18336604 TTTGCCATTCGCTGCAATGCA-G-A-GCAGGATC-TTTGTCTTCAATCAGCTCC
129 TTCG-C--T-G-T-CAATGCAGGAAGGCAGGATCTTTTGTCTTCAACCAGCTCC
* * *
18336654 ATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAGGATGGCAAG
1 ATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGAAGGCAAG
* * * *
18336719 ATCTGTTGTCTTCAACCAGCTCTATCATAACCGAGGGAGGCAAGGTTTGTGTCTTCGATCTACTT
66 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTT
* *
18336784 CGCTGCCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCC
131 CGCTGTCAATGCAGGAAGGCAGGATCTTTTGTCTTCAACCAGCTCC
**
18336830 ATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATATGATTCGCTGTCAATGCAGGAAGGCAAG
1 ATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGAAGGCAAG
* * * * * * *
18336895 GTCTTTTATCTTTAACCAGCTCTATCACAACCGAGGGACGCAAGGTTTGTGTCTTTGACCTGCTT
66 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTT
* * * *
18336960 CCCTATCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCAGCTCC
131 CGCTGTCAATGCAGGAAGGCAGGATCTTTTGTCTTCAACCAGCTCC
* * * **
18337006 ATTACCACCGAGAGAGG-ATAGGTTTGTGTATTCGACCTGCCTCGCTGTCAATGCAGGAAGGCAA
1 ATCACAACCGAGAGAGGCA-AGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGAAGGCAA
* * *
18337070 GATCTGTTGTCTTCAACCAGCTCCATCCCAACCGAGAGAGGCAAGGTTTGTGTCTTCAACCTGCT
65 GATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCT
18337135 TCGCTGTCAATG
130 TCGCTGTCAATG
18337147 NNNNNNNNNN
Statistics
Matches: 426, Mismatches: 62, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
172 7 0.02
173 1 0.00
174 2 0.00
175 9 0.02
176 293 0.69
177 1 0.00
178 5 0.01
180 108 0.25
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (176 bp):
ATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGAAGGCAAG
ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTT
CGCTGTCAATGCAGGAAGGCAGGATCTTTTGTCTTCAACCAGCTCC
Found at i:18337060 original size:264 final size:260
Alignment explanation
Indices: 18336474--18337146 Score: 830
Period size: 264 Copynumber: 2.5 Consensus size: 260
18336464 NNNNNNNNNN
* * * * * *
18336474 ATCACAACCGAAAGAGGCAGGGCTTGTGTCTTCGATCTGATTCGCTGTCGATGCAGGAAGGTAAG
1 ATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAG
* * * * *
18336539 ATTTTTTGTCTTCAACAAGCTCCATTACAACCGAGGGAGGTAAGGTTTGTGTCTTCGACCTGTGC
66 ATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA-------
* * *
18336604 TTTGCCATTCGCTG-CAATGCAGAGCAGGATCTTTGTCTTCAATCAGCTCCATCACAACCGAGAG
124 TATG--ATTCGCTGTCAATGCAGAGCAGGATCTTTATCTTCAACCAGCTCCATCACAACCGAGAG
* * * *
18336668 AGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAGGATGGCAAGATCTGTTGTCTTCA
187 ACGCAAGGTTTGTGTCTTCGACCTGCTTCACTATCAATACAGGAAGGCAAGATCTGTTGTCTTCA
*
18336733 ACCAGCTCT
252 ACCAGCTCC
* * * *
18336742 ATCATAACCGAGGGAGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATGCAGGAAGGCAAG
1 ATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAG
18336807 ATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATATGATT
66 ATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATATGATT
* * *
18336872 CGCTGTCAATGCAGGAAGGCAAGG-TCTTTTATCTTTAACCAGCTCTATCACAACCGAGGGACGC
131 CGCTGTCAATGCA-G-A-GC-AGGATC-TTTATCTTCAACCAGCTCCATCACAACCGAGAGACGC
* * *
18336936 AAGGTTTGTGTCTTTGACCTGCTTCCCTATCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCA
191 AAGGTTTGTGTCTTCGACCTGCTTCACTATCAATACAGGAAGGCAAGATCTGTTGTCTTCAACCA
18337001 GCTCC
256 GCTCC
* * * * *
18337006 ATTACCACCGAGAGAGG-ATAGGTTTGTGTATTCGACCTGCCTCGCTGTCAATGCAGGAAGGCAA
1 ATCACAACCGAGAGAGGCA-AGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAA
* * * ** *
18337070 GATCTGTTGTCTTCAACCAGCTCCATCCCAACCGAGAGAGGCAAGGTTTGTGTCTTCAACCTGCT
65 GATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATATGAT
18337135 TCGCTGTCAATG
130 TCGCTGTCAATG
18337147 NNNNNNNNNN
Statistics
Matches: 354, Mismatches: 44, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
259 8 0.02
260 7 0.02
261 4 0.01
262 1 0.00
263 5 0.01
264 221 0.62
268 108 0.31
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (260 bp):
ATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAG
ATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATATGATT
CGCTGTCAATGCAGAGCAGGATCTTTATCTTCAACCAGCTCCATCACAACCGAGAGACGCAAGGT
TTGTGTCTTCGACCTGCTTCACTATCAATACAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
Found at i:18341689 original size:88 final size:88
Alignment explanation
Indices: 18341535--18342265 Score: 1068
Period size: 88 Copynumber: 8.1 Consensus size: 88
18341525 NNNNNNNNNN
* *
18341535 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAAGTTTGTGTCTTCGACCTGCTT
1 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTT
* *
18341600 CGCTGTCAATGCAGGAACGTAAG
66 CGCTGTCAATGCAGGAAGGCAAG
* * *
18341623 ATTTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG-ATAGGTTTGTGTATTCGACCTGCT
1 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCA-AGGTTTGTGTCTTCGACCTGCT
*
18341687 TCGCTATCAATGCAGGAAGGCAAG
65 TCGCTGTCAATGCAGGAAGGCAAG
* *
18341711 ATATGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCAACCTGCTT
1 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTT
*
18341776 CGCTGTCAGTGCAGGAAGGCAAG
66 CGCTGTCAATGCAGGAAGGCAAG
* * *
18341799 ATCTGTTGTCTTCAACAAGCTCAATCACAACCGAGAGAGGCAAGGTTTGTGTCTTTGACCTGCTT
1 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTT
18341864 CGCTGTCAATGCAGGAAGGCAAG
66 CGCTGTCAATGCAGGAAGGCAAG
* * * * *
18341887 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAGGGTTTTTGTCTTCGATCTGATT
1 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTT
*
18341952 CGCTCTCAATGCAGGAAGGCAAG
66 CGCTGTCAATGCAGGAAGGCAAG
18341975 ATCTGTTGTCTTCAACCAGCTCCATCACAAACCGAGAGAGGCAAGGTTTGTGTCTTTCGACCTGC
1 ATCTGTTGTCTTCAACCAGCTCCATCAC-AACCGAGAGAGGCAAGGTTTGTGTC-TTCGACCTGC
18342040 TTCGCTGTCAATGCAGGAAGGCAAG
64 TTCGCTGTCAATGCAGGAAGGCAAG
* *
18342065 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAAGATTGTGTCTTCGACCTGCTT
1 ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTT
18342130 CGCTGTCAATGCAGGAAGGCAAG
66 CGCTGTCAATGCAGGAAGGCAAG
* *
18342153 ATCTTGTTGTCTTCAACCAGCTCTCATCCACAAGCGGAGAGGAGGCAAGGATTTGCGTCTTTCGA
1 ATC-TGTTGTCTTCAACCAGCTC-CAT-CACAA-CCGAGA-GAGGCAAGG-TTTGTGTC-TTCGA
* * *
18342218 TCTGCCTTCGTCTGTCCATGGCAGGAAAGGCATG
59 CCTG-CTTCG-CTGTCAAT-GCAGG-AAGGCAAG
*
18342252 AACCTGTTGTCTTC
1 -ATCTGTTGTCTTC
18342266 NNNNNNNNNN
Statistics
Matches: 582, Mismatches: 45, Indels: 21
0.90 0.07 0.03
Matches are distributed among these distances:
87 1 0.00
88 385 0.66
89 65 0.11
90 63 0.11
91 5 0.01
92 5 0.01
93 8 0.01
94 6 0.01
95 8 0.01
96 5 0.01
97 7 0.01
98 5 0.01
99 17 0.03
100 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (88 bp):
ATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTT
CGCTGTCAATGCAGGAAGGCAAG
Found at i:18350942 original size:88 final size:88
Alignment explanation
Indices: 18350571--18353280 Score: 3838
Period size: 88 Copynumber: 30.8 Consensus size: 88
18350561 NNNNNNNNNN
* *
18350571 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACAAGCTCCCATCCACAACCGAGGGA
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCT-CCAT-CACAACCGAGAGA
* *
18350636 GGCAAGGTTTGTGTCTTCGATCTGA
64 GGCAAGGTTTGTGTCTTCGACCTGC
* * * *
18350661 TTCGCTGTCAATGCAGGAAGGCAAGATTTTTTGTCTTCAACCCAGATCCATCACAACCGAGGGAG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA-CCAGCTCCATCACAACCGAGAGAG
18350726 GCAAGGTTTGTGTCTTCGACCTGC
65 GCAAGGTTTGTGTCTTCGACCTGC
* * * *
18350750 TTCGCTATCAATGCAGGAAGGCAAGATCTTTTGTTTTCAATCAGCTCCATCAC-ACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
18350814 CAAGGTTTGTGTCTTCGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18350837 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTATTCAACCAGCTCCATCCCAACCAAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* * * *
18350902 CAAGGTTTGTGTATTTGTCCTCC
66 CAAGGTTTGTGTCTTCGACCTGC
* * * * * *
18350925 TTCGCTGTCAATACAGGAAGGCAAGATTTTTTATCTTCAACCAGCTCCATCACAATCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
18350990 CAAGGTTTGTGTCTTCGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * ** * * *
18351013 GTCGCTGTCAATACAGGAAGGCAAGATCTGTTGTCTTCAACCAAATCCATCATAACTGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* * * *
18351078 CAAGGTTAGTGTCTTTGACATAC
66 CAAGGTTTGTGTCTTCGACCTGC
* * * * *
18351101 TTCCCTGACAATGAAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCATAATCGAG-GTAG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG-AG
*
18351165 GCAAGGTTTGTGTCTTTGACCTGC
65 GCAAGGTTTGTGTCTTCGACCTGC
* * * * *
18351189 TTCGGTGACAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAAAACCCAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* *
18351254 CAAGGTTTGTGTCTTCGATCTGA
66 CAAGGTTTGTGTCTTCGACCTGC
* *
18351277 TTCGCTGCCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
**
18351342 CAAGGTTTGTGTCTTCGAAATGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18351365 TTCGCTGTCAACGCAGGAAGGTAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
** *
18351430 CAAGGTTTGTGTCTTCGATTTGA
66 CAAGGTTTGTGTCTTCGACCTGC
* * * * *
18351453 TTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCACCCAGCTCCATCACAATCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* *
18351518 CAAGGTTTGTGTCTTCGATCTGA
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18351541 TTCACTGTCAATGCAGGAAGGCAAGAT-TGTTGTCTTCAACCAGCTCCACCACAACTGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* * *
18351605 CAAGATTTGTGTCTTTGACCTGT
66 CAAGGTTTGTGTCTTCGACCTGC
*
18351628 TTCGCTGTCAATGCAGGAATGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18351693 CAAAGTTTGTGTCTTCGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18351716 TTCGCTGTCAATGCAGGAAGGCAAGATTTTTTGTCTTCAACCAGCTCCATCACAACTGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18351781 -ATAGGTTTGTGTATTCGACCTGC
66 CA-AGGTTTGTGTCTTCGACCTGC
* * *
18351804 CTCGCTATCAATGCAGGAAGGCAAGATCTGTTGTCTTCAAACCAGCTCCATCACAACTGAGAGAG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC-AACCAGCTCCATCACAACCGAGAGAG
*
18351869 GCAAGGTTTGTGTCTTCAACCTGC
65 GCAAGGTTTGTGTCTTCGACCTGC
* * *
18351893 TTCGCTGTCAATGCAAGAAGGCAAGATCTGTTGTCTTCAACAAGCTCAATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18351958 CAAGGTTTGTGTCTTTGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * * * *
18351981 TTCACTGTCAATGTAGGAAGGCAAAATCTGTTGTCTTCAACCAGCTCCATCACATCCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* * * *
18352046 CAGGGCTTGTGTCTTCGATCTGA
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18352069 TTCGCTGTCAATGCAGGAAGGTAAGATTTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* *
18352134 -ATAGGTTTTTGTATTCGACCTGC
66 CA-AGGTTTGTGTCTTCGACCTGC
* *
18352157 CTCGCTATCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* *
18352222 CAAGGTGTGTGTCTTCAACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18352245 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACAAGCTCAATCACAACCAAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18352310 CAAGGTTTGTGTCTTTGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * * *
18352333 TTCGCTGTCAACGCAGGAAGGCAAAATCTGTTGTCTTAAACCAGCTCCATCACAACCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* **
18352398 CAGGGCTTT-TGTCTTCGATAT-C
66 CAAGG-TTTGTGTCTTCGACCTGC
* *
18352420 ATTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAGCCAGCTCCATCACAACCGAGAGAG
1 -TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAG
18352485 GCAAGGTTTGTGTCTTCGACCTGC
65 GCAAGGTTTGTGTCTTCGACCTGC
* * *
18352509 TTCGCTGTCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18352574 CAAAGTTTGTGTCTTCGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18352597 TTCGCTGTCAATGCAGGAACGCAAGATTTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18352662 -ATAGGTTTGTGTATTCGACCTGC
66 CA-AGGTTTGTGTCTTCGACCTGC
* * *
18352685 CTCGCTATCAATGCAGGAAGGCAAGATATGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18352750 CAAGGTTTGTGTCTTCAACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18352773 TTCGCTGTCAGTGCAGGAAGGCAAGATCTGTTGTCTTCAACAAGCTCAATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18352838 CAAGGTTTGTGTCTTTGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* *
18352861 TTCGCTGTCAATGCAGGAAGGCAAAATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
* * * *
18352926 CAGGGCTTT-TGTCTTCAATCTGA
66 CAAGG-TTTGTGTCTTCGACCTGC
* * * * *
18352949 TTCGCTCTCAATGCAGCAAGGTAAGATTTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18353014 CAAGGTTTGTGTCTTTGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* * *
18353037 TTCGCTGTCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
*
18353102 CAAAGTTTGTGTCTTCGACCTGC
66 CAAGGTTTGTGTCTTCGACCTGC
* *
18353125 TTCGCTGTCAATGCAGGAACGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
**
18353190 -ATAGGTTTGTGTAATCGACCTGC
66 CA-AGGTTTGTGTCTTCGACCTGC
* * *
18353213 CTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGTCACAACTGAGAGAGG
1 TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
18353278 CAA
66 CAA
18353281 NNNNNNNNNN
Statistics
Matches: 2333, Mismatches: 267, Indels: 42
0.88 0.10 0.02
Matches are distributed among these distances:
87 167 0.07
88 1954 0.84
89 165 0.07
90 43 0.02
91 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (88 bp):
TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGG
CAAGGTTTGTGTCTTCGACCTGC
Found at i:18363152 original size:44 final size:44
Alignment explanation
Indices: 18363047--18366776 Score: 1049
Period size: 44 Copynumber: 84.8 Consensus size: 44
18363037 AATGCTTCGT
* *
18363047 TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * * *
18363090 -ATCACA-ACCGAGAGAGGCAAGGTTTG-TGTCTTCAATCTGATTCGC
1 TGTCA-ATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
*
18363135 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * *
18363178 -ATCACA-ACCGAGAGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCAC
1 TGTCA-ATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18363223 TGTCAATGTAGGAAGGCAATATCTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * * **
18363266 -ATCACAACCGAGGGAGGCAAGGTTTG-TGTCTTTGACCTGCTTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
18363311 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA-CTAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCT-GCTTCC
* * * * *
18363354 -ATCACA-ACCGAGAGAGGCAAGGTTTG-TGTCTTCAACCTGCTTCGC
1 TGTCA-ATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* **
18363399 TGTCAATGCAGGAAAGCAAGATCTGTTGTCTTCAACAAGC-T-C
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
** ** * * * **
18363441 AATCACAACCAAGAGAGGCAAGGTTTG-TGTCTTTGACCTGCTTCGC
1 TGTCA-ATGCAGGA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18363487 TGTCAATGCAGGAAGGCAAAATCTGTTGTCTTAAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * ** * * * *
18363530 -ATCACAACCGAGGGAGGC-AGGGCTTTTGTCTTCGATCTGATTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18363575 TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAGCCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * *
18363618 -ATCACA-ACCGAGAGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC
1 TGTCA-ATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18363663 TGTCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * *
18363706 -ATCACAACCGAGGGAGGCAA-AGTTTG-TGTCTTCGACCTGCTTCGC
1 TGTCA-ATGC-AGGAAGGCAAGA-TCTGTTGTCTTCAACCTGCTTC-C
* * * *
18363751 TGTCAATGCAGGAACGCAAGATTTTTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * * * *
18363794 -ATCACA-ACCGAGAGAGG-ATAGGTTTG-TGTATTCGACCTGCCTCGC
1 TGTCA-ATGCAG-GA-AGGCA-AGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18363839 TATCAATGCAGGAAGGCAAGATTTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
** * * *
18363882 ATAACAA--CCGAGAGAGGCAAGGTTTG-TGTCTTCAACCTGCTTCGC
1 -TGTCAATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* **
18363927 TGTCAATGCAGGAAAGCAAGATCTGTTGTCTTCAACAAGC-T-C
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
** ** * * * **
18363969 AATCACAACCAAGAGAGGCAAGCTTTG-TGTCTTTGACCTCGCTTCAC
1 TGTCA-ATGCAGGA-AGGCAAGATCTGTTGTCTTCAACCT-GCTTC-C
* **
18364016 TGTCAATGTAGGAAGGCAAGATCTGTTGTCTTCAACCAAC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
** * * * * *
18364059 ATCACAACTG-AGGGAGGCAAGTTTTG-TGTCTGT-GACATGCTTCCC
1 -TGTCAA-TGCAGGAAGGCAAGATCTGTTGTCT-TCAACCTGCTT-CC
* * * * *
18364104 TGACAATGCGGGAAGGCAAGATCTGTTGACTTCTACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * * * *
18364147 -ATCACAACCGAGGGAGGCAAGGT-T-TCTGTCTTCGATCTGATTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGT-TGTCTTCAACCTGCTTC-C
* * * *
18364192 TGCCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGC-GCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * *
18364235 -ATCACAACCGAGGGAGGCAAGGT-T-TCTGTCTTCGACCTGCTTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGT-TGTCTTCAACCTGCTTC-C
* *
18364280 TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAG-TTCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
** * * * * * *
18364323 ATCACAACCGAAAG-AGGCAAGGTTTGTT-TCTTCGACCTGCTTCGC
1 -TGTCAA-TGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
*
18364368 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGC-T-C
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * **
18364410 TATCACAACTG-AGGGAGGCAAGGTTTG-TGTCTTCGATATGCTTCGC
1 TGT--CAA-TGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18364456 TGTCAATGCTGGAAGGCAAGATCTTTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * *
18364499 -ATCACA-ACCGAGAGAGGCAAGGTTTG-TGTCTTCGACAC-GCTTCAC
1 TGTCA-ATGCAG-GA-AGGCAAGATCTGTTGTCTTCAAC-CTGCTTC-C
* * *
18364544 TGTCATTGCAGGAAGGGAAGATCTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * * * * *
18364587 -ATCACAACCGAGGGAGGTAAGGTTTG-TGTTTTCGACCTGCTTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* **
18364632 TGTCAATACAGGAAGGCAAGATCTGTTGTCTTCAACCAAC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * *
18364675 -ATCACA-GCCGAGGGAGGCAAGGTTTG-TGTCTTCGATCTGCTTCGC
1 TGTCA-ATG-C-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * * * *
18364720 TGTCAATGCCGGAAGGCAAGACCTTTTGTCTTTAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
** * * ** *
18364763 ATCACAACTG-A-GAGAGGCAAGGTTTG-TGTCTTTGACCCGCTTCGC
1 -TGTCAA-TGCAGGA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* *
18364808 TGTCAATGCAAGAAGGCAAGATCTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * * ** *
18364851 -ATCACAACCGAGGGAGGCAAGGT-T-TCTGTCTTCGATTTGATTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGT-TGTCTTCAACCTGCTTC-C
* * *
18364896 TGTCAATGCAGGAAGGCAAGATATTTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
** * * * * * *
18364939 ATCACAACCGC-GGGAGGCAAGGTTTG-TGTCTTCGATCTGCTTCGC
1 -TGTCAA-TGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
18364984 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA-CTAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCT-GCTTCC
* ** * * * ** * *
18365027 -ATCACAACCGAGGGAGGCAAGGTTTG-TGTCTTTGACCTACTTCGA
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* *
18365072 TATCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * * *
18365115 -ATCATAACCGAGGGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * * *
18365160 TGACAATGCAGAAAGGCAAGATCTTTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
** * * * *
18365203 ATCCCAA--CCGAGAGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC
1 -TGTCAATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18365248 TGTCAATGTAGGAAGGCAAGATCTGTTGTCTCCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * * * ** *
18365291 -ATCACAACCGAGGGAGGCAAGGTTTG-TGTCTTCGATTTGATTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * * **
18365336 TGTCAATGCAGGAAGGCAAGATATTTTGTCTTCGACCAAC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * * * ** *
18365379 -ATCACAACCGAGGGAGGCAAGGTTTG-TGTCTTCGATTTGATTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18365424 TGTCAATGCAGGAAGGCAAGATCTTTTATCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * * * *
18365467 -ATCACAACCGAGGGAGGCAAGGTTTG-TGTCTTCGATCTGCTTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18365512 TGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * *
18365555 -ATCACA-ACCGAGAGAGGCAAGGTTTGTT-TCTTCGACCTGCTTCGC
1 TGTCA-ATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18365600 TGTCAATGCAGGAAGGCAAGATCTTTTATCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * * * ** *
18365643 -ATCACAACCGAGGGAGGCAAGGTTTG-TGTCTTCGATTTGATTCAC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * * *
18365688 TGTCAATACAGGAAGGCAAGAT-TTTTAATCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTT-GTCTTCAACCTGCTTCC
* ** * * * * * * *
18365731 -ATCACAACCGAGGGAGGCAAGGTTTG-TGTCTTCGATCTCCGTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18365776 TGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGC-T-C
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * *
18365818 TATCACA-ACCGAGAGAGGCAAGGTTTGTT-TCTTCGACCTGCTTCGC
1 TGTCA-ATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
** * * *
18365864 TGTCAATATAGGAAGGCAAGAACTTTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * *
18365907 -ATCACA-ACCGAGAGAGG-ATAGGTTTG-TGTCTTCGACCTGCTTCGC
1 TGTCA-ATGCAG-GA-AGGCA-AGATCTGTTGTCTTCAACCTGCTTC-C
* * *
18365952 TGTCACTGTAGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
** * * * * * *
18365995 ATCACAACCGAAAG-AGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC
1 -TGTCAA-TGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* *
18366040 TGTCAATTCAGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * * * *
18366083 -ATCACAACCGAGGGAGGCAAGGTTTG-TGTCTT-GACCTGCTTCAA
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
*
18366127 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * *
18366170 -ATCACA-ACCGAGAGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC
1 TGTCA-ATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* * * * *
18366215 TTTCAATGCAGGAAGGTAAGTTCTTTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * * *
18366258 -ATCACA-ACCGAGAGAGGCAAGGTTTG-TGTCTTCGACCTCCTTCGC
1 TGTCA-ATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* *
18366303 TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTT--
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * *
18366345 TATCACA-ACCGAGAGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCCC
1 TGTCA-ATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTT-CC
* *
18366391 TGTCAATGTAGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * * * * * **
18366434 -ATCATAACCGAGGGAGGGAAGGTTTG-TGTCTTCGATATGCTTCGC
1 TGTCA-ATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* *
18366479 TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* * * * * * ** *
18366522 -ATCACA-ACCGAGAGAGGTAAGGTTTG-TGTCTTTGACATGCTTCAC
1 TGTCA-ATGCAG-GA-AGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* *
18366567 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTTCA
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
** * * * * **
18366611 TCACAA-CCGAGGGAGGCAAGGTTTG-TGTCTTTGACCTGCTTCGC
1 TGTCAATGC-AGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTC-C
* *
18366655 TGTCAATGTAGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TCC
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
* ** * *
18366698 -ATCACAACCGAGGGAGGCAAAGAT-TG-TGTCTTCGACCTGCTTCGC
1 TGTCA-ATGC-AGGAAGGC-AAGATCTGTTGTCTTCAACCTGCTTC-C
*
18366743 TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCA
1 TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
18366777 CTGATCTATT
Statistics
Matches: 2578, Mismatches: 797, Indels: 622
0.64 0.20 0.16
Matches are distributed among these distances:
42 142 0.06
43 604 0.23
44 1096 0.43
45 588 0.23
46 144 0.06
47 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (44 bp):
TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCTGCTTCC
Found at i:18363196 original size:88 final size:88
Alignment explanation
Indices: 18363039--18366776 Score: 5627
Period size: 88 Copynumber: 42.5 Consensus size: 88
18363029 NNNNNNGAAA
* * *
18363039 TGCTTCGTTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* *
18363104 AGGCAAGGTTTGTGTCTTCAATC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
18363127 TGATTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
18363192 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
18363215 TGCTTCACTGTCAATGTAGGAAGGCAATATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18363280 AGGCAAGGTTTGTGTCTTTGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
18363303 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACTAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18363368 AGGCAAGGTTTGTGTCTTCAACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * *
18363391 TGCTTCGCTGTCAATGCAGGAAAGCAAGATCTGTTGTCTTCAACAAGCTCAATCACAACCAAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18363456 AGGCAAGGTTTGTGTCTTTGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
18363479 TGCTTCGCTGTCAATGCAGGAAGGCAAAATCTGTTGTCTTAAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* *
18363544 AGGCAGGGCTTT-TGTCTTCGATC
66 AGGCAAGG-TTTGTGTCTTCGACC
* * * *
18363567 TGATTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAGCCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
18363632 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
18363655 TGCTTCGCTGTCAATACAGGAAGGCAGGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18363720 AGGCAAAGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
18363743 TGCTTCGCTGTCAATGCAGGAACGCAAGATTTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18363808 AGG-ATAGGTTTGTGTATTCGACC
66 AGGCA-AGGTTTGTGTCTTCGACC
* * * * *
18363831 TGCCTCGCTATCAATGCAGGAAGGCAAGATTTGTTGTCTTCAACCAGCTCCATAACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18363896 AGGCAAGGTTTGTGTCTTCAACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * *
18363919 TGCTTCGCTGTCAATGCAGGAAAGCAAGATCTGTTGTCTTCAACAAGCTCAATCACAACCAAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* *
18363984 AGGCAAGCTTTGTGTCTTTGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
18364007 TCGCTTCACTGTCAATGTAGGAAGGCAAGATCTGTTGTCTTCAACCAACTCCATCACAACTGAGG
1 T-GCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGG
* *
18364072 GAGGCAAGTTTTGTGTCTGT-GACA
65 GAGGCAAGGTTTGTGTCT-TCGACC
* * * * *
18364096 TGCTTCCCTGACAATGCGGGAAGGCAAGATCTGTTGACTTCTACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* *
18364161 AGGCAAGGTTTCTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
18364184 TGATTCGCTGCCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCGCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18364249 AGGCAAGGTTTCTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * **
18364272 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGTTCCATCACAACCGAAAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18364337 AGGCAAGGTTTGTTTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
18364360 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTATCACAACTGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
**
18364425 AGGCAAGGTTTGTGTCTTCGATA
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
18364448 TGCTTCGCTGTCAATGCTGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
18364513 AGGCAAGGTTTGTGTCTTCGACAC
66 AGGCAAGGTTTGTGTCTTCGAC-C
* * *
18364537 -GCTTCACTGTCATTGCAGGAAGGGAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* *
18364601 AGGTAAGGTTTGTGTTTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
18364624 TGCTTCGCTGTCAATACAGGAAGGCAAGATCTGTTGTCTTCAACCAACTCCATCACAGCCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18364689 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * * *
18364712 TGCTTCGCTGTCAATGCCGGAAGGCAAGACCTTTTGTCTTTAACCAGCTCCATCACAACTGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18364777 AGGCAAGGTTTGTGTCTTTGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
18364800 CGCTTCGCTGTCAATGCAAGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* **
18364865 AGGCAAGGTTTCTGTCTTCGATT
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
18364888 TGATTCGCTGTCAATGCAGGAAGGCAAGATATTTTGTCTTCAACCAGCTCCATCACAACCGCGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18364953 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
*
18364976 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACTAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18365041 AGGCAAGGTTTGTGTCTTTGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
18365064 TACTTCGATATCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCATAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
18365129 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * *
18365152 TGCTTCGCTGACAATGCAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCCCAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
18365217 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
18365240 TGCTTCGCTGTCAATGTAGGAAGGCAAGATCTGTTGTCTCCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
**
18365305 AGGCAAGGTTTGTGTCTTCGATT
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * *
18365328 TGATTCGCTGTCAATGCAGGAAGGCAAGATATTTTGTCTTCGACCAACTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
**
18365393 AGGCAAGGTTTGTGTCTTCGATT
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
18365416 TGATTCGCTGTCAATGCAGGAAGGCAAGATCTTTTATCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18365481 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
18365504 TGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18365569 AGGCAAGGTTTGTTTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
18365592 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTATCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
**
18365657 AGGCAAGGTTTGTGTCTTCGATT
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * *
18365680 TGATTCACTGTCAATACAGGAAGGCAAGAT-TTTTAATCTTCAACCAGCTCCATCACAACCGAGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTT-GTCTTCAACCAGCTCCATCACAACCGAGG
*
18365744 GAGGCAAGGTTTGTGTCTTCGATC
65 GAGGCAAGGTTTGTGTCTTCGACC
* * * * * *
18365768 TCCGTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18365833 AGGCAAGGTTTGTTTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
** * * *
18365856 TGCTTCGCTGTCAATATAGGAAGGCAAGAACTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
18365921 AGG-ATAGGTTTGTGTCTTCGACC
66 AGGCA-AGGTTTGTGTCTTCGACC
* * **
18365944 TGCTTCGCTGTCACTGTAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAAAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
18366009 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
*
18366032 TGCTTCGCTGTCAATTCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
18366097 AGGCAAGGTTTGTGTCTT-GACC
66 AGGCAAGGTTTGTGTCTTCGACC
** *
18366119 TGCTTCAATGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
18366184 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * *
18366207 TGCTTCGCTTTCAATGCAGGAAGGTAAGTTCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
18366272 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * ** *
18366295 TCCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTTTATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
18366360 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
18366383 TGCTTCCCTGTCAATGTAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCATAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* **
18366448 AGGGAAGGTTTGTGTCTTCGATA
66 AGGCAAGGTTTGTGTCTTCGACC
* *
18366471 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* * *
18366536 AGGTAAGGTTTGTGTCTTTGACA
66 AGGCAAGGTTTGTGTCTTCGACC
* *
18366559 TGCTTCACTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTTCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
*
18366624 AGGCAAGGTTTGTGTCTTTGACC
66 AGGCAAGGTTTGTGTCTTCGACC
*
18366647 TGCTTCGCTGTCAATGTAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
* *
18366712 AGGCAAAGATTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
*
18366735 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCA
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCA
18366777 CTGATCTATT
Statistics
Matches: 3322, Mismatches: 314, Indels: 28
0.91 0.09 0.01
Matches are distributed among these distances:
87 94 0.03
88 3143 0.95
89 84 0.03
90 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (88 bp):
TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
AGGCAAGGTTTGTGTCTTCGACC
Found at i:18367991 original size:8 final size:8
Alignment explanation
Indices: 18367980--18368018 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 8
18367970 CTTTTTCATT
18367980 TTTTTTCA
1 TTTTTTCA
18367988 -TTTTTCA
1 TTTTTTCA
18367995 TTTTTTCA
1 TTTTTTCA
18368003 TTTTTTTCA
1 -TTTTTTCA
18368012 TCTTTTT
1 T-TTTTT
18368019 TTTACTCGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.25
8 8 0.29
9 13 0.46
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTTCA
Found at i:18367991 original size:9 final size:9
Alignment explanation
Indices: 18367971--18368019 Score: 59
Period size: 10 Copynumber: 5.6 Consensus size: 9
18367961 CCACTTTTAC
18367971 TTTTTCATTT
1 TTTTTCA-TT
18367981 TTTTTCA--
1 TTTTTCATT
18367988 TTTTTCA-T
1 TTTTTCATT
18367996 TTTTTCATT
1 TTTTTCATT
18368005 TTTTTCATCT
1 TTTTTCAT-T
18368015 TTTTT
1 TTTTT
18368020 TTACTCGAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.19
8 7 0.19
9 9 0.25
10 13 0.36
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTCATT
Found at i:18368008 original size:17 final size:17
Alignment explanation
Indices: 18367971--18368019 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
18367961 CCACTTTTAC
18367971 TTTTTCATTTTTTTTCA-
1 TTTTTCA-TTTTTTTCAT
18367988 TTTTTCA-TTTTTTCATT
1 TTTTTCATTTTTTTCA-T
18368005 TTTTTCATCTTTTTT
1 TTTTTCAT-TTTTTT
18368020 TTACTCGAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 8 0.29
17 14 0.50
19 6 0.21
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTCATTTTTTTCAT
Found at i:18368855 original size:16 final size:16
Alignment explanation
Indices: 18368834--18368886 Score: 79
Period size: 16 Copynumber: 3.2 Consensus size: 16
18368824 CTATTTTGAC
18368834 TTTGATTTTTTTGATT
1 TTTGATTTTTTTGATT
18368850 TTTGATTTTTTTGATTTT
1 TTTGATTTTTTTGA--TT
*
18368868 TTTGATTTTTTTTATT
1 TTTGATTTTTTTGATT
18368884 TTT
1 TTT
18368887 TTTTGAGTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
16 19 0.56
18 15 0.44
ACGTcount: A:0.11, C:0.00, G:0.09, T:0.79
Consensus pattern (16 bp):
TTTGATTTTTTTGATT
Found at i:18368890 original size:10 final size:9
Alignment explanation
Indices: 18368834--18368888 Score: 87
Period size: 9 Copynumber: 6.3 Consensus size: 9
18368824 CTATTTTGAC
18368834 TTTGATTTT
1 TTTGATTTT
18368843 TTTGA--TT
1 TTTGATTTT
18368850 TTTGATTTT
1 TTTGATTTT
18368859 TTTGATTTT
1 TTTGATTTT
18368868 TTTGATTTT
1 TTTGATTTT
*
18368877 TTTTATTTT
1 TTTGATTTT
18368886 TTT
1 TTT
18368889 TTGAGTCTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
7 7 0.16
9 36 0.84
ACGTcount: A:0.11, C:0.00, G:0.09, T:0.80
Consensus pattern (9 bp):
TTTGATTTT
Found at i:18370940 original size:19 final size:18
Alignment explanation
Indices: 18370918--18370960 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
18370908 GTGAAATTTG
18370918 ATGCA-TGCAATGAAATGCA
1 ATGCAGTGC-ATGAAATG-A
18370937 ATGCAGGTGCATGAAATGA
1 ATGCA-GTGCATGAAATGA
18370956 ATGCA
1 ATGCA
18370961 AAAAGAGACG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
20 8 0.36
21 3 0.14
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.21
Consensus pattern (18 bp):
ATGCAGTGCATGAAATGA
Found at i:18372823 original size:23 final size:22
Alignment explanation
Indices: 18372797--18372853 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 22
18372787 AGTAAAAATG
18372797 AATGCAAAATAATAAATGATGAC
1 AATGCAAAATAATAAATGAT-AC
*
18372820 AATG-TAAAT-A-AAATGATAC
1 AATGCAAAATAATAAATGATAC
*
18372839 AA-GCAAAACAATAAA
1 AATGCAAAATAATAAA
18372854 CAATAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
18 1 0.04
19 7 0.25
20 8 0.29
21 4 0.14
22 4 0.14
23 4 0.14
ACGTcount: A:0.61, C:0.09, G:0.11, T:0.19
Consensus pattern (22 bp):
AATGCAAAATAATAAATGATAC
Found at i:18373478 original size:18 final size:18
Alignment explanation
Indices: 18373378--18373478 Score: 73
Period size: 18 Copynumber: 5.7 Consensus size: 18
18373368 CAACAACAAC
*
18373378 AATAATAATAATAATAAT
1 AATAATAATATTAATAAT
* *
18373396 AATAATAAAAGTAATAA-
1 AATAATAATATTAATAAT
* **
18373413 AGATAATAATACT-ATAGC
1 A-ATAATAATATTAATAAT
* * *
18373431 AATGATGACATTAATAAT
1 AATAATAATATTAATAAT
*
18373449 AATAATACTATTAATAAT
1 AATAATAATATTAATAAT
18373467 -ATAAATAATATT
1 AAT-AATAATATT
18373479 GCTGCTAATA
Statistics
Matches: 63, Mismatches: 16, Indels: 8
0.72 0.18 0.09
Matches are distributed among these distances:
17 13 0.21
18 50 0.79
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (18 bp):
AATAATAATATTAATAAT
Found at i:18373492 original size:3 final size:3
Alignment explanation
Indices: 18373378--18373476 Score: 62
Period size: 3 Copynumber: 33.3 Consensus size: 3
18373368 CAACAACAAC
18373378 AAT AAT AAT AAT AAT AAT AAT AAT AA- AAGT AAT AA- AGAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT A-AT AAT AAT
* ** * * * * * *
18373423 ACT -AT AGC AAT GAT GAC ATT AAT AAT AAT AAT ACT ATT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
18373469 AAAT AAT A
1 -AAT AAT A
18373477 TTGCTGCTAA
Statistics
Matches: 74, Mismatches: 15, Indels: 14
0.72 0.15 0.14
Matches are distributed among these distances:
2 6 0.08
3 63 0.85
4 5 0.07
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:18374196 original size:6 final size:6
Alignment explanation
Indices: 18374185--18374234 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
18374175 TTGTTATTTC
* *
18374185 AAAATA AAAAT- AAAATA AAAATA AAACA-A AAAATA TAAAT- GAAATA
1 AAAATA AAAATA AAAATA AAAATA AAA-ATA AAAATA AAAATA AAAATA
18374231 AAAA
1 AAAA
18374235 AAGACCTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
5 10 0.27
6 26 0.70
7 1 0.03
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:18374201 original size:11 final size:11
Alignment explanation
Indices: 18374185--18374216 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
18374175 TTGTTATTTC
18374185 AAAATAAAAAT
1 AAAATAAAAAT
18374196 AAAATAAAAAT
1 AAAATAAAAAT
*
18374207 AAAACAAAAA
1 AAAATAAAAA
18374217 ATATAAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.12
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:18374229 original size:23 final size:23
Alignment explanation
Indices: 18374190--18374233 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
18374180 ATTTCAAAAT
18374190 AAAAATAAAATAAAAATAAAACA
1 AAAAATAAAATAAAAATAAAACA
*
18374213 AAAAATATAAAT-GAAATAAAA
1 AAAAATA-AAATAAAAATAAAA
18374234 AAAGACCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (23 bp):
AAAAATAAAATAAAAATAAAACA
Found at i:18374600 original size:27 final size:28
Alignment explanation
Indices: 18374550--18374606 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
18374540 TAGTTTTGGG
*
18374550 TTTGTTGGGTATTTGGGCTTGGTT-TAA
1 TTTGTTGGGTACTTGGGCTTGGTTGTAA
*
18374577 TTTGTTGGGT-CTTGGGTTTGGGTTGTAA
1 TTTGTTGGGTACTTGGGCTT-GGTTGTAA
18374605 TT
1 TT
18374607 GGGTTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 7 0.27
27 14 0.54
28 5 0.19
ACGTcount: A:0.09, C:0.04, G:0.35, T:0.53
Consensus pattern (28 bp):
TTTGTTGGGTACTTGGGCTTGGTTGTAA
Found at i:18374999 original size:46 final size:46
Alignment explanation
Indices: 18374646--18374979 Score: 515
Period size: 46 Copynumber: 7.3 Consensus size: 46
18374636 TGGGCTGTAC
* *
18374646 GAGGGGATCGAAGATAGCAGATCTTATCTTCCTGTATTTGGCAGCG
1 GAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
*
18374692 GAGGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
1 GAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
* * * ** *
18374738 GAGAAGATCGAAGATAGCAGAGCTTATCTTTATGTATTTGGGAGCG
1 GAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
* *
18374784 GAGGAGATCGAGGATAGCAGATCTTGTCTTCCTGTAATTGGCAGCG
1 GAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
*
18374830 GAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAACG
1 GAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
* * *
18374876 GAGGGGATCGAAGGTAGCAGATCTTGTCTTCCTGTATTTGGCAGTG
1 GAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
18374922 GAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
1 GAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
* *
18374968 AAGTAGATCGAA
1 GAGGAGATCGAA
18374980 TATGGTGAAT
Statistics
Matches: 260, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 260 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (46 bp):
GAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
Found at i:18375446 original size:26 final size:29
Alignment explanation
Indices: 18375403--18375459 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 29
18375393 CATAAAACCC
18375403 AATTACAACCCAAACCC-AAGACCCAACA
1 AATTACAACCCAAACCCAAAGACCCAACA
* *
18375431 AATTA-AA-CCAAGCCCAAATACCCAACA
1 AATTACAACCCAAACCCAAAGACCCAACA
18375458 AA
1 AA
18375460 CCCAAAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 7 0.27
27 14 0.54
28 5 0.19
ACGTcount: A:0.53, C:0.35, G:0.04, T:0.09
Consensus pattern (29 bp):
AATTACAACCCAAACCCAAAGACCCAACA
Found at i:18375805 original size:11 final size:11
Alignment explanation
Indices: 18375777--18375823 Score: 60
Period size: 11 Copynumber: 4.3 Consensus size: 11
18375767 AAAGGTCTTT
*
18375777 TTTTA-TTTCA
1 TTTTATTTTTA
*
18375787 TTTATATTTTTG
1 TTT-TATTTTTA
18375799 TTTTATTTTTA
1 TTTTATTTTTA
18375810 TTTTATTTTTA
1 TTTTATTTTTA
18375821 TTT
1 TTT
18375824 CGAAATAACA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
10 3 0.09
11 23 0.72
12 6 0.19
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:18375806 original size:17 final size:16
Alignment explanation
Indices: 18375775--18375823 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 16
18375765 TAAAAGGTCT
18375775 TTTTTTATTTCATTTATA
1 TTTTTT-TTT-ATTTATA
*
18375793 TTTTTGTTTTATTTTTA
1 TTTTT-TTTTATTTATA
18375810 TTTTATTTTTATTT
1 TTTT-TTTTTATTT
18375824 CGAAATAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 18 0.64
18 9 0.32
19 1 0.04
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTTTTTTATTTATA
Found at i:18376531 original size:24 final size:24
Alignment explanation
Indices: 18376504--18376556 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
18376494 TATTTTATCG
* *
18376504 TTATTTTTATTATTAGTAGCAATA
1 TTATTTATATTATTAATAGCAATA
* *
18376528 TTATTTATATTATTAATAGTATTA
1 TTATTTATATTATTAATAGCAATA
18376552 TTATT
1 TTATT
18376557 AATGTCATCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (24 bp):
TTATTTATATTATTAATAGCAATA
Found at i:18376555 original size:15 final size:15
Alignment explanation
Indices: 18376535--18376657 Score: 71
Period size: 15 Copynumber: 8.5 Consensus size: 15
18376525 ATATTATTTA
18376535 TATTATTAATAGTAT
1 TATTATTAATAGTAT
18376550 TATTATTAAT-GTCAT
1 TATTATTAATAGT-AT
* **
18376565 CATTGCT-ATAGTAT
1 TATTATTAATAGTAT
18376579 TATTATCT--T--TAT
1 TATTAT-TAATAGTAT
* *
18376591 TACTT-TTACTATTAT
1 TA-TTATTAATAGTAT
* *
18376606 TATTATTATTATTAT
1 TATTATTAATAGTAT
* *
18376621 TATTATTATTATTAT
1 TATTATTAATAGTAT
* *
18376636 TATTATTATTACTAT
1 TATTATTAATAGTAT
18376651 TATTATT
1 TATTATT
18376658 GTTGCATTTA
Statistics
Matches: 91, Mismatches: 8, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
11 1 0.01
12 6 0.07
13 3 0.03
14 12 0.13
15 69 0.76
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (15 bp):
TATTATTAATAGTAT
Found at i:18376672 original size:3 final size:3
Alignment explanation
Indices: 18376576--18376657 Score: 114
Period size: 3 Copynumber: 27.3 Consensus size: 3
18376566 ATTGCTATAG
*
18376576 TAT TAT TAT CT-T TAT TACT T-T TAC TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
18376621 TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
18376658 GTTGCATTTA
Statistics
Matches: 71, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
2 3 0.04
3 65 0.92
4 3 0.04
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:18377170 original size:15 final size:15
Alignment explanation
Indices: 18377147--18377182 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
18377137 GTTTTCTTAC
*
18377147 TTTAGTTTCTTATTA
1 TTTATTTTCTTATTA
*
18377162 TTTATTTTCTTATTG
1 TTTATTTTCTTATTA
18377177 TTTATT
1 TTTATT
18377183 GTTTTGCTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.72
Consensus pattern (15 bp):
TTTATTTTCTTATTA
Found at i:18378920 original size:17 final size:17
Alignment explanation
Indices: 18378895--18378929 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
18378885 CTATTCTTTC
18378895 CATAACTTAACCCTAGT
1 CATAACTTAACCCTAGT
*
18378912 CATACCTTAACCCTAGT
1 CATAACTTAACCCTAGT
18378929 C
1 C
18378930 CTATTACAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.34, G:0.06, T:0.29
Consensus pattern (17 bp):
CATAACTTAACCCTAGT
Found at i:18386056 original size:22 final size:23
Alignment explanation
Indices: 18386031--18386101 Score: 67
Period size: 22 Copynumber: 3.1 Consensus size: 23
18386021 TATATCGATG
*
18386031 TTATTTTAATTTAAAATAATAT-
1 TTATTTTAATTAAAAATAATATA
* *
18386053 TTATATTTGA-TAAAAATTATATA
1 TTAT-TTTAATTAAAAATAATATA
*
18386076 TT-TTTTACTTAAAAATAATAATA
1 TTATTTTAATTAAAAATAAT-ATA
18386099 TTA
1 TTA
18386102 ACTGTTATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
21 3 0.08
22 24 0.63
23 11 0.29
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (23 bp):
TTATTTTAATTAAAAATAATATA
Found at i:18386357 original size:40 final size:40
Alignment explanation
Indices: 18386302--18386379 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
18386292 TGGCATCTAG
18386302 TTGCCTTTAAATAGCAAATAATGAATGCAATCTAGAGTGT
1 TTGCCTTTAAATAGCAAATAATGAATGCAATCTAGAGTGT
18386342 TTGCCTTTAAATAGCAAATAATGAATGCAATCTAGAGT
1 TTGCCTTTAAATAGCAAATAATGAATGCAATCTAGAGT
18386380 TTTTTCTTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (40 bp):
TTGCCTTTAAATAGCAAATAATGAATGCAATCTAGAGTGT
Found at i:18390626 original size:28 final size:28
Alignment explanation
Indices: 18390594--18390652 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
18390584 TGTGAGATTG
18390594 ATGCATAAACATGTAAATAATGTGCTAA
1 ATGCATAAACATGTAAATAATGTGCTAA
18390622 ATGCATAAACATGTAAATAATGTGCTAA
1 ATGCATAAACATGTAAATAATGTGCTAA
18390650 ATG
1 ATG
18390653 ATTTTATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (28 bp):
ATGCATAAACATGTAAATAATGTGCTAA
Found at i:18399462 original size:20 final size:20
Alignment explanation
Indices: 18399437--18399474 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
18399427 ACATTCAAAA
18399437 TACCATAATCACAA-CCAAGT
1 TACCATAA-CACAAGCCAAGT
18399457 TACCATAACACAAGCCAA
1 TACCATAACACAAGCCAA
18399475 ACCATATGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.47, C:0.32, G:0.05, T:0.16
Consensus pattern (20 bp):
TACCATAACACAAGCCAAGT
Found at i:18400638 original size:24 final size:24
Alignment explanation
Indices: 18400582--18400701 Score: 136
Period size: 25 Copynumber: 4.9 Consensus size: 24
18400572 ACAAGCTGTG
* *
18400582 AATCGATATGCTCTCACGAGCTGTA
1 AATCGGTAAGCTCTCACGAGCTG-A
*
18400607 AATCGGTAAGCTCTCATGAGCTGA
1 AATCGGTAAGCTCTCACGAGCTGA
*
18400631 AATCGGTAAGCTCAT-ACAAGCTGA
1 AATCGGTAAGCTC-TCACGAGCTGA
* *
18400655 GAATCGGTAAGCTCTCACAAGCTAA
1 -AATCGGTAAGCTCTCACGAGCTGA
18400680 AATCGGTAAGCTCAT-ACGAGCT
1 AATCGGTAAGCTC-TCACGAGCT
18400702 AAGAATTGGT
Statistics
Matches: 84, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
24 41 0.49
25 43 0.51
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (24 bp):
AATCGGTAAGCTCTCACGAGCTGA
Found at i:18400653 original size:49 final size:49
Alignment explanation
Indices: 18400607--18400713 Score: 160
Period size: 49 Copynumber: 2.2 Consensus size: 49
18400597 ACGAGCTGTA
** *
18400607 AATCGGTAAGCTCTCATGAGCTGAAATCGGTAAGCTCATACAAGCTGAG
1 AATCGGTAAGCTCTCACAAGCTAAAATCGGTAAGCTCATACAAGCTGAG
* *
18400656 AATCGGTAAGCTCTCACAAGCTAAAATCGGTAAGCTCATACGAGCTAAG
1 AATCGGTAAGCTCTCACAAGCTAAAATCGGTAAGCTCATACAAGCTGAG
*
18400705 AATTGGTAA
1 AATCGGTAA
18400714 TCCCTAATGA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (49 bp):
AATCGGTAAGCTCTCACAAGCTAAAATCGGTAAGCTCATACAAGCTGAG
Found at i:18400713 original size:74 final size:74
Alignment explanation
Indices: 18400566--18400713 Score: 192
Period size: 74 Copynumber: 2.0 Consensus size: 74
18400556 CTACATGTAT
* * * * * *
18400566 GCTCATACAAGCTGTGAATCGATATGCTCTCACGAGCTGTAAATCGGTAAGCTCTCATGAGCTGA
1 GCTCATACAAGCTGAGAATCGATAAGCTCTCACAAGCTGAAAATCGGTAAGCTCTCACGAGCTAA
18400631 AATCGGTAA
66 AATCGGTAA
*
18400640 GCTCATACAAGCTGAGAATCGGTAAGCTCTCACAAGCT-AAAATCGGTAAGCTCAT-ACGAGCTA
1 GCTCATACAAGCTGAGAATCGATAAGCTCTCACAAGCTGAAAATCGGTAAGCTC-TCACGAGCTA
*
18400703 AGAATTGGTAA
65 A-AATCGGTAA
18400714 TCCCTAATGA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
73 21 0.33
74 43 0.67
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (74 bp):
GCTCATACAAGCTGAGAATCGATAAGCTCTCACAAGCTGAAAATCGGTAAGCTCTCACGAGCTAA
AATCGGTAA
Found at i:18402245 original size:24 final size:24
Alignment explanation
Indices: 18402213--18402262 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
18402203 CTTTTAACCA
18402213 TTCTATGCTTTTATCACACTTGTT
1 TTCTATGCTTTTATCACACTTGTT
*
18402237 TTCTATGCTTTTATCACAGTTGTT
1 TTCTATGCTTTTATCACACTTGTT
18402261 TT
1 TT
18402263 ACTTTTAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.18, G:0.10, T:0.56
Consensus pattern (24 bp):
TTCTATGCTTTTATCACACTTGTT
Found at i:18405015 original size:22 final size:22
Alignment explanation
Indices: 18404934--18405018 Score: 82
Period size: 22 Copynumber: 3.9 Consensus size: 22
18404924 CGCACCAGTA
* *
18404934 TATGAGAGCCCTTTATAGGACA
1 TATGAGAGCCCTTTATGGGACG
* *
18404956 TATGAGAGCCCTTTAT-GAAGG
1 TATGAGAGCCCTTTATGGGACG
* ** *
18404977 TATAAGAATCATTTATGGGACG
1 TATGAGAGCCCTTTATGGGACG
*
18404999 TATGAGAGCCCTATATGGGA
1 TATGAGAGCCCTTTATGGGA
18405019 TTTTCGAGCA
Statistics
Matches: 48, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
21 14 0.29
22 34 0.71
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (22 bp):
TATGAGAGCCCTTTATGGGACG
Found at i:18408773 original size:12 final size:12
Alignment explanation
Indices: 18408756--18408786 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
18408746 GGTGGCACGA
18408756 CCGTGTCCTAGC
1 CCGTGTCCTAGC
18408768 CCGTGTCCTAGC
1 CCGTGTCCTAGC
*
18408780 CCTTGTC
1 CCGTGTC
18408787 TGTGCCCGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.42, G:0.23, T:0.29
Consensus pattern (12 bp):
CCGTGTCCTAGC
Found at i:18415305 original size:100 final size:101
Alignment explanation
Indices: 18415150--18415345 Score: 324
Period size: 100 Copynumber: 2.0 Consensus size: 101
18415140 TTAAGGGTTG
18415150 TAAGAGGGAAATTATAAACAAACAGTTAGACTAGAGATAGGAATATGAGAGACTAAGTAATTGGT
1 TAAGAGGGAAATTATAAACAAACAGTTAGACTAGAGATAGGAATATGAGAGACTAAGTAATTGGT
*
18415215 GTCTTAAGACCTTAGTTGTTAAAAA-TATTAACAAC
66 GGCTTAAGACCTTAGTTGTTAAAAATTATTAACAAC
* * * *
18415250 TAAGAGGGCAATTGTAAACAAATAGTTAGACTAGAGATAGGAATCT-AGGAGACTAAGTAATTGG
1 TAAGAGGGAAATTATAAACAAACAGTTAGACTAGAGATAGGAATATGA-GAGACTAAGTAATTGG
18415314 TGGCTTAAGACCTTAGTTGTTAAAAATTATTA
65 TGGCTTAAGACCTTAGTTGTTAAAAATTATTA
18415346 TTATTTATTT
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
99 1 0.01
100 83 0.93
101 5 0.06
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (101 bp):
TAAGAGGGAAATTATAAACAAACAGTTAGACTAGAGATAGGAATATGAGAGACTAAGTAATTGGT
GGCTTAAGACCTTAGTTGTTAAAAATTATTAACAAC
Found at i:18422240 original size:30 final size:29
Alignment explanation
Indices: 18422179--18422273 Score: 86
Period size: 30 Copynumber: 3.2 Consensus size: 29
18422169 AAAATTAGTC
** * * *
18422179 TGGGCCTGAGCCTTATACAGTAGCAGTGTG
1 TGGGCCT-AGCCCAATATAGTAACAGAGTG
18422209 TGGGCCATAGCCCAATATAGTAACAGAGTG
1 TGGGCC-TAGCCCAATATAGTAACAGAGTG
* *
18422239 TGGGCCTAAGTCCAATATAGTATC--AGTG
1 TGGGCCT-AGCCCAATATAGTAACAGAGTG
18422267 TGGGCCT
1 TGGGCCT
18422274 TATCCCAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
28 11 0.20
29 1 0.02
30 43 0.77
31 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGGCCTAGCCCAATATAGTAACAGAGTG
Found at i:18422281 original size:28 final size:29
Alignment explanation
Indices: 18422206--18422281 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 29
18422196 CAGTAGCAGT
* *
18422206 GTGTGGGCCATAGCCCAATATAGTAACAGA
1 GTGTGGGCCTTATCCCAATATAGTAACA-A
* *
18422236 GTGTGGGCCTAAGT-CCAATATAGTATC-A
1 GTGTGGGCCTTA-TCCCAATATAGTAACAA
18422264 GTGTGGGCCTTATCCCAA
1 GTGTGGGCCTTATCCCAA
18422282 AACAGTAATC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 1 0.03
28 16 0.41
30 22 0.56
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (29 bp):
GTGTGGGCCTTATCCCAATATAGTAACAA
Found at i:18422444 original size:26 final size:27
Alignment explanation
Indices: 18422403--18422477 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 27
18422393 ACCAATATCG
* *
18422403 CAGCAAAGCTGGCAGTAACAGTAAT-G
1 CAGCAAAGCTGCCAGTAACAGTAATCA
* * *
18422429 TAGCAGAGCTGCCAGTATCAGT-ATCA
1 CAGCAAAGCTGCCAGTAACAGTAATCA
*
18422455 CAACAAAGCTGCCAGTAACAGTA
1 CAGCAAAGCTGCCAGTAACAGTA
18422478 TTTATGGCAA
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
25 2 0.05
26 36 0.95
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CAGCAAAGCTGCCAGTAACAGTAATCA
Found at i:18422699 original size:27 final size:27
Alignment explanation
Indices: 18422669--18422842 Score: 104
Period size: 27 Copynumber: 6.5 Consensus size: 27
18422659 GGCATAACGA
*
18422669 TCATTTTACCCTAT-GGGGGTATTTCGG
1 TCATTTTACCCT-TCGGGGGTATTTAGG
*
18422696 TCATTTTCCCCTTCGGGGGTATTTAGG
1 TCATTTTACCCTTCGGGGGTATTTAGG
* * *
18422723 TAATTTTACCCTTCGAGGGAATTTTA-G
1 TCATTTTACCCTTCGGGGGTA-TTTAGG
* * ** *
18422750 TAATTTAACCC-TCAAGGGTATTTCA-A
1 TCATTTTACCCTTCGGGGGTATTT-AGG
* * * * * *
18422776 TAATTTTACTCTTCGAGAGTATTTCGA
1 TCATTTTACCCTTCGGGGGTATTTAGG
* ** *
18422803 TAATTTTACCCTTCAAGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTAGG
*
18422830 TAATTTTACCCTT
1 TCATTTTACCCTT
18422843 TGACGATATT
Statistics
Matches: 123, Mismatches: 19, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.02
26 18 0.15
27 98 0.80
28 4 0.03
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.41
Consensus pattern (27 bp):
TCATTTTACCCTTCGGGGGTATTTAGG
Found at i:18422837 original size:54 final size:55
Alignment explanation
Indices: 18422698--18422890 Score: 225
Period size: 54 Copynumber: 3.6 Consensus size: 55
18422688 TATTTCGGTC
* ** * * * * *
18422698 ATTTTCCCCTTCGGGGGTATTTAGGTAATTTTACCCTTCGAGGGAATTT-TAGTA
1 ATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTCGAGAGTATTTCGACTA
* ** *
18422752 ATTTAACCC-TCAAGGGTATTTCAATAATTTTACTCTTCGAGAGTATTTCGA-TA
1 ATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTCGAGAGTATTTCGACTA
*
18422805 ATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTTGACGA-TATTTC-ACTA
1 ATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTCGA-GAGTATTTCGACTA
18422859 ATTTTACCCTTCAAGGGTATTTCGGTAATTTT
1 ATTTTACCCTTCAAGGGTATTTCGGTAATTTT
18422891 CCCATGAATC
Statistics
Matches: 119, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
53 42 0.35
54 75 0.63
55 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42
Consensus pattern (55 bp):
ATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTCGAGAGTATTTCGACTA
Found at i:18422852 original size:27 final size:27
Alignment explanation
Indices: 18422688--18422890 Score: 160
Period size: 27 Copynumber: 7.6 Consensus size: 27
18422678 CCTATGGGGG
* * ** *
18422688 TATTTCGGTCATTTTCCCCTTCGGGGG
1 TATTTCGGTAATTTTACCCTTCAAGGA
* *
18422715 TATTTAGGTAATTTTACCCTTCGAGGGA
1 TATTTCGGTAATTTTACCCTTC-AAGGA
** * *
18422743 -ATTTTAGTAATTTAACCC-TCAAGGG
1 TATTTCGGTAATTTTACCCTTCAAGGA
** * *
18422768 TATTTCAATAATTTTACTCTTCGA-GA
1 TATTTCGGTAATTTTACCCTTCAAGGA
* *
18422794 GTATTTCGATAATTTTACCCTTCAAGGG
1 -TATTTCGGTAATTTTACCCTTCAAGGA
** *
18422822 TATTTCGGTAATTTTACCCTTTGACGA
1 TATTTCGGTAATTTTACCCTTCAAGGA
** *
18422849 TATTTCACTAATTTTACCCTTCAAGGG
1 TATTTCGGTAATTTTACCCTTCAAGGA
18422876 TATTTCGGTAATTTT
1 TATTTCGGTAATTTT
18422891 CCCATGAATC
Statistics
Matches: 138, Mismatches: 33, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
25 3 0.02
26 17 0.12
27 114 0.83
28 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42
Consensus pattern (27 bp):
TATTTCGGTAATTTTACCCTTCAAGGA
Found at i:18422861 original size:107 final size:108
Alignment explanation
Indices: 18422687--18422890 Score: 268
Period size: 107 Copynumber: 1.9 Consensus size: 108
18422677 CCCTATGGGG
* * * ** * * *
18422687 GTATTTCGGTCATTTTCCCCTTCGGGGGTATTTAGGTAATTTTACCCTTCGAGGGAATTTTAGTA
1 GTATTTCGATAATTTTACCCTTCAAGGGTATTTAGGTAATTTTACCCTTCGAGCGAATTTCACTA
18422752 ATTTAACCC-TCAAGGGTATTTCAATAATTTTACTCTTCGAGA
66 ATTTAACCCTTCAAGGGTATTTCAATAATTTTACTCTTCGAGA
* *
18422794 GTATTTCGATAATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTTGA-CGATATTTCACT
1 GTATTTCGATAATTTTACCCTTCAAGGGTATTTAGGTAATTTTACCCTTCGAGCGA-ATTTCACT
* **
18422858 AATTTTACCCTTCAAGGGTATTTCGGTAATTTT
65 AATTTAACCCTTCAAGGGTATTTCAATAATTTT
18422891 CCCATGAATC
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
106 2 0.02
107 60 0.73
108 20 0.24
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.42
Consensus pattern (108 bp):
GTATTTCGATAATTTTACCCTTCAAGGGTATTTAGGTAATTTTACCCTTCGAGCGAATTTCACTA
ATTTAACCCTTCAAGGGTATTTCAATAATTTTACTCTTCGAGA
Found at i:18429286 original size:30 final size:28
Alignment explanation
Indices: 18429252--18429317 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
18429242 GTGCGAGCCA
*
18429252 TAGCCTAATACAATAACAGAATGTGGGCCT
1 TAGCCCAATACAATAACAG--TGTGGGCCT
* *
18429282 TAGCCCAATACAGTATCAGTGTGGGCCT
1 TAGCCCAATACAATAACAGTGTGGGCCT
*
18429310 CAGCCCAA
1 TAGCCCAA
18429318 AACAGTAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 16 0.50
30 16 0.50
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (28 bp):
TAGCCCAATACAATAACAGTGTGGGCCT
Found at i:18429314 original size:28 final size:29
Alignment explanation
Indices: 18429273--18429330 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
18429263 AATAACAGAA
* *
18429273 TGTGGGCCTTAGCCCAATACAGT-ATCAG
1 TGTGGGCCTCAGCCCAAAACAGTAATCAG
18429301 TGTGGGCCTCAGCCCAAAACAGTAATCAG
1 TGTGGGCCTCAGCCCAAAACAGTAATCAG
18429330 T
1 T
18429331 ACAAATGCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 21 0.78
29 6 0.22
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (29 bp):
TGTGGGCCTCAGCCCAAAACAGTAATCAG
Found at i:18429526 original size:26 final size:26
Alignment explanation
Indices: 18429442--18429533 Score: 94
Period size: 26 Copynumber: 3.5 Consensus size: 26
18429432 AATATCGCAG
** *
18429442 CAAAGCTGCCAAAATTAGTAACACAA
1 CAAAGCTGCCAGTATCAGTAACACAA
* *
18429468 CAAAGCTGCCAGTAACAGTAACAAAA
1 CAAAGCTGCCAGTATCAGTAACACAA
* * * *
18429494 CAGAGCTGCCAGTATCAGTATCGCAG
1 CAAAGCTGCCAGTATCAGTAACACAA
*
18429520 CAAAGCTACCAGTA
1 CAAAGCTGCCAGTA
18429534 ATAGTATTTG
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.15
Consensus pattern (26 bp):
CAAAGCTGCCAGTATCAGTAACACAA
Found at i:18429761 original size:27 final size:28
Alignment explanation
Indices: 18429731--18429823 Score: 97
Period size: 27 Copynumber: 3.5 Consensus size: 28
18429721 GGGGCATAGT
*
18429731 AGTCATTTTACCCCAT-GGGGGTATTTC
1 AGTCATTTTACCCCTTCGGGGGTATTTC
* *
18429758 AGTCA-TTT-CCCCTTCAGGGGTGTTTC
1 AGTCATTTTACCCCTTCGGGGGTATTTC
*
18429784 AGT-ACTTTTA-CCCTTCGAGGGTATTTC
1 AGTCA-TTTTACCCCTTCGGGGGTATTTC
*
18429811 AGTAATTTTACCC
1 AGTCATTTTACCC
18429824 TTCAACGGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
25 6 0.11
26 15 0.28
27 30 0.56
28 3 0.06
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.39
Consensus pattern (28 bp):
AGTCATTTTACCCCTTCGGGGGTATTTC
Found at i:18429824 original size:27 final size:27
Alignment explanation
Indices: 18429749--18429890 Score: 155
Period size: 27 Copynumber: 5.3 Consensus size: 27
18429739 TACCCCATGG
* *
18429749 GGGTATTTCAGTCA-TTTCCCCTTC-A
1 GGGTATTTCAGTAATTTTACCCTTCGA
* *
18429774 GGGGTGTTTCAGTACTTTTACCCTTCGA
1 -GGGTATTTCAGTAATTTTACCCTTCGA
*
18429802 GGGTATTTCAGTAATTTTACCCTTCAA
1 GGGTATTTCAGTAATTTTACCCTTCGA
* *
18429829 CGGTATTT-TGATAATTTTACCCTTCGA
1 GGGTATTTCAG-TAATTTTACCCTTCGA
* * *
18429856 CGGTATTTCGGTAATTTTACCCTCCGA
1 GGGTATTTCAGTAATTTTACCCTTCGA
18429883 GGGTATTT
1 GGGTATTT
18429891 TGATAATTTG
Statistics
Matches: 99, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
26 12 0.12
27 85 0.86
28 2 0.02
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACCCTTCGA
Found at i:18429849 original size:54 final size:54
Alignment explanation
Indices: 18429789--18429899 Score: 177
Period size: 54 Copynumber: 2.1 Consensus size: 54
18429779 GTTTCAGTAC
* *
18429789 TTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTCAACGGTATTTTGATAA
1 TTTTACCCTTCGACGGTATTTCAGTAATTTTACCCTCCAACGGTATTTTGATAA
* * *
18429843 TTTTACCCTTCGACGGTATTTCGGTAATTTTACCCTCCGAGGGTATTTTGATAA
1 TTTTACCCTTCGACGGTATTTCAGTAATTTTACCCTCCAACGGTATTTTGATAA
18429897 TTT
1 TTT
18429900 GCCCACGAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (54 bp):
TTTTACCCTTCGACGGTATTTCAGTAATTTTACCCTCCAACGGTATTTTGATAA
Found at i:18443989 original size:16 final size:16
Alignment explanation
Indices: 18443950--18443981 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
18443940 TAACAAATGT
18443950 TACCTAAAAATAAAAA
1 TACCTAAAAATAAAAA
18443966 TACCTAAAAATAAAAA
1 TACCTAAAAATAAAAA
18443982 GTCCTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (16 bp):
TACCTAAAAATAAAAA
Found at i:18445362 original size:33 final size:33
Alignment explanation
Indices: 18445332--18445461 Score: 147
Period size: 33 Copynumber: 3.9 Consensus size: 33
18445322 CTGAGCCCTT
* *
18445332 AACAGTAACAATATAGTGTGGGCCTTAGCCCAA
1 AACAATAACAGTATAGTGTGGGCCTTAGCCCAA
* * * **
18445365 AACAATAACGGTGGA-AAT-TGGGCCTGAGCCCTT
1 AACAATAACAGT--ATAGTGTGGGCCTTAGCCCAA
*
18445398 AACAGTAACAGTATAGTGTGGGCCTTAGCCCAA
1 AACAATAACAGTATAGTGTGGGCCTTAGCCCAA
*
18445431 AACAATAGCAGTATAGTGTGGGCCTTAGCCC
1 AACAATAACAGTATAGTGTGGGCCTTAGCCC
18445462 GTATCAAATG
Statistics
Matches: 78, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
31 1 0.01
32 2 0.03
33 72 0.92
34 2 0.03
35 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (33 bp):
AACAATAACAGTATAGTGTGGGCCTTAGCCCAA
Found at i:18445461 original size:66 final size:65
Alignment explanation
Indices: 18445319--18445442 Score: 212
Period size: 66 Copynumber: 1.9 Consensus size: 65
18445309 AAACAGTCTA
*
18445319 GGCCTGAGCCCTTAACAGTAACAATATAGTGTGGGCCTTAGCCCAAAACAATAACGGTGGAAATT
1 GGCCTGAGCCCTTAACAGTAACAATATAGTGTGGGCCTTAGCCCAAAACAATAACAGT-GAAATT
18445384 G
65 G
* *
18445385 GGCCTGAGCCCTTAACAGTAACAGTATAGTGTGGGCCTTAGCCCAAAACAATAGCAGT
1 GGCCTGAGCCCTTAACAGTAACAATATAGTGTGGGCCTTAGCCCAAAACAATAACAGT
18445443 ATAGTGTGGG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (65 bp):
GGCCTGAGCCCTTAACAGTAACAATATAGTGTGGGCCTTAGCCCAAAACAATAACAGTGAAATTG
Found at i:18445920 original size:26 final size:26
Alignment explanation
Indices: 18445891--18445948 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
18445881 CAAAATAGTT
18445891 ATTTACCCTT-CAGGGGCATTACGATC
1 ATTTA-CCTTACAGGGGCATTACGATC
* * *
18445917 ATTTTACCTTACTGGGGTATTACGGTC
1 A-TTTACCTTACAGGGGCATTACGATC
18445944 ATTTA
1 ATTTA
18445949 ACAACCTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (26 bp):
ATTTACCTTACAGGGGCATTACGATC
Found at i:18452569 original size:23 final size:23
Alignment explanation
Indices: 18452539--18452609 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
18452529 TATTGAGCAA
* *
18452539 TGGTAGCTTCGGCAACATTTCAG
1 TGGTAGCTTCGGCTACATATCAG
*
18452562 TGGTAGCTAT-TGCTACATATCAG
1 TGGTAGCT-TCGGCTACATATCAG
*
18452585 TGTTAGCTTCGGCTACATATCAG
1 TGGTAGCTTCGGCTACATATCAG
18452608 TG
1 TG
18452610 TGGCACTTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 1 0.02
23 39 0.95
24 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (23 bp):
TGGTAGCTTCGGCTACATATCAG
Done.